Multiple sequence alignment - TraesCS1D01G236700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G236700 chr1D 100.000 5298 0 0 1 5298 326019414 326014117 0.000000e+00 9784.0
1 TraesCS1D01G236700 chr1A 95.430 3654 109 29 795 4420 416536678 416540301 0.000000e+00 5770.0
2 TraesCS1D01G236700 chr1A 89.516 744 68 5 52 788 416518894 416519634 0.000000e+00 933.0
3 TraesCS1D01G236700 chr1A 94.675 338 18 0 4953 5290 416540605 416540942 4.700000e-145 525.0
4 TraesCS1D01G236700 chr1A 89.068 311 30 1 507 813 137795850 137796160 2.990000e-102 383.0
5 TraesCS1D01G236700 chr1A 94.286 70 3 1 4754 4822 416540535 416540604 7.260000e-19 106.0
6 TraesCS1D01G236700 chr1A 93.103 58 4 0 4585 4642 416540304 416540361 9.450000e-13 86.1
7 TraesCS1D01G236700 chr1B 96.094 2765 69 14 1600 4342 439129979 439127232 0.000000e+00 4471.0
8 TraesCS1D01G236700 chr1B 96.409 557 13 6 1095 1649 439130528 439129977 0.000000e+00 911.0
9 TraesCS1D01G236700 chr1B 84.134 479 57 9 52 514 439139518 439139043 3.760000e-121 446.0
10 TraesCS1D01G236700 chr1B 85.577 312 24 9 4994 5287 439126670 439126362 1.850000e-79 307.0
11 TraesCS1D01G236700 chr1B 95.041 121 6 0 4430 4550 12924397 12924277 1.950000e-44 191.0
12 TraesCS1D01G236700 chr1B 94.949 99 5 0 4544 4642 439127093 439126995 7.100000e-34 156.0
13 TraesCS1D01G236700 chr1B 93.750 80 3 2 815 894 439137939 439137862 9.320000e-23 119.0
14 TraesCS1D01G236700 chr1B 95.385 65 3 0 4756 4820 439126733 439126669 2.610000e-18 104.0
15 TraesCS1D01G236700 chr1B 93.617 47 1 1 4638 4682 439126977 439126931 9.520000e-08 69.4
16 TraesCS1D01G236700 chr5D 89.423 312 27 3 510 817 261281657 261281348 6.430000e-104 388.0
17 TraesCS1D01G236700 chr5D 92.701 137 7 2 4825 4958 401093440 401093304 1.510000e-45 195.0
18 TraesCS1D01G236700 chr4B 89.577 307 28 2 511 813 92021764 92021458 2.310000e-103 387.0
19 TraesCS1D01G236700 chr3A 89.389 311 25 3 511 817 177108652 177108958 8.320000e-103 385.0
20 TraesCS1D01G236700 chr3A 95.385 130 3 2 4827 4953 489568869 489568740 2.500000e-48 204.0
21 TraesCS1D01G236700 chr2A 89.068 311 30 1 507 813 522245394 522245084 2.990000e-102 383.0
22 TraesCS1D01G236700 chr7B 88.818 313 31 1 507 815 528330268 528329956 1.080000e-101 381.0
23 TraesCS1D01G236700 chr7B 95.968 124 4 1 4430 4553 60039300 60039178 3.240000e-47 200.0
24 TraesCS1D01G236700 chr7A 88.644 317 31 2 509 821 700395502 700395187 1.080000e-101 381.0
25 TraesCS1D01G236700 chr7A 95.556 135 3 2 4824 4955 593548780 593548914 4.160000e-51 213.0
26 TraesCS1D01G236700 chr3B 88.401 319 32 3 508 822 463460196 463459879 3.870000e-101 379.0
27 TraesCS1D01G236700 chr3B 93.382 136 7 2 4418 4552 153651880 153651746 3.240000e-47 200.0
28 TraesCS1D01G236700 chr3B 95.902 122 4 1 4429 4550 466631766 466631646 4.190000e-46 196.0
29 TraesCS1D01G236700 chr6A 96.154 130 2 2 4827 4953 553945617 553945488 5.380000e-50 209.0
30 TraesCS1D01G236700 chr6A 93.284 134 6 2 4827 4957 609045436 609045303 1.510000e-45 195.0
31 TraesCS1D01G236700 chr6D 94.161 137 4 3 4825 4957 17236476 17236340 6.950000e-49 206.0
32 TraesCS1D01G236700 chr6D 93.478 138 5 3 4825 4958 379089482 379089619 9.000000e-48 202.0
33 TraesCS1D01G236700 chr4D 97.500 120 1 2 4429 4547 137728714 137728596 2.500000e-48 204.0
34 TraesCS1D01G236700 chr6B 96.694 121 4 0 4430 4550 181705046 181705166 9.000000e-48 202.0
35 TraesCS1D01G236700 chr6B 93.985 133 5 3 4429 4558 7154443 7154311 1.160000e-46 198.0
36 TraesCS1D01G236700 chr7D 95.276 127 5 1 4828 4953 541379902 541379776 3.240000e-47 200.0
37 TraesCS1D01G236700 chr5A 93.431 137 5 3 4827 4960 649614609 649614744 3.240000e-47 200.0
38 TraesCS1D01G236700 chr5B 92.254 142 7 3 4430 4568 711156068 711155928 1.160000e-46 198.0
39 TraesCS1D01G236700 chr2B 93.284 134 6 3 4418 4550 788660347 788660478 1.510000e-45 195.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G236700 chr1D 326014117 326019414 5297 True 9784.000000 9784 100.000000 1 5298 1 chr1D.!!$R1 5297
1 TraesCS1D01G236700 chr1A 416536678 416540942 4264 False 1621.775000 5770 94.373500 795 5290 4 chr1A.!!$F3 4495
2 TraesCS1D01G236700 chr1A 416518894 416519634 740 False 933.000000 933 89.516000 52 788 1 chr1A.!!$F2 736
3 TraesCS1D01G236700 chr1B 439126362 439130528 4166 True 1003.066667 4471 93.671833 1095 5287 6 chr1B.!!$R2 4192
4 TraesCS1D01G236700 chr1B 439137862 439139518 1656 True 282.500000 446 88.942000 52 894 2 chr1B.!!$R3 842

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
924 1884 0.511653 GAGAAGCACCGAACGGAAAC 59.488 55.000 20.14 8.28 38.96 2.78 F
941 1901 1.037493 AACGAAAAGGAACCCAAGCC 58.963 50.000 0.00 0.00 0.00 4.35 F
975 1935 1.740585 CCATCGTTCGCCATAAAACCA 59.259 47.619 0.00 0.00 0.00 3.67 F
1877 2891 2.787473 TTGTGCTAGCAGCCAAGTAT 57.213 45.000 20.03 0.00 41.51 2.12 F
3711 4728 1.005215 CCCTGGCTGAATGGAAGACTT 59.995 52.381 0.00 0.00 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 2740 0.610174 CTAGGAGTTGACAGCAGCCA 59.390 55.000 4.51 0.00 0.00 4.75 R
1851 2865 2.216898 GGCTGCTAGCACAAATAGGAG 58.783 52.381 14.93 1.50 44.75 3.69 R
2019 3033 6.291377 AGAGCCGTGATAATATTGACACAAT 58.709 36.000 19.28 0.00 33.56 2.71 R
3852 4869 0.608640 AGTGCCGATTCGAGAAACCT 59.391 50.000 7.83 0.00 0.00 3.50 R
4936 6147 0.037046 TTAAGGGAGCGTTCGGTTCC 60.037 55.000 13.06 13.06 44.77 3.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.695526 CAAACAGATTAACCAGAATTGAATGAA 57.304 29.630 0.00 0.00 0.00 2.57
28 29 9.865321 AACAGATTAACCAGAATTGAATGAATG 57.135 29.630 0.00 0.00 0.00 2.67
29 30 9.028284 ACAGATTAACCAGAATTGAATGAATGT 57.972 29.630 0.00 0.00 0.00 2.71
30 31 9.297586 CAGATTAACCAGAATTGAATGAATGTG 57.702 33.333 0.00 0.00 0.00 3.21
31 32 8.472413 AGATTAACCAGAATTGAATGAATGTGG 58.528 33.333 0.00 0.00 35.99 4.17
32 33 5.410355 AACCAGAATTGAATGAATGTGGG 57.590 39.130 0.00 0.00 34.90 4.61
33 34 4.419282 ACCAGAATTGAATGAATGTGGGT 58.581 39.130 0.00 0.00 34.90 4.51
34 35 5.579047 ACCAGAATTGAATGAATGTGGGTA 58.421 37.500 0.00 0.00 34.90 3.69
35 36 5.653769 ACCAGAATTGAATGAATGTGGGTAG 59.346 40.000 0.00 0.00 34.90 3.18
36 37 5.887598 CCAGAATTGAATGAATGTGGGTAGA 59.112 40.000 0.00 0.00 30.07 2.59
37 38 6.377996 CCAGAATTGAATGAATGTGGGTAGAA 59.622 38.462 0.00 0.00 30.07 2.10
