Multiple sequence alignment - TraesCS1D01G236300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G236300 chr1D 100.000 8857 0 0 1 8857 325676168 325685024 0.000000e+00 16356.0
1 TraesCS1D01G236300 chr1D 90.000 210 15 5 4529 4736 891667 891872 5.270000e-67 267.0
2 TraesCS1D01G236300 chr1D 96.711 152 5 0 583 734 463344303 463344454 4.100000e-63 254.0
3 TraesCS1D01G236300 chr1D 96.078 153 6 0 583 735 367162532 367162684 5.310000e-62 250.0
4 TraesCS1D01G236300 chr1D 96.053 152 6 0 584 735 452901849 452901698 1.910000e-61 248.0
5 TraesCS1D01G236300 chr1A 96.390 3130 95 13 5158 8277 418044057 418040936 0.000000e+00 5138.0
6 TraesCS1D01G236300 chr1A 92.558 2768 95 38 764 3498 418047067 418044378 0.000000e+00 3868.0
7 TraesCS1D01G236300 chr1A 89.688 417 37 2 3560 3976 323983778 323983368 2.190000e-145 527.0
8 TraesCS1D01G236300 chr1A 84.981 526 65 7 3559 4081 281366489 281365975 1.020000e-143 521.0
9 TraesCS1D01G236300 chr1A 96.678 301 9 1 4861 5161 418044387 418044088 4.770000e-137 499.0
10 TraesCS1D01G236300 chr1A 92.447 331 22 2 8530 8857 418040875 418040545 3.740000e-128 470.0
11 TraesCS1D01G236300 chr1A 82.294 401 35 16 189 580 418047466 418047093 1.860000e-81 315.0
12 TraesCS1D01G236300 chr1A 83.099 355 25 11 4383 4736 323983161 323982841 3.130000e-74 291.0
13 TraesCS1D01G236300 chr1A 89.573 211 16 5 4529 4736 281365412 281365205 6.820000e-66 263.0
14 TraesCS1D01G236300 chr1A 76.623 308 43 20 8568 8848 76485467 76485772 9.270000e-30 143.0
15 TraesCS1D01G236300 chr1A 92.593 81 5 1 79 158 418047743 418047663 2.020000e-21 115.0
16 TraesCS1D01G236300 chr1B 92.110 2839 98 50 736 3504 438695775 438698557 0.000000e+00 3886.0
17 TraesCS1D01G236300 chr1B 95.582 1788 62 9 6909 8682 438700674 438702458 0.000000e+00 2848.0
18 TraesCS1D01G236300 chr1B 87.229 1292 104 37 5274 6532 438699174 438700437 0.000000e+00 1415.0
19 TraesCS1D01G236300 chr1B 84.296 433 39 16 4737 5159 438698697 438699110 6.440000e-106 396.0
20 TraesCS1D01G236300 chr1B 81.463 410 40 15 175 578 438695406 438695785 4.020000e-78 303.0
21 TraesCS1D01G236300 chr1B 90.233 215 15 6 6533 6743 438700479 438700691 8.760000e-70 276.0
22 TraesCS1D01G236300 chr1B 88.312 154 14 3 3410 3560 438698553 438698705 1.960000e-41 182.0
23 TraesCS1D01G236300 chr7B 82.407 1188 125 37 3561 4742 356985724 356984615 0.000000e+00 959.0
24 TraesCS1D01G236300 chr7B 78.420 709 79 41 4041 4738 687808597 687807952 2.320000e-105 394.0
25 TraesCS1D01G236300 chr7B 86.614 254 28 5 4487 4735 687055775 687056027 8.760000e-70 276.0
26 TraesCS1D01G236300 chr7B 91.262 103 9 0 4041 4143 687842143 687842041 3.330000e-29 141.0
27 TraesCS1D01G236300 chr7B 83.212 137 18 5 8613 8745 103998705 103998570 4.340000e-23 121.0
28 TraesCS1D01G236300 chr7B 78.531 177 25 10 8568 8735 424059534 424059362 4.370000e-18 104.0
29 TraesCS1D01G236300 chr4A 81.349 1201 126 45 3556 4736 626649649 626650771 0.000000e+00 887.0
30 TraesCS1D01G236300 chr4A 89.247 93 9 1 6806 6897 179706952 179707044 2.020000e-21 115.0
31 TraesCS1D01G236300 chr7A 82.634 858 99 30 3561 4411 701624273 701623459 0.000000e+00 713.0
32 TraesCS1D01G236300 chr7A 79.245 159 23 8 8568 8718 470595576 470595420 1.570000e-17 102.0
33 TraesCS1D01G236300 chr2B 83.187 684 81 18 3560 4237 117877607 117878262 5.920000e-166 595.0
34 TraesCS1D01G236300 chr2B 85.551 526 66 5 3560 4081 253270048 253270567 7.820000e-150 542.0
35 TraesCS1D01G236300 chr2B 87.823 271 22 7 4470 4736 117879462 117879725 3.110000e-79 307.0
36 TraesCS1D01G236300 chr2B 90.047 211 15 5 4529 4736 253271579 253271786 1.470000e-67 268.0
37 TraesCS1D01G236300 chr2D 83.759 665 64 19 3561 4223 41220583 41219961 2.750000e-164 590.0
38 TraesCS1D01G236300 chr2D 85.333 525 57 9 3561 4079 306770480 306769970 7.880000e-145 525.0
39 TraesCS1D01G236300 chr2D 85.160 438 28 12 4300 4735 592047644 592048046 1.780000e-111 414.0
40 TraesCS1D01G236300 chr2D 95.541 157 3 1 583 735 296709957 296710113 1.910000e-61 248.0
41 TraesCS1D01G236300 chr3A 86.857 525 54 7 3561 4081 597119990 597119477 2.770000e-159 573.0
42 TraesCS1D01G236300 chr6B 82.602 684 84 21 3561 4237 86645113 86645768 9.980000e-159 571.0
43 TraesCS1D01G236300 chr6B 87.823 271 20 10 4470 4734 86645910 86646173 1.120000e-78 305.0
44 TraesCS1D01G236300 chr6B 83.333 162 21 6 6752 6909 532385202 532385361 2.580000e-30 145.0
45 TraesCS1D01G236300 chr6B 90.141 71 5 2 6744 6813 633848292 633848361 3.410000e-14 91.6
46 TraesCS1D01G236300 chr5A 86.502 526 57 8 3559 4081 528826534 528827048 4.640000e-157 566.0
47 TraesCS1D01G236300 chr5A 79.787 188 27 10 8567 8746 661988413 661988597 9.340000e-25 126.0
48 TraesCS1D01G236300 chr4B 84.895 523 62 12 3564 4081 88380732 88380222 6.130000e-141 512.0
49 TraesCS1D01G236300 chr4B 82.803 157 19 7 6761 6916 375375485 375375336 5.580000e-27 134.0
50 TraesCS1D01G236300 chr4D 97.403 154 3 1 583 735 447293812 447293659 2.450000e-65 261.0
51 TraesCS1D01G236300 chr4D 96.711 152 5 0 583 734 351463646 351463797 4.100000e-63 254.0
52 TraesCS1D01G236300 chr4D 82.692 156 22 4 6761 6916 301509726 301509576 5.580000e-27 134.0
53 TraesCS1D01G236300 chr4D 79.618 157 25 5 8567 8719 481380112 481380265 1.220000e-18 106.0
54 TraesCS1D01G236300 chr3D 96.753 154 5 0 582 735 488863580 488863427 3.170000e-64 257.0
55 TraesCS1D01G236300 chr3D 96.129 155 6 0 579 733 529127157 529127311 4.100000e-63 254.0
56 TraesCS1D01G236300 chr3D 89.262 149 15 1 6766 6913 554978631 554978779 1.520000e-42 185.0
57 TraesCS1D01G236300 chr3D 97.959 49 1 0 4383 4431 79599587 79599635 1.580000e-12 86.1
58 TraesCS1D01G236300 chrUn 96.732 153 5 0 583 735 64153173 64153325 1.140000e-63 255.0
59 TraesCS1D01G236300 chr3B 83.273 275 34 10 4470 4734 715003163 715003435 8.880000e-60 243.0
60 TraesCS1D01G236300 chr3B 77.151 337 63 11 5534 5865 760134654 760134981 5.460000e-42 183.0
61 TraesCS1D01G236300 chr3B 93.548 62 3 1 4419 4479 715003130 715003191 3.410000e-14 91.6
62 TraesCS1D01G236300 chr6A 81.437 167 21 8 6754 6915 495702386 495702547 2.600000e-25 128.0
63 TraesCS1D01G236300 chr7D 78.090 178 25 10 8568 8735 409511224 409511051 5.660000e-17 100.0
64 TraesCS1D01G236300 chr5D 93.333 60 4 0 6754 6813 410642368 410642427 1.220000e-13 89.8
65 TraesCS1D01G236300 chr2A 82.500 80 9 2 6752 6831 14734632 14734706 2.060000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G236300 chr1D 325676168 325685024 8856 False 16356.000000 16356 100.000000 1 8857 1 chr1D.!!$F2 8856
