Multiple sequence alignment - TraesCS1D01G236600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G236600 chr1D 100.000 3690 0 0 1349 5038 326009916 326013605 0.000000e+00 6815.0
1 TraesCS1D01G236600 chr1D 100.000 1192 0 0 1 1192 326008568 326009759 0.000000e+00 2202.0
2 TraesCS1D01G236600 chr1A 93.271 1293 67 12 3233 4511 416543410 416542124 0.000000e+00 1888.0
3 TraesCS1D01G236600 chr1A 92.543 818 36 7 1715 2530 416545789 416544995 0.000000e+00 1149.0
4 TraesCS1D01G236600 chr1A 94.620 632 29 4 2513 3142 416544111 416543483 0.000000e+00 974.0
5 TraesCS1D01G236600 chr1A 85.714 455 30 8 4535 4961 416541802 416541355 9.950000e-122 448.0
6 TraesCS1D01G236600 chr1A 92.147 191 11 4 1450 1640 416546001 416545815 2.990000e-67 267.0
7 TraesCS1D01G236600 chr1A 87.047 193 14 7 1001 1192 416546353 416546171 1.840000e-49 207.0
8 TraesCS1D01G236600 chr1A 100.000 42 0 0 3180 3221 416543494 416543453 1.500000e-10 78.7
9 TraesCS1D01G236600 chr1B 89.533 1070 72 24 3373 4415 439121609 439122665 0.000000e+00 1319.0
10 TraesCS1D01G236600 chr1B 94.845 485 16 3 1716 2198 439119443 439119920 0.000000e+00 749.0
11 TraesCS1D01G236600 chr1B 96.359 357 11 2 2848 3204 439119915 439120269 2.020000e-163 586.0
12 TraesCS1D01G236600 chr1B 86.861 274 22 10 1450 1713 439116589 439116858 1.370000e-75 294.0
13 TraesCS1D01G236600 chr1B 94.483 145 6 1 3239 3381 439120568 439120712 6.560000e-54 222.0
14 TraesCS1D01G236600 chr1B 86.364 198 12 10 996 1192 439116206 439116389 8.550000e-48 202.0
15 TraesCS1D01G236600 chr6D 90.965 974 62 17 1 961 428603038 428602078 0.000000e+00 1288.0
16 TraesCS1D01G236600 chr3D 90.890 977 63 18 1 960 596657116 596658083 0.000000e+00 1288.0
17 TraesCS1D01G236600 chr2D 90.798 978 64 18 1 965 103170343 103169379 0.000000e+00 1284.0
18 TraesCS1D01G236600 chr2D 90.853 973 64 20 1 961 497917384 497918343 0.000000e+00 1280.0
19 TraesCS1D01G236600 chr2D 80.778 437 60 16 1464 1894 386704756 386705174 2.260000e-83 320.0
20 TraesCS1D01G236600 chr7D 90.289 968 63 20 1 960 431340318 431339374 0.000000e+00 1238.0
21 TraesCS1D01G236600 chr7D 89.754 976 74 21 1 962 434163722 434162759 0.000000e+00 1225.0
22 TraesCS1D01G236600 chr6A 90.010 971 77 18 1 960 383968885 383969846 0.000000e+00 1238.0
23 TraesCS1D01G236600 chr5A 89.979 968 72 19 1 962 14248748 14247800 0.000000e+00 1227.0
24 TraesCS1D01G236600 chr5A 89.691 970 76 20 1 960 93188054 93187099 0.000000e+00 1216.0
25 TraesCS1D01G236600 chr2B 83.920 199 24 6 1464 1662 458073223 458073413 3.100000e-42 183.0
26 TraesCS1D01G236600 chr2B 82.938 211 27 7 1690 1899 458080133 458080335 1.110000e-41 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G236600 chr1D 326008568 326013605 5037 False 4508.500000 6815 100.000000 1 5038 2 chr1D.!!$F1 5037
1 TraesCS1D01G236600 chr1A 416541355 416546353 4998 True 715.957143 1888 92.191714 1001 4961 7 chr1A.!!$R1 3960
2 TraesCS1D01G236600 chr1B 439116206 439122665 6459 False 562.000000 1319 91.407500 996 4415 6 chr1B.!!$F1 3419
3 TraesCS1D01G236600 chr6D 428602078 428603038 960 True 1288.000000 1288 90.965000 1 961 1 chr6D.!!$R1 960
4 TraesCS1D01G236600 chr3D 596657116 596658083 967 False 1288.000000 1288 90.890000 1 960 1 chr3D.!!$F1 959
5 TraesCS1D01G236600 chr2D 103169379 103170343 964 True 1284.000000 1284 90.798000 1 965 1 chr2D.!!$R1 964
6 TraesCS1D01G236600 chr2D 497917384 497918343 959 False 1280.000000 1280 90.853000 1 961 1 chr2D.!!$F2 960
7 TraesCS1D01G236600 chr7D 431339374 431340318 944 True 1238.000000 1238 90.289000 1 960 1 chr7D.!!$R1 959
8 TraesCS1D01G236600 chr7D 434162759 434163722 963 True 1225.000000 1225 89.754000 1 962 1 chr7D.!!$R2 961
9 TraesCS1D01G236600 chr6A 383968885 383969846 961 False 1238.000000 1238 90.010000 1 960 1 chr6A.!!$F1 959
10 TraesCS1D01G236600 chr5A 14247800 14248748 948 True 1227.000000 1227 89.979000 1 962 1 chr5A.!!$R1 961
11 TraesCS1D01G236600 chr5A 93187099 93188054 955 True 1216.000000 1216 89.691000 1 960 1 chr5A.!!$R2 959

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 1017 0.181114 TGCTCCCGATAAAGCATGCT 59.819 50.000 16.30 16.3 43.30 3.79 F
1377 1423 0.030638 TCGTTTTCTTGCTTGCTGGC 59.969 50.000 0.00 0.0 0.00 4.85 F
1446 1492 0.033504 GGACCACGAAGAGAAGCACA 59.966 55.000 0.00 0.0 0.00 4.57 F
1631 1728 0.253044 GCAGGAGTATGGCCACTTCA 59.747 55.000 8.16 0.0 0.00 3.02 F
2680 6274 1.737793 GTCCACATGGTTTTCTAGGCG 59.262 52.381 0.00 0.0 36.34 5.52 F
3438 8205 2.007608 GGAATACGGTTGGTCTTGCTC 58.992 52.381 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2616 6210 1.555477 GTGTTTGCACGAAACCTTGG 58.445 50.000 0.00 0.0 43.04 3.61 R
2662 6256 1.821216 ACGCCTAGAAAACCATGTGG 58.179 50.000 0.00 0.0 42.17 4.17 R
3430 8197 1.268079 GCCTCACAAAAGGAGCAAGAC 59.732 52.381 0.00 0.0 38.87 3.01 R
3572 8346 2.094803 CCATAACAACCATGCGAGCAAA 60.095 45.455 0.57 0.0 0.00 3.68 R
3788 8565 0.107508 CCACATCAATCGAGGCACCT 60.108 55.000 0.00 0.0 0.00 4.00 R
4963 10096 0.035317 ATGGTTCTGAACAGCAGCGA 59.965 50.000 21.01 0.0 44.52 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 196 1.227853 GAAAGAGGCACACCCGTGT 60.228 57.895 0.00 0.00 45.50 4.49
251 256 1.241990 CCGTGACTCTCGTGGAAGGA 61.242 60.000 0.24 0.00 0.00 3.36
888 932 3.017656 GCGCGACACGTGGCAAATA 62.018 57.895 23.63 0.00 46.11 1.40
962 1007 2.756760 TCGTTAACTAGTTGCTCCCGAT 59.243 45.455 18.56 0.00 0.00 4.18
965 1010 5.104374 CGTTAACTAGTTGCTCCCGATAAA 58.896 41.667 18.56 0.00 0.00 1.40
966 1011 5.231568 CGTTAACTAGTTGCTCCCGATAAAG 59.768 44.000 18.56 0.00 0.00 1.85
967 1012 3.180891 ACTAGTTGCTCCCGATAAAGC 57.819 47.619 0.00 0.00 39.02 3.51
968 1013 2.500098 ACTAGTTGCTCCCGATAAAGCA 59.500 45.455 0.00 0.00 46.31 3.91
971 1016 2.706636 TGCTCCCGATAAAGCATGC 58.293 52.632 10.51 10.51 43.30 4.06
972 1017 0.181114 TGCTCCCGATAAAGCATGCT 59.819 50.000 16.30 16.30 43.30 3.79