38 39 7.093814 CCAGAATTGAATGAATGTGGGTAGAAA 60.094 37.037 0.00 0.00 30.07 2.52
39 40 8.306038 CAGAATTGAATGAATGTGGGTAGAAAA 58.694 33.333 0.00 0.00 0.00 2.29
40 41 8.869109 AGAATTGAATGAATGTGGGTAGAAAAA 58.131 29.630 0.00 0.00 0.00 1.94
41 42 9.143631 GAATTGAATGAATGTGGGTAGAAAAAG 57.856 33.333 0.00 0.00 0.00 2.27
42 43 7.831691 TTGAATGAATGTGGGTAGAAAAAGA 57.168 32.000 0.00 0.00 0.00 2.52
43 44 7.831691 TGAATGAATGTGGGTAGAAAAAGAA 57.168 32.000 0.00 0.00 0.00 2.52
44 45 7.657336 TGAATGAATGTGGGTAGAAAAAGAAC 58.343 34.615 0.00 0.00 0.00 3.01
45 46 7.505585 TGAATGAATGTGGGTAGAAAAAGAACT 59.494 33.333 0.00 0.00 0.00 3.01
46 47 7.839680 ATGAATGTGGGTAGAAAAAGAACTT 57.160 32.000 0.00 0.00 0.00 2.66
47 48 7.272037 TGAATGTGGGTAGAAAAAGAACTTC 57.728 36.000 0.00 0.00 0.00 3.01
48 49 6.831353 TGAATGTGGGTAGAAAAAGAACTTCA 59.169 34.615 0.00 0.00 0.00 3.02
49 50 7.505585 TGAATGTGGGTAGAAAAAGAACTTCAT 59.494 33.333 0.00 0.00 0.00 2.57
50 51 6.633500 TGTGGGTAGAAAAAGAACTTCATG 57.367 37.500 0.00 0.00 0.00 3.07
67 68 4.356405 TCATGAGTTTTCCTCTTGCTCA 57.644 40.909 0.00 0.00 42.34 4.26
99 100 3.846180 GATGCACCATCGCCCATT 58.154 55.556 0.00 0.00 31.01 3.16
104 105 1.102809 GCACCATCGCCCATTGATGA 61.103 55.000 4.61 0.00 44.76 2.92
117 118 4.041740 CATTGATGATGGAGGCAAAGTG 57.958 45.455 0.00 0.00 31.83 3.16
130 131 0.517316 CAAAGTGCGTACAAGAGGGC 59.483 55.000 6.38 0.00 0.00 5.19
199 200 1.424638 GGGCCTAGGAAGCAGATACA 58.575 55.000 14.75 0.00 0.00 2.29
236 237 1.741770 CGTGGAAGAAGGGAAGGCG 60.742 63.158 0.00 0.00 0.00 5.52
261 262 3.574396 AGACGGTTGAAAGATGAGAGACA 59.426 43.478 0.00 0.00 0.00 3.41
318 319 4.376146 GCTAGGTTCATGAGAAGACATCC 58.624 47.826 0.00 0.00 33.63 3.51
370 379 1.334384 TTGGGCTGCGGTCTAGCATA 61.334 55.000 0.00 0.00 46.97 3.14
388 397 4.021368 AGCATAGAGTTACGGGCGATAAAT 60.021 41.667 0.00 0.00 0.00 1.40
622 638 6.992063 ATGATGTTTTCTCGAACTAGCAAT 57.008 33.333 0.00 0.00 0.00 3.56
623 639 6.801539 TGATGTTTTCTCGAACTAGCAATT 57.198 33.333 0.00 0.00 0.00 2.32
628 644 6.910433 TGTTTTCTCGAACTAGCAATTTGTTC 59.090 34.615 0.00 0.00 37.92 3.18
644 660 7.044380 GCAATTTGTTCAATATTTGCATGCATG 60.044 33.333 23.37 22.70 0.00 4.06
679 695 4.040952 ACACTGTGCTACTTCCTTCTCATT 59.959 41.667 7.90 0.00 0.00 2.57
680 696 4.999950 CACTGTGCTACTTCCTTCTCATTT 59.000 41.667 0.00 0.00 0.00 2.32
688 704 6.093357 GCTACTTCCTTCTCATTTCTTCCTTG 59.907 42.308 0.00 0.00 0.00 3.61
689 705 4.764308 ACTTCCTTCTCATTTCTTCCTTGC 59.236 41.667 0.00 0.00 0.00 4.01
719 739 5.410132 TGCATATTAATGATCCCGGTTAACG 59.590 40.000 0.00 0.00 37.56 3.18
788 898 3.320826 ACCTGTCATTTAAGTTTGTGGCC 59.679 43.478 0.00 0.00 0.00 5.36
789 899 3.573967 CCTGTCATTTAAGTTTGTGGCCT 59.426 43.478 3.32 0.00 0.00 5.19
790 900 4.039124 CCTGTCATTTAAGTTTGTGGCCTT 59.961 41.667 3.32 0.00 0.00 4.35
792 902 4.404073 TGTCATTTAAGTTTGTGGCCTTGT 59.596 37.500 3.32 0.00 0.00 3.16
793 903 5.594725 TGTCATTTAAGTTTGTGGCCTTGTA 59.405 36.000 3.32 0.00 0.00 2.41
827 1785 5.017106 AGAGGGAGTACTTAGTTTAAGGGGA 59.983 44.000 0.00 0.00 40.08 4.81
888 1848 4.188247 TCATGACAAGAAACTACTCCCG 57.812 45.455 0.00 0.00 0.00 5.14
893 1853 2.561858 ACAAGAAACTACTCCCGTCCTC 59.438 50.000 0.00 0.00 0.00 3.71
904 1864 1.276989 TCCCGTCCTCGCTTTAAACAT 59.723 47.619 0.00 0.00 35.54 2.71
911 1871 3.684788 TCCTCGCTTTAAACATGAGAAGC 59.315 43.478 0.00 8.20 40.71 3.86
914 1874 3.188460 TCGCTTTAAACATGAGAAGCACC 59.812 43.478 19.06 0.00 43.45 5.01
918 1878 4.742438 TTAAACATGAGAAGCACCGAAC 57.258 40.909 0.00 0.00 0.00 3.95
920 1880 0.670546 ACATGAGAAGCACCGAACGG 60.671 55.000 11.83 11.83 42.03 4.44
924 1884 0.511653 GAGAAGCACCGAACGGAAAC 59.488 55.000 20.14 8.28 38.96 2.78
939 1899 3.364889 GGAAACGAAAAGGAACCCAAG 57.635 47.619 0.00 0.00 0.00 3.61
941 1901 1.037493 AACGAAAAGGAACCCAAGCC 58.963 50.000 0.00 0.00 0.00 4.35
943 1903 1.862602 CGAAAAGGAACCCAAGCCGG 61.863 60.000 0.00 0.00 0.00 6.13
947 1907 4.986708 GGAACCCAAGCCGGCCAA 62.987 66.667 26.15 0.00 0.00 4.52
975 1935 1.740585 CCATCGTTCGCCATAAAACCA 59.259 47.619 0.00 0.00 0.00 3.67
1419 2385 5.635700 CGAGGAAACTAGAGAGGAAAAACTG 59.364 44.000 0.00 0.00 44.43 3.16
1726 2740 6.865834 TGGGGTTGTTATGCTTATTTTCAT 57.134 33.333 0.00 0.00 0.00 2.57
1755 2769 5.567623 GCTGTCAACTCCTAGTGAGAAATGA 60.568 44.000 13.28 11.12 44.42 2.57
1877 2891 2.787473 TTGTGCTAGCAGCCAAGTAT 57.213 45.000 20.03 0.00 41.51 2.12
1882 2896 5.924356 TGTGCTAGCAGCCAAGTATTAATA 58.076 37.500 20.03 0.00 41.51 0.98
1886 2900 8.352942 GTGCTAGCAGCCAAGTATTAATATTTT 58.647 33.333 20.03 0.00 41.51 1.82
1930 2944 7.425224 TCCAAACAAAATAACTCCTTTTCCA 57.575 32.000 0.00 0.00 0.00 3.53
1940 2954 4.861102 ACTCCTTTTCCAGATGCTTTTG 57.139 40.909 0.00 0.00 0.00 2.44
2111 3125 2.880167 GCTAACCCCTTCCCAGAGTTTG 60.880 54.545 0.00 0.00 0.00 2.93
2409 3426 8.662781 ATTTCACTATAACGCATGTTAGACAT 57.337 30.769 0.00 0.00 43.45 3.06
2444 3461 6.037098 ACTGATGAAACTATAGCTTCACGAC 58.963 40.000 18.43 13.60 33.58 4.34
2507 3524 7.865706 AGCTATTTACCATTTGTACCAGAAG 57.134 36.000 0.00 0.00 0.00 2.85
2508 3525 7.402862 AGCTATTTACCATTTGTACCAGAAGT 58.597 34.615 0.00 0.00 0.00 3.01
2523 3540 6.884280 ACCAGAAGTTTTCTAGAATTGTGG 57.116 37.500 22.62 22.62 38.11 4.17
2584 3601 6.935036 TGATAATCTCCTTAGTCCTTAGGGT 58.065 40.000 0.00 0.00 30.69 4.34
2668 3685 4.429854 AGACAGTTCCTTTTTCTCTGCT 57.570 40.909 0.00 0.00 0.00 4.24
3356 4373 5.986501 AGAAAGTATCTGGACGAGAAGTT 57.013 39.130 0.00 0.00 36.88 2.66
3369 4386 2.546795 CGAGAAGTTGAGGTGTTGCTCT 60.547 50.000 0.00 0.00 0.00 4.09
3669 4686 2.496470 AGACCAAGTAGAATCACCGGAC 59.504 50.000 9.46 0.00 0.00 4.79
3711 4728 1.005215 CCCTGGCTGAATGGAAGACTT 59.995 52.381 0.00 0.00 0.00 3.01
3834 4851 4.063967 ATCCGACGGTCAAGCGCA 62.064 61.111 14.79 0.00 0.00 6.09
3946 4963 0.040514 CGCTGGAAACAATCGTGCAA 60.041 50.000 0.00 0.00 42.06 4.08
4041 5058 0.399075 AGCATGATCCATGATCGGCA 59.601 50.000 17.25 0.00 43.81 5.69
4153 5170 9.914834 ATCTTGGCCTATTTACTATTTGTGTAA 57.085 29.630 3.32 0.00 0.00 2.41
4173 5190 9.135843 TGTGTAATATCTCTGTTAGAAACGTTG 57.864 33.333 0.00 0.00 37.89 4.10
4242 5281 6.920569 TGTTCTTGGTAGTCTTGTCTTTTC 57.079 37.500 0.00 0.00 0.00 2.29
4299 5338 9.412460 TGAAATGAGATATAACAGCATTTTCCT 57.588 29.630 12.03 0.00 38.75 3.36
4329 5368 6.014242 GGATTGGTTCATTCTTTCCCTTTCTT 60.014 38.462 0.00 0.00 0.00 2.52