1 TraesCS1D01G236300 chr1A 418040545 418047743 7198 True 1734.166667 5138 92.160000 79 8857 6 chr1A.!!$R3 8778
2 TraesCS1D01G236300 chr1A 323982841 323983778 937 True 409.000000 527 86.393500 3560 4736 2 chr1A.!!$R2 1176
3 TraesCS1D01G236300 chr1A 281365205 281366489 1284 True 392.000000 521 87.277000 3559 4736 2 chr1A.!!$R1 1177
4 TraesCS1D01G236300 chr1B 438695406 438702458 7052 False 1329.428571 3886 88.460714 175 8682 7 chr1B.!!$F1 8507
5 TraesCS1D01G236300 chr7B 356984615 356985724 1109 True 959.000000 959 82.407000 3561 4742 1 chr7B.!!$R2 1181
6 TraesCS1D01G236300 chr7B 687807952 687808597 645 True 394.000000 394 78.420000 4041 4738 1 chr7B.!!$R4 697
7 TraesCS1D01G236300 chr4A 626649649 626650771 1122 False 887.000000 887 81.349000 3556 4736 1 chr4A.!!$F2 1180
8 TraesCS1D01G236300 chr7A 701623459 701624273 814 True 713.000000 713 82.634000 3561 4411 1 chr7A.!!$R2 850
9 TraesCS1D01G236300 chr2B 117877607 117879725 2118 False 451.000000 595 85.505000 3560 4736 2 chr2B.!!$F1 1176
10 TraesCS1D01G236300 chr2B 253270048 253271786 1738 False 405.000000 542 87.799000 3560 4736 2 chr2B.!!$F2 1176
11 TraesCS1D01G236300 chr2D 41219961 41220583 622 True 590.000000 590 83.759000 3561 4223 1 chr2D.!!$R1 662
12 TraesCS1D01G236300 chr2D 306769970 306770480 510 True 525.000000 525 85.333000 3561 4079 1 chr2D.!!$R2 518
13 TraesCS1D01G236300 chr3A 597119477 597119990 513 True 573.000000 573 86.857000 3561 4081 1 chr3A.!!$R1 520
14 TraesCS1D01G236300 chr6B 86645113 86646173 1060 False 438.000000 571 85.212500 3561 4734 2 chr6B.!!$F3 1173
15 TraesCS1D01G236300 chr5A 528826534 528827048 514 False 566.000000 566 86.502000 3559 4081 1 chr5A.!!$F1 522
16 TraesCS1D01G236300 chr4B 88380222 88380732 510 True 512.000000 512 84.895000 3564 4081 1 chr4B.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
377 547 0.174162 AACTTATTACCGAGCGGCGT 59.826 50.0 9.37 0.0 39.32 5.68 F
621 803 0.181114 TTGACTGTGCAGCTGAGGTT 59.819 50.0 20.43 0.0 0.00 3.50 F
727 909 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.0 7.61 0.0 0.00 2.57 F
1637 1874 0.110192 GCGGAGAAAAGTCAAAGCGG 60.110 55.0 0.00 0.0 0.00 5.52 F
2042 2284 0.682209 GCTGGCAGATTGGACCACAT 60.682 55.0 20.86 0.0 0.00 3.21 F
3808 4196 0.389817 CGTGGACAGAATGCCTCGAA 60.390 55.0 0.00 0.0 45.26 3.71 F
4029 4430 0.028505 CACACACAGCAAGCACACTC 59.971 55.0 0.00 0.0 0.00 3.51 F
4055 4475 0.108992 CAAGCATGGAAAGCACGCAT 60.109 50.0 0.00 0.0 0.00 4.73 F
4484 6889 0.340208 AATCGGGAGAGAAGGGGTCT 59.660 55.0 0.00 0.0 45.48 3.85 F
5186 7637 0.535328 TTCGGCACCAATCCGTTTCA 60.535 50.0 1.22 0.0 46.49 2.69 F
5958 8429 0.913205 GGGAGGGGAGAGGAAAGTTC 59.087 60.0 0.00 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1396 1633 1.153862 GACAGAGAGCACAGCGGAG 60.154 63.158 0.0 0.0 0.00 4.63 R
1637 1874 2.164422 GGATAAAGCAGACTTGGGCAAC 59.836 50.000 0.0 0.0 35.85 4.17 R
1942 2180 2.482336 TCCCATGATCGAAAAACACACG 59.518 45.455 0.0 0.0 0.00 4.49 R
2924 3176 1.271543 TGGTTCATCCACTGCCAAGAG 60.272 52.381 0.0 0.0 41.93 2.85 R
4010 4411 0.028505 GAGTGTGCTTGCTGTGTGTG 59.971 55.000 0.0 0.0 0.00 3.82 R
4681 7092 0.033894 GGTTCCCTATTTGGCCCGAA 60.034 55.000 0.0 0.0 0.00 4.30 R
5751 8211 1.064314 ACACCCACAGTTGGTAAGCAA 60.064 47.619 0.0 0.0 42.10 3.91 R
5999 8470 6.263344 CAATTTCTGCACTCATCTATGGTTG 58.737 40.000 0.0 0.0 0.00 3.77 R
6099 8570 3.637769 TCCTGTTTTTGTAAGCCTGGTT 58.362 40.909 0.0 0.0 0.00 3.67 R
7008 9533 2.104792 TCATATTCAGGGCTAGTGTGGC 59.895 50.000 0.0 0.0 0.00 5.01 R
7948 10481 1.006571 ACGACGACACATGGTGGAC 60.007 57.895 0.0 0.0 37.94 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 9.919416 TCAAAACATCATATATTTCTGAAGGGA 57.081 29.630 0.00 0.00 0.00 4.20
31 32 8.930846 AAACATCATATATTTCTGAAGGGAGG 57.069 34.615 0.00 0.00 0.00 4.30
32 33 7.025520 ACATCATATATTTCTGAAGGGAGGG 57.974 40.000 0.00 0.00 0.00 4.30
33 34 6.794493 ACATCATATATTTCTGAAGGGAGGGA 59.206 38.462 0.00 0.00 0.00 4.20
34 35 6.942163 TCATATATTTCTGAAGGGAGGGAG 57.058 41.667 0.00 0.00 0.00 4.30
35 36 6.393897 TCATATATTTCTGAAGGGAGGGAGT 58.606 40.000 0.00 0.00 0.00 3.85
36 37 7.544650 TCATATATTTCTGAAGGGAGGGAGTA 58.455 38.462 0.00 0.00 0.00 2.59
37 38 8.016652 TCATATATTTCTGAAGGGAGGGAGTAA 58.983 37.037 0.00 0.00 0.00 2.24
38 39 4.846168 ATTTCTGAAGGGAGGGAGTAAC 57.154 45.455 0.00 0.00 0.00 2.50
39 40 3.269592 TTCTGAAGGGAGGGAGTAACA 57.730 47.619 0.00 0.00 0.00 2.41
40 41 3.491766 TCTGAAGGGAGGGAGTAACAT 57.508 47.619 0.00 0.00 0.00 2.71
41 42 3.803340 TCTGAAGGGAGGGAGTAACATT 58.197 45.455 0.00 0.00 0.00 2.71
42 43 4.175962 TCTGAAGGGAGGGAGTAACATTT 58.824 43.478 0.00 0.00 0.00 2.32
43 44 4.601857 TCTGAAGGGAGGGAGTAACATTTT 59.398 41.667 0.00 0.00 0.00 1.82
44 45 5.074515 TCTGAAGGGAGGGAGTAACATTTTT 59.925 40.000 0.00 0.00 0.00 1.94
111 112 5.010282 ACATTTTAACAACTAGCTGGGAGG 58.990 41.667 0.85 0.00 0.00 4.30
116 117 1.690985 AACTAGCTGGGAGGGGAGC 60.691 63.158 0.85 0.00 35.28 4.70
125 126 4.459089 GAGGGGAGCGGCTGTCAC 62.459 72.222 7.50 0.00 0.00 3.67
171 172 3.082579 TTTTTGCGGGCAAGCCGTT 62.083 52.632 6.18 0.00 37.24 4.44
172 173 2.579684 TTTTTGCGGGCAAGCCGTTT 62.580 50.000 6.18 0.00 37.24 3.60
173 174 2.579684 TTTTGCGGGCAAGCCGTTTT 62.580 50.000 6.18 0.00 37.24 2.43
272 442 2.160219 GCAAGCATCACATCGTTTGAGA 59.840 45.455 0.00 0.00 0.00 3.27
313 483 6.237808 GCATTTTCTGCGAAAGAACTTTGAAA 60.238 34.615 4.48 5.71 44.77 2.69
350 520 3.994392 TCTGAATTTTACACGAGCTGACC 59.006 43.478 0.00 0.00 0.00 4.02
364 534 4.006319 GAGCTGACCTTGCTTGAACTTAT 58.994 43.478 0.00 0.00 41.30 1.73
365 535 4.401925 AGCTGACCTTGCTTGAACTTATT 58.598 39.130 0.00 0.00 37.52 1.40
366 536 5.560724 AGCTGACCTTGCTTGAACTTATTA 58.439 37.500 0.00 0.00 37.52 0.98
367 537 5.412904 AGCTGACCTTGCTTGAACTTATTAC 59.587 40.000 0.00 0.00 37.52 1.89
368 538 5.392057 GCTGACCTTGCTTGAACTTATTACC 60.392 44.000 0.00 0.00 0.00 2.85
369 539 4.693566 TGACCTTGCTTGAACTTATTACCG 59.306 41.667 0.00 0.00 0.00 4.02
373 543 2.927477 TGCTTGAACTTATTACCGAGCG 59.073 45.455 0.00 0.00 38.53 5.03
376 546 0.850856 GAACTTATTACCGAGCGGCG 59.149 55.000 9.14 0.51 39.32 6.46
377 547 0.174162 AACTTATTACCGAGCGGCGT 59.826 50.000 9.37 0.00 39.32 5.68
378 548 0.526954 ACTTATTACCGAGCGGCGTG 60.527 55.000 9.37 0.00 39.32 5.34
379 549 1.818221 CTTATTACCGAGCGGCGTGC 61.818 60.000 9.37 0.00 46.98 5.34
418 588 7.487189 CCACATAAATCATCTTGACTTTGCTTC 59.513 37.037 0.00 0.00 0.00 3.86
419 589 7.487189 CACATAAATCATCTTGACTTTGCTTCC 59.513 37.037 0.00 0.00 0.00 3.46