973 1018 1.312815 GCTCCCGATAAAGCATGCTT 58.687 50.000 27.21 27.21 38.42 3.91
974 1019 1.265365 GCTCCCGATAAAGCATGCTTC 59.735 52.381 32.01 19.43 38.42 3.86
975 1020 2.843701 CTCCCGATAAAGCATGCTTCT 58.156 47.619 32.01 22.13 34.84 2.85
976 1021 3.209410 CTCCCGATAAAGCATGCTTCTT 58.791 45.455 32.01 21.93 34.84 2.52
977 1022 3.206150 TCCCGATAAAGCATGCTTCTTC 58.794 45.455 32.01 26.70 34.84 2.87
978 1023 3.118261 TCCCGATAAAGCATGCTTCTTCT 60.118 43.478 32.01 19.26 34.84 2.85
979 1024 3.629398 CCCGATAAAGCATGCTTCTTCTT 59.371 43.478 32.01 18.88 34.84 2.52
980 1025 4.096984 CCCGATAAAGCATGCTTCTTCTTT 59.903 41.667 32.01 18.17 34.84 2.52
981 1026 5.032863 CCGATAAAGCATGCTTCTTCTTTG 58.967 41.667 32.01 17.39 34.84 2.77
982 1027 5.032863 CGATAAAGCATGCTTCTTCTTTGG 58.967 41.667 32.01 14.64 34.84 3.28
983 1028 5.163723 CGATAAAGCATGCTTCTTCTTTGGA 60.164 40.000 32.01 10.17 34.84 3.53
984 1029 6.459298 CGATAAAGCATGCTTCTTCTTTGGAT 60.459 38.462 32.01 15.31 34.84 3.41
985 1030 5.479124 AAAGCATGCTTCTTCTTTGGATT 57.521 34.783 32.01 10.11 34.84 3.01
986 1031 5.479124 AAGCATGCTTCTTCTTTGGATTT 57.521 34.783 27.21 0.00 0.00 2.17
987 1032 4.817517 AGCATGCTTCTTCTTTGGATTTG 58.182 39.130 16.30 0.00 0.00 2.32
988 1033 3.930848 GCATGCTTCTTCTTTGGATTTGG 59.069 43.478 11.37 0.00 0.00 3.28
989 1034 4.322198 GCATGCTTCTTCTTTGGATTTGGA 60.322 41.667 11.37 0.00 0.00 3.53
990 1035 5.626116 GCATGCTTCTTCTTTGGATTTGGAT 60.626 40.000 11.37 0.00 0.00 3.41
991 1036 5.395682 TGCTTCTTCTTTGGATTTGGATG 57.604 39.130 0.00 0.00 0.00 3.51
992 1037 4.221262 TGCTTCTTCTTTGGATTTGGATGG 59.779 41.667 0.00 0.00 0.00 3.51
993 1038 4.463891 GCTTCTTCTTTGGATTTGGATGGA 59.536 41.667 0.00 0.00 0.00 3.41
994 1039 5.623141 GCTTCTTCTTTGGATTTGGATGGAC 60.623 44.000 0.00 0.00 0.00 4.02
1026 1071 1.067821 CTGATCTAACGGCCCAGAGAC 59.932 57.143 0.00 0.00 0.00 3.36
1032 1077 1.407656 AACGGCCCAGAGACAAGTGA 61.408 55.000 0.00 0.00 0.00 3.41
1070 1115 0.916809 CCTTCCCTATTTCACCCCGT 59.083 55.000 0.00 0.00 0.00 5.28
1071 1116 1.408266 CCTTCCCTATTTCACCCCGTG 60.408 57.143 0.00 0.00 34.45 4.94
1114 1159 6.936335 CGAACCCTAACTTTTCTAAACCCTAA 59.064 38.462 0.00 0.00 0.00 2.69
1116 1161 9.305555 GAACCCTAACTTTTCTAAACCCTAATT 57.694 33.333 0.00 0.00 0.00 1.40
1117 1162 8.874744 ACCCTAACTTTTCTAAACCCTAATTC 57.125 34.615 0.00 0.00 0.00 2.17
1118 1163 7.892241 ACCCTAACTTTTCTAAACCCTAATTCC 59.108 37.037 0.00 0.00 0.00 3.01
1119 1164 7.891712 CCCTAACTTTTCTAAACCCTAATTCCA 59.108 37.037 0.00 0.00 0.00 3.53
1120 1165 8.957466 CCTAACTTTTCTAAACCCTAATTCCAG 58.043 37.037 0.00 0.00 0.00 3.86
1121 1166 6.835819 ACTTTTCTAAACCCTAATTCCAGC 57.164 37.500 0.00 0.00 0.00 4.85
1122 1167 5.715279 ACTTTTCTAAACCCTAATTCCAGCC 59.285 40.000 0.00 0.00 0.00 4.85
1123 1168 5.530176 TTTCTAAACCCTAATTCCAGCCT 57.470 39.130 0.00 0.00 0.00 4.58
1124 1169 4.503714 TCTAAACCCTAATTCCAGCCTG 57.496 45.455 0.00 0.00 0.00 4.85
1125 1170 3.850173 TCTAAACCCTAATTCCAGCCTGT 59.150 43.478 0.00 0.00 0.00 4.00
1131 1176 2.487986 CCTAATTCCAGCCTGTCATCCC 60.488 54.545 0.00 0.00 0.00 3.85
1135 1180 1.225704 CCAGCCTGTCATCCCCTTC 59.774 63.158 0.00 0.00 0.00 3.46
1148 1193 1.139095 CCCTTCGCGACACTCTACC 59.861 63.158 9.15 0.00 0.00 3.18
1150 1195 1.868251 CTTCGCGACACTCTACCGC 60.868 63.158 9.15 0.00 44.81 5.68
1166 1212 2.653702 GCTCTCCCGATGGATCCG 59.346 66.667 7.39 0.00 40.80 4.18
1371 1417 3.454375 TCTCTCGTTCGTTTTCTTGCTT 58.546 40.909 0.00 0.00 0.00 3.91
1374 1420 1.668751 TCGTTCGTTTTCTTGCTTGCT 59.331 42.857 0.00 0.00 0.00 3.91
1375 1421 1.775208 CGTTCGTTTTCTTGCTTGCTG 59.225 47.619 0.00 0.00 0.00 4.41
1376 1422 2.119457 GTTCGTTTTCTTGCTTGCTGG 58.881 47.619 0.00 0.00 0.00 4.85
1377 1423 0.030638 TCGTTTTCTTGCTTGCTGGC 59.969 50.000 0.00 0.00 0.00 4.85
1378 1424 1.270777 CGTTTTCTTGCTTGCTGGCG 61.271 55.000 0.00 0.00 34.52 5.69
1396 1442 1.734377 GCGGTTTATTTTTCGCCCAGG 60.734 52.381 0.00 0.00 42.02 4.45
1427 1473 2.910482 CCTTGCGTTGATTCGATTTGTG 59.090 45.455 0.00 0.00 0.00 3.33
1446 1492 0.033504 GGACCACGAAGAGAAGCACA 59.966 55.000 0.00 0.00 0.00 4.57
1467 1564 5.113383 ACAGTGTTGTGATTTCTCGTACAA 58.887 37.500 0.00 0.00 35.83 2.41
1468 1565 5.234329 ACAGTGTTGTGATTTCTCGTACAAG 59.766 40.000 0.00 0.00 35.83 3.16
1472 1569 7.493320 AGTGTTGTGATTTCTCGTACAAGTAAA 59.507 33.333 0.00 0.00 34.11 2.01
1484 1581 5.648960 TCGTACAAGTAAATTGATTTCCCCC 59.351 40.000 0.00 0.00 41.83 5.40
1486 1583 6.152154 CGTACAAGTAAATTGATTTCCCCCTT 59.848 38.462 0.00 0.00 41.83 3.95
1487 1584 6.605471 ACAAGTAAATTGATTTCCCCCTTC 57.395 37.500 0.00 0.00 41.83 3.46
1488 1585 6.081356 ACAAGTAAATTGATTTCCCCCTTCA 58.919 36.000 0.00 0.00 41.83 3.02
1489 1586 6.730507 ACAAGTAAATTGATTTCCCCCTTCAT 59.269 34.615 0.00 0.00 41.83 2.57
1490 1587 7.093333 ACAAGTAAATTGATTTCCCCCTTCATC 60.093 37.037 0.00 0.00 41.83 2.92
1491 1588 6.502138 AGTAAATTGATTTCCCCCTTCATCA 58.498 36.000 0.00 0.00 0.00 3.07
1493 1590 8.288812 AGTAAATTGATTTCCCCCTTCATCATA 58.711 33.333 0.00 0.00 0.00 2.15
1495 1592 5.732331 TTGATTTCCCCCTTCATCATACT 57.268 39.130 0.00 0.00 0.00 2.12
1496 1593 5.310409 TGATTTCCCCCTTCATCATACTC 57.690 43.478 0.00 0.00 0.00 2.59
1504 1601 4.752101 CCCCTTCATCATACTCAAACGATC 59.248 45.833 0.00 0.00 0.00 3.69
1521 1618 2.866156 CGATCATGTGTATGCGTTCCTT 59.134 45.455 0.00 0.00 34.21 3.36
1631 1728 0.253044 GCAGGAGTATGGCCACTTCA 59.747 55.000 8.16 0.00 0.00 3.02
1632 1729 1.745141 GCAGGAGTATGGCCACTTCAG 60.745 57.143 8.16 0.00 0.00 3.02
1640 1737 6.067217 AGTATGGCCACTTCAGTTTATTCT 57.933 37.500 8.16 0.00 0.00 2.40
1641 1738 6.485171 AGTATGGCCACTTCAGTTTATTCTT 58.515 36.000 8.16 0.00 0.00 2.52
1644 1741 4.215399 TGGCCACTTCAGTTTATTCTTTCG 59.785 41.667 0.00 0.00 0.00 3.46
1648 1745 6.092807 GCCACTTCAGTTTATTCTTTCGATCT 59.907 38.462 0.00 0.00 0.00 2.75
1681 1788 5.133707 TCTTGTCGCGGTTTAATATTTCG 57.866 39.130 6.13 0.00 0.00 3.46