4370 5432 5.069914 TGTTACTATGGTTACGCTGATGGAT 59.930 40.000 0.00 0.00 0.00 3.41
4434 5496 6.313744 ACAAATTTGTTAGTGCTGTACTCC 57.686 37.500 18.13 0.00 38.47 3.85
4435 5497 5.240844 ACAAATTTGTTAGTGCTGTACTCCC 59.759 40.000 18.13 0.00 38.47 4.30
4436 5498 4.910458 ATTTGTTAGTGCTGTACTCCCT 57.090 40.909 0.46 0.00 40.89 4.20
4437 5499 4.699925 TTTGTTAGTGCTGTACTCCCTT 57.300 40.909 0.46 0.00 40.89 3.95
4438 5500 3.955650 TGTTAGTGCTGTACTCCCTTC 57.044 47.619 0.46 0.00 40.89 3.46
4439 5501 2.230508 TGTTAGTGCTGTACTCCCTTCG 59.769 50.000 0.46 0.00 40.89 3.79
4440 5502 2.211250 TAGTGCTGTACTCCCTTCGT 57.789 50.000 0.46 0.00 40.89 3.85
4441 5503 0.889306 AGTGCTGTACTCCCTTCGTC 59.111 55.000 0.00 0.00 33.17 4.20
4442 5504 0.108756 GTGCTGTACTCCCTTCGTCC 60.109 60.000 0.00 0.00 0.00 4.79
4443 5505 1.139095 GCTGTACTCCCTTCGTCCG 59.861 63.158 0.00 0.00 0.00 4.79
4444 5506 1.807886 CTGTACTCCCTTCGTCCGG 59.192 63.158 0.00 0.00 0.00 5.14
4446 5508 0.251297 TGTACTCCCTTCGTCCGGAA 60.251 55.000 5.23 0.00 0.00 4.30
4447 5509 0.890683 GTACTCCCTTCGTCCGGAAA 59.109 55.000 5.23 0.00 33.34 3.13
4448 5510 1.479730 GTACTCCCTTCGTCCGGAAAT 59.520 52.381 5.23 0.00 33.34 2.17
4449 5511 1.856629 ACTCCCTTCGTCCGGAAATA 58.143 50.000 5.23 0.00 33.34 1.40
4450 5512 1.479730 ACTCCCTTCGTCCGGAAATAC 59.520 52.381 5.23 0.00 33.34 1.89
4451 5513 1.755380 CTCCCTTCGTCCGGAAATACT 59.245 52.381 5.23 0.00 33.34 2.12
4453 5515 2.093869 TCCCTTCGTCCGGAAATACTTG 60.094 50.000 5.23 0.00 33.34 3.16
4455 5517 2.928116 CCTTCGTCCGGAAATACTTGTC 59.072 50.000 5.23 0.00 33.34 3.18
4456 5518 3.581755 CTTCGTCCGGAAATACTTGTCA 58.418 45.455 5.23 0.00 33.34 3.58
4457 5519 3.880047 TCGTCCGGAAATACTTGTCAT 57.120 42.857 5.23 0.00 0.00 3.06
4458 5520 4.196626 TCGTCCGGAAATACTTGTCATT 57.803 40.909 5.23 0.00 0.00 2.57
4459 5521 3.930229 TCGTCCGGAAATACTTGTCATTG 59.070 43.478 5.23 0.00 0.00 2.82
4460 5522 3.930229 CGTCCGGAAATACTTGTCATTGA 59.070 43.478 5.23 0.00 0.00 2.57
4461 5523 4.390603 CGTCCGGAAATACTTGTCATTGAA 59.609 41.667 5.23 0.00 0.00 2.69
4462 5524 5.106869 CGTCCGGAAATACTTGTCATTGAAA 60.107 40.000 5.23 0.00 0.00 2.69
4463 5525 6.403200 CGTCCGGAAATACTTGTCATTGAAAT 60.403 38.462 5.23 0.00 0.00 2.17
4464 5526 6.747280 GTCCGGAAATACTTGTCATTGAAATG 59.253 38.462 5.23 0.00 37.75 2.32
4465 5527 6.035843 CCGGAAATACTTGTCATTGAAATGG 58.964 40.000 0.00 0.00 37.03 3.16
4466 5528 6.127758 CCGGAAATACTTGTCATTGAAATGGA 60.128 38.462 0.00 0.00 37.03 3.41
4467 5529 7.416664 CCGGAAATACTTGTCATTGAAATGGAT 60.417 37.037 0.00 0.00 37.03 3.41
4468 5530 7.433131 CGGAAATACTTGTCATTGAAATGGATG 59.567 37.037 3.31 0.00 37.03 3.51
4469 5531 8.253113 GGAAATACTTGTCATTGAAATGGATGT 58.747 33.333 3.31 2.77 37.03 3.06
4473 5535 9.857656 ATACTTGTCATTGAAATGGATGTATCT 57.142 29.630 3.31 0.00 37.03 1.98
4475 5537 9.334947 ACTTGTCATTGAAATGGATGTATCTAG 57.665 33.333 3.31 0.00 37.03 2.43
4476 5538 9.551734 CTTGTCATTGAAATGGATGTATCTAGA 57.448 33.333 0.00 0.00 37.03 2.43
4478 5540 9.498176 TGTCATTGAAATGGATGTATCTAGATG 57.502 33.333 15.79 0.00 37.03 2.90
4479 5541 9.499479 GTCATTGAAATGGATGTATCTAGATGT 57.501 33.333 15.79 1.25 37.03 3.06
4511 5573 9.685276 AGTTGTAGATACATCAATTTTCATCCA 57.315 29.630 4.39 0.00 35.89 3.41
4531 5593 9.246670 TCATCCATTTTGATGACAAGTATTTCT 57.753 29.630 0.00 0.00 44.65 2.52
4532 5594 9.297586 CATCCATTTTGATGACAAGTATTTCTG 57.702 33.333 0.00 0.00 43.94 3.02
4533 5595 7.829725 TCCATTTTGATGACAAGTATTTCTGG 58.170 34.615 0.00 0.00 37.32 3.86
4534 5596 7.669304 TCCATTTTGATGACAAGTATTTCTGGA 59.331 33.333 0.00 0.00 37.32 3.86
4535 5597 7.756722 CCATTTTGATGACAAGTATTTCTGGAC 59.243 37.037 0.00 0.00 37.32 4.02
4536 5598 6.480524 TTTGATGACAAGTATTTCTGGACG 57.519 37.500 0.00 0.00 37.32 4.79
4537 5599 4.503910 TGATGACAAGTATTTCTGGACGG 58.496 43.478 0.00 0.00 0.00 4.79
4538 5600 4.221924 TGATGACAAGTATTTCTGGACGGA 59.778 41.667 0.00 0.00 0.00 4.69
4539 5601 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
4540 5602 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
4541 5603 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
4542 5604 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
4548 5610 1.588239 TCTGGACGGAGGGAGTACTA 58.412 55.000 0.00 0.00 0.00 1.82
4564 5626 9.435570 AGGGAGTACTATTTTAGAGCTATTTCA 57.564 33.333 0.00 0.00 0.00 2.69
4585 5647 8.828688 TTTCATTAATTGATTGACAATGTGCA 57.171 26.923 5.14 0.00 46.90 4.57
4589 5651 3.663995 TTGATTGACAATGTGCAAGGG 57.336 42.857 5.14 0.00 33.18 3.95
4673 5757 3.662247 TCTCCTTTTCCGTGAAGAGTC 57.338 47.619 4.36 0.00 0.00 3.36
4674 5758 2.963101 TCTCCTTTTCCGTGAAGAGTCA 59.037 45.455 0.00 0.00 0.00 3.41
4675 5759 3.386726 TCTCCTTTTCCGTGAAGAGTCAA 59.613 43.478 0.00 0.00 34.87 3.18
4676 5760 3.728845 TCCTTTTCCGTGAAGAGTCAAG 58.271 45.455 0.00 0.00 34.87 3.02
4677 5761 3.134081 TCCTTTTCCGTGAAGAGTCAAGT 59.866 43.478 0.00 0.00 34.87 3.16
4678 5762 4.342951 TCCTTTTCCGTGAAGAGTCAAGTA 59.657 41.667 0.00 0.00 34.87 2.24
4680 5764 4.931661 TTTCCGTGAAGAGTCAAGTAGT 57.068 40.909 0.00 0.00 34.87 2.73
4681 5765 6.395426 TTTTCCGTGAAGAGTCAAGTAGTA 57.605 37.500 0.00 0.00 34.87 1.82
4682 5766 5.368256 TTCCGTGAAGAGTCAAGTAGTAC 57.632 43.478 0.00 0.00 34.87 2.73
4684 5768 4.694509 TCCGTGAAGAGTCAAGTAGTACTC 59.305 45.833 2.58 0.00 42.02 2.59
4685 5769 4.142643 CCGTGAAGAGTCAAGTAGTACTCC 60.143 50.000 2.58 0.00 42.56 3.85
4686 5770 4.142643 CGTGAAGAGTCAAGTAGTACTCCC 60.143 50.000 2.58 0.00 42.56 4.30
4687 5771 4.765856 GTGAAGAGTCAAGTAGTACTCCCA 59.234 45.833 2.58 0.00 42.56 4.37
4689 5773 4.661247 AGAGTCAAGTAGTACTCCCAGT 57.339 45.455 2.58 0.00 42.56 4.00
4690 5774 4.337145 AGAGTCAAGTAGTACTCCCAGTG 58.663 47.826 2.58 0.00 42.56 3.66
4691 5775 4.043059 AGAGTCAAGTAGTACTCCCAGTGA 59.957 45.833 2.58 0.29 42.56 3.41
4692 5776 4.080687 AGTCAAGTAGTACTCCCAGTGAC 58.919 47.826 18.36 18.36 33.44 3.67
4718 5897 5.695816 TGCAGTTTGCCATGAACTAAAATTC 59.304 36.000 0.00 0.00 44.23 2.17
4723 5902 8.203485 AGTTTGCCATGAACTAAAATTCAAGAA 58.797 29.630 0.00 0.00 41.78 2.52
4742 5921 9.793259 TTCAAGAACTGAAATTAACTGTAGGAT 57.207 29.630 0.00 0.00 41.21 3.24
4743 5922 9.436957 TCAAGAACTGAAATTAACTGTAGGATC 57.563 33.333 0.00 0.00 0.00 3.36
4744 5923 9.442047 CAAGAACTGAAATTAACTGTAGGATCT 57.558 33.333 0.00 0.00 0.00 2.75