422 592 5.578005 ATCATCTTGACTTTGCTTCCATG 57.422 39.130 0.00 0.00 0.00 3.66
607 789 4.353437 GGCGTCGACCCGTTGACT 62.353 66.667 10.58 0.00 40.90 3.41
608 790 3.103911 GCGTCGACCCGTTGACTG 61.104 66.667 10.58 7.77 40.90 3.51
609 791 2.333938 CGTCGACCCGTTGACTGT 59.666 61.111 10.58 0.00 40.90 3.55
610 792 2.014554 CGTCGACCCGTTGACTGTG 61.015 63.158 10.58 0.00 40.90 3.66
611 793 2.028484 TCGACCCGTTGACTGTGC 59.972 61.111 0.00 0.00 0.00 4.57
612 794 2.279851 CGACCCGTTGACTGTGCA 60.280 61.111 0.00 0.00 0.00 4.57
613 795 2.310233 CGACCCGTTGACTGTGCAG 61.310 63.158 0.00 0.00 0.00 4.41
614 796 2.591715 ACCCGTTGACTGTGCAGC 60.592 61.111 0.00 0.00 0.00 5.25
615 797 2.281070 CCCGTTGACTGTGCAGCT 60.281 61.111 0.00 0.00 0.00 4.24
616 798 2.610694 CCCGTTGACTGTGCAGCTG 61.611 63.158 10.11 10.11 0.00 4.24
617 799 1.595109 CCGTTGACTGTGCAGCTGA 60.595 57.895 20.43 0.00 0.00 4.26
618 800 1.563435 CCGTTGACTGTGCAGCTGAG 61.563 60.000 20.43 8.80 0.00 3.35
619 801 1.563435 CGTTGACTGTGCAGCTGAGG 61.563 60.000 20.43 6.01 0.00 3.86
620 802 0.533755 GTTGACTGTGCAGCTGAGGT 60.534 55.000 20.43 9.42 0.00 3.85
621 803 0.181114 TTGACTGTGCAGCTGAGGTT 59.819 50.000 20.43 0.00 0.00 3.50
622 804 0.533531 TGACTGTGCAGCTGAGGTTG 60.534 55.000 20.43 5.27 0.00 3.77
629 811 2.033757 AGCTGAGGTTGCTGCCAG 59.966 61.111 0.00 0.00 39.56 4.85
630 812 3.745803 GCTGAGGTTGCTGCCAGC 61.746 66.667 10.45 10.45 44.00 4.85
631 813 3.060615 CTGAGGTTGCTGCCAGCC 61.061 66.667 15.29 0.00 41.51 4.85
632 814 4.666253 TGAGGTTGCTGCCAGCCC 62.666 66.667 15.29 9.16 42.79 5.19
633 815 4.666253 GAGGTTGCTGCCAGCCCA 62.666 66.667 15.29 0.00 42.79 5.36
634 816 4.982701 AGGTTGCTGCCAGCCCAC 62.983 66.667 15.29 10.81 42.79 4.61
643 825 4.760047 CCAGCCCACCCGAGTTCG 62.760 72.222 0.00 0.00 39.44 3.95
644 826 3.691342 CAGCCCACCCGAGTTCGA 61.691 66.667 2.59 0.00 43.02 3.71
645 827 3.382832 AGCCCACCCGAGTTCGAG 61.383 66.667 2.59 0.00 43.02 4.04
646 828 3.692406 GCCCACCCGAGTTCGAGT 61.692 66.667 2.59 0.00 43.02 4.18
647 829 2.572284 CCCACCCGAGTTCGAGTC 59.428 66.667 2.59 0.00 43.02 3.36
648 830 2.572284 CCACCCGAGTTCGAGTCC 59.428 66.667 2.59 0.00 43.02 3.85
649 831 2.572284 CACCCGAGTTCGAGTCCC 59.428 66.667 2.59 0.00 43.02 4.46
650 832 3.060615 ACCCGAGTTCGAGTCCCG 61.061 66.667 2.59 0.00 43.02 5.14
651 833 3.823330 CCCGAGTTCGAGTCCCGG 61.823 72.222 2.59 0.00 43.02 5.73
652 834 4.493747 CCGAGTTCGAGTCCCGGC 62.494 72.222 0.00 0.00 43.02 6.13
653 835 3.744719 CGAGTTCGAGTCCCGGCA 61.745 66.667 0.00 0.00 43.02 5.69
654 836 2.126031 GAGTTCGAGTCCCGGCAC 60.126 66.667 0.00 0.00 39.14 5.01
678 860 2.665185 GCGGTGCTCACGGAGTTT 60.665 61.111 11.07 0.00 41.61 2.66
679 861 2.668280 GCGGTGCTCACGGAGTTTC 61.668 63.158 11.07 0.00 41.61 2.78
680 862 1.006102 CGGTGCTCACGGAGTTTCT 60.006 57.895 1.90 0.00 41.61 2.52
681 863 1.009389 CGGTGCTCACGGAGTTTCTC 61.009 60.000 1.90 0.00 41.61 2.87
682 864 0.670854 GGTGCTCACGGAGTTTCTCC 60.671 60.000 5.79 5.79 46.44 3.71
696 878 7.323049 GGAGTTTCTCCTATAAAGAAAAGCC 57.677 40.000 8.38 10.42 46.41 4.35
697 879 6.037281 GGAGTTTCTCCTATAAAGAAAAGCCG 59.963 42.308 8.38 0.00 46.41 5.52
698 880 6.708285 AGTTTCTCCTATAAAGAAAAGCCGA 58.292 36.000 10.15 0.00 42.63 5.54
699 881 6.594547 AGTTTCTCCTATAAAGAAAAGCCGAC 59.405 38.462 10.15 1.39 42.63 4.79
700 882 4.679662 TCTCCTATAAAGAAAAGCCGACG 58.320 43.478 0.00 0.00 0.00 5.12
701 883 4.400251 TCTCCTATAAAGAAAAGCCGACGA 59.600 41.667 0.00 0.00 0.00 4.20
702 884 4.679662 TCCTATAAAGAAAAGCCGACGAG 58.320 43.478 0.00 0.00 0.00 4.18
703 885 3.802685 CCTATAAAGAAAAGCCGACGAGG 59.197 47.826 0.00 0.00 44.97 4.63
704 886 2.088950 TAAAGAAAAGCCGACGAGGG 57.911 50.000 0.00 0.00 41.48 4.30
720 902 4.434483 GGTTAGCCCTTGGGTTGG 57.566 61.111 7.61 0.00 34.28 3.77
721 903 1.463375 GGTTAGCCCTTGGGTTGGT 59.537 57.895 7.61 0.00 34.28 3.67
722 904 0.611062 GGTTAGCCCTTGGGTTGGTC 60.611 60.000 7.61 0.00 34.28 4.02
723 905 0.404426 GTTAGCCCTTGGGTTGGTCT 59.596 55.000 7.61 0.00 34.28 3.85
724 906 0.696501 TTAGCCCTTGGGTTGGTCTC 59.303 55.000 7.61 0.00 34.28 3.36
725 907 0.474854 TAGCCCTTGGGTTGGTCTCA 60.475 55.000 7.61 0.00 34.28 3.27
726 908 1.142688 AGCCCTTGGGTTGGTCTCAT 61.143 55.000 7.61 0.00 0.00 2.90
727 909 0.251787 GCCCTTGGGTTGGTCTCATT 60.252 55.000 7.61 0.00 0.00 2.57
728 910 1.827245 GCCCTTGGGTTGGTCTCATTT 60.827 52.381 7.61 0.00 0.00 2.32
729 911 2.608623 CCCTTGGGTTGGTCTCATTTT 58.391 47.619 0.00 0.00 0.00 1.82
730 912 2.972021 CCCTTGGGTTGGTCTCATTTTT 59.028 45.455 0.00 0.00 0.00 1.94
751 933 4.463050 TTTTTAAAGAAGGGGGAGCTGA 57.537 40.909 0.00 0.00 0.00 4.26
752 934 3.721087 TTTAAAGAAGGGGGAGCTGAG 57.279 47.619 0.00 0.00 0.00 3.35
753 935 2.642171 TAAAGAAGGGGGAGCTGAGA 57.358 50.000 0.00 0.00 0.00 3.27
754 936 1.747444 AAAGAAGGGGGAGCTGAGAA 58.253 50.000 0.00 0.00 0.00 2.87
902 1100 6.687081 TTTTACTATTAATTGCCCCGACTG 57.313 37.500 0.00 0.00 0.00 3.51
1476 1713 1.401199 GCTGCCTGATTTCTGCTTCTC 59.599 52.381 0.00 0.00 0.00 2.87
1487 1724 1.301677 CTGCTTCTCCCGGCTGAAAC 61.302 60.000 0.00 0.00 0.00 2.78
1518 1755 0.612732 TGCTGGGAATTGGGCTTCTG 60.613 55.000 0.00 0.00 0.00 3.02
1634 1871 1.537202 CCCTGCGGAGAAAAGTCAAAG 59.463 52.381 5.10 0.00 0.00 2.77
1637 1874 0.110192 GCGGAGAAAAGTCAAAGCGG 60.110 55.000 0.00 0.00 0.00 5.52
1667 1904 1.735571 TCTGCTTTATCCCGCGTTTTC 59.264 47.619 4.92 0.00 0.00 2.29
1879 2117 5.861787 GGTGTCGGATTGGTAAATTTTCTTG 59.138 40.000 0.00 0.00 0.00 3.02
1890 2128 7.287061 TGGTAAATTTTCTTGTCTGGAGAAGA 58.713 34.615 6.16 6.16 38.70 2.87
1892 2130 8.797438 GGTAAATTTTCTTGTCTGGAGAAGATT 58.203 33.333 10.27 5.53 39.90 2.40
1899 2137 8.980481 TTCTTGTCTGGAGAAGATTAGTTTTT 57.020 30.769 10.27 0.00 39.90 1.94
1900 2138 8.608844 TCTTGTCTGGAGAAGATTAGTTTTTC 57.391 34.615 6.16 0.00 36.03 2.29
2042 2284 0.682209 GCTGGCAGATTGGACCACAT 60.682 55.000 20.86 0.00 0.00 3.21
2073 2317 7.796054 AGCTGTCCTTGTTAGTACATATTCAT 58.204 34.615 0.00 0.00 33.44 2.57
2219 2463 3.404899 TCAAGGAATTTACCTTCGCGTT 58.595 40.909 5.77 0.00 46.94 4.84
2221 2465 1.467342 AGGAATTTACCTTCGCGTTGC 59.533 47.619 5.77 0.00 36.86 4.17
2366 2612 9.495382 AACTATTTAGAACTTGTCCTAGGAGAT 57.505 33.333 13.15 0.00 0.00 2.75
2544 2791 2.290367 TCACAATCCTGTTTGCGACTTG 59.710 45.455 0.00 0.00 31.64 3.16
2550 2800 1.136690 CTGTTTGCGACTTGCTACGA 58.863 50.000 0.00 0.00 46.63 3.43
2824 3076 2.422127 ACACAACCCTTCTTGTTTCACG 59.578 45.455 0.00 0.00 31.73 4.35
2924 3176 3.010420 GGAGCTCTTGAATGTTGGGTAC 58.990 50.000 14.64 0.00 0.00 3.34