1687 1794 4.153835 TCGCGGTTTAATATTTCGTTTGGT 59.846 37.500 6.13 0.00 0.00 3.67
1688 1795 5.349817 TCGCGGTTTAATATTTCGTTTGGTA 59.650 36.000 6.13 0.00 0.00 3.25
1707 1814 4.339530 TGGTAATTGCTTTGTGTGCACTTA 59.660 37.500 19.41 3.78 40.40 2.24
1713 1820 3.882288 TGCTTTGTGTGCACTTATCTGAA 59.118 39.130 19.41 2.76 35.31 3.02
1766 4455 6.018098 GCTGTTGATATGTCCTTCTTGATCTG 60.018 42.308 0.00 0.00 0.00 2.90
1822 4511 6.735957 CCACTTCAAACAAACAAACAAAATCG 59.264 34.615 0.00 0.00 0.00 3.34
1916 4605 7.339466 AGAACAGTATTCACCATCAATAAACCC 59.661 37.037 0.00 0.00 0.00 4.11
2109 4800 3.567478 AGTTTCTGACTTGCTCAAGGT 57.433 42.857 13.48 0.52 42.53 3.50
2192 4883 3.026694 GGGAAAAGCTGCATAACTCCAT 58.973 45.455 1.02 0.00 0.00 3.41
2241 4932 5.008415 CCCAAAATTGCTTGCAAACACAATA 59.992 36.000 17.49 0.00 29.97 1.90
2243 4934 6.579292 CCAAAATTGCTTGCAAACACAATATG 59.421 34.615 17.49 17.50 29.97 1.78
2270 4961 9.327731 TGGGGTAAAATATATGGTTTGAAGTTT 57.672 29.630 0.00 0.00 0.00 2.66
2271 4962 9.594478 GGGGTAAAATATATGGTTTGAAGTTTG 57.406 33.333 0.00 0.00 0.00 2.93
2282 4973 5.654650 TGGTTTGAAGTTTGTGAGGTTATGT 59.345 36.000 0.00 0.00 0.00 2.29
2283 4974 5.977129 GGTTTGAAGTTTGTGAGGTTATGTG 59.023 40.000 0.00 0.00 0.00 3.21
2298 4989 6.700352 AGGTTATGTGGATTTTTCACCAATG 58.300 36.000 0.00 0.00 37.94 2.82
2300 4991 7.453126 AGGTTATGTGGATTTTTCACCAATGTA 59.547 33.333 0.00 0.00 37.94 2.29
2314 5005 6.539173 TCACCAATGTACAAGTGGTTATCTT 58.461 36.000 24.80 6.73 43.19 2.40
2317 5008 7.121168 CACCAATGTACAAGTGGTTATCTTGAT 59.879 37.037 24.80 4.99 43.19 2.57
2564 6158 5.602628 AGAAGTCTACACAACCTCTTGAAC 58.397 41.667 0.00 0.00 0.00 3.18
2599 6193 4.729595 CCGCTTACCACCATTAAGTTTTC 58.270 43.478 0.00 0.00 0.00 2.29
2604 6198 6.461788 GCTTACCACCATTAAGTTTTCAACCA 60.462 38.462 0.00 0.00 0.00 3.67
2607 6201 6.894682 ACCACCATTAAGTTTTCAACCAAAT 58.105 32.000 0.00 0.00 0.00 2.32
2616 6210 9.602568 TTAAGTTTTCAACCAAATTTTCTACCC 57.397 29.630 0.00 0.00 0.00 3.69
2647 6241 3.913089 GTGCAAACACAATTAAGAGGGG 58.087 45.455 0.00 0.00 46.61 4.79
2680 6274 1.737793 GTCCACATGGTTTTCTAGGCG 59.262 52.381 0.00 0.00 36.34 5.52
2688 6282 5.708230 ACATGGTTTTCTAGGCGTTTTCATA 59.292 36.000 0.00 0.00 0.00 2.15
2690 6284 6.249035 TGGTTTTCTAGGCGTTTTCATAAG 57.751 37.500 0.00 0.00 0.00 1.73
2738 6332 8.558973 AAGATTCTCAGAGACCAATTTACTTG 57.441 34.615 0.00 0.00 34.42 3.16
2753 6347 9.019764 CCAATTTACTTGTAACTTTGTCAACAG 57.980 33.333 11.25 0.00 32.61 3.16
2912 6506 8.211629 AGGTTCACAAGGAGGTATATTAATCAC 58.788 37.037 0.00 0.00 0.00 3.06
3072 6666 4.452455 ACATAGCCTCTTGAACGTTTTGAG 59.548 41.667 0.46 10.29 0.00 3.02
3076 6670 3.365364 GCCTCTTGAACGTTTTGAGATGG 60.365 47.826 20.21 16.68 0.00 3.51
3221 6815 8.570068 TTTCTGTTTGTAGAGGTACACTTTTT 57.430 30.769 0.00 0.00 38.95 1.94
3222 6816 7.781548 TCTGTTTGTAGAGGTACACTTTTTC 57.218 36.000 0.00 0.00 38.95 2.29
3223 6817 7.332557 TCTGTTTGTAGAGGTACACTTTTTCA 58.667 34.615 0.00 0.00 38.95 2.69
3224 6818 7.825270 TCTGTTTGTAGAGGTACACTTTTTCAA 59.175 33.333 0.00 0.00 38.95 2.69
3225 6819 8.338072 TGTTTGTAGAGGTACACTTTTTCAAA 57.662 30.769 0.00 0.00 38.95 2.69
3226 6820 8.455682 TGTTTGTAGAGGTACACTTTTTCAAAG 58.544 33.333 0.00 0.00 38.95 2.77
3227 6821 6.613755 TGTAGAGGTACACTTTTTCAAAGC 57.386 37.500 0.00 0.00 34.02 3.51
3228 6822 5.529800 TGTAGAGGTACACTTTTTCAAAGCC 59.470 40.000 0.00 0.00 34.02 4.35
3231 6825 5.598417 AGAGGTACACTTTTTCAAAGCCAAT 59.402 36.000 0.00 0.00 0.00 3.16
3266 7124 4.363138 CCTTTTTCTGTCTTCAAAGCCAC 58.637 43.478 0.00 0.00 0.00 5.01
3275 7133 7.168219 TCTGTCTTCAAAGCCACTAATATTGT 58.832 34.615 0.00 0.00 0.00 2.71
3385 8152 4.726317 TGACATATCCCTTGGATCCTCAAA 59.274 41.667 14.23 0.00 42.11 2.69
3428 8195 9.720769 CACCTATTGATAATTAGGAATACGGTT 57.279 33.333 5.19 0.00 34.01 4.44
3430 8197 9.162764 CCTATTGATAATTAGGAATACGGTTGG 57.837 37.037 0.00 0.00 31.53 3.77
3438 8205 2.007608 GGAATACGGTTGGTCTTGCTC 58.992 52.381 0.00 0.00 0.00 4.26
3515 8282 2.356665 TTAGGTTCAAAGCAGGCACA 57.643 45.000 0.00 0.00 0.00 4.57
3533 8300 7.412853 CAGGCACATGATTGTCTATTTCTTAC 58.587 38.462 0.00 0.00 32.34 2.34
3534 8301 6.543831 AGGCACATGATTGTCTATTTCTTACC 59.456 38.462 0.00 0.00 32.34 2.85
3557 8331 7.039270 ACCTTTTGTTTTGACCATGAACTAAC 58.961 34.615 0.00 0.00 0.00 2.34
3713 8490 5.888105 GCTGTGTGCAATCTCTGATTAAAT 58.112 37.500 0.00 0.00 42.31 1.40
3714 8491 6.327934 GCTGTGTGCAATCTCTGATTAAATT 58.672 36.000 0.00 0.00 42.31 1.82
3788 8565 6.545666 AGAACAAACATCATTCACTGTTGGTA 59.454 34.615 0.00 0.00 38.31 3.25
3789 8566 6.317789 ACAAACATCATTCACTGTTGGTAG 57.682 37.500 0.00 0.00 37.67 3.18
3933 8710 8.928733 GTTGTAACCGTATTGAGATTTTAGACA 58.071 33.333 0.00 0.00 0.00 3.41
3958 8735 4.914983 TGAGAATCCAGATTATGCATCCC 58.085 43.478 0.19 0.00 31.20 3.85
3959 8736 4.351704 TGAGAATCCAGATTATGCATCCCA 59.648 41.667 0.19 0.00 31.20 4.37
4028 8805 1.008538 GCTCTGTTGGTTGGTTGCG 60.009 57.895 0.00 0.00 0.00 4.85
4076 8853 8.906867 CCTGAATTGCTATTTCCTTAATTCTCA 58.093 33.333 0.00 0.00 38.14 3.27
4081 8858 7.807977 TGCTATTTCCTTAATTCTCATGACC 57.192 36.000 0.00 0.00 0.00 4.02
4098 8875 5.827797 TCATGACCTGTTCTTTAGTTTTGCT 59.172 36.000 0.00 0.00 0.00 3.91
4099 8876 6.995686 TCATGACCTGTTCTTTAGTTTTGCTA 59.004 34.615 0.00 0.00 0.00 3.49
4117 8894 8.902735 GTTTTGCTATAAACTGAGCTTTGTAAC 58.097 33.333 0.00 0.00 39.54 2.50
4203 8994 7.872993 CACAGTAGGATACAATGTTATAGGTGG 59.127 40.741 0.00 0.00 46.26 4.61
4265 9064 4.770010 CCTACCTAGGCAAAATTTTGGTGA 59.230 41.667 27.60 8.77 38.57 4.02
4419 9225 0.032130 TCACTCGCTTCCTGTGACAC 59.968 55.000 0.00 0.00 36.03 3.67
4420 9226 0.249447 CACTCGCTTCCTGTGACACA 60.249 55.000 8.26 8.26 33.95 3.72
4427 9233 2.289002 GCTTCCTGTGACACAGTGAAAG 59.711 50.000 29.09 26.33 44.50 2.62
4432 9238 6.114187 TCCTGTGACACAGTGAAAGATAAT 57.886 37.500 29.09 0.00 44.50 1.28