4747 5926 9.535878 GAACTGAAATTAACTGTAGGATCTAGG 57.464 37.037 0.00 0.00 0.00 3.02
4748 5927 8.611051 ACTGAAATTAACTGTAGGATCTAGGT 57.389 34.615 0.00 0.00 0.00 3.08
4805 6016 9.315525 GTTCTGTTGTTTTAGTCTATAGGGATC 57.684 37.037 0.00 0.00 0.00 3.36
4831 6042 3.990318 GTGCAACTCATATTTAGGCCC 57.010 47.619 0.00 0.00 0.00 5.80
4832 6043 2.623416 GTGCAACTCATATTTAGGCCCC 59.377 50.000 0.00 0.00 0.00 5.80
4833 6044 1.880027 GCAACTCATATTTAGGCCCCG 59.120 52.381 0.00 0.00 0.00 5.73
4834 6045 2.748465 GCAACTCATATTTAGGCCCCGT 60.748 50.000 0.00 0.00 0.00 5.28
4835 6046 3.551846 CAACTCATATTTAGGCCCCGTT 58.448 45.455 0.00 0.00 0.00 4.44
4836 6047 3.487120 ACTCATATTTAGGCCCCGTTC 57.513 47.619 0.00 0.00 0.00 3.95
4837 6048 2.224209 ACTCATATTTAGGCCCCGTTCG 60.224 50.000 0.00 0.00 0.00 3.95
4838 6049 1.764134 TCATATTTAGGCCCCGTTCGT 59.236 47.619 0.00 0.00 0.00 3.85
4839 6050 2.964464 TCATATTTAGGCCCCGTTCGTA 59.036 45.455 0.00 0.00 0.00 3.43
4840 6051 3.387374 TCATATTTAGGCCCCGTTCGTAA 59.613 43.478 0.00 0.00 0.00 3.18
4841 6052 4.040706 TCATATTTAGGCCCCGTTCGTAAT 59.959 41.667 0.00 0.00 0.00 1.89
4842 6053 2.314323 TTTAGGCCCCGTTCGTAATC 57.686 50.000 0.00 0.00 0.00 1.75
4843 6054 1.488390 TTAGGCCCCGTTCGTAATCT 58.512 50.000 0.00 0.00 0.00 2.40
4844 6055 1.035139 TAGGCCCCGTTCGTAATCTC 58.965 55.000 0.00 0.00 0.00 2.75
4845 6056 0.686769 AGGCCCCGTTCGTAATCTCT 60.687 55.000 0.00 0.00 0.00 3.10
4846 6057 0.249363 GGCCCCGTTCGTAATCTCTC 60.249 60.000 0.00 0.00 0.00 3.20
4847 6058 0.745468 GCCCCGTTCGTAATCTCTCT 59.255 55.000 0.00 0.00 0.00 3.10
4848 6059 1.136500 GCCCCGTTCGTAATCTCTCTT 59.864 52.381 0.00 0.00 0.00 2.85
4849 6060 2.798853 GCCCCGTTCGTAATCTCTCTTC 60.799 54.545 0.00 0.00 0.00 2.87
4850 6061 2.688958 CCCCGTTCGTAATCTCTCTTCT 59.311 50.000 0.00 0.00 0.00 2.85
4851 6062 3.243134 CCCCGTTCGTAATCTCTCTTCTC 60.243 52.174 0.00 0.00 0.00 2.87
4852 6063 3.243134 CCCGTTCGTAATCTCTCTTCTCC 60.243 52.174 0.00 0.00 0.00 3.71
4853 6064 3.377485 CCGTTCGTAATCTCTCTTCTCCA 59.623 47.826 0.00 0.00 0.00 3.86
4854 6065 4.344448 CGTTCGTAATCTCTCTTCTCCAC 58.656 47.826 0.00 0.00 0.00 4.02
4855 6066 4.095185 CGTTCGTAATCTCTCTTCTCCACT 59.905 45.833 0.00 0.00 0.00 4.00
4856 6067 5.575019 GTTCGTAATCTCTCTTCTCCACTC 58.425 45.833 0.00 0.00 0.00 3.51
4857 6068 4.200874 TCGTAATCTCTCTTCTCCACTCC 58.799 47.826 0.00 0.00 0.00 3.85
4858 6069 3.002862 CGTAATCTCTCTTCTCCACTCCG 59.997 52.174 0.00 0.00 0.00 4.63
4859 6070 1.398692 ATCTCTCTTCTCCACTCCGC 58.601 55.000 0.00 0.00 0.00 5.54
4860 6071 1.027255 TCTCTCTTCTCCACTCCGCG 61.027 60.000 0.00 0.00 0.00 6.46
4861 6072 1.999071 CTCTCTTCTCCACTCCGCGG 61.999 65.000 22.12 22.12 0.00 6.46
4862 6073 2.035155 TCTTCTCCACTCCGCGGA 59.965 61.111 29.03 29.03 0.00 5.54
4871 6082 3.691342 CTCCGCGGAGTTGGTGGA 61.691 66.667 40.77 12.14 41.55 4.02
4872 6083 3.691342 TCCGCGGAGTTGGTGGAG 61.691 66.667 27.28 0.00 39.06 3.86
4874 6085 4.379243 CGCGGAGTTGGTGGAGCT 62.379 66.667 0.00 0.00 0.00 4.09
4875 6086 2.435059 GCGGAGTTGGTGGAGCTC 60.435 66.667 4.71 4.71 0.00 4.09
4876 6087 2.125912 CGGAGTTGGTGGAGCTCG 60.126 66.667 7.83 0.00 0.00 5.03
4877 6088 2.266055 GGAGTTGGTGGAGCTCGG 59.734 66.667 7.83 0.00 0.00 4.63
4878 6089 2.584391 GGAGTTGGTGGAGCTCGGT 61.584 63.158 7.83 0.00 0.00 4.69
4879 6090 1.079750 GAGTTGGTGGAGCTCGGTC 60.080 63.158 7.83 0.18 0.00 4.79
4880 6091 1.534235 AGTTGGTGGAGCTCGGTCT 60.534 57.895 7.83 0.00 0.00 3.85
4881 6092 1.122019 AGTTGGTGGAGCTCGGTCTT 61.122 55.000 7.83 0.00 0.00 3.01
4882 6093 0.250338 GTTGGTGGAGCTCGGTCTTT 60.250 55.000 7.83 0.00 0.00 2.52
4883 6094 0.250295 TTGGTGGAGCTCGGTCTTTG 60.250 55.000 7.83 0.00 0.00 2.77
4884 6095 2.035442 GGTGGAGCTCGGTCTTTGC 61.035 63.158 7.83 0.00 0.00 3.68
4885 6096 1.301716 GTGGAGCTCGGTCTTTGCA 60.302 57.895 7.83 0.00 0.00 4.08
4886 6097 1.004560 TGGAGCTCGGTCTTTGCAG 60.005 57.895 7.83 0.00 0.00 4.41
4887 6098 2.394563 GGAGCTCGGTCTTTGCAGC 61.395 63.158 7.83 0.00 0.00 5.25
4888 6099 1.375268 GAGCTCGGTCTTTGCAGCT 60.375 57.895 0.00 0.00 45.07 4.24
4889 6100 1.375268 AGCTCGGTCTTTGCAGCTC 60.375 57.895 0.00 0.00 37.72 4.09
4890 6101 1.375268 GCTCGGTCTTTGCAGCTCT 60.375 57.895 0.00 0.00 0.00 4.09
4891 6102 1.633852 GCTCGGTCTTTGCAGCTCTG 61.634 60.000 0.00 0.00 0.00 3.35
4892 6103 0.320247 CTCGGTCTTTGCAGCTCTGT 60.320 55.000 0.00 0.00 0.00 3.41
4893 6104 0.106708 TCGGTCTTTGCAGCTCTGTT 59.893 50.000 0.00 0.00 0.00 3.16
4894 6105 1.343142 TCGGTCTTTGCAGCTCTGTTA 59.657 47.619 0.00 0.00 0.00 2.41
4895 6106 2.143122 CGGTCTTTGCAGCTCTGTTAA 58.857 47.619 0.00 0.00 0.00 2.01
4896 6107 2.548057 CGGTCTTTGCAGCTCTGTTAAA 59.452 45.455 0.00 1.22 0.00 1.52
4897 6108 3.364366 CGGTCTTTGCAGCTCTGTTAAAG 60.364 47.826 15.83 15.83 37.78 1.85
4898 6109 3.565902 GGTCTTTGCAGCTCTGTTAAAGT 59.434 43.478 18.68 0.00 37.72 2.66
4899 6110 4.531332 GTCTTTGCAGCTCTGTTAAAGTG 58.469 43.478 18.68 5.75 37.72 3.16
4900 6111 4.273480 GTCTTTGCAGCTCTGTTAAAGTGA 59.727 41.667 18.68 7.21 37.72 3.41
4901 6112 4.512944 TCTTTGCAGCTCTGTTAAAGTGAG 59.487 41.667 18.68 0.00 37.72 3.51
4902 6113 2.771089 TGCAGCTCTGTTAAAGTGAGG 58.229 47.619 0.00 0.00 0.00 3.86
4903 6114 2.104792 TGCAGCTCTGTTAAAGTGAGGT 59.895 45.455 0.00 0.00 38.83 3.85
4904 6115 2.739379 GCAGCTCTGTTAAAGTGAGGTC 59.261 50.000 0.00 0.00 36.57 3.85
4905 6116 3.330267 CAGCTCTGTTAAAGTGAGGTCC 58.670 50.000 0.00 0.00 36.57 4.46
4906 6117 2.028930 AGCTCTGTTAAAGTGAGGTCCG 60.029 50.000 0.00 0.00 33.98 4.79
4907 6118 2.338500 CTCTGTTAAAGTGAGGTCCGC 58.662 52.381 0.00 0.00 0.00 5.54
4908 6119 1.968493 TCTGTTAAAGTGAGGTCCGCT 59.032 47.619 0.00 0.00 37.17 5.52
4909 6120 2.029290 TCTGTTAAAGTGAGGTCCGCTC 60.029 50.000 0.00 0.00 33.81 5.03
4910 6121 1.001633 TGTTAAAGTGAGGTCCGCTCC 59.998 52.381 0.00 0.00 33.81 4.70
4911 6122 0.245539 TTAAAGTGAGGTCCGCTCCG 59.754 55.000 0.00 0.00 33.81 4.63
4926 6137 1.475403 CTCCGGGAGCAGAGTTAAGA 58.525 55.000 11.83 0.00 0.00 2.10
4927 6138 1.407258 CTCCGGGAGCAGAGTTAAGAG 59.593 57.143 11.83 0.00 0.00 2.85
4928 6139 1.005569 TCCGGGAGCAGAGTTAAGAGA 59.994 52.381 0.00 0.00 0.00 3.10
4929 6140 1.407258 CCGGGAGCAGAGTTAAGAGAG 59.593 57.143 0.00 0.00 0.00 3.20
4930 6141 1.202359 CGGGAGCAGAGTTAAGAGAGC 60.202 57.143 0.00 0.00 0.00 4.09