2955 3207 2.025981 TGGATGAACCAGGAATGGAGTG 60.026 50.000 0.31 0.00 44.64 3.51
3026 3278 1.283321 AGAGATTCCCAGGAAGTTGGC 59.717 52.381 5.21 0.00 37.56 4.52
3045 3297 2.163010 GGCTCATTGTTGGTGATCTGTG 59.837 50.000 0.00 0.00 0.00 3.66
3048 3300 4.022935 GCTCATTGTTGGTGATCTGTGAAA 60.023 41.667 0.00 0.00 0.00 2.69
3049 3301 5.507817 GCTCATTGTTGGTGATCTGTGAAAA 60.508 40.000 0.00 0.00 0.00 2.29
3050 3302 6.462552 TCATTGTTGGTGATCTGTGAAAAA 57.537 33.333 0.00 0.00 0.00 1.94
3365 3647 5.941948 AGGCAAACTGTGTTAATGTCTAC 57.058 39.130 0.00 0.00 0.00 2.59
3387 3669 2.031420 GTGGAATGCATGTCATCATCCG 60.031 50.000 0.00 0.00 35.68 4.18
3404 3686 2.511659 TCCGTTATGCTAGCCGTAGAT 58.488 47.619 13.29 0.50 0.00 1.98
3405 3687 2.889045 TCCGTTATGCTAGCCGTAGATT 59.111 45.455 13.29 0.00 0.00 2.40
3503 3855 1.347707 TGTTGGCACCTCTAGTTCCAG 59.652 52.381 0.00 0.00 43.09 3.86
3513 3865 2.298729 CTCTAGTTCCAGGAGCTATGGC 59.701 54.545 13.16 0.00 37.76 4.40
3530 3885 1.899814 TGGCACAGTTAGACCCTACTG 59.100 52.381 0.00 0.00 45.61 2.74
3549 3904 6.311445 CCTACTGCTTGAAACTGTAGTGTATG 59.689 42.308 10.39 0.00 37.68 2.39
3551 3906 6.467677 ACTGCTTGAAACTGTAGTGTATGAT 58.532 36.000 0.00 0.00 0.00 2.45
3552 3907 6.936900 ACTGCTTGAAACTGTAGTGTATGATT 59.063 34.615 0.00 0.00 0.00 2.57
3553 3908 7.095060 ACTGCTTGAAACTGTAGTGTATGATTG 60.095 37.037 0.00 0.00 0.00 2.67
3554 3909 6.710295 TGCTTGAAACTGTAGTGTATGATTGT 59.290 34.615 0.00 0.00 0.00 2.71
3608 3963 9.740710 TTTCTTAAAATTTGGTTCCCTTTTTGA 57.259 25.926 0.00 0.00 0.00 2.69
3775 4134 1.221414 ACTCGCAAGTCAGAAGCAAC 58.779 50.000 0.00 0.00 39.48 4.17
3780 4139 0.588252 CAAGTCAGAAGCAACGGTGG 59.412 55.000 0.90 0.00 0.00 4.61
3808 4196 0.389817 CGTGGACAGAATGCCTCGAA 60.390 55.000 0.00 0.00 45.26 3.71
3824 4212 1.952990 TCGAAGCATTGGAGTTGCAAA 59.047 42.857 0.00 0.00 42.62 3.68
3879 4270 6.706270 ACTCATATTAATAAGAACCGGTGCAG 59.294 38.462 16.99 0.52 0.00 4.41
3894 4289 5.053811 CCGGTGCAGAAACATGTATGTATA 58.946 41.667 0.00 0.00 40.80 1.47
3932 4327 3.559655 CACAACAATCTCACGGTTTCTCA 59.440 43.478 0.00 0.00 0.00 3.27
3984 4385 6.294342 CCATCTCAATTTCTCTCTTTGCACAA 60.294 38.462 0.00 0.00 0.00 3.33
3987 4388 7.719483 TCTCAATTTCTCTCTTTGCACAAAAT 58.281 30.769 0.00 0.00 0.00 1.82
4006 4407 4.365899 AATGCACACATCACATCACATC 57.634 40.909 0.00 0.00 34.62 3.06
4007 4408 2.780714 TGCACACATCACATCACATCA 58.219 42.857 0.00 0.00 0.00 3.07
4008 4409 2.485038 TGCACACATCACATCACATCAC 59.515 45.455 0.00 0.00 0.00 3.06
4009 4410 2.475022 GCACACATCACATCACATCACG 60.475 50.000 0.00 0.00 0.00 4.35
4010 4411 1.733912 ACACATCACATCACATCACGC 59.266 47.619 0.00 0.00 0.00 5.34
4011 4412 1.733360 CACATCACATCACATCACGCA 59.267 47.619 0.00 0.00 0.00 5.24
4012 4413 1.733912 ACATCACATCACATCACGCAC 59.266 47.619 0.00 0.00 0.00 5.34
4013 4414 1.733360 CATCACATCACATCACGCACA 59.267 47.619 0.00 0.00 0.00 4.57
4014 4415 1.147473 TCACATCACATCACGCACAC 58.853 50.000 0.00 0.00 0.00 3.82
4015 4416 0.867086 CACATCACATCACGCACACA 59.133 50.000 0.00 0.00 0.00 3.72
4016 4417 0.867746 ACATCACATCACGCACACAC 59.132 50.000 0.00 0.00 0.00 3.82
4017 4418 0.867086 CATCACATCACGCACACACA 59.133 50.000 0.00 0.00 0.00 3.72
4018 4419 1.136169 CATCACATCACGCACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
4019 4420 1.082561 CACATCACGCACACACAGC 60.083 57.895 0.00 0.00 0.00 4.40
4020 4421 1.523484 ACATCACGCACACACAGCA 60.523 52.632 0.00 0.00 0.00 4.41
4021 4422 1.094650 ACATCACGCACACACAGCAA 61.095 50.000 0.00 0.00 0.00 3.91
4022 4423 0.385098 CATCACGCACACACAGCAAG 60.385 55.000 0.00 0.00 0.00 4.01
4023 4424 2.121564 ATCACGCACACACAGCAAGC 62.122 55.000 0.00 0.00 0.00 4.01
4024 4425 2.823593 ACGCACACACAGCAAGCA 60.824 55.556 0.00 0.00 0.00 3.91
4025 4426 2.352686 CGCACACACAGCAAGCAC 60.353 61.111 0.00 0.00 0.00 4.40
4026 4427 2.800053 GCACACACAGCAAGCACA 59.200 55.556 0.00 0.00 0.00 4.57
4027 4428 1.587088 GCACACACAGCAAGCACAC 60.587 57.895 0.00 0.00 0.00 3.82
4028 4429 1.996786 GCACACACAGCAAGCACACT 61.997 55.000 0.00 0.00 0.00 3.55
4029 4430 0.028505 CACACACAGCAAGCACACTC 59.971 55.000 0.00 0.00 0.00 3.51
4030 4431 0.392863 ACACACAGCAAGCACACTCA 60.393 50.000 0.00 0.00 0.00 3.41
4031 4432 0.734309 CACACAGCAAGCACACTCAA 59.266 50.000 0.00 0.00 0.00 3.02
4032 4433 1.019673 ACACAGCAAGCACACTCAAG 58.980 50.000 0.00 0.00 0.00 3.02
4055 4475 0.108992 CAAGCATGGAAAGCACGCAT 60.109 50.000 0.00 0.00 0.00 4.73
4114 4534 0.447406 GCAAGCACGTGCATCATGTA 59.553 50.000 39.21 0.00 44.29 2.29
4124 4544 1.510480 GCATCATGTAGGAAGCCGGC 61.510 60.000 21.89 21.89 0.00 6.13
4208 4629 4.008933 GTGGTCGTCCAGCTGGCT 62.009 66.667 28.91 0.00 45.24 4.75
4230 4651 3.665675 GAAGATGGCCAGCGACGGT 62.666 63.158 16.75 0.00 0.00 4.83
4247 4668 4.193334 TCGCTCCTCATCACCGCG 62.193 66.667 0.00 0.00 44.63 6.46
4264 4685 4.740822 GACGCCCCTGCCACCAAT 62.741 66.667 0.00 0.00 0.00 3.16
4378 5723 2.511600 GCCATCCGTAGCAGCGTT 60.512 61.111 0.00 0.00 0.00 4.84
4379 5724 2.813179 GCCATCCGTAGCAGCGTTG 61.813 63.158 0.00 0.00 0.00 4.10
4380 5725 2.173669 CCATCCGTAGCAGCGTTGG 61.174 63.158 0.16 0.00 0.00 3.77
4476 6881 0.398664 GGAAGGGGAATCGGGAGAGA 60.399 60.000 0.00 0.00 45.48 3.10
4477 6882 1.497161 GAAGGGGAATCGGGAGAGAA 58.503 55.000 0.00 0.00 45.48 2.87
4478 6883 1.414550 GAAGGGGAATCGGGAGAGAAG 59.585 57.143 0.00 0.00 45.48 2.85
4479 6884 0.399233 AGGGGAATCGGGAGAGAAGG 60.399 60.000 0.00 0.00 45.48 3.46
4480 6885 1.411651 GGGGAATCGGGAGAGAAGGG 61.412 65.000 0.00 0.00 45.48 3.95
4481 6886 1.411651 GGGAATCGGGAGAGAAGGGG 61.412 65.000 0.00 0.00 45.48 4.79
4482 6887 0.691413 GGAATCGGGAGAGAAGGGGT 60.691 60.000 0.00 0.00 45.48 4.95
4483 6888 0.753867 GAATCGGGAGAGAAGGGGTC 59.246 60.000 0.00 0.00 45.48 4.46
4484 6889 0.340208 AATCGGGAGAGAAGGGGTCT 59.660 55.000 0.00 0.00 45.48 3.85
4490 6895 2.896443 GAGAAGGGGTCTCGGCAG 59.104 66.667 0.00 0.00 43.46 4.85
4491 6896 1.682684 GAGAAGGGGTCTCGGCAGA 60.683 63.158 0.00 0.00 43.46 4.26
4492 6897 1.671901 GAGAAGGGGTCTCGGCAGAG 61.672 65.000 7.64 7.64 43.46 3.35
4602 7013 3.791973 TTCAAGTTGCATTTGACGGTT 57.208 38.095 12.24 0.00 34.50 4.44
4680 7091 9.944663 GGTGTCAAAAAGGGAAAAATAAAAATC 57.055 29.630 0.00 0.00 0.00 2.17
4764 7180 2.702748 ACCCCTACCACTCAGAAACTT 58.297 47.619 0.00 0.00 0.00 2.66
4787 7203 2.319025 TCCAATTTTCCACCCCTTCC 57.681 50.000 0.00 0.00 0.00 3.46
4790 7206 1.248101 AATTTTCCACCCCTTCCGCG 61.248 55.000 0.00 0.00 0.00 6.46
4802 7218 2.355363 TCCGCGTGGAAGTCGTTG 60.355 61.111 17.09 0.00 42.85 4.10
4831 7247 7.038017 AGGTCAGAAAGGTTAAAGATCTGATGA 60.038 37.037 0.00 0.00 45.71 2.92