4436 9242 7.490725 CCTGTGACACAGTGAAAGATAATAGAG 59.509 40.741 29.09 8.49 44.50 2.43
4438 9244 8.029522 TGTGACACAGTGAAAGATAATAGAGAC 58.970 37.037 7.81 0.00 0.00 3.36
4462 9270 8.532977 ACGCTTTGCAAAGAAACATATTTATT 57.467 26.923 37.14 6.85 38.28 1.40
4511 9320 4.933400 TCAAAAAGACTGAAGGCCGTATAC 59.067 41.667 0.00 0.00 0.00 1.47
4512 9321 4.546829 AAAAGACTGAAGGCCGTATACA 57.453 40.909 3.32 0.00 0.00 2.29
4513 9322 4.546829 AAAGACTGAAGGCCGTATACAA 57.453 40.909 3.32 0.00 0.00 2.41
4515 9324 3.097614 AGACTGAAGGCCGTATACAAGT 58.902 45.455 3.32 0.00 0.00 3.16
4516 9325 4.275810 AGACTGAAGGCCGTATACAAGTA 58.724 43.478 3.32 0.00 0.00 2.24
4517 9326 4.097589 AGACTGAAGGCCGTATACAAGTAC 59.902 45.833 3.32 0.00 0.00 2.73
4519 9328 4.221262 ACTGAAGGCCGTATACAAGTACAA 59.779 41.667 3.32 0.00 0.00 2.41
4520 9329 5.149973 TGAAGGCCGTATACAAGTACAAA 57.850 39.130 3.32 0.00 0.00 2.83
4521 9330 4.931002 TGAAGGCCGTATACAAGTACAAAC 59.069 41.667 3.32 0.00 0.00 2.93
4522 9331 4.540359 AGGCCGTATACAAGTACAAACA 57.460 40.909 3.32 0.00 0.00 2.83
4523 9332 4.248058 AGGCCGTATACAAGTACAAACAC 58.752 43.478 3.32 0.00 0.00 3.32
4524 9333 3.371898 GGCCGTATACAAGTACAAACACC 59.628 47.826 3.32 0.00 0.00 4.16
4525 9334 3.371898 GCCGTATACAAGTACAAACACCC 59.628 47.826 3.32 0.00 0.00 4.61
4526 9335 3.934579 CCGTATACAAGTACAAACACCCC 59.065 47.826 3.32 0.00 0.00 4.95
4528 9337 4.322953 CGTATACAAGTACAAACACCCCCT 60.323 45.833 3.32 0.00 0.00 4.79
4529 9338 4.734843 ATACAAGTACAAACACCCCCTT 57.265 40.909 0.00 0.00 0.00 3.95
4530 9339 2.661718 ACAAGTACAAACACCCCCTTG 58.338 47.619 0.00 0.00 36.32 3.61
4531 9340 2.024751 ACAAGTACAAACACCCCCTTGT 60.025 45.455 0.00 0.00 38.08 3.16
4533 9342 3.782656 AGTACAAACACCCCCTTGTAG 57.217 47.619 0.00 0.00 38.38 2.74
4576 9683 2.341846 TTGAGGTTGCCGAAGTCTTT 57.658 45.000 0.00 0.00 0.00 2.52
4578 9685 2.218603 TGAGGTTGCCGAAGTCTTTTC 58.781 47.619 0.00 0.00 0.00 2.29
4587 9694 2.028567 CCGAAGTCTTTTCTCTCCAGCT 60.029 50.000 0.00 0.00 0.00 4.24
4598 9705 1.672356 CTCCAGCTTCCACCAACGG 60.672 63.158 0.00 0.00 0.00 4.44
4623 9730 1.148310 CGCCAAGAAGTTGTCGATGT 58.852 50.000 0.00 0.00 37.20 3.06
4627 9734 4.184629 GCCAAGAAGTTGTCGATGTAGAT 58.815 43.478 0.00 0.00 30.95 1.98
4631 9738 6.035435 CCAAGAAGTTGTCGATGTAGATCAAG 59.965 42.308 0.29 0.00 30.95 3.02
4638 9745 2.032808 TCGATGTAGATCAAGAGACGCG 60.033 50.000 3.53 3.53 0.00 6.01
4654 9761 2.361610 CGGGTGGCCAAAGCAGAT 60.362 61.111 7.24 0.00 42.56 2.90
4655 9762 2.409870 CGGGTGGCCAAAGCAGATC 61.410 63.158 7.24 0.00 42.56 2.75
4656 9763 2.409870 GGGTGGCCAAAGCAGATCG 61.410 63.158 7.24 0.00 42.56 3.69
4657 9764 2.486966 GTGGCCAAAGCAGATCGC 59.513 61.111 7.24 1.92 42.56 4.58
4658 9765 2.751436 TGGCCAAAGCAGATCGCC 60.751 61.111 0.61 2.71 44.04 5.54
4659 9766 2.751436 GGCCAAAGCAGATCGCCA 60.751 61.111 0.00 0.00 44.04 5.69
4660 9767 2.486966 GCCAAAGCAGATCGCCAC 59.513 61.111 6.02 0.00 44.04 5.01
4661 9768 3.056313 GCCAAAGCAGATCGCCACC 62.056 63.158 6.02 0.00 44.04 4.61
4662 9769 2.409870 CCAAAGCAGATCGCCACCC 61.410 63.158 6.02 0.00 44.04 4.61
4663 9770 2.044946 AAAGCAGATCGCCACCCC 60.045 61.111 6.02 0.00 44.04 4.95
4664 9771 3.645268 AAAGCAGATCGCCACCCCC 62.645 63.158 6.02 0.00 44.04 5.40
4668 9775 2.838225 AGATCGCCACCCCCGTAG 60.838 66.667 0.00 0.00 0.00 3.51
4685 9800 5.464389 CCCCGTAGAAAATACGTCAATAAGG 59.536 44.000 0.00 0.00 39.09 2.69
4692 9807 5.499139 AAATACGTCAATAAGGGCATGTG 57.501 39.130 0.00 0.00 0.00 3.21
4695 9810 2.290641 ACGTCAATAAGGGCATGTGGAA 60.291 45.455 0.00 0.00 0.00 3.53
4755 9870 3.955471 TCCAGATGGATCCACTGAAAAC 58.045 45.455 30.30 13.86 39.78 2.43
4761 9876 6.604795 CAGATGGATCCACTGAAAACCTAAAT 59.395 38.462 27.15 6.48 34.07 1.40
4772 9887 6.816640 ACTGAAAACCTAAATCGATCGAATCA 59.183 34.615 23.50 12.99 0.00 2.57
4791 9906 0.670162 ACGAAAGACCCGTCGAAGAA 59.330 50.000 0.00 0.00 39.69 2.52
4801 9916 1.129326 CGTCGAAGAACTCCACACAC 58.871 55.000 0.00 0.00 39.69 3.82
4803 9918 1.068741 GTCGAAGAACTCCACACACCT 59.931 52.381 0.00 0.00 39.69 4.00
4846 9979 4.393990 CCAACGAAACAGGTTATTCCTACC 59.606 45.833 0.00 0.00 46.24 3.18
4856 9989 6.624021 ACAGGTTATTCCTACCCTTGGATAAT 59.376 38.462 0.00 0.00 46.24 1.28
4859 9992 3.876309 TTCCTACCCTTGGATAATGCC 57.124 47.619 0.00 0.00 33.09 4.40
4867 10000 2.571212 CTTGGATAATGCCGCCACTTA 58.429 47.619 0.00 0.00 0.00 2.24
4869 10002 1.488812 TGGATAATGCCGCCACTTAGT 59.511 47.619 0.00 0.00 0.00 2.24
4943 10076 0.992072 CTCATGCCGTTGTACGACTG 59.008 55.000 11.49 6.01 46.05 3.51
4949 10082 2.084681 CGTTGTACGACTGGTCCGC 61.085 63.158 11.49 0.00 46.05 5.54
4951 10084 0.731855 GTTGTACGACTGGTCCGCTC 60.732 60.000 5.96 0.00 0.00 5.03
4961 10094 1.226717 GGTCCGCTCTGATGTCGAC 60.227 63.158 9.11 9.11 0.00 4.20
4962 10095 1.226717 GTCCGCTCTGATGTCGACC 60.227 63.158 14.12 0.00 0.00 4.79
4963 10096 1.378646 TCCGCTCTGATGTCGACCT 60.379 57.895 14.12 2.19 0.00 3.85
4964 10097 1.064946 CCGCTCTGATGTCGACCTC 59.935 63.158 14.12 13.65 0.00 3.85
4965 10098 1.297967 CGCTCTGATGTCGACCTCG 60.298 63.158 14.12 9.34 41.45 4.63
4966 10099 1.587613 GCTCTGATGTCGACCTCGC 60.588 63.158 14.12 8.16 39.60 5.03
4967 10100 1.999071 GCTCTGATGTCGACCTCGCT 61.999 60.000 14.12 0.00 39.60 4.93
4968 10101 0.248417 CTCTGATGTCGACCTCGCTG 60.248 60.000 14.12 7.42 39.60 5.18
4969 10102 1.875813 CTGATGTCGACCTCGCTGC 60.876 63.158 14.12 0.00 39.60 5.25
4970 10103 2.276863 CTGATGTCGACCTCGCTGCT 62.277 60.000 14.12 0.00 39.60 4.24
4971 10104 1.875813 GATGTCGACCTCGCTGCTG 60.876 63.158 14.12 0.00 39.60 4.41
4972 10105 2.549611 GATGTCGACCTCGCTGCTGT 62.550 60.000 14.12 0.00 39.60 4.40
4973 10106 2.049063 GTCGACCTCGCTGCTGTT 60.049 61.111 3.51 0.00 39.60 3.16
4974 10107 2.089349 GTCGACCTCGCTGCTGTTC 61.089 63.158 3.51 0.00 39.60 3.18
4975 10108 2.049156 CGACCTCGCTGCTGTTCA 60.049 61.111 0.00 0.00 0.00 3.18
4976 10109 2.091112 CGACCTCGCTGCTGTTCAG 61.091 63.158 0.00 0.00 45.62 3.02