4931 6142 1.202359 GGGAGCAGAGTTAAGAGAGCG 60.202 57.143 0.00 0.00 0.00 5.03
4932 6143 1.202359 GGAGCAGAGTTAAGAGAGCGG 60.202 57.143 0.00 0.00 0.00 5.52
4933 6144 1.746220 GAGCAGAGTTAAGAGAGCGGA 59.254 52.381 0.00 0.00 0.00 5.54
4934 6145 1.748493 AGCAGAGTTAAGAGAGCGGAG 59.252 52.381 0.00 0.00 0.00 4.63
4935 6146 1.746220 GCAGAGTTAAGAGAGCGGAGA 59.254 52.381 0.00 0.00 0.00 3.71
4936 6147 2.223479 GCAGAGTTAAGAGAGCGGAGAG 60.223 54.545 0.00 0.00 0.00 3.20
4937 6148 2.357637 CAGAGTTAAGAGAGCGGAGAGG 59.642 54.545 0.00 0.00 0.00 3.69
4938 6149 2.240160 AGAGTTAAGAGAGCGGAGAGGA 59.760 50.000 0.00 0.00 0.00 3.71
4939 6150 3.018149 GAGTTAAGAGAGCGGAGAGGAA 58.982 50.000 0.00 0.00 0.00 3.36
4940 6151 2.756207 AGTTAAGAGAGCGGAGAGGAAC 59.244 50.000 0.00 0.00 0.00 3.62
4941 6152 1.765230 TAAGAGAGCGGAGAGGAACC 58.235 55.000 0.00 0.00 0.00 3.62
4948 6159 2.971452 GGAGAGGAACCGAACGCT 59.029 61.111 0.00 0.00 0.00 5.07
4949 6160 1.153804 GGAGAGGAACCGAACGCTC 60.154 63.158 0.00 0.00 0.00 5.03
4950 6161 1.153804 GAGAGGAACCGAACGCTCC 60.154 63.158 0.00 0.00 0.00 4.70
4951 6162 2.125633 GAGGAACCGAACGCTCCC 60.126 66.667 9.00 0.00 0.00 4.30
4986 6197 2.679837 CGCCTGATAACTGTTGCATCTT 59.320 45.455 2.69 0.00 0.00 2.40
5123 6334 5.645067 TGATGACATAGCCAGACAAGAAAAG 59.355 40.000 0.00 0.00 0.00 2.27
5178 6404 2.969821 TCAGCTGGTTTTGGGTACAT 57.030 45.000 15.13 0.00 0.00 2.29
5216 6442 3.719173 AAAGGAAATTCGGCGTTCAAA 57.281 38.095 6.85 0.00 0.00 2.69
5252 6478 9.461312 AACCTTCTTATATGCATTAGTTTGACA 57.539 29.630 3.54 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.695526 TTCATTCAATTCTGGTTAATCTGTTTG 57.304 29.630 0.00 0.00 0.00 2.93
2 3 9.865321 CATTCATTCAATTCTGGTTAATCTGTT 57.135 29.630 0.00 0.00 0.00 3.16
3 4 9.028284 ACATTCATTCAATTCTGGTTAATCTGT 57.972 29.630 0.00 0.00 0.00 3.41
4 5 9.297586 CACATTCATTCAATTCTGGTTAATCTG 57.702 33.333 0.00 0.00 0.00 2.90
5 6 8.472413 CCACATTCATTCAATTCTGGTTAATCT 58.528 33.333 0.00 0.00 0.00 2.40
6 7 7.707893 CCCACATTCATTCAATTCTGGTTAATC 59.292 37.037 0.00 0.00 0.00 1.75
7 8 7.180766 ACCCACATTCATTCAATTCTGGTTAAT 59.819 33.333 0.00 0.00 0.00 1.40
8 9 6.496565 ACCCACATTCATTCAATTCTGGTTAA 59.503 34.615 0.00 0.00 0.00 2.01
9 10 6.015918 ACCCACATTCATTCAATTCTGGTTA 58.984 36.000 0.00 0.00 0.00 2.85
10 11 4.840115 ACCCACATTCATTCAATTCTGGTT 59.160 37.500 0.00 0.00 0.00 3.67
11 12 4.419282 ACCCACATTCATTCAATTCTGGT 58.581 39.130 0.00 0.00 0.00 4.00
12 13 5.887598 TCTACCCACATTCATTCAATTCTGG 59.112 40.000 0.00 0.00 0.00 3.86
13 14 7.395190 TTCTACCCACATTCATTCAATTCTG 57.605 36.000 0.00 0.00 0.00 3.02
14 15 8.421249 TTTTCTACCCACATTCATTCAATTCT 57.579 30.769 0.00 0.00 0.00 2.40
15 16 9.143631 CTTTTTCTACCCACATTCATTCAATTC 57.856 33.333 0.00 0.00 0.00 2.17
16 17 8.869109 TCTTTTTCTACCCACATTCATTCAATT 58.131 29.630 0.00 0.00 0.00 2.32
17 18 8.421249 TCTTTTTCTACCCACATTCATTCAAT 57.579 30.769 0.00 0.00 0.00 2.57
18 19 7.831691 TCTTTTTCTACCCACATTCATTCAA 57.168 32.000 0.00 0.00 0.00 2.69
19 20 7.505585 AGTTCTTTTTCTACCCACATTCATTCA 59.494 33.333 0.00 0.00 0.00 2.57
20 21 7.886338 AGTTCTTTTTCTACCCACATTCATTC 58.114 34.615 0.00 0.00 0.00 2.67
21 22 7.839680 AGTTCTTTTTCTACCCACATTCATT 57.160 32.000 0.00 0.00 0.00 2.57
22 23 7.505585 TGAAGTTCTTTTTCTACCCACATTCAT 59.494 33.333 4.17 0.00 0.00 2.57
23 24 6.831353 TGAAGTTCTTTTTCTACCCACATTCA 59.169 34.615 4.17 0.00 0.00 2.57
24 25 7.272037 TGAAGTTCTTTTTCTACCCACATTC 57.728 36.000 4.17 0.00 0.00 2.67
25 26 7.505585 TCATGAAGTTCTTTTTCTACCCACATT 59.494 33.333 4.17 0.00 0.00 2.71
26 27 7.004086 TCATGAAGTTCTTTTTCTACCCACAT 58.996 34.615 4.17 0.00 0.00 3.21
27 28 6.361433 TCATGAAGTTCTTTTTCTACCCACA 58.639 36.000 4.17 0.00 0.00 4.17
28 29 6.486993 ACTCATGAAGTTCTTTTTCTACCCAC 59.513 38.462 4.17 0.00 33.03 4.61
29 30 6.601332 ACTCATGAAGTTCTTTTTCTACCCA 58.399 36.000 4.17 0.00 33.03 4.51
30 31 7.511959 AACTCATGAAGTTCTTTTTCTACCC 57.488 36.000 4.17 0.00 45.28 3.69
50 51 4.080863 TCCCTATGAGCAAGAGGAAAACTC 60.081 45.833 1.86 0.00 46.98 3.01
98 99 1.820519 GCACTTTGCCTCCATCATCAA 59.179 47.619 0.00 0.00 37.42 2.57
99 100 1.466856 GCACTTTGCCTCCATCATCA 58.533 50.000 0.00 0.00 37.42 3.07
104 105 0.036164 TGTACGCACTTTGCCTCCAT 59.964 50.000 0.00 0.00 41.12 3.41
117 118 4.752879 TGCCGCCCTCTTGTACGC 62.753 66.667 0.00 0.00 0.00 4.42
130 131 3.294493 CCTTTGGGTGTGGTGCCG 61.294 66.667 0.00 0.00 0.00 5.69
175 176 3.787001 GCTTCCTAGGCCCGCTGT 61.787 66.667 2.96 0.00 0.00 4.40
177 178 3.474570 CTGCTTCCTAGGCCCGCT 61.475 66.667 2.96 0.00 0.00 5.52
178 179 1.472662 TATCTGCTTCCTAGGCCCGC 61.473 60.000 2.96 6.86 0.00 6.13
230 231 0.389426 TTCAACCGTCTAGCGCCTTC 60.389 55.000 2.29 0.00 39.71 3.46
236 237 4.109050 CTCTCATCTTTCAACCGTCTAGC 58.891 47.826 0.00 0.00 0.00 3.42
261 262 1.349026 CGATGGTCATAGGCTCCCAAT 59.651 52.381 0.00 0.00 0.00 3.16
318 319 1.699656 CTGCTCCGCAAATCGACCTG 61.700 60.000 0.00 0.00 38.41 4.00
356 365 3.607310 CGTAACTCTATGCTAGACCGCAG 60.607 52.174 0.00 0.00 44.10 5.18
370 379 2.480845 GCATTTATCGCCCGTAACTCT 58.519 47.619 0.00 0.00 0.00 3.24
381 390 2.221055 GCGTCTTGTAGGGCATTTATCG 59.779 50.000 0.00 0.00 0.00 2.92
388 397 1.003839 CTTGGCGTCTTGTAGGGCA 60.004 57.895 0.00 0.00 45.63 5.36
622 638 7.818446 ACTACATGCATGCAAATATTGAACAAA 59.182 29.630 26.68 0.00 0.00 2.83
623 639 7.321908 ACTACATGCATGCAAATATTGAACAA 58.678 30.769 26.68 5.94 0.00 2.83
628 644 9.634163 ATTATGACTACATGCATGCAAATATTG 57.366 29.630 26.68 20.00 37.87 1.90
658 674 4.899352 AATGAGAAGGAAGTAGCACAGT 57.101 40.909 0.00 0.00 0.00 3.55
659 675 5.486526 AGAAATGAGAAGGAAGTAGCACAG 58.513 41.667 0.00 0.00 0.00 3.66
667 683 4.763793 TGCAAGGAAGAAATGAGAAGGAAG 59.236 41.667 0.00 0.00 0.00 3.46
689 705 5.278604 CGGGATCATTAATATGCATGCATG 58.721 41.667 37.43 23.92 37.82 4.06
710 730 6.019762 GCTAATTTTTCTTCTCGTTAACCGG 58.980 40.000 0.00 0.00 37.11 5.28
719 739 7.936950 ACTTTGCAAGCTAATTTTTCTTCTC 57.063 32.000 0.00 0.00 0.00 2.87
764 874 5.185056 GGCCACAAACTTAAATGACAGGTAT 59.815 40.000 0.00 0.00 0.00 2.73
767 877 3.573967 AGGCCACAAACTTAAATGACAGG 59.426 43.478 5.01 0.00 0.00 4.00
772 882 7.759433 CCTTATACAAGGCCACAAACTTAAATG 59.241 37.037 5.01 0.00 44.90 2.32
788 898 7.951245 AGTACTCCCTCTATTCCCTTATACAAG 59.049 40.741 0.00 0.00 0.00 3.16
789 899 7.834046 AGTACTCCCTCTATTCCCTTATACAA 58.166 38.462 0.00 0.00 0.00 2.41