4832 7248 7.772757 GGTCAGAAAGGTTAAAGATCTGATGAT 59.227 37.037 0.00 0.00 45.71 2.45
4833 7249 9.171877 GTCAGAAAGGTTAAAGATCTGATGATT 57.828 33.333 0.00 0.00 45.71 2.57
4834 7250 9.388506 TCAGAAAGGTTAAAGATCTGATGATTC 57.611 33.333 0.00 0.00 41.01 2.52
4835 7251 9.393512 CAGAAAGGTTAAAGATCTGATGATTCT 57.606 33.333 0.00 0.00 39.85 2.40
4836 7252 9.393512 AGAAAGGTTAAAGATCTGATGATTCTG 57.606 33.333 0.00 0.00 32.19 3.02
4837 7253 9.388506 GAAAGGTTAAAGATCTGATGATTCTGA 57.611 33.333 0.00 0.00 34.75 3.27
4838 7254 9.917887 AAAGGTTAAAGATCTGATGATTCTGAT 57.082 29.630 0.00 0.00 41.61 2.90
4854 7270 5.552870 TTCTGATCTAACCCTGCTATTCC 57.447 43.478 0.00 0.00 0.00 3.01
4998 7414 7.373617 TGTAGCCAGGAATCTTTGATATGTA 57.626 36.000 0.00 0.00 0.00 2.29
5028 7444 4.133078 GGATAAATTGAGAGAGCAGGTGG 58.867 47.826 0.00 0.00 0.00 4.61
5053 7469 4.478206 AGCTTAGCTAAGAGTGATGCAA 57.522 40.909 32.88 0.00 36.99 4.08
5055 7471 4.081198 AGCTTAGCTAAGAGTGATGCAACT 60.081 41.667 32.88 15.37 36.99 3.16
5063 7479 1.672356 GTGATGCAACTGCGGTCCT 60.672 57.895 0.00 0.00 45.83 3.85
5112 7528 2.106511 TGGTAGATATGGAAAGGGCAGC 59.893 50.000 0.00 0.00 0.00 5.25
5169 7620 3.118408 AGGTTTTCTTTTGGGGCTGTTTC 60.118 43.478 0.00 0.00 0.00 2.78
5174 7625 2.022240 TTTTGGGGCTGTTTCGGCAC 62.022 55.000 3.03 0.00 38.64 5.01
5185 7636 0.594110 TTTCGGCACCAATCCGTTTC 59.406 50.000 1.22 0.00 46.49 2.78
5186 7637 0.535328 TTCGGCACCAATCCGTTTCA 60.535 50.000 1.22 0.00 46.49 2.69
5187 7638 0.953471 TCGGCACCAATCCGTTTCAG 60.953 55.000 1.22 0.00 46.49 3.02
5199 7650 6.490040 CCAATCCGTTTCAGGGTTATATGAAT 59.510 38.462 0.00 0.00 35.47 2.57
5374 7828 4.653341 TCCCATTTTGTCTGTGTTTGGAAT 59.347 37.500 0.00 0.00 0.00 3.01
5440 7894 4.508065 AGGCTGGGTATGAGGCTT 57.492 55.556 0.00 0.00 43.47 4.35
5673 8133 4.578928 ACAACAGACGAGCAAAGGTAAAAT 59.421 37.500 0.00 0.00 0.00 1.82
5742 8202 7.859325 TTACTTTTCTTCTACACTTGCTTGT 57.141 32.000 0.00 0.00 0.00 3.16
5751 8211 8.148351 TCTTCTACACTTGCTTGTACATTTAGT 58.852 33.333 0.00 0.00 0.00 2.24
5946 8406 1.301293 GCACAAAGAGAGGGAGGGG 59.699 63.158 0.00 0.00 0.00 4.79
5958 8429 0.913205 GGGAGGGGAGAGGAAAGTTC 59.087 60.000 0.00 0.00 0.00 3.01
5960 8431 2.270858 GGAGGGGAGAGGAAAGTTCTT 58.729 52.381 0.00 0.00 0.00 2.52
5972 8443 7.739825 AGAGGAAAGTTCTTATATATGCAGCA 58.260 34.615 0.00 0.00 0.00 4.41
5976 8447 9.455847 GGAAAGTTCTTATATATGCAGCAAAAG 57.544 33.333 0.00 0.00 0.00 2.27
6099 8570 9.434275 TCTTGATCTCTTATACAAGTAATGGGA 57.566 33.333 0.00 0.00 40.07 4.37
6122 8593 3.383505 ACCAGGCTTACAAAAACAGGAAC 59.616 43.478 0.00 0.00 0.00 3.62
6152 8623 8.702438 CCAGTTTATTTGCTACATTTTCAGTTG 58.298 33.333 0.00 0.00 0.00 3.16
6187 8667 4.270245 TGGTTGGAAATTGGAATCTTGC 57.730 40.909 0.00 0.00 0.00 4.01
6195 8675 7.267128 TGGAAATTGGAATCTTGCACAATATC 58.733 34.615 0.00 0.00 33.54 1.63
6244 8724 6.091437 CCTTTCTTCTGCAACTTCATGATTC 58.909 40.000 0.00 0.00 0.00 2.52
6503 8983 9.162764 GATACTGAAACCTTAAGCTTATTGTGA 57.837 33.333 7.08 0.00 0.00 3.58
6741 9264 4.125703 CTGCTGCGATTTCCTATCTTTCT 58.874 43.478 0.00 0.00 0.00 2.52
6869 9393 5.978814 ACAGATAGAGTACCAAACATGGAC 58.021 41.667 1.10 0.00 0.00 4.02
6938 9462 9.465985 GACCTATCTTTCTTAATGTGCTAGTAC 57.534 37.037 3.70 3.70 0.00 2.73
6978 9503 1.134640 TGGCTTGAATCAATGGCATGC 60.135 47.619 9.90 9.90 33.49 4.06
7008 9533 2.107950 TGACCTTTGATTAGTGCCCG 57.892 50.000 0.00 0.00 0.00 6.13
7033 9558 5.012046 CCACACTAGCCCTGAATATGATACA 59.988 44.000 0.00 0.00 0.00 2.29
7184 9714 1.065418 CAAGGAAGCTCAATACGGGGT 60.065 52.381 0.00 0.00 0.00 4.95
7686 10219 6.126507 TGGATTTCTTAGGACTGGCATCATAA 60.127 38.462 0.00 0.00 0.00 1.90
7688 10221 4.322080 TCTTAGGACTGGCATCATAACG 57.678 45.455 0.00 0.00 0.00 3.18
7881 10414 1.424638 CCCAGTCGATACCCTCCAAT 58.575 55.000 0.00 0.00 0.00 3.16
7948 10481 1.200020 GTCCCATTGTTTCTTCTGGCG 59.800 52.381 0.00 0.00 0.00 5.69
8039 10572 5.294356 ACTGCTAAAGTGTGTATTTCGTCA 58.706 37.500 0.00 0.00 37.88 4.35
8290 10823 5.706833 TCGTACCTCTTGTATGTGTCACTTA 59.293 40.000 4.27 0.00 37.64 2.24
8344 10877 6.106003 GGTTTGTCTTTGTGGTTCTTTTGAT 58.894 36.000 0.00 0.00 0.00 2.57
8383 10916 2.486636 CTTGCGGACGAGTGCCAGTA 62.487 60.000 0.00 0.00 0.00 2.74
8403 10936 6.765036 CCAGTATTGCAATTCTCAGTATGTCT 59.235 38.462 18.75 0.00 37.40 3.41
8404 10937 7.928167 CCAGTATTGCAATTCTCAGTATGTCTA 59.072 37.037 18.75 0.00 37.40 2.59
8424 10957 8.201554 TGTCTATAACATTTCTGATGAAGCAC 57.798 34.615 0.00 0.00 30.86 4.40
8425 10958 7.010460 TGTCTATAACATTTCTGATGAAGCACG 59.990 37.037 0.00 0.00 30.86 5.34
8432 10965 0.842613 CTGATGAAGCACGATCGTCG 59.157 55.000 19.84 14.88 46.93 5.12
8513 11046 4.201920 CGAGGAGTAGATCGTCATTTCACA 60.202 45.833 0.00 0.00 41.90 3.58
8514 11047 5.000012 AGGAGTAGATCGTCATTTCACAC 58.000 43.478 0.00 0.00 0.00 3.82
8515 11048 4.707448 AGGAGTAGATCGTCATTTCACACT 59.293 41.667 0.00 0.00 0.00 3.55
8534 11067 5.995282 CACACTAAACCACCTCAAGAACATA 59.005 40.000 0.00 0.00 0.00 2.29
8591 11124 2.281276 GCGTTTTGGAGGACGGGT 60.281 61.111 0.00 0.00 39.52 5.28
8620 11154 9.434420 CATGGAGCCTGTTATTTTAATTCAAAA 57.566 29.630 0.00 0.00 40.34 2.44
8778 11319 6.237901 AGAAGGCACAAAGTTTTTCCTTTTT 58.762 32.000 11.80 4.51 34.40 1.94
8842 11383 6.931281 ACACATGTATACATTATGTCTCTGGC 59.069 38.462 19.97 0.00 33.06 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.919416 TCCCTTCAGAAATATATGATGTTTTGA 57.081 29.630 0.00 0.00 0.00 2.69
5 6 9.359653 CCTCCCTTCAGAAATATATGATGTTTT 57.640 33.333 0.00 0.00 0.00 2.43
6 7 7.946776 CCCTCCCTTCAGAAATATATGATGTTT 59.053 37.037 0.00 0.00 0.00 2.83
7 8 7.295672 TCCCTCCCTTCAGAAATATATGATGTT 59.704 37.037 0.00 0.00 0.00 2.71
8 9 6.794493 TCCCTCCCTTCAGAAATATATGATGT 59.206 38.462 0.00 0.00 0.00 3.06
9 10 7.037730 ACTCCCTCCCTTCAGAAATATATGATG 60.038 40.741 0.00 0.00 0.00 3.07
10 11 7.028131 ACTCCCTCCCTTCAGAAATATATGAT 58.972 38.462 0.00 0.00 0.00 2.45
11 12 6.393897 ACTCCCTCCCTTCAGAAATATATGA 58.606 40.000 0.00 0.00 0.00 2.15
12 13 6.694445 ACTCCCTCCCTTCAGAAATATATG 57.306 41.667 0.00 0.00 0.00 1.78
13 14 7.794683 TGTTACTCCCTCCCTTCAGAAATATAT 59.205 37.037 0.00 0.00 0.00 0.86
14 15 7.136885 TGTTACTCCCTCCCTTCAGAAATATA 58.863 38.462 0.00 0.00 0.00 0.86
15 16 5.970640 TGTTACTCCCTCCCTTCAGAAATAT 59.029 40.000 0.00 0.00 0.00 1.28
16 17 5.347124 TGTTACTCCCTCCCTTCAGAAATA 58.653 41.667 0.00 0.00 0.00 1.40
17 18 4.175962 TGTTACTCCCTCCCTTCAGAAAT 58.824 43.478 0.00 0.00 0.00 2.17
18 19 3.593942 TGTTACTCCCTCCCTTCAGAAA 58.406 45.455 0.00 0.00 0.00 2.52