4977 10110 1.290324 GACCTCGCTGCTGTTCAGA 59.710 57.895 3.84 0.00 45.72 3.27
4978 10111 0.319900 GACCTCGCTGCTGTTCAGAA 60.320 55.000 3.84 0.00 45.72 3.02
4979 10112 0.601311 ACCTCGCTGCTGTTCAGAAC 60.601 55.000 6.32 6.32 45.72 3.01
4980 10113 1.294659 CCTCGCTGCTGTTCAGAACC 61.295 60.000 10.93 0.00 45.72 3.62
4981 10114 0.601046 CTCGCTGCTGTTCAGAACCA 60.601 55.000 10.93 1.73 45.72 3.67
4982 10115 0.035317 TCGCTGCTGTTCAGAACCAT 59.965 50.000 10.93 0.00 45.72 3.55
4983 10116 0.167470 CGCTGCTGTTCAGAACCATG 59.833 55.000 10.93 2.70 45.72 3.66
4984 10117 0.109412 GCTGCTGTTCAGAACCATGC 60.109 55.000 10.93 12.23 45.72 4.06
4985 10118 1.241165 CTGCTGTTCAGAACCATGCA 58.759 50.000 18.51 18.51 45.72 3.96
4986 10119 0.953727 TGCTGTTCAGAACCATGCAC 59.046 50.000 16.74 1.33 0.00 4.57
4987 10120 1.242076 GCTGTTCAGAACCATGCACT 58.758 50.000 10.93 0.00 0.00 4.40
4988 10121 1.068748 GCTGTTCAGAACCATGCACTG 60.069 52.381 10.93 0.00 0.00 3.66
4989 10122 2.497138 CTGTTCAGAACCATGCACTGA 58.503 47.619 10.93 9.51 38.61 3.41
4990 10123 3.079578 CTGTTCAGAACCATGCACTGAT 58.920 45.455 10.93 0.00 39.78 2.90
4991 10124 2.815503 TGTTCAGAACCATGCACTGATG 59.184 45.455 10.93 0.00 39.78 3.07
5001 10134 3.077617 GCACTGATGCCCTCTTCTC 57.922 57.895 0.00 0.00 46.97 2.87
5002 10135 0.540923 GCACTGATGCCCTCTTCTCT 59.459 55.000 0.00 0.00 46.97 3.10
5003 10136 1.743091 GCACTGATGCCCTCTTCTCTG 60.743 57.143 0.00 0.00 46.97 3.35
5004 10137 1.829849 CACTGATGCCCTCTTCTCTGA 59.170 52.381 0.00 0.00 0.00 3.27
5005 10138 2.435069 CACTGATGCCCTCTTCTCTGAT 59.565 50.000 0.00 0.00 0.00 2.90
5006 10139 3.640498 CACTGATGCCCTCTTCTCTGATA 59.360 47.826 0.00 0.00 0.00 2.15
5007 10140 4.100653 CACTGATGCCCTCTTCTCTGATAA 59.899 45.833 0.00 0.00 0.00 1.75
5008 10141 4.906664 ACTGATGCCCTCTTCTCTGATAAT 59.093 41.667 0.00 0.00 0.00 1.28
5009 10142 5.011943 ACTGATGCCCTCTTCTCTGATAATC 59.988 44.000 0.00 0.00 0.00 1.75
5010 10143 4.285517 TGATGCCCTCTTCTCTGATAATCC 59.714 45.833 0.00 0.00 0.00 3.01
5011 10144 2.630098 TGCCCTCTTCTCTGATAATCCG 59.370 50.000 0.00 0.00 0.00 4.18
5012 10145 2.028567 GCCCTCTTCTCTGATAATCCGG 60.029 54.545 0.00 0.00 0.00 5.14
5013 10146 2.028567 CCCTCTTCTCTGATAATCCGGC 60.029 54.545 0.00 0.00 0.00 6.13
5014 10147 2.028567 CCTCTTCTCTGATAATCCGGCC 60.029 54.545 0.00 0.00 0.00 6.13
5015 10148 2.630098 CTCTTCTCTGATAATCCGGCCA 59.370 50.000 2.24 0.00 0.00 5.36
5016 10149 2.630098 TCTTCTCTGATAATCCGGCCAG 59.370 50.000 2.24 0.00 0.00 4.85
5017 10150 1.342074 TCTCTGATAATCCGGCCAGG 58.658 55.000 2.24 5.27 42.97 4.45
5018 10151 1.051812 CTCTGATAATCCGGCCAGGT 58.948 55.000 2.24 0.00 41.99 4.00
5019 10152 1.417890 CTCTGATAATCCGGCCAGGTT 59.582 52.381 2.24 0.00 41.99 3.50
5020 10153 1.140852 TCTGATAATCCGGCCAGGTTG 59.859 52.381 2.24 0.00 41.99 3.77
5021 10154 1.140852 CTGATAATCCGGCCAGGTTGA 59.859 52.381 2.24 0.00 41.99 3.18
5022 10155 1.140852 TGATAATCCGGCCAGGTTGAG 59.859 52.381 2.24 0.00 41.99 3.02
5023 10156 0.179018 ATAATCCGGCCAGGTTGAGC 60.179 55.000 2.24 0.00 41.99 4.26
5024 10157 2.265467 TAATCCGGCCAGGTTGAGCC 62.265 60.000 2.24 0.00 46.17 4.70
5029 10162 4.329545 GCCAGGTTGAGCCACCGA 62.330 66.667 0.00 0.00 42.33 4.69
5030 10163 2.671070 CCAGGTTGAGCCACCGAT 59.329 61.111 0.00 0.00 42.33 4.18
5031 10164 1.746615 CCAGGTTGAGCCACCGATG 60.747 63.158 0.00 0.00 42.33 3.84
5032 10165 1.296392 CAGGTTGAGCCACCGATGA 59.704 57.895 0.00 0.00 42.33 2.92
5033 10166 0.321564 CAGGTTGAGCCACCGATGAA 60.322 55.000 0.00 0.00 42.33 2.57
5034 10167 0.036010 AGGTTGAGCCACCGATGAAG 60.036 55.000 0.00 0.00 42.33 3.02
5035 10168 0.036388 GGTTGAGCCACCGATGAAGA 60.036 55.000 0.00 0.00 37.17 2.87
5036 10169 1.407437 GGTTGAGCCACCGATGAAGAT 60.407 52.381 0.00 0.00 37.17 2.40
5037 10170 1.936547 GTTGAGCCACCGATGAAGATC 59.063 52.381 0.00 0.00 0.00 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 1.068895 TGGACGCACGGTTAAAGAGAA 59.931 47.619 0.00 0.00 0.00 2.87
15 16 1.717194 GAGATTTGGACGCACGGTTA 58.283 50.000 0.00 0.00 0.00 2.85
131 135 2.253154 GGTTCGGTTTTTCGCCCG 59.747 61.111 0.00 0.00 45.55 6.13
134 138 2.178892 CTCCCGGTTCGGTTTTTCGC 62.179 60.000 0.00 0.00 46.80 4.70
135 139 1.864176 CTCCCGGTTCGGTTTTTCG 59.136 57.895 0.00 0.00 46.80 3.46
136 140 1.167781 TGCTCCCGGTTCGGTTTTTC 61.168 55.000 0.00 0.00 46.80 2.29
191 196 1.710013 GGTTGTGATTTCGCGAGAGA 58.290 50.000 9.59 0.00 43.69 3.10
279 284 1.153628 CGTGCCTCTAGGAAACGGG 60.154 63.158 13.82 0.00 40.70 5.28
307 314 2.174969 ACGGTTGTGCTTTCGCGAA 61.175 52.632 19.38 19.38 39.65 4.70
339 346 1.213094 CGCGAGAGTCACGGTTTTGT 61.213 55.000 11.95 0.00 0.00 2.83
390 399 1.907739 CCATGCCTCTCGGAAAGGA 59.092 57.895 0.36 0.00 35.83 3.36
406 415 0.249531 TTACGCGAAAGTCACAGCCA 60.250 50.000 15.93 0.00 0.00 4.75
544 555 3.951332 CTTCCGCAAGAAGCACGA 58.049 55.556 0.88 0.00 45.38 4.35
563 575 0.662374 TTTCGCGAGAGTCACGGTTC 60.662 55.000 9.59 0.00 43.69 3.62
665 680 2.288273 CGGAAGTCACGGTTCTTCTTCT 60.288 50.000 16.81 0.00 39.67 2.85
672 687 1.216941 TTTCGCGGAAGTCACGGTTC 61.217 55.000 6.13 0.00 0.00 3.62
774 799 2.853594 GGGTTTTCGACGTTTTGGTTTC 59.146 45.455 0.00 0.00 0.00 2.78
884 928 1.884926 GGCGCGCTCTCAGCTATTT 60.885 57.895 32.29 0.00 39.60 1.40
962 1007 6.594788 AATCCAAAGAAGAAGCATGCTTTA 57.405 33.333 32.36 11.05 30.46 1.85
965 1010 4.322499 CCAAATCCAAAGAAGAAGCATGCT 60.322 41.667 16.30 16.30 0.00 3.79
966 1011 3.930848 CCAAATCCAAAGAAGAAGCATGC 59.069 43.478 10.51 10.51 0.00 4.06
967 1012 5.395682 TCCAAATCCAAAGAAGAAGCATG 57.604 39.130 0.00 0.00 0.00 4.06
968 1013 5.105064 CCATCCAAATCCAAAGAAGAAGCAT 60.105 40.000 0.00 0.00 0.00 3.79
969 1014 4.221262 CCATCCAAATCCAAAGAAGAAGCA 59.779 41.667 0.00 0.00 0.00 3.91
970 1015 4.463891 TCCATCCAAATCCAAAGAAGAAGC 59.536 41.667 0.00 0.00 0.00 3.86
971 1016 5.105595 GGTCCATCCAAATCCAAAGAAGAAG 60.106 44.000 0.00 0.00 35.97 2.85