790 900 7.417811 AGTACTCCCTCTATTCCCTTATACA 57.582 40.000 0.00 0.00 0.00 2.29
792 902 9.192129 ACTAAGTACTCCCTCTATTCCCTTATA 57.808 37.037 0.00 0.00 0.00 0.98
793 903 8.071235 ACTAAGTACTCCCTCTATTCCCTTAT 57.929 38.462 0.00 0.00 0.00 1.73
798 908 8.640651 CCTTAAACTAAGTACTCCCTCTATTCC 58.359 40.741 0.00 0.00 33.96 3.01
799 909 8.640651 CCCTTAAACTAAGTACTCCCTCTATTC 58.359 40.741 0.00 0.00 33.96 1.75
888 1848 4.436183 GCTTCTCATGTTTAAAGCGAGGAC 60.436 45.833 8.03 0.00 35.29 3.85
893 1853 3.492313 GGTGCTTCTCATGTTTAAAGCG 58.508 45.455 14.55 0.00 45.49 4.68
904 1864 0.105224 TTTCCGTTCGGTGCTTCTCA 59.895 50.000 11.04 0.00 0.00 3.27
911 1871 1.333435 CCTTTTCGTTTCCGTTCGGTG 60.333 52.381 11.04 1.08 35.01 4.94
914 1874 2.600556 GGTTCCTTTTCGTTTCCGTTCG 60.601 50.000 0.00 0.00 35.01 3.95
918 1878 1.310904 TGGGTTCCTTTTCGTTTCCG 58.689 50.000 0.00 0.00 0.00 4.30
920 1880 2.545113 GGCTTGGGTTCCTTTTCGTTTC 60.545 50.000 0.00 0.00 0.00 2.78
924 1884 1.579429 CGGCTTGGGTTCCTTTTCG 59.421 57.895 0.00 0.00 0.00 3.46
943 1903 4.506255 CGATGGGAGGGGGTTGGC 62.506 72.222 0.00 0.00 0.00 4.52
946 1906 2.666098 CGAACGATGGGAGGGGGTT 61.666 63.158 0.00 0.00 0.00 4.11
947 1907 3.081409 CGAACGATGGGAGGGGGT 61.081 66.667 0.00 0.00 0.00 4.95
949 1909 4.547367 GGCGAACGATGGGAGGGG 62.547 72.222 0.00 0.00 0.00 4.79
951 1911 0.105964 TTATGGCGAACGATGGGAGG 59.894 55.000 0.00 0.00 0.00 4.30
952 1912 1.948104 TTTATGGCGAACGATGGGAG 58.052 50.000 0.00 0.00 0.00 4.30
953 1913 2.011222 GTTTTATGGCGAACGATGGGA 58.989 47.619 0.00 0.00 0.00 4.37
1036 2001 2.281484 CCCGTGGTGGAACAGGTG 60.281 66.667 0.00 0.00 41.80 4.00
1298 2264 2.169832 TCCTGTTGAGCCGAGAAAAG 57.830 50.000 0.00 0.00 0.00 2.27
1419 2385 2.743928 CAAGGACAGCAGCCGGTC 60.744 66.667 1.90 6.31 35.73 4.79
1608 2622 9.979270 GTCTACAACATAGATTCAGAATTGTTG 57.021 33.333 25.02 25.02 45.72 3.33
1609 2623 9.725019 TGTCTACAACATAGATTCAGAATTGTT 57.275 29.630 6.03 6.03 31.20 2.83
1610 2624 9.896645 ATGTCTACAACATAGATTCAGAATTGT 57.103 29.630 0.00 0.24 46.95 2.71
1726 2740 0.610174 CTAGGAGTTGACAGCAGCCA 59.390 55.000 4.51 0.00 0.00 4.75
1781 2795 9.859427 CAGGCTTGTGATTTCTATCAAAATTAA 57.141 29.630 0.00 0.00 42.23 1.40
1784 2798 6.127253 CCCAGGCTTGTGATTTCTATCAAAAT 60.127 38.462 0.00 0.00 42.23 1.82
1851 2865 2.216898 GGCTGCTAGCACAAATAGGAG 58.783 52.381 14.93 1.50 44.75 3.69
1930 2944 9.686683 ACCAATAAGTAGAATACAAAAGCATCT 57.313 29.630 0.00 0.00 46.26 2.90
2019 3033 6.291377 AGAGCCGTGATAATATTGACACAAT 58.709 36.000 19.28 0.00 33.56 2.71
2111 3125 7.043391 GGTTTCAAGCACAAAAGTAAGTTCATC 60.043 37.037 0.00 0.00 0.00 2.92
2444 3461 9.855021 AAGATTTGGGACATTAAGAAATAAACG 57.145 29.630 0.00 0.00 39.30 3.60
2507 3524 8.252964 AGATACGAACCACAATTCTAGAAAAC 57.747 34.615 9.71 0.00 0.00 2.43
2508 3525 8.842358 AAGATACGAACCACAATTCTAGAAAA 57.158 30.769 9.71 0.00 0.00 2.29
3356 4373 3.340928 CAATCATGAGAGCAACACCTCA 58.659 45.455 0.09 0.00 42.78 3.86
3369 4386 4.452795 CCAACAAATTTGCAGCAATCATGA 59.547 37.500 18.12 0.00 0.00 3.07
3669 4686 2.233605 TAGGGGCACGATGTCGGTTG 62.234 60.000 7.38 0.00 44.95 3.77
3711 4728 1.064017 GGCCAAATGGTAGGTGATCCA 60.064 52.381 0.00 0.00 37.57 3.41
3852 4869 0.608640 AGTGCCGATTCGAGAAACCT 59.391 50.000 7.83 0.00 0.00 3.50
3946 4963 3.843027 CCATCCTGCCTCCTATCAATACT 59.157 47.826 0.00 0.00 0.00 2.12
4147 5164 9.135843 CAACGTTTCTAACAGAGATATTACACA 57.864 33.333 0.00 0.00 32.88 3.72
4153 5170 7.488471 GCACTACAACGTTTCTAACAGAGATAT 59.512 37.037 0.00 0.00 32.88 1.63
4157 5174 4.743151 TGCACTACAACGTTTCTAACAGAG 59.257 41.667 0.00 0.00 0.00 3.35
4242 5281 2.874701 CAGAACCACCTCACACAGAAAG 59.125 50.000 0.00 0.00 0.00 2.62
4329 5368 4.892934 AGTAACAGGGCATGAAGAACAAAA 59.107 37.500 5.99 0.00 0.00 2.44
4370 5432 7.552458 TGAAATAGCTCTCGCATCAATAAAA 57.448 32.000 0.00 0.00 39.10 1.52
4420 5482 2.490903 GACGAAGGGAGTACAGCACTAA 59.509 50.000 0.00 0.00 37.72 2.24
4422 5484 0.889306 GACGAAGGGAGTACAGCACT 59.111 55.000 0.00 0.00 41.47 4.40
4426 5488 0.679002 TCCGGACGAAGGGAGTACAG 60.679 60.000 0.00 0.00 0.00 2.74
4427 5489 0.251297 TTCCGGACGAAGGGAGTACA 60.251 55.000 1.83 0.00 33.01 2.90
4428 5490 0.890683 TTTCCGGACGAAGGGAGTAC 59.109 55.000 1.83 0.00 33.01 2.73
4429 5491 1.856629 ATTTCCGGACGAAGGGAGTA 58.143 50.000 1.83 0.00 33.01 2.59
4430 5492 1.479730 GTATTTCCGGACGAAGGGAGT 59.520 52.381 1.83 0.00 33.01 3.85
4431 5493 1.755380 AGTATTTCCGGACGAAGGGAG 59.245 52.381 1.83 0.00 33.01 4.30
4432 5494 1.856629 AGTATTTCCGGACGAAGGGA 58.143 50.000 1.83 0.00 0.00 4.20
4433 5495 2.277084 CAAGTATTTCCGGACGAAGGG 58.723 52.381 1.83 0.00 0.00 3.95
4434 5496 2.928116 GACAAGTATTTCCGGACGAAGG 59.072 50.000 1.83 0.00 0.00 3.46
4435 5497 3.581755 TGACAAGTATTTCCGGACGAAG 58.418 45.455 1.83 0.00 0.00 3.79
4436 5498 3.663995 TGACAAGTATTTCCGGACGAA 57.336 42.857 1.83 0.00 0.00 3.85
4437 5499 3.880047 ATGACAAGTATTTCCGGACGA 57.120 42.857 1.83 0.00 0.00 4.20
4438 5500 3.930229 TCAATGACAAGTATTTCCGGACG 59.070 43.478 1.83 0.00 0.00 4.79
4439 5501 5.873179 TTCAATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 0.00 4.79
4440 5502 6.127758 CCATTTCAATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 38.70 5.14
4441 5503 6.035843 CCATTTCAATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 38.70 5.14
4442 5504 6.851609 TCCATTTCAATGACAAGTATTTCCG 58.148 36.000 0.81 0.00 38.70 4.30
4443 5505 8.253113 ACATCCATTTCAATGACAAGTATTTCC 58.747 33.333 0.81 0.00 38.70 3.13
4447 5509 9.857656 AGATACATCCATTTCAATGACAAGTAT 57.142 29.630 0.81 4.50 38.70 2.12
4449 5511 9.334947 CTAGATACATCCATTTCAATGACAAGT 57.665 33.333 0.81 0.00 38.70 3.16
4450 5512 9.551734 TCTAGATACATCCATTTCAATGACAAG 57.448 33.333 0.81 0.00 38.70 3.16
4453 5515 9.499479 ACATCTAGATACATCCATTTCAATGAC 57.501 33.333 4.54 0.00 38.70 3.06
4485 5547 9.685276 TGGATGAAAATTGATGTATCTACAACT 57.315 29.630 0.00 0.00 39.99 3.16
4506 5568 9.297586 CAGAAATACTTGTCATCAAAATGGATG 57.702 33.333 0.00 0.00 44.78 3.51
4507 5569 8.472413 CCAGAAATACTTGTCATCAAAATGGAT 58.528 33.333 0.00 0.00 33.42 3.41
4508 5570 7.669304 TCCAGAAATACTTGTCATCAAAATGGA 59.331 33.333 0.00 0.00 33.42 3.41
4509 5571 7.756722 GTCCAGAAATACTTGTCATCAAAATGG 59.243 37.037 0.00 0.00 33.42 3.16
4510 5572 7.482743 CGTCCAGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