19 20 3.269592 TGTTACTCCCTCCCTTCAGAA 57.730 47.619 0.00 0.00 0.00 3.02
20 21 3.491766 ATGTTACTCCCTCCCTTCAGA 57.508 47.619 0.00 0.00 0.00 3.27
21 22 4.576330 AAATGTTACTCCCTCCCTTCAG 57.424 45.455 0.00 0.00 0.00 3.02
22 23 5.333566 AAAAATGTTACTCCCTCCCTTCA 57.666 39.130 0.00 0.00 0.00 3.02
66 67 2.418669 ACTCCCTCCCAGTCTCAAAAA 58.581 47.619 0.00 0.00 0.00 1.94
67 68 2.118403 ACTCCCTCCCAGTCTCAAAA 57.882 50.000 0.00 0.00 0.00 2.44
68 69 2.904434 GTTACTCCCTCCCAGTCTCAAA 59.096 50.000 0.00 0.00 0.00 2.69
69 70 2.158219 TGTTACTCCCTCCCAGTCTCAA 60.158 50.000 0.00 0.00 0.00 3.02
70 71 1.431633 TGTTACTCCCTCCCAGTCTCA 59.568 52.381 0.00 0.00 0.00 3.27
71 72 2.233305 TGTTACTCCCTCCCAGTCTC 57.767 55.000 0.00 0.00 0.00 3.36
72 73 2.950990 ATGTTACTCCCTCCCAGTCT 57.049 50.000 0.00 0.00 0.00 3.24
73 74 4.302559 AAAATGTTACTCCCTCCCAGTC 57.697 45.455 0.00 0.00 0.00 3.51
74 75 5.073965 TGTTAAAATGTTACTCCCTCCCAGT 59.926 40.000 0.00 0.00 0.00 4.00
75 76 5.566469 TGTTAAAATGTTACTCCCTCCCAG 58.434 41.667 0.00 0.00 0.00 4.45
76 77 5.586155 TGTTAAAATGTTACTCCCTCCCA 57.414 39.130 0.00 0.00 0.00 4.37
77 78 6.008331 AGTTGTTAAAATGTTACTCCCTCCC 58.992 40.000 0.00 0.00 0.00 4.30
111 112 2.167398 TTGTAGTGACAGCCGCTCCC 62.167 60.000 0.00 0.00 36.76 4.30
116 117 3.896648 AACAAATTGTAGTGACAGCCG 57.103 42.857 0.00 0.00 36.76 5.52
161 162 3.861276 ATAAAGGTAAAACGGCTTGCC 57.139 42.857 0.75 0.75 0.00 4.52
162 163 6.126568 TGATATAAAGGTAAAACGGCTTGC 57.873 37.500 0.00 0.00 0.00 4.01
163 164 7.531716 TGTTGATATAAAGGTAAAACGGCTTG 58.468 34.615 0.00 0.00 0.00 4.01
230 400 4.036144 TGCAAACATGTCAAAATCTCGACA 59.964 37.500 0.00 0.00 45.62 4.35
231 401 4.536065 TGCAAACATGTCAAAATCTCGAC 58.464 39.130 0.00 0.00 0.00 4.20
235 405 4.695396 TGCTTGCAAACATGTCAAAATCT 58.305 34.783 0.00 0.00 0.00 2.40
246 416 1.608109 ACGATGTGATGCTTGCAAACA 59.392 42.857 4.77 4.77 0.00 2.83
272 442 6.805271 CAGAAAATGCGAGAAAATCTTCACAT 59.195 34.615 0.00 0.00 33.64 3.21
274 444 5.060200 GCAGAAAATGCGAGAAAATCTTCAC 59.940 40.000 0.00 0.00 46.99 3.18
350 520 4.492570 CGCTCGGTAATAAGTTCAAGCAAG 60.493 45.833 0.00 0.00 0.00 4.01
390 560 6.567050 CAAAGTCAAGATGATTTATGTGGGG 58.433 40.000 0.00 0.00 0.00 4.96
392 562 6.860080 AGCAAAGTCAAGATGATTTATGTGG 58.140 36.000 0.00 0.00 0.00 4.17
473 649 4.084287 TGTCTATGAGAGGGTTAACGTGT 58.916 43.478 0.00 0.00 0.00 4.49
477 653 5.934402 TCCTTGTCTATGAGAGGGTTAAC 57.066 43.478 0.00 0.00 0.00 2.01
532 710 2.443416 TGCTTGCATGCTCTCATTTCT 58.557 42.857 23.31 0.00 0.00 2.52
533 711 2.933495 TGCTTGCATGCTCTCATTTC 57.067 45.000 23.31 0.27 0.00 2.17
536 714 2.353406 GGTTTTGCTTGCATGCTCTCAT 60.353 45.455 23.31 0.00 0.00 2.90
537 715 1.000060 GGTTTTGCTTGCATGCTCTCA 60.000 47.619 23.31 10.51 0.00 3.27
590 772 4.353437 AGTCAACGGGTCGACGCC 62.353 66.667 24.89 17.97 37.23 5.68
591 773 3.103911 CAGTCAACGGGTCGACGC 61.104 66.667 21.72 21.72 37.23 5.19
592 774 2.014554 CACAGTCAACGGGTCGACG 61.015 63.158 9.92 1.01 37.23 5.12
593 775 2.308039 GCACAGTCAACGGGTCGAC 61.308 63.158 7.13 7.13 0.00 4.20
594 776 2.028484 GCACAGTCAACGGGTCGA 59.972 61.111 0.00 0.00 0.00 4.20
595 777 2.279851 TGCACAGTCAACGGGTCG 60.280 61.111 0.00 0.00 0.00 4.79
596 778 2.607892 GCTGCACAGTCAACGGGTC 61.608 63.158 0.00 0.00 0.00 4.46
597 779 2.591715 GCTGCACAGTCAACGGGT 60.592 61.111 0.00 0.00 0.00 5.28
598 780 2.281070 AGCTGCACAGTCAACGGG 60.281 61.111 1.02 0.00 0.00 5.28
599 781 1.563435 CTCAGCTGCACAGTCAACGG 61.563 60.000 9.47 0.00 0.00 4.44
600 782 1.563435 CCTCAGCTGCACAGTCAACG 61.563 60.000 9.47 0.00 0.00 4.10
601 783 0.533755 ACCTCAGCTGCACAGTCAAC 60.534 55.000 9.47 0.00 0.00 3.18
602 784 0.181114 AACCTCAGCTGCACAGTCAA 59.819 50.000 9.47 0.00 0.00 3.18
603 785 0.533531 CAACCTCAGCTGCACAGTCA 60.534 55.000 9.47 0.00 0.00 3.41
604 786 1.849976 GCAACCTCAGCTGCACAGTC 61.850 60.000 9.47 0.00 38.48 3.51
605 787 1.895707 GCAACCTCAGCTGCACAGT 60.896 57.895 9.47 0.02 38.48 3.55
606 788 1.600076 AGCAACCTCAGCTGCACAG 60.600 57.895 9.47 0.70 41.61 3.66
607 789 2.512397 AGCAACCTCAGCTGCACA 59.488 55.556 9.47 0.00 41.61 4.57
612 794 2.033757 CTGGCAGCAACCTCAGCT 59.966 61.111 0.00 0.00 44.62 4.24
613 795 3.745803 GCTGGCAGCAACCTCAGC 61.746 66.667 33.33 4.00 44.34 4.26
614 796 3.060615 GGCTGGCAGCAACCTCAG 61.061 66.667 37.49 0.50 44.75 3.35
615 797 4.666253 GGGCTGGCAGCAACCTCA 62.666 66.667 37.49 0.00 44.75 3.86
616 798 4.666253 TGGGCTGGCAGCAACCTC 62.666 66.667 37.49 21.25 44.75 3.85
617 799 4.982701 GTGGGCTGGCAGCAACCT 62.983 66.667 37.49 0.00 44.75 3.50
626 808 4.760047 CGAACTCGGGTGGGCTGG 62.760 72.222 0.00 0.00 35.37 4.85
627 809 3.649277 CTCGAACTCGGGTGGGCTG 62.649 68.421 0.00 0.00 40.29 4.85
628 810 3.382832 CTCGAACTCGGGTGGGCT 61.383 66.667 0.00 0.00 40.29 5.19
634 816 3.823330 CCGGGACTCGAACTCGGG 61.823 72.222 18.93 0.00 46.21 5.14
636 818 3.744719 TGCCGGGACTCGAACTCG 61.745 66.667 2.18 4.83 42.43 4.18
637 819 2.126031 GTGCCGGGACTCGAACTC 60.126 66.667 20.19 0.00 42.43 3.01
638 820 4.052229 CGTGCCGGGACTCGAACT 62.052 66.667 24.50 0.00 42.43 3.01
661 843 2.665185 AAACTCCGTGAGCACCGC 60.665 61.111 1.36 0.00 32.04 5.68
662 844 1.006102 AGAAACTCCGTGAGCACCG 60.006 57.895 1.36 0.00 32.04 4.94
663 845 0.670854 GGAGAAACTCCGTGAGCACC 60.671 60.000 1.97 0.00 41.08 5.01
664 846 2.828933 GGAGAAACTCCGTGAGCAC 58.171 57.895 1.97 0.00 41.08 4.40
673 855 6.817140 TCGGCTTTTCTTTATAGGAGAAACTC 59.183 38.462 10.98 0.00 41.42 3.01
674 856 6.594547 GTCGGCTTTTCTTTATAGGAGAAACT 59.405 38.462 10.98 0.00 41.42 2.66
675 857 6.455246 CGTCGGCTTTTCTTTATAGGAGAAAC 60.455 42.308 10.98 4.09 41.42 2.78
676 858 5.579511 CGTCGGCTTTTCTTTATAGGAGAAA 59.420 40.000 8.49 8.49 40.36 2.52
677 859 5.105635 TCGTCGGCTTTTCTTTATAGGAGAA 60.106 40.000 0.00 0.00 0.00 2.87
678 860 4.400251 TCGTCGGCTTTTCTTTATAGGAGA 59.600 41.667 0.00 0.00 0.00 3.71
679 861 4.679662 TCGTCGGCTTTTCTTTATAGGAG 58.320 43.478 0.00 0.00 0.00 3.69
680 862 4.441079 CCTCGTCGGCTTTTCTTTATAGGA 60.441 45.833 0.00 0.00 0.00 2.94
681 863 3.802685 CCTCGTCGGCTTTTCTTTATAGG 59.197 47.826 0.00 0.00 0.00 2.57
682 864 3.802685 CCCTCGTCGGCTTTTCTTTATAG 59.197 47.826 0.00 0.00 0.00 1.31
683 865 3.196254 ACCCTCGTCGGCTTTTCTTTATA 59.804 43.478 0.00 0.00 0.00 0.98
684 866 2.027469 ACCCTCGTCGGCTTTTCTTTAT 60.027 45.455 0.00 0.00 0.00 1.40
685 867 1.345415 ACCCTCGTCGGCTTTTCTTTA 59.655 47.619 0.00 0.00 0.00 1.85
686 868 0.108019 ACCCTCGTCGGCTTTTCTTT 59.892 50.000 0.00 0.00 0.00 2.52
687 869 0.108019 AACCCTCGTCGGCTTTTCTT 59.892 50.000 0.00 0.00 0.00 2.52