972 1017 4.772100 GGTCCATCCAAATCCAAAGAAGAA 59.228 41.667 0.00 0.00 35.97 2.52
973 1018 4.202663 TGGTCCATCCAAATCCAAAGAAGA 60.203 41.667 0.00 0.00 44.12 2.87
974 1019 4.088634 TGGTCCATCCAAATCCAAAGAAG 58.911 43.478 0.00 0.00 44.12 2.85
975 1020 4.125124 TGGTCCATCCAAATCCAAAGAA 57.875 40.909 0.00 0.00 44.12 2.52
976 1021 3.824001 TGGTCCATCCAAATCCAAAGA 57.176 42.857 0.00 0.00 44.12 2.52
986 1031 1.619654 CAACTTGCTTGGTCCATCCA 58.380 50.000 0.00 0.00 45.60 3.41
987 1032 0.244721 GCAACTTGCTTGGTCCATCC 59.755 55.000 6.50 0.00 40.96 3.51
988 1033 3.800628 GCAACTTGCTTGGTCCATC 57.199 52.632 6.50 0.00 40.96 3.51
1026 1071 1.156736 CTTAACGGGCTGGTCACTTG 58.843 55.000 0.00 0.00 0.00 3.16
1080 1125 0.896226 GTTAGGGTTCGTGAGGAGCT 59.104 55.000 0.00 0.00 37.25 4.09
1083 1128 3.644738 AGAAAAGTTAGGGTTCGTGAGGA 59.355 43.478 0.00 0.00 0.00 3.71
1114 1159 0.625683 AGGGGATGACAGGCTGGAAT 60.626 55.000 20.34 11.64 0.00 3.01
1116 1161 1.229951 AAGGGGATGACAGGCTGGA 60.230 57.895 20.34 5.09 0.00 3.86
1117 1162 1.225704 GAAGGGGATGACAGGCTGG 59.774 63.158 20.34 0.58 0.00 4.85
1118 1163 1.153289 CGAAGGGGATGACAGGCTG 60.153 63.158 14.16 14.16 0.00 4.85
1119 1164 3.036429 GCGAAGGGGATGACAGGCT 62.036 63.158 0.00 0.00 0.00 4.58
1120 1165 2.514824 GCGAAGGGGATGACAGGC 60.515 66.667 0.00 0.00 0.00 4.85
1121 1166 2.202932 CGCGAAGGGGATGACAGG 60.203 66.667 0.00 0.00 36.55 4.00
1122 1167 1.519455 GTCGCGAAGGGGATGACAG 60.519 63.158 12.06 0.00 42.39 3.51
1123 1168 2.279810 TGTCGCGAAGGGGATGACA 61.280 57.895 12.06 0.00 42.39 3.58
1124 1169 1.810030 GTGTCGCGAAGGGGATGAC 60.810 63.158 12.06 0.00 42.39 3.06
1125 1170 1.945354 GAGTGTCGCGAAGGGGATGA 61.945 60.000 12.06 0.00 42.39 2.92
1131 1176 1.226323 CGGTAGAGTGTCGCGAAGG 60.226 63.158 12.06 0.00 0.00 3.46
1348 1394 2.155924 GCAAGAAAACGAACGAGAGAGG 59.844 50.000 0.14 0.00 0.00 3.69
1356 1402 2.119457 CCAGCAAGCAAGAAAACGAAC 58.881 47.619 0.00 0.00 0.00 3.95
1357 1403 1.535860 GCCAGCAAGCAAGAAAACGAA 60.536 47.619 0.00 0.00 0.00 3.85
1371 1417 1.667467 GCGAAAAATAAACCGCCAGCA 60.667 47.619 0.00 0.00 41.59 4.41
1376 1422 1.624487 CTGGGCGAAAAATAAACCGC 58.376 50.000 0.00 0.00 46.04 5.68
1377 1423 1.542472 ACCTGGGCGAAAAATAAACCG 59.458 47.619 0.00 0.00 0.00 4.44
1378 1424 2.297880 ACACCTGGGCGAAAAATAAACC 59.702 45.455 0.00 0.00 0.00 3.27
1427 1473 0.033504 TGTGCTTCTCTTCGTGGTCC 59.966 55.000 0.00 0.00 0.00 4.46
1446 1492 5.357257 ACTTGTACGAGAAATCACAACACT 58.643 37.500 17.37 0.00 0.00 3.55
1465 1562 6.603940 TGAAGGGGGAAATCAATTTACTTG 57.396 37.500 0.00 0.00 36.09 3.16
1467 1564 6.502138 TGATGAAGGGGGAAATCAATTTACT 58.498 36.000 0.00 0.00 31.23 2.24
1468 1565 6.790232 TGATGAAGGGGGAAATCAATTTAC 57.210 37.500 0.00 0.00 0.00 2.01
1472 1569 6.126097 TGAGTATGATGAAGGGGGAAATCAAT 60.126 38.462 0.00 0.00 33.06 2.57
1484 1581 7.010830 ACACATGATCGTTTGAGTATGATGAAG 59.989 37.037 8.06 0.00 0.00 3.02
1486 1583 6.340522 ACACATGATCGTTTGAGTATGATGA 58.659 36.000 8.06 0.00 0.00 2.92
1487 1584 6.594284 ACACATGATCGTTTGAGTATGATG 57.406 37.500 8.06 0.00 0.00 3.07
1488 1585 7.095481 GCATACACATGATCGTTTGAGTATGAT 60.095 37.037 26.30 4.90 43.81 2.45
1489 1586 6.200854 GCATACACATGATCGTTTGAGTATGA 59.799 38.462 26.30 5.27 43.81 2.15
1490 1587 6.357980 GCATACACATGATCGTTTGAGTATG 58.642 40.000 22.16 22.16 43.87 2.39
1491 1588 5.175673 CGCATACACATGATCGTTTGAGTAT 59.824 40.000 8.06 7.49 33.67 2.12
1493 1590 3.306973 CGCATACACATGATCGTTTGAGT 59.693 43.478 8.06 3.75 33.67 3.41
1495 1592 3.258228 ACGCATACACATGATCGTTTGA 58.742 40.909 8.06 0.00 33.67 2.69
1496 1593 3.656651 ACGCATACACATGATCGTTTG 57.343 42.857 0.00 0.00 33.67 2.93
1504 1601 3.261580 TCTGAAGGAACGCATACACATG 58.738 45.455 0.00 0.00 35.07 3.21
1521 1618 0.897621 TTCTCAGCTCCGCAATCTGA 59.102 50.000 0.00 0.00 35.74 3.27
1641 1738 9.485591 GCGACAAGAAAAATTAAATAGATCGAA 57.514 29.630 0.00 0.00 0.00 3.71
1644 1741 7.908601 ACCGCGACAAGAAAAATTAAATAGATC 59.091 33.333 8.23 0.00 0.00 2.75
1648 1745 9.674824 TTAAACCGCGACAAGAAAAATTAAATA 57.325 25.926 8.23 0.00 0.00 1.40
1652 1749 9.843334 AATATTAAACCGCGACAAGAAAAATTA 57.157 25.926 8.23 0.00 0.00 1.40
1653 1750 8.751302 AATATTAAACCGCGACAAGAAAAATT 57.249 26.923 8.23 0.00 0.00 1.82
1654 1751 8.751302 AAATATTAAACCGCGACAAGAAAAAT 57.249 26.923 8.23 0.00 0.00 1.82
1655 1752 7.059716 CGAAATATTAAACCGCGACAAGAAAAA 59.940 33.333 8.23 0.00 0.00 1.94
1661 1768 4.925061 ACGAAATATTAAACCGCGACAA 57.075 36.364 8.23 0.00 0.00 3.18
1681 1788 3.868077 TGCACACAAAGCAATTACCAAAC 59.132 39.130 0.00 0.00 39.39 2.93
1713 1820 7.660030 AGGCACAAGCAATTTATAACCTATT 57.340 32.000 0.00 0.00 44.61 1.73
1801 4490 8.979574 AGTAACGATTTTGTTTGTTTGTTTGAA 58.020 25.926 0.00 0.00 33.32 2.69
1822 4511 9.099820 GTTTTCTAAACGTAATTGCAGAGTAAC 57.900 33.333 0.00 0.00 0.00 2.50
1916 4605 2.076863 GGAGGATTGTGAACACTTCCG 58.923 52.381 15.83 0.00 38.49 4.30
2154 4845 3.439857 TCCCCAAGATTCAAGAGGTTG 57.560 47.619 0.00 0.00 34.67 3.77
2241 4932 8.846423 TTCAAACCATATATTTTACCCCACAT 57.154 30.769 0.00 0.00 0.00 3.21
2243 4934 8.301252 ACTTCAAACCATATATTTTACCCCAC 57.699 34.615 0.00 0.00 0.00 4.61
2270 4961 5.242838 GGTGAAAAATCCACATAACCTCACA 59.757 40.000 0.00 0.00 36.31 3.58
2271 4962 5.242838 TGGTGAAAAATCCACATAACCTCAC 59.757 40.000 0.00 0.00 36.31 3.51
2282 4973 6.462207 CCACTTGTACATTGGTGAAAAATCCA 60.462 38.462 19.08 0.00 32.12 3.41
2283 4974 5.925969 CCACTTGTACATTGGTGAAAAATCC 59.074 40.000 19.08 0.00 32.12 3.01
2332 5023 8.331931 AGTACCTTCAATGATATAGGTTCCAA 57.668 34.615 10.05 0.00 41.16 3.53
2564 6158 2.289506 GGTAAGCGGCTATTCCCTAAGG 60.290 54.545 1.35 0.00 0.00 2.69
2599 6193 4.346709 ACCTTGGGGTAGAAAATTTGGTTG 59.653 41.667 0.00 0.00 45.32 3.77
2604 6198 4.897076 ACGAAACCTTGGGGTAGAAAATTT 59.103 37.500 0.00 0.00 46.67 1.82
2607 6201 3.215975 CACGAAACCTTGGGGTAGAAAA 58.784 45.455 0.00 0.00 46.67 2.29