4511 5573 7.362056 CCGTCCAGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 32.87 1.82
4512 5574 6.072728 CCGTCCAGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 32.87 2.44
4513 5575 5.411361 CCGTCCAGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 32.87 2.69
4514 5576 4.935205 CCGTCCAGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 0.00 2.57
4515 5577 4.221924 TCCGTCCAGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 0.00 3.07
4516 5578 4.755411 TCCGTCCAGAAATACTTGTCATC 58.245 43.478 0.00 0.00 0.00 2.92
4517 5579 4.383118 CCTCCGTCCAGAAATACTTGTCAT 60.383 45.833 0.00 0.00 0.00 3.06
4518 5580 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
4519 5581 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
4520 5582 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
4521 5583 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
4522 5584 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
4523 5585 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
4524 5586 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
4525 5587 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
4526 5588 2.108970 GTACTCCCTCCGTCCAGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
4527 5589 1.076677 AGTACTCCCTCCGTCCAGAAA 59.923 52.381 0.00 0.00 0.00 2.52
4528 5590 0.702902 AGTACTCCCTCCGTCCAGAA 59.297 55.000 0.00 0.00 0.00 3.02
4529 5591 1.588239 TAGTACTCCCTCCGTCCAGA 58.412 55.000 0.00 0.00 0.00 3.86
4530 5592 2.660670 ATAGTACTCCCTCCGTCCAG 57.339 55.000 0.00 0.00 0.00 3.86
4531 5593 3.393426 AAATAGTACTCCCTCCGTCCA 57.607 47.619 0.00 0.00 0.00 4.02
4532 5594 5.136105 TCTAAAATAGTACTCCCTCCGTCC 58.864 45.833 0.00 0.00 0.00 4.79
4533 5595 5.278414 GCTCTAAAATAGTACTCCCTCCGTC 60.278 48.000 0.00 0.00 0.00 4.79
4534 5596 4.583907 GCTCTAAAATAGTACTCCCTCCGT 59.416 45.833 0.00 0.00 0.00 4.69
4535 5597 4.828387 AGCTCTAAAATAGTACTCCCTCCG 59.172 45.833 0.00 0.00 0.00 4.63
4536 5598 8.425237 AATAGCTCTAAAATAGTACTCCCTCC 57.575 38.462 0.00 0.00 0.00 4.30
4537 5599 9.917129 GAAATAGCTCTAAAATAGTACTCCCTC 57.083 37.037 0.00 0.00 0.00 4.30
4538 5600 9.435570 TGAAATAGCTCTAAAATAGTACTCCCT 57.564 33.333 0.00 0.00 0.00 4.20
4564 5626 6.819649 CCCTTGCACATTGTCAATCAATTAAT 59.180 34.615 0.00 0.00 43.33 1.40
4585 5647 1.866269 CCCTTCCCCCATTATTCCCTT 59.134 52.381 0.00 0.00 0.00 3.95
4589 5651 3.305720 GTTTCCCCTTCCCCCATTATTC 58.694 50.000 0.00 0.00 0.00 1.75
4673 5757 2.818432 ACGTCACTGGGAGTACTACTTG 59.182 50.000 4.77 0.74 0.00 3.16
4674 5758 2.818432 CACGTCACTGGGAGTACTACTT 59.182 50.000 4.77 0.00 0.00 2.24
4675 5759 2.434428 CACGTCACTGGGAGTACTACT 58.566 52.381 4.77 0.00 0.00 2.57
4676 5760 1.135460 GCACGTCACTGGGAGTACTAC 60.135 57.143 0.00 0.00 0.00 2.73
4677 5761 1.171308 GCACGTCACTGGGAGTACTA 58.829 55.000 0.00 0.00 0.00 1.82
4678 5762 0.826256 TGCACGTCACTGGGAGTACT 60.826 55.000 0.00 0.00 0.00 2.73
4680 5764 0.826256 ACTGCACGTCACTGGGAGTA 60.826 55.000 0.00 0.00 31.09 2.59
4681 5765 1.686325 AACTGCACGTCACTGGGAGT 61.686 55.000 0.00 0.00 34.52 3.85
4682 5766 0.532862 AAACTGCACGTCACTGGGAG 60.533 55.000 0.00 0.00 0.00 4.30
4684 5768 1.648720 CAAACTGCACGTCACTGGG 59.351 57.895 0.00 0.00 0.00 4.45
4685 5769 1.009675 GCAAACTGCACGTCACTGG 60.010 57.895 0.00 0.00 44.26 4.00
4686 5770 4.595629 GCAAACTGCACGTCACTG 57.404 55.556 0.00 0.00 44.26 3.66
4718 5897 9.442047 AGATCCTACAGTTAATTTCAGTTCTTG 57.558 33.333 0.00 0.00 0.00 3.02
4723 5902 8.611051 ACCTAGATCCTACAGTTAATTTCAGT 57.389 34.615 0.00 0.00 0.00 3.41
4736 5915 6.568844 CGCAATGAAGTAGACCTAGATCCTAC 60.569 46.154 0.00 0.00 34.52 3.18
4742 5921 3.628008 TCCGCAATGAAGTAGACCTAGA 58.372 45.455 0.00 0.00 0.00 2.43
4743 5922 4.386867 TTCCGCAATGAAGTAGACCTAG 57.613 45.455 0.00 0.00 0.00 3.02
4744 5923 4.811969 TTTCCGCAATGAAGTAGACCTA 57.188 40.909 0.00 0.00 0.00 3.08
4745 5924 3.695830 TTTCCGCAATGAAGTAGACCT 57.304 42.857 0.00 0.00 0.00 3.85
4746 5925 3.938963 TGATTTCCGCAATGAAGTAGACC 59.061 43.478 0.00 0.00 0.00 3.85
4747 5926 5.505286 CATGATTTCCGCAATGAAGTAGAC 58.495 41.667 0.00 0.00 0.00 2.59
4748 5927 4.035558 GCATGATTTCCGCAATGAAGTAGA 59.964 41.667 0.00 0.00 0.00 2.59
4752 5931 3.113322 CAGCATGATTTCCGCAATGAAG 58.887 45.455 0.00 0.00 39.69 3.02
4805 6016 1.290203 AATATGAGTTGCACTCCGCG 58.710 50.000 0.00 0.00 44.44 6.46
4822 6033 2.436911 AGATTACGAACGGGGCCTAAAT 59.563 45.455 0.84 0.00 0.00 1.40
4823 6034 1.832998 AGATTACGAACGGGGCCTAAA 59.167 47.619 0.84 0.00 0.00 1.85
4824 6035 1.410153 GAGATTACGAACGGGGCCTAA 59.590 52.381 0.84 0.00 0.00 2.69
4825 6036 1.035139 GAGATTACGAACGGGGCCTA 58.965 55.000 0.84 0.00 0.00 3.93
4826 6037 0.686769 AGAGATTACGAACGGGGCCT 60.687 55.000 0.84 0.00 0.00 5.19
4827 6038 0.249363 GAGAGATTACGAACGGGGCC 60.249 60.000 0.00 0.00 0.00 5.80
4828 6039 0.745468 AGAGAGATTACGAACGGGGC 59.255 55.000 0.00 0.00 0.00 5.80
4829 6040 2.688958 AGAAGAGAGATTACGAACGGGG 59.311 50.000 0.00 0.00 0.00 5.73
4830 6041 3.243134 GGAGAAGAGAGATTACGAACGGG 60.243 52.174 0.00 0.00 0.00 5.28
4831 6042 3.377485 TGGAGAAGAGAGATTACGAACGG 59.623 47.826 0.00 0.00 0.00 4.44
4832 6043 4.095185 AGTGGAGAAGAGAGATTACGAACG 59.905 45.833 0.00 0.00 0.00 3.95
4833 6044 5.449451 GGAGTGGAGAAGAGAGATTACGAAC 60.449 48.000 0.00 0.00 0.00 3.95
4834 6045 4.641094 GGAGTGGAGAAGAGAGATTACGAA 59.359 45.833 0.00 0.00 0.00 3.85
4835 6046 4.200874 GGAGTGGAGAAGAGAGATTACGA 58.799 47.826 0.00 0.00 0.00 3.43
4836 6047 3.002862 CGGAGTGGAGAAGAGAGATTACG 59.997 52.174 0.00 0.00 0.00 3.18
4837 6048 3.243267 GCGGAGTGGAGAAGAGAGATTAC 60.243 52.174 0.00 0.00 0.00 1.89
4838 6049 2.952978 GCGGAGTGGAGAAGAGAGATTA 59.047 50.000 0.00 0.00 0.00 1.75
4839 6050 1.754226 GCGGAGTGGAGAAGAGAGATT 59.246 52.381 0.00 0.00 0.00 2.40
4840 6051 1.398692 GCGGAGTGGAGAAGAGAGAT 58.601 55.000 0.00 0.00 0.00 2.75
4841 6052 1.027255 CGCGGAGTGGAGAAGAGAGA 61.027 60.000 0.00 0.00 0.00 3.10
4842 6053 1.431440 CGCGGAGTGGAGAAGAGAG 59.569 63.158 0.00 0.00 0.00 3.20
4843 6054 3.592070 CGCGGAGTGGAGAAGAGA 58.408 61.111 0.00 0.00 0.00 3.10
4854 6065 3.649277 CTCCACCAACTCCGCGGAG 62.649 68.421 45.26 45.26 46.91 4.63
4855 6066 3.691342 CTCCACCAACTCCGCGGA 61.691 66.667 29.03 29.03 0.00 5.54
4857 6068 4.379243 AGCTCCACCAACTCCGCG 62.379 66.667 0.00 0.00 0.00 6.46