688 870 0.971386 TAACCCTCGTCGGCTTTTCT 59.029 50.000 0.00 0.00 0.00 2.52
689 871 1.356938 CTAACCCTCGTCGGCTTTTC 58.643 55.000 0.00 0.00 0.00 2.29
690 872 0.672711 GCTAACCCTCGTCGGCTTTT 60.673 55.000 0.00 0.00 0.00 2.27
691 873 1.079336 GCTAACCCTCGTCGGCTTT 60.079 57.895 0.00 0.00 0.00 3.51
692 874 2.577593 GCTAACCCTCGTCGGCTT 59.422 61.111 0.00 0.00 0.00 4.35
693 875 3.459063 GGCTAACCCTCGTCGGCT 61.459 66.667 0.00 0.00 0.00 5.52
703 885 0.611062 GACCAACCCAAGGGCTAACC 60.611 60.000 4.70 0.00 39.32 2.85
704 886 0.404426 AGACCAACCCAAGGGCTAAC 59.596 55.000 4.70 0.00 44.68 2.34
705 887 2.877150 AGACCAACCCAAGGGCTAA 58.123 52.632 4.70 0.00 44.68 3.09
706 888 4.681624 AGACCAACCCAAGGGCTA 57.318 55.556 4.70 0.00 44.68 3.93
708 890 0.251787 AATGAGACCAACCCAAGGGC 60.252 55.000 4.70 0.00 39.32 5.19
709 891 2.309136 AAATGAGACCAACCCAAGGG 57.691 50.000 2.91 2.91 42.03 3.95
730 912 4.105697 TCTCAGCTCCCCCTTCTTTAAAAA 59.894 41.667 0.00 0.00 0.00 1.94
731 913 3.655777 TCTCAGCTCCCCCTTCTTTAAAA 59.344 43.478 0.00 0.00 0.00 1.52
732 914 3.256704 TCTCAGCTCCCCCTTCTTTAAA 58.743 45.455 0.00 0.00 0.00 1.52
733 915 2.915869 TCTCAGCTCCCCCTTCTTTAA 58.084 47.619 0.00 0.00 0.00 1.52
734 916 2.642171 TCTCAGCTCCCCCTTCTTTA 57.358 50.000 0.00 0.00 0.00 1.85
735 917 1.747444 TTCTCAGCTCCCCCTTCTTT 58.253 50.000 0.00 0.00 0.00 2.52
736 918 1.747444 TTTCTCAGCTCCCCCTTCTT 58.253 50.000 0.00 0.00 0.00 2.52
737 919 1.747444 TTTTCTCAGCTCCCCCTTCT 58.253 50.000 0.00 0.00 0.00 2.85
738 920 2.586648 TTTTTCTCAGCTCCCCCTTC 57.413 50.000 0.00 0.00 0.00 3.46
1396 1633 1.153862 GACAGAGAGCACAGCGGAG 60.154 63.158 0.00 0.00 0.00 4.63
1476 1713 2.391389 GCGAGAAGTTTCAGCCGGG 61.391 63.158 2.18 0.00 0.00 5.73
1637 1874 2.164422 GGATAAAGCAGACTTGGGCAAC 59.836 50.000 0.00 0.00 35.85 4.17
1879 2117 8.499967 GTCAAGAAAAACTAATCTTCTCCAGAC 58.500 37.037 0.00 0.00 33.73 3.51
1892 2130 8.573035 ACAAAGTTCAAGTGTCAAGAAAAACTA 58.427 29.630 0.00 0.00 0.00 2.24
1899 2137 4.458989 AGCAACAAAGTTCAAGTGTCAAGA 59.541 37.500 0.00 0.00 0.00 3.02
1900 2138 4.737054 AGCAACAAAGTTCAAGTGTCAAG 58.263 39.130 0.00 0.00 0.00 3.02
1942 2180 2.482336 TCCCATGATCGAAAAACACACG 59.518 45.455 0.00 0.00 0.00 4.49
1944 2182 4.078537 ACATCCCATGATCGAAAAACACA 58.921 39.130 0.00 0.00 0.00 3.72
2219 2463 3.493002 CCAGAGCAAAACCTCAAAATGCA 60.493 43.478 0.00 0.00 39.42 3.96
2221 2465 4.589216 TCCAGAGCAAAACCTCAAAATG 57.411 40.909 0.00 0.00 34.26 2.32
2349 2595 6.381707 AGGAAAGTATCTCCTAGGACAAGTTC 59.618 42.308 7.62 6.95 41.73 3.01
2352 2598 9.016438 GTATAGGAAAGTATCTCCTAGGACAAG 57.984 40.741 7.62 0.00 46.34 3.16
2366 2612 6.272324 CAGATTCCCCATGGTATAGGAAAGTA 59.728 42.308 20.11 2.59 41.53 2.24
2428 2675 8.706322 AAAACAATCAATCCCTAGTAACAAGT 57.294 30.769 0.00 0.00 0.00 3.16
2544 2791 3.009301 ACGCCAGTGTAATATCGTAGC 57.991 47.619 0.00 0.00 0.00 3.58
2550 2800 8.445275 TTCATATGAAAACGCCAGTGTAATAT 57.555 30.769 15.82 0.00 0.00 1.28
2824 3076 3.270877 CAAGTTACCCAGGCAGATACAC 58.729 50.000 0.00 0.00 0.00 2.90
2924 3176 1.271543 TGGTTCATCCACTGCCAAGAG 60.272 52.381 0.00 0.00 41.93 2.85
2955 3207 1.405821 ACTAGACCAGCGTAGACATGC 59.594 52.381 0.00 0.00 36.90 4.06
3026 3278 5.694231 TTTCACAGATCACCAACAATGAG 57.306 39.130 0.00 0.00 0.00 2.90
3048 3300 3.689649 GCGACAATGGTCAGTAGGATTTT 59.310 43.478 0.13 0.00 44.54 1.82
3049 3301 3.055094 AGCGACAATGGTCAGTAGGATTT 60.055 43.478 0.13 0.00 44.54 2.17
3050 3302 2.501723 AGCGACAATGGTCAGTAGGATT 59.498 45.455 0.13 0.00 44.54 3.01
3051 3303 2.111384 AGCGACAATGGTCAGTAGGAT 58.889 47.619 0.13 0.00 44.54 3.24
3053 3305 3.735237 ATAGCGACAATGGTCAGTAGG 57.265 47.619 0.13 0.00 44.54 3.18
3054 3306 6.346919 GCAAATATAGCGACAATGGTCAGTAG 60.347 42.308 0.13 0.00 44.54 2.57
3365 3647 2.031420 GGATGATGACATGCATTCCACG 60.031 50.000 0.00 0.00 42.90 4.94
3387 3669 4.872664 ACTGAATCTACGGCTAGCATAAC 58.127 43.478 18.24 0.00 0.00 1.89
3404 3686 4.929819 TTGTCTGCACTACTGTACTGAA 57.070 40.909 6.77 0.00 0.00 3.02
3405 3687 4.929819 TTTGTCTGCACTACTGTACTGA 57.070 40.909 6.77 0.00 0.00 3.41
3460 3812 4.022849 AGAGCAATTTGGAGCAGTAACAAC 60.023 41.667 0.00 0.00 0.00 3.32
3463 3815 3.503748 ACAGAGCAATTTGGAGCAGTAAC 59.496 43.478 0.00 0.00 0.00 2.50
3503 3855 2.483889 GGTCTAACTGTGCCATAGCTCC 60.484 54.545 0.00 0.00 40.80 4.70
3513 3865 3.258372 TCAAGCAGTAGGGTCTAACTGTG 59.742 47.826 4.57 0.00 44.03 3.66
3520 3872 2.706190 ACAGTTTCAAGCAGTAGGGTCT 59.294 45.455 0.00 0.00 0.00 3.85
3524 3876 4.632153 ACACTACAGTTTCAAGCAGTAGG 58.368 43.478 8.38 1.39 37.17 3.18
3526 3878 6.988522 TCATACACTACAGTTTCAAGCAGTA 58.011 36.000 0.00 0.00 0.00 2.74
3527 3879 5.853936 TCATACACTACAGTTTCAAGCAGT 58.146 37.500 0.00 0.00 0.00 4.40
3530 3885 7.133891 ACAATCATACACTACAGTTTCAAGC 57.866 36.000 0.00 0.00 0.00 4.01
3554 3909 9.574516 GGCCAAATAAGGAATTCTCTCTTTATA 57.425 33.333 5.23 0.00 29.99 0.98
3757 4115 0.162507 CGTTGCTTCTGACTTGCGAG 59.837 55.000 0.00 0.00 0.00 5.03
3758 4116 1.221466 CCGTTGCTTCTGACTTGCGA 61.221 55.000 0.00 0.00 0.00 5.10
3768 4126 4.025401 CACCGCCACCGTTGCTTC 62.025 66.667 0.00 0.00 0.00 3.86
3873 4264 6.038161 TGCTTATACATACATGTTTCTGCACC 59.962 38.462 2.30 0.00 41.97 5.01
3879 4270 9.093970 TGTGTACTGCTTATACATACATGTTTC 57.906 33.333 2.30 0.00 41.97 2.78
3894 4289 0.180171 TGTGCCTGTGTGTACTGCTT 59.820 50.000 0.00 0.00 0.00 3.91
3932 4327 1.431488 CTGTGTGCTGTGCGTGAAGT 61.431 55.000 0.00 0.00 0.00 3.01
3984 4385 4.218852 TGATGTGATGTGATGTGTGCATTT 59.781 37.500 0.00 0.00 35.07 2.32
3987 4388 2.485038 GTGATGTGATGTGATGTGTGCA 59.515 45.455 0.00 0.00 0.00 4.57
4006 4407 2.352686 GCTTGCTGTGTGTGCGTG 60.353 61.111 0.00 0.00 0.00 5.34
4007 4408 2.823593 TGCTTGCTGTGTGTGCGT 60.824 55.556 0.00 0.00 0.00 5.24
4008 4409 2.352686 GTGCTTGCTGTGTGTGCG 60.353 61.111 0.00 0.00 0.00 5.34
4009 4410 1.587088 GTGTGCTTGCTGTGTGTGC 60.587 57.895 0.00 0.00 0.00 4.57
4010 4411 0.028505 GAGTGTGCTTGCTGTGTGTG 59.971 55.000 0.00 0.00 0.00 3.82
4011 4412 0.392863 TGAGTGTGCTTGCTGTGTGT 60.393 50.000 0.00 0.00 0.00 3.72
4012 4413 0.734309 TTGAGTGTGCTTGCTGTGTG 59.266 50.000 0.00 0.00 0.00 3.82
4013 4414 1.019673 CTTGAGTGTGCTTGCTGTGT 58.980 50.000 0.00 0.00 0.00 3.72
4014 4415 1.003116 GTCTTGAGTGTGCTTGCTGTG 60.003 52.381 0.00 0.00 0.00 3.66
4015 4416 1.134280 AGTCTTGAGTGTGCTTGCTGT 60.134 47.619 0.00 0.00 0.00 4.40
4016 4417 1.530293 GAGTCTTGAGTGTGCTTGCTG 59.470 52.381 0.00 0.00 0.00 4.41
4017 4418 1.139654 TGAGTCTTGAGTGTGCTTGCT 59.860 47.619 0.00 0.00 0.00 3.91
4018 4419 1.586422 TGAGTCTTGAGTGTGCTTGC 58.414 50.000 0.00 0.00 0.00 4.01