2616 6210 1.555477 GTGTTTGCACGAAACCTTGG 58.445 50.000 0.00 0.00 43.04 3.61
2647 6241 4.119136 CCATGTGGACTTTGGTGAAAAAC 58.881 43.478 0.00 0.00 37.39 2.43
2662 6256 1.821216 ACGCCTAGAAAACCATGTGG 58.179 50.000 0.00 0.00 42.17 4.17
2701 6295 9.823647 GTCTCTGAGAATCTTCAACCATTTATA 57.176 33.333 9.31 0.00 34.92 0.98
2713 6307 8.160106 ACAAGTAAATTGGTCTCTGAGAATCTT 58.840 33.333 9.31 2.09 43.68 2.40
2723 6317 8.617809 TGACAAAGTTACAAGTAAATTGGTCTC 58.382 33.333 27.21 13.38 46.24 3.36
2724 6318 8.514330 TGACAAAGTTACAAGTAAATTGGTCT 57.486 30.769 27.21 6.39 46.24 3.85
2825 6419 6.862711 AAGAAAGGCACAGAAGTTAAGTAC 57.137 37.500 0.00 0.00 0.00 2.73
3076 6670 8.704234 TCCGTTAAAATTTTATTGTGTTCATGC 58.296 29.630 11.33 0.00 0.00 4.06
3221 6815 4.159506 GGGTAGCAACATTATTGGCTTTGA 59.840 41.667 0.00 0.00 37.79 2.69
3222 6816 4.432712 GGGTAGCAACATTATTGGCTTTG 58.567 43.478 0.00 0.00 37.79 2.77
3223 6817 3.450817 GGGGTAGCAACATTATTGGCTTT 59.549 43.478 0.00 0.00 37.79 3.51
3224 6818 3.031013 GGGGTAGCAACATTATTGGCTT 58.969 45.455 0.00 0.00 37.79 4.35
3225 6819 2.244769 AGGGGTAGCAACATTATTGGCT 59.755 45.455 0.00 0.00 40.26 4.75
3226 6820 2.666317 AGGGGTAGCAACATTATTGGC 58.334 47.619 0.00 0.00 0.00 4.52
3227 6821 5.675684 AAAAGGGGTAGCAACATTATTGG 57.324 39.130 0.00 0.00 0.00 3.16
3228 6822 6.813152 CAGAAAAAGGGGTAGCAACATTATTG 59.187 38.462 0.00 0.00 0.00 1.90
3231 6825 5.390387 ACAGAAAAAGGGGTAGCAACATTA 58.610 37.500 0.00 0.00 0.00 1.90
3307 7167 4.157105 GCTGACATGTACCCGGTTATTTTT 59.843 41.667 0.00 0.00 0.00 1.94
3428 8195 2.575532 CTCACAAAAGGAGCAAGACCA 58.424 47.619 0.00 0.00 0.00 4.02
3430 8197 1.268079 GCCTCACAAAAGGAGCAAGAC 59.732 52.381 0.00 0.00 38.87 3.01
3438 8205 2.859165 TCAGTAGGCCTCACAAAAGG 57.141 50.000 9.68 0.00 39.62 3.11
3481 8248 6.004408 TGAACCTAAAACCAACTAATTCGC 57.996 37.500 0.00 0.00 0.00 4.70
3533 8300 7.038659 TGTTAGTTCATGGTCAAAACAAAAGG 58.961 34.615 0.00 0.00 0.00 3.11
3534 8301 8.472683 TTGTTAGTTCATGGTCAAAACAAAAG 57.527 30.769 10.01 0.00 33.73 2.27
3571 8345 3.573598 CATAACAACCATGCGAGCAAAA 58.426 40.909 0.57 0.00 0.00 2.44
3572 8346 2.094803 CCATAACAACCATGCGAGCAAA 60.095 45.455 0.57 0.00 0.00 3.68
3579 8353 4.782019 TTCTCAACCATAACAACCATGC 57.218 40.909 0.00 0.00 0.00 4.06
3713 8490 4.500265 GCCCAAGCAAGGAGACAA 57.500 55.556 0.00 0.00 39.53 3.18
3788 8565 0.107508 CCACATCAATCGAGGCACCT 60.108 55.000 0.00 0.00 0.00 4.00
3789 8566 0.107703 TCCACATCAATCGAGGCACC 60.108 55.000 0.00 0.00 0.00 5.01
3933 8710 6.436532 GGGATGCATAATCTGGATTCTCAAAT 59.563 38.462 0.00 0.00 35.83 2.32
3958 8735 4.386652 CCATTTTTCGACATCCAGCTTTTG 59.613 41.667 0.00 0.00 0.00 2.44
3959 8736 4.039124 ACCATTTTTCGACATCCAGCTTTT 59.961 37.500 0.00 0.00 0.00 2.27
4028 8805 2.098770 CAGCAAATAAGAGCAAGAGGCC 59.901 50.000 0.00 0.00 46.50 5.19
4076 8853 9.515226 TTATAGCAAAACTAAAGAACAGGTCAT 57.485 29.630 0.00 0.00 33.57 3.06
4079 8856 9.350951 AGTTTATAGCAAAACTAAAGAACAGGT 57.649 29.630 9.35 0.00 45.53 4.00
4098 8875 7.654520 ACAGAACGTTACAAAGCTCAGTTTATA 59.345 33.333 0.00 0.00 0.00 0.98
4099 8876 6.482308 ACAGAACGTTACAAAGCTCAGTTTAT 59.518 34.615 0.00 0.00 0.00 1.40
4117 8894 5.924475 AAATCCTTAAGTCACACAGAACG 57.076 39.130 0.97 0.00 0.00 3.95
4419 9225 7.616673 CAAAGCGTCTCTATTATCTTTCACTG 58.383 38.462 0.00 0.00 0.00 3.66
4420 9226 6.256757 GCAAAGCGTCTCTATTATCTTTCACT 59.743 38.462 0.00 0.00 0.00 3.41
4427 9233 6.589830 TCTTTGCAAAGCGTCTCTATTATC 57.410 37.500 30.35 0.00 35.99 1.75
4432 9238 3.874543 TGTTTCTTTGCAAAGCGTCTCTA 59.125 39.130 30.35 11.81 35.99 2.43
4436 9242 6.452244 AAATATGTTTCTTTGCAAAGCGTC 57.548 33.333 30.35 21.66 35.99 5.19
4492 9301 4.020485 ACTTGTATACGGCCTTCAGTCTTT 60.020 41.667 0.00 0.00 0.00 2.52
4499 9308 4.931002 TGTTTGTACTTGTATACGGCCTTC 59.069 41.667 0.00 0.00 0.00 3.46
4511 9320 2.661718 ACAAGGGGGTGTTTGTACTTG 58.338 47.619 0.00 0.00 40.66 3.16
4512 9321 3.717913 TCTACAAGGGGGTGTTTGTACTT 59.282 43.478 0.00 0.00 38.41 2.24
4513 9322 3.320129 TCTACAAGGGGGTGTTTGTACT 58.680 45.455 0.00 0.00 38.41 2.73
4515 9324 4.792513 TTTCTACAAGGGGGTGTTTGTA 57.207 40.909 0.00 0.00 38.41 2.41
4516 9325 3.673543 TTTCTACAAGGGGGTGTTTGT 57.326 42.857 0.00 0.00 40.39 2.83
4517 9326 5.545063 ATTTTTCTACAAGGGGGTGTTTG 57.455 39.130 0.00 0.00 32.75 2.93
4519 9328 6.208840 TCTATTTTTCTACAAGGGGGTGTT 57.791 37.500 0.00 0.00 32.75 3.32
4520 9329 5.853572 TCTATTTTTCTACAAGGGGGTGT 57.146 39.130 0.00 0.00 35.43 4.16
4521 9330 6.350194 GCTTTCTATTTTTCTACAAGGGGGTG 60.350 42.308 0.00 0.00 0.00 4.61
4522 9331 5.715279 GCTTTCTATTTTTCTACAAGGGGGT 59.285 40.000 0.00 0.00 0.00 4.95
4523 9332 5.714806 TGCTTTCTATTTTTCTACAAGGGGG 59.285 40.000 0.00 0.00 0.00 5.40
4524 9333 6.834168 TGCTTTCTATTTTTCTACAAGGGG 57.166 37.500 0.00 0.00 0.00 4.79
4525 9334 8.522830 TGAATGCTTTCTATTTTTCTACAAGGG 58.477 33.333 12.96 0.00 32.78 3.95
4526 9335 9.912634 TTGAATGCTTTCTATTTTTCTACAAGG 57.087 29.630 12.96 0.00 32.78 3.61
4553 9660 2.814336 AGACTTCGGCAACCTCAAAATC 59.186 45.455 0.00 0.00 0.00 2.17
4576 9683 1.072331 GTTGGTGGAAGCTGGAGAGAA 59.928 52.381 0.00 0.00 33.76 2.87
4578 9685 0.671781 CGTTGGTGGAAGCTGGAGAG 60.672 60.000 0.00 0.00 33.76 3.20
4587 9694 2.046700 GGATCGCCGTTGGTGGAA 60.047 61.111 0.00 0.00 33.43 3.53
4605 9712 3.585862 TCTACATCGACAACTTCTTGGC 58.414 45.455 0.00 0.00 31.08 4.52
4615 9722 3.242772 GCGTCTCTTGATCTACATCGACA 60.243 47.826 0.00 0.00 0.00 4.35
4623 9730 0.738975 CACCCGCGTCTCTTGATCTA 59.261 55.000 4.92 0.00 0.00 1.98
4627 9734 4.373116 GCCACCCGCGTCTCTTGA 62.373 66.667 4.92 0.00 0.00 3.02
4638 9745 2.409870 CGATCTGCTTTGGCCACCC 61.410 63.158 3.88 0.00 37.74 4.61
4646 9753 2.044946 GGGGTGGCGATCTGCTTT 60.045 61.111 8.94 0.00 45.43 3.51
4647 9754 4.115199 GGGGGTGGCGATCTGCTT 62.115 66.667 8.94 0.00 45.43 3.91
4650 9757 3.151710 TACGGGGGTGGCGATCTG 61.152 66.667 0.00 0.00 0.00 2.90