4858 6069 2.435059 GAGCTCCACCAACTCCGC 60.435 66.667 0.87 0.00 0.00 5.54
4859 6070 2.125912 CGAGCTCCACCAACTCCG 60.126 66.667 8.47 0.00 0.00 4.63
4860 6071 2.266055 CCGAGCTCCACCAACTCC 59.734 66.667 8.47 0.00 0.00 3.85
4861 6072 1.079750 GACCGAGCTCCACCAACTC 60.080 63.158 8.47 0.00 0.00 3.01
4862 6073 1.122019 AAGACCGAGCTCCACCAACT 61.122 55.000 8.47 0.00 0.00 3.16
4863 6074 0.250338 AAAGACCGAGCTCCACCAAC 60.250 55.000 8.47 0.00 0.00 3.77
4864 6075 0.250295 CAAAGACCGAGCTCCACCAA 60.250 55.000 8.47 0.00 0.00 3.67
4865 6076 1.371183 CAAAGACCGAGCTCCACCA 59.629 57.895 8.47 0.00 0.00 4.17
4866 6077 2.035442 GCAAAGACCGAGCTCCACC 61.035 63.158 8.47 0.00 0.00 4.61
4867 6078 1.294659 CTGCAAAGACCGAGCTCCAC 61.295 60.000 8.47 0.00 0.00 4.02
4868 6079 1.004560 CTGCAAAGACCGAGCTCCA 60.005 57.895 8.47 0.00 0.00 3.86
4869 6080 2.394563 GCTGCAAAGACCGAGCTCC 61.395 63.158 8.47 0.00 0.00 4.70
4870 6081 1.375268 AGCTGCAAAGACCGAGCTC 60.375 57.895 2.73 2.73 37.17 4.09
4871 6082 1.375268 GAGCTGCAAAGACCGAGCT 60.375 57.895 1.02 0.00 44.50 4.09
4872 6083 1.375268 AGAGCTGCAAAGACCGAGC 60.375 57.895 1.02 0.00 0.00 5.03
4873 6084 0.320247 ACAGAGCTGCAAAGACCGAG 60.320 55.000 1.02 0.00 0.00 4.63
4874 6085 0.106708 AACAGAGCTGCAAAGACCGA 59.893 50.000 1.02 0.00 0.00 4.69
4875 6086 1.795768 TAACAGAGCTGCAAAGACCG 58.204 50.000 1.02 0.00 0.00 4.79
4876 6087 3.565902 ACTTTAACAGAGCTGCAAAGACC 59.434 43.478 21.96 0.00 38.36 3.85
4877 6088 4.273480 TCACTTTAACAGAGCTGCAAAGAC 59.727 41.667 21.96 0.00 38.36 3.01
4878 6089 4.450976 TCACTTTAACAGAGCTGCAAAGA 58.549 39.130 21.96 7.24 38.36 2.52
4879 6090 4.320057 CCTCACTTTAACAGAGCTGCAAAG 60.320 45.833 17.04 17.04 39.66 2.77
4880 6091 3.565482 CCTCACTTTAACAGAGCTGCAAA 59.435 43.478 1.02 0.00 0.00 3.68
4881 6092 3.141398 CCTCACTTTAACAGAGCTGCAA 58.859 45.455 1.02 0.00 0.00 4.08
4882 6093 2.104792 ACCTCACTTTAACAGAGCTGCA 59.895 45.455 1.02 0.00 0.00 4.41
4883 6094 2.739379 GACCTCACTTTAACAGAGCTGC 59.261 50.000 0.00 0.00 0.00 5.25
4884 6095 3.330267 GGACCTCACTTTAACAGAGCTG 58.670 50.000 0.00 0.00 0.00 4.24
4885 6096 2.028930 CGGACCTCACTTTAACAGAGCT 60.029 50.000 0.00 0.00 0.00 4.09
4886 6097 2.338500 CGGACCTCACTTTAACAGAGC 58.662 52.381 0.00 0.00 0.00 4.09
4887 6098 2.028930 AGCGGACCTCACTTTAACAGAG 60.029 50.000 0.00 0.00 0.00 3.35
4888 6099 1.968493 AGCGGACCTCACTTTAACAGA 59.032 47.619 0.00 0.00 0.00 3.41
4889 6100 2.338500 GAGCGGACCTCACTTTAACAG 58.662 52.381 0.00 0.00 40.45 3.16
4890 6101 1.001633 GGAGCGGACCTCACTTTAACA 59.998 52.381 0.00 0.00 42.62 2.41
4891 6102 1.723220 GGAGCGGACCTCACTTTAAC 58.277 55.000 0.00 0.00 42.62 2.01
4892 6103 0.245539 CGGAGCGGACCTCACTTTAA 59.754 55.000 0.00 0.00 42.62 1.52
4893 6104 1.888018 CGGAGCGGACCTCACTTTA 59.112 57.895 0.00 0.00 42.62 1.85
4894 6105 2.657237 CGGAGCGGACCTCACTTT 59.343 61.111 0.00 0.00 42.62 2.66
4908 6119 1.005569 TCTCTTAACTCTGCTCCCGGA 59.994 52.381 0.73 0.00 0.00 5.14
4909 6120 1.407258 CTCTCTTAACTCTGCTCCCGG 59.593 57.143 0.00 0.00 0.00 5.73
4910 6121 1.202359 GCTCTCTTAACTCTGCTCCCG 60.202 57.143 0.00 0.00 0.00 5.14
4911 6122 1.202359 CGCTCTCTTAACTCTGCTCCC 60.202 57.143 0.00 0.00 0.00 4.30
4912 6123 1.202359 CCGCTCTCTTAACTCTGCTCC 60.202 57.143 0.00 0.00 0.00 4.70
4913 6124 1.746220 TCCGCTCTCTTAACTCTGCTC 59.254 52.381 0.00 0.00 0.00 4.26
4914 6125 1.748493 CTCCGCTCTCTTAACTCTGCT 59.252 52.381 0.00 0.00 0.00 4.24
4915 6126 1.746220 TCTCCGCTCTCTTAACTCTGC 59.254 52.381 0.00 0.00 0.00 4.26
4916 6127 2.357637 CCTCTCCGCTCTCTTAACTCTG 59.642 54.545 0.00 0.00 0.00 3.35
4917 6128 2.240160 TCCTCTCCGCTCTCTTAACTCT 59.760 50.000 0.00 0.00 0.00 3.24
4918 6129 2.645802 TCCTCTCCGCTCTCTTAACTC 58.354 52.381 0.00 0.00 0.00 3.01
4919 6130 2.756207 GTTCCTCTCCGCTCTCTTAACT 59.244 50.000 0.00 0.00 0.00 2.24
4920 6131 2.159212 GGTTCCTCTCCGCTCTCTTAAC 60.159 54.545 0.00 0.00 0.00 2.01
4921 6132 2.100989 GGTTCCTCTCCGCTCTCTTAA 58.899 52.381 0.00 0.00 0.00 1.85
4922 6133 1.765230 GGTTCCTCTCCGCTCTCTTA 58.235 55.000 0.00 0.00 0.00 2.10
4923 6134 1.316706 CGGTTCCTCTCCGCTCTCTT 61.317 60.000 0.00 0.00 41.48 2.85
4924 6135 1.751162 CGGTTCCTCTCCGCTCTCT 60.751 63.158 0.00 0.00 41.48 3.10
4925 6136 1.313812 TTCGGTTCCTCTCCGCTCTC 61.314 60.000 0.00 0.00 46.49 3.20
4926 6137 1.304217 TTCGGTTCCTCTCCGCTCT 60.304 57.895 0.00 0.00 46.49 4.09
4927 6138 1.153804 GTTCGGTTCCTCTCCGCTC 60.154 63.158 0.00 0.00 46.49 5.03
4928 6139 2.971452 GTTCGGTTCCTCTCCGCT 59.029 61.111 0.00 0.00 46.49 5.52
4929 6140 2.506438 CGTTCGGTTCCTCTCCGC 60.506 66.667 0.00 0.00 46.49 5.54
4931 6142 1.153804 GAGCGTTCGGTTCCTCTCC 60.154 63.158 0.00 0.00 0.00 3.71
4932 6143 1.153804 GGAGCGTTCGGTTCCTCTC 60.154 63.158 0.00 0.00 42.39 3.20
4933 6144 2.647158 GGGAGCGTTCGGTTCCTCT 61.647 63.158 13.58 0.00 44.86 3.69
4934 6145 2.125633 GGGAGCGTTCGGTTCCTC 60.126 66.667 13.58 2.45 44.86 3.71
4935 6146 0.901580 TAAGGGAGCGTTCGGTTCCT 60.902 55.000 17.09 17.09 44.86 3.36
4936 6147 0.037046 TTAAGGGAGCGTTCGGTTCC 60.037 55.000 13.06 13.06 44.77 3.62
4937 6148 2.019948 ATTAAGGGAGCGTTCGGTTC 57.980 50.000 0.00 0.00 0.00 3.62
4938 6149 2.081462 CAATTAAGGGAGCGTTCGGTT 58.919 47.619 0.00 0.00 0.00 4.44
4939 6150 1.002773 ACAATTAAGGGAGCGTTCGGT 59.997 47.619 0.00 0.00 0.00 4.69
4940 6151 1.396996 CACAATTAAGGGAGCGTTCGG 59.603 52.381 0.00 0.00 0.00 4.30
4941 6152 1.202031 GCACAATTAAGGGAGCGTTCG 60.202 52.381 0.00 0.00 0.00 3.95
4942 6153 2.084546 AGCACAATTAAGGGAGCGTTC 58.915 47.619 0.00 0.00 0.00 3.95
4943 6154 2.200373 AGCACAATTAAGGGAGCGTT 57.800 45.000 0.00 0.00 0.00 4.84
4944 6155 3.467803 GATAGCACAATTAAGGGAGCGT 58.532 45.455 0.00 0.00 0.00 5.07
4945 6156 2.476619 CGATAGCACAATTAAGGGAGCG 59.523 50.000 0.00 0.00 0.00 5.03
4986 6197 7.200434 AGAAAGGGCTCTACAAGATATTTGA 57.800 36.000 0.00 0.00 0.00 2.69
5062 6273 7.587629 TGACTGAACAATCAAAATCTGTCATC 58.412 34.615 9.36 0.00 42.21 2.92
5123 6334 7.709613 ACAACGATCATACTGGATAAACCTTAC 59.290 37.037 0.00 0.00 39.86 2.34
5206 6432 0.953471 TGAGTGGGATTTGAACGCCG 60.953 55.000 0.00 0.00 0.00 6.46
5216 6442 6.064717 GCATATAAGAAGGTTTGAGTGGGAT 58.935 40.000 0.00 0.00 0.00 3.85
5252 6478 7.990886 ACCAGACGTTTTGGTCATATATGTATT 59.009 33.333 17.15 0.00 45.67 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.