4651 9758 2.838225 CTACGGGGGTGGCGATCT 60.838 66.667 0.00 0.00 0.00 2.75
4652 9759 1.963464 TTTCTACGGGGGTGGCGATC 61.963 60.000 0.00 0.00 0.00 3.69
4654 9761 1.555477 ATTTTCTACGGGGGTGGCGA 61.555 55.000 0.00 0.00 0.00 5.54
4655 9762 0.178533 TATTTTCTACGGGGGTGGCG 59.821 55.000 0.00 0.00 0.00 5.69
4656 9763 1.671979 GTATTTTCTACGGGGGTGGC 58.328 55.000 0.00 0.00 0.00 5.01
4657 9764 1.207811 ACGTATTTTCTACGGGGGTGG 59.792 52.381 9.31 0.00 44.38 4.61
4658 9765 2.094078 TGACGTATTTTCTACGGGGGTG 60.094 50.000 9.31 0.00 44.38 4.61
4659 9766 2.178580 TGACGTATTTTCTACGGGGGT 58.821 47.619 9.31 0.00 44.38 4.95
4660 9767 2.965572 TGACGTATTTTCTACGGGGG 57.034 50.000 9.31 0.00 44.38 5.40
4661 9768 5.464389 CCTTATTGACGTATTTTCTACGGGG 59.536 44.000 9.31 0.00 44.38 5.73
4662 9769 5.464389 CCCTTATTGACGTATTTTCTACGGG 59.536 44.000 9.31 0.00 44.38 5.28
4663 9770 5.050567 GCCCTTATTGACGTATTTTCTACGG 60.051 44.000 9.31 0.00 44.38 4.02
4664 9771 5.521010 TGCCCTTATTGACGTATTTTCTACG 59.479 40.000 3.44 3.44 45.44 3.51
4665 9772 6.913873 TGCCCTTATTGACGTATTTTCTAC 57.086 37.500 0.00 0.00 0.00 2.59
4666 9773 7.011950 CACATGCCCTTATTGACGTATTTTCTA 59.988 37.037 0.00 0.00 0.00 2.10
4668 9775 5.971202 CACATGCCCTTATTGACGTATTTTC 59.029 40.000 0.00 0.00 0.00 2.29
4692 9807 4.685165 GTCTTCGTAGTCTTTGGAGTTTCC 59.315 45.833 0.00 0.00 36.96 3.13
4695 9810 3.640029 TGGTCTTCGTAGTCTTTGGAGTT 59.360 43.478 0.00 0.00 0.00 3.01
4709 9824 0.377203 GCCGGCTTTTATGGTCTTCG 59.623 55.000 22.15 0.00 0.00 3.79
4751 9866 5.808540 TCGTGATTCGATCGATTTAGGTTTT 59.191 36.000 20.18 0.00 44.01 2.43
4772 9887 0.670162 TTCTTCGACGGGTCTTTCGT 59.330 50.000 0.00 0.00 44.03 3.85
4791 9906 1.202927 CCAATGGAAGGTGTGTGGAGT 60.203 52.381 0.00 0.00 0.00 3.85
4846 9979 0.466189 AGTGGCGGCATTATCCAAGG 60.466 55.000 17.19 0.00 0.00 3.61
4867 10000 1.153127 TGTTTGGTTTCGGGCGACT 60.153 52.632 0.00 0.00 0.00 4.18
4869 10002 2.535788 CGTGTTTGGTTTCGGGCGA 61.536 57.895 0.00 0.00 0.00 5.54
4875 10008 5.674933 AGAGATTCTTCGTGTTTGGTTTC 57.325 39.130 0.00 0.00 0.00 2.78
4919 10052 1.739035 CGTACAACGGCATGAGTGGAT 60.739 52.381 0.00 0.00 38.08 3.41
4920 10053 0.389296 CGTACAACGGCATGAGTGGA 60.389 55.000 0.00 0.00 38.08 4.02
4921 10054 0.389296 TCGTACAACGGCATGAGTGG 60.389 55.000 0.00 0.00 42.81 4.00
4943 10076 1.226717 GTCGACATCAGAGCGGACC 60.227 63.158 11.55 0.00 0.00 4.46
4949 10082 0.248417 CAGCGAGGTCGACATCAGAG 60.248 60.000 27.59 14.03 43.02 3.35
4951 10084 1.875813 GCAGCGAGGTCGACATCAG 60.876 63.158 27.59 20.53 43.02 2.90
4961 10094 1.294659 GGTTCTGAACAGCAGCGAGG 61.295 60.000 21.01 0.00 44.52 4.63
4962 10095 0.601046 TGGTTCTGAACAGCAGCGAG 60.601 55.000 21.01 0.00 44.52 5.03
4963 10096 0.035317 ATGGTTCTGAACAGCAGCGA 59.965 50.000 21.01 0.00 44.52 4.93
4964 10097 0.167470 CATGGTTCTGAACAGCAGCG 59.833 55.000 21.01 4.32 44.52 5.18
4965 10098 0.109412 GCATGGTTCTGAACAGCAGC 60.109 55.000 21.01 14.61 44.52 5.25
4966 10099 1.068748 GTGCATGGTTCTGAACAGCAG 60.069 52.381 24.69 13.10 46.31 4.24
4967 10100 0.953727 GTGCATGGTTCTGAACAGCA 59.046 50.000 22.08 22.08 34.43 4.41
4968 10101 1.068748 CAGTGCATGGTTCTGAACAGC 60.069 52.381 21.01 19.66 0.00 4.40
4969 10102 2.497138 TCAGTGCATGGTTCTGAACAG 58.503 47.619 21.01 11.60 35.65 3.16
4970 10103 2.636647 TCAGTGCATGGTTCTGAACA 57.363 45.000 21.01 8.66 35.65 3.18
4971 10104 3.482722 CATCAGTGCATGGTTCTGAAC 57.517 47.619 12.05 12.05 40.73 3.18
4984 10117 1.829849 TCAGAGAAGAGGGCATCAGTG 59.170 52.381 0.58 0.00 0.00 3.66
4985 10118 2.244486 TCAGAGAAGAGGGCATCAGT 57.756 50.000 0.58 0.00 0.00 3.41
4986 10119 4.952071 TTATCAGAGAAGAGGGCATCAG 57.048 45.455 0.58 0.00 0.00 2.90
4987 10120 4.285517 GGATTATCAGAGAAGAGGGCATCA 59.714 45.833 0.58 0.00 0.00 3.07
4988 10121 4.620332 CGGATTATCAGAGAAGAGGGCATC 60.620 50.000 0.00 0.00 0.00 3.91
4989 10122 3.260380 CGGATTATCAGAGAAGAGGGCAT 59.740 47.826 0.00 0.00 0.00 4.40
4990 10123 2.630098 CGGATTATCAGAGAAGAGGGCA 59.370 50.000 0.00 0.00 0.00 5.36
4991 10124 2.028567 CCGGATTATCAGAGAAGAGGGC 60.029 54.545 0.00 0.00 0.00 5.19
4992 10125 2.028567 GCCGGATTATCAGAGAAGAGGG 60.029 54.545 5.05 0.00 0.00 4.30
4993 10126 2.028567 GGCCGGATTATCAGAGAAGAGG 60.029 54.545 5.05 0.00 0.00 3.69
4994 10127 2.630098 TGGCCGGATTATCAGAGAAGAG 59.370 50.000 5.05 0.00 0.00 2.85
4995 10128 2.630098 CTGGCCGGATTATCAGAGAAGA 59.370 50.000 5.28 0.00 0.00 2.87
4996 10129 2.289320 CCTGGCCGGATTATCAGAGAAG 60.289 54.545 15.09 0.00 33.16 2.85
4997 10130 1.694150 CCTGGCCGGATTATCAGAGAA 59.306 52.381 15.09 0.00 33.16 2.87
4998 10131 1.342074 CCTGGCCGGATTATCAGAGA 58.658 55.000 15.09 0.00 33.16 3.10
4999 10132 1.051812 ACCTGGCCGGATTATCAGAG 58.948 55.000 15.09 0.00 36.31 3.35
5000 10133 1.140852 CAACCTGGCCGGATTATCAGA 59.859 52.381 15.09 0.00 36.31 3.27
5001 10134 1.140852 TCAACCTGGCCGGATTATCAG 59.859 52.381 15.09 3.88 36.31 2.90
5002 10135 1.140852 CTCAACCTGGCCGGATTATCA 59.859 52.381 15.09 0.00 36.31 2.15
5003 10136 1.884235 CTCAACCTGGCCGGATTATC 58.116 55.000 15.09 0.00 36.31 1.75
5004 10137 0.179018 GCTCAACCTGGCCGGATTAT 60.179 55.000 15.09 0.00 36.31 1.28
5005 10138 1.223487 GCTCAACCTGGCCGGATTA 59.777 57.895 15.09 0.00 36.31 1.75
5006 10139 2.044946 GCTCAACCTGGCCGGATT 60.045 61.111 15.09 0.00 36.31 3.01
5007 10140 4.115199 GGCTCAACCTGGCCGGAT 62.115 66.667 15.09 0.00 38.91 4.18
5012 10145 3.628646 ATCGGTGGCTCAACCTGGC 62.629 63.158 0.00 0.00 40.22 4.85
5013 10146 1.746615 CATCGGTGGCTCAACCTGG 60.747 63.158 0.00 0.00 40.22 4.45
5014 10147 0.321564 TTCATCGGTGGCTCAACCTG 60.322 55.000 0.00 0.00 40.22 4.00
5015 10148 0.036010 CTTCATCGGTGGCTCAACCT 60.036 55.000 0.00 0.00 40.22 3.50
5016 10149 0.036388 TCTTCATCGGTGGCTCAACC 60.036 55.000 0.00 0.00 39.84 3.77
5017 10150 1.936547 GATCTTCATCGGTGGCTCAAC 59.063 52.381 0.00 0.00 0.00 3.18
5018 10151 2.315925 GATCTTCATCGGTGGCTCAA 57.684 50.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.