4019 4420 2.032204 GCTTGAGTCTTGAGTGTGCTTG 60.032 50.000 0.00 0.00 0.00 4.01
4020 4421 2.216898 GCTTGAGTCTTGAGTGTGCTT 58.783 47.619 0.00 0.00 0.00 3.91
4021 4422 1.139654 TGCTTGAGTCTTGAGTGTGCT 59.860 47.619 0.00 0.00 0.00 4.40
4022 4423 1.586422 TGCTTGAGTCTTGAGTGTGC 58.414 50.000 0.00 0.00 0.00 4.57
4023 4424 2.483106 CCATGCTTGAGTCTTGAGTGTG 59.517 50.000 0.22 0.00 0.00 3.82
4024 4425 2.369860 TCCATGCTTGAGTCTTGAGTGT 59.630 45.455 0.22 0.00 0.00 3.55
4025 4426 3.049708 TCCATGCTTGAGTCTTGAGTG 57.950 47.619 0.22 0.00 0.00 3.51
4026 4427 3.777106 TTCCATGCTTGAGTCTTGAGT 57.223 42.857 0.22 0.00 0.00 3.41
4027 4428 3.119919 GCTTTCCATGCTTGAGTCTTGAG 60.120 47.826 0.22 0.00 0.00 3.02
4028 4429 2.816087 GCTTTCCATGCTTGAGTCTTGA 59.184 45.455 0.22 0.00 0.00 3.02
4029 4430 2.555325 TGCTTTCCATGCTTGAGTCTTG 59.445 45.455 0.22 0.00 0.00 3.02
4030 4431 2.555757 GTGCTTTCCATGCTTGAGTCTT 59.444 45.455 0.22 0.00 0.00 3.01
4031 4432 2.157738 GTGCTTTCCATGCTTGAGTCT 58.842 47.619 0.22 0.00 0.00 3.24
4032 4433 1.135859 CGTGCTTTCCATGCTTGAGTC 60.136 52.381 0.22 0.00 0.00 3.36
4055 4475 2.925706 TAGCTGGGTTGCCGTGGA 60.926 61.111 0.00 0.00 0.00 4.02
4104 4524 0.179048 CCGGCTTCCTACATGATGCA 60.179 55.000 0.00 0.00 37.20 3.96
4124 4544 2.743928 GCCCGAGTGAGTGCTTGG 60.744 66.667 0.00 0.00 39.28 3.61
4213 4634 3.665675 GACCGTCGCTGGCCATCTT 62.666 63.158 5.51 0.00 0.00 2.40
4247 4668 4.740822 ATTGGTGGCAGGGGCGTC 62.741 66.667 0.00 0.00 42.47 5.19
4476 6881 1.229209 TTCTCTGCCGAGACCCCTT 60.229 57.895 7.42 0.00 45.61 3.95
4477 6882 1.684049 CTTCTCTGCCGAGACCCCT 60.684 63.158 7.42 0.00 45.61 4.79
4478 6883 1.985116 ACTTCTCTGCCGAGACCCC 60.985 63.158 7.42 0.00 45.61 4.95
4479 6884 1.216710 CACTTCTCTGCCGAGACCC 59.783 63.158 7.42 0.00 45.61 4.46
4480 6885 0.603569 TTCACTTCTCTGCCGAGACC 59.396 55.000 7.42 0.00 45.61 3.85
4481 6886 2.535331 GATTCACTTCTCTGCCGAGAC 58.465 52.381 7.42 0.00 45.61 3.36
4482 6887 1.133216 CGATTCACTTCTCTGCCGAGA 59.867 52.381 3.40 3.40 44.32 4.04
4483 6888 1.554392 CGATTCACTTCTCTGCCGAG 58.446 55.000 0.00 0.00 38.67 4.63
4484 6889 0.173481 CCGATTCACTTCTCTGCCGA 59.827 55.000 0.00 0.00 0.00 5.54
4485 6890 0.807667 CCCGATTCACTTCTCTGCCG 60.808 60.000 0.00 0.00 0.00 5.69
4486 6891 0.537188 TCCCGATTCACTTCTCTGCC 59.463 55.000 0.00 0.00 0.00 4.85
4487 6892 1.478510 TCTCCCGATTCACTTCTCTGC 59.521 52.381 0.00 0.00 0.00 4.26
4488 6893 2.100584 CCTCTCCCGATTCACTTCTCTG 59.899 54.545 0.00 0.00 0.00 3.35
4489 6894 2.024846 TCCTCTCCCGATTCACTTCTCT 60.025 50.000 0.00 0.00 0.00 3.10
4490 6895 2.379972 TCCTCTCCCGATTCACTTCTC 58.620 52.381 0.00 0.00 0.00 2.87
4491 6896 2.534042 TCCTCTCCCGATTCACTTCT 57.466 50.000 0.00 0.00 0.00 2.85
4492 6897 2.432510 ACATCCTCTCCCGATTCACTTC 59.567 50.000 0.00 0.00 0.00 3.01
4602 7013 4.966965 TCCGTCACTTTTTGCTGTTAAA 57.033 36.364 0.00 0.00 0.00 1.52
4680 7091 1.389555 GTTCCCTATTTGGCCCGAAG 58.610 55.000 0.00 0.00 0.00 3.79
4681 7092 0.033894 GGTTCCCTATTTGGCCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
4683 7094 0.751643 CTGGTTCCCTATTTGGCCCG 60.752 60.000 0.00 0.00 0.00 6.13
4764 7180 1.721691 AGGGGTGGAAAATTGGATGGA 59.278 47.619 0.00 0.00 0.00 3.41
4787 7203 1.876453 CTGTCAACGACTTCCACGCG 61.876 60.000 3.53 3.53 33.15 6.01
4790 7206 1.202486 TGACCTGTCAACGACTTCCAC 60.202 52.381 0.00 0.00 36.53 4.02
4799 7215 5.820947 TCTTTAACCTTTCTGACCTGTCAAC 59.179 40.000 1.14 0.00 39.39 3.18
4802 7218 6.370166 CAGATCTTTAACCTTTCTGACCTGTC 59.630 42.308 0.00 0.00 36.72 3.51
4831 7247 5.013599 GGGAATAGCAGGGTTAGATCAGAAT 59.986 44.000 0.00 0.00 0.00 2.40
4832 7248 4.348168 GGGAATAGCAGGGTTAGATCAGAA 59.652 45.833 0.00 0.00 0.00 3.02
4833 7249 3.904339 GGGAATAGCAGGGTTAGATCAGA 59.096 47.826 0.00 0.00 0.00 3.27
4834 7250 3.648067 TGGGAATAGCAGGGTTAGATCAG 59.352 47.826 0.00 0.00 0.00 2.90
4835 7251 3.664320 TGGGAATAGCAGGGTTAGATCA 58.336 45.455 0.00 0.00 0.00 2.92
4836 7252 4.917906 ATGGGAATAGCAGGGTTAGATC 57.082 45.455 0.00 0.00 0.00 2.75
4837 7253 5.388654 CAAATGGGAATAGCAGGGTTAGAT 58.611 41.667 0.00 0.00 0.00 1.98
4838 7254 4.792068 CAAATGGGAATAGCAGGGTTAGA 58.208 43.478 0.00 0.00 0.00 2.10
4839 7255 3.319122 GCAAATGGGAATAGCAGGGTTAG 59.681 47.826 0.00 0.00 0.00 2.34
4840 7256 3.295973 GCAAATGGGAATAGCAGGGTTA 58.704 45.455 0.00 0.00 0.00 2.85
4843 7259 1.779221 TGCAAATGGGAATAGCAGGG 58.221 50.000 0.00 0.00 0.00 4.45
4854 7270 6.239120 CCTTCATATTCTAGGGTTGCAAATGG 60.239 42.308 0.00 0.00 0.00 3.16
4998 7414 6.599244 TGCTCTCTCAATTTATCCAAAATCGT 59.401 34.615 0.00 0.00 0.00 3.73
5053 7469 9.436957 CTAAAATATCATAATTAGGACCGCAGT 57.563 33.333 1.21 0.00 0.00 4.40
5055 7471 9.431887 GTCTAAAATATCATAATTAGGACCGCA 57.568 33.333 1.21 0.00 0.00 5.69
5112 7528 5.615925 AGAACTACTACTAAGCCATTGGG 57.384 43.478 4.53 0.00 37.18 4.12
5174 7625 5.373222 TCATATAACCCTGAAACGGATTGG 58.627 41.667 0.00 0.00 0.00 3.16
5209 7660 9.175312 ACGTCTTTCTGAAGTAGATATAGACAA 57.825 33.333 12.44 0.00 37.93 3.18
5233 7684 5.291971 TGATCATGATAAGGATGTGTCACG 58.708 41.667 8.54 0.00 0.00 4.35
5268 7719 6.372937 TGTTCGGTGAATATGCAAAGATGTTA 59.627 34.615 0.00 0.00 0.00 2.41
5374 7828 1.383799 CAATGGACTTGGGGCCTGA 59.616 57.895 0.84 0.00 0.00 3.86
5488 7942 7.961827 GCACAATGAGAAACAAAACAAAATTCA 59.038 29.630 0.00 0.00 0.00 2.57
5673 8133 3.374042 TCAACTGGTCCCACAAGAAAA 57.626 42.857 0.00 0.00 0.00 2.29
5751 8211 1.064314 ACACCCACAGTTGGTAAGCAA 60.064 47.619 0.00 0.00 42.10 3.91
5946 8406 7.875041 TGCTGCATATATAAGAACTTTCCTCTC 59.125 37.037 0.00 0.00 0.00 3.20
5999 8470 6.263344 CAATTTCTGCACTCATCTATGGTTG 58.737 40.000 0.00 0.00 0.00 3.77
6099 8570 3.637769 TCCTGTTTTTGTAAGCCTGGTT 58.362 40.909 0.00 0.00 0.00 3.67
6147 8618 9.703892 TCCAACCATTATATTTTTGTTCAACTG 57.296 29.630 0.00 0.00 0.00 3.16
6187 8667 9.955208 ACTAATACAAATGTGCATGATATTGTG 57.045 29.630 0.00 0.00 33.48 3.33
6195 8675 9.248291 GGGAAATAACTAATACAAATGTGCATG 57.752 33.333 0.00 0.00 0.00 4.06
6244 8724 5.305585 AGGCATGTCAGGGTATATTTTACG 58.694 41.667 0.00 0.00 0.00 3.18
6693 9213 7.945033 TCAAAACAATGCCTTTTCTGTTATC 57.055 32.000 0.00 0.00 31.90 1.75
6695 9215 7.277539 CAGTTCAAAACAATGCCTTTTCTGTTA 59.722 33.333 0.00 0.00 31.90 2.41
6869 9393 7.905604 TCTTGTAATGGTTCTGATGTAGTTG 57.094 36.000 0.00 0.00 0.00 3.16
6938 9462 4.559153 CCATTTTGGACCTTGCTTAACAG 58.441 43.478 0.00 0.00 40.96 3.16
6978 9503 8.986847 CACTAATCAAAGGTCATAGAGCATTAG 58.013 37.037 10.13 10.13 33.06 1.73
7008 9533 2.104792 TCATATTCAGGGCTAGTGTGGC 59.895 50.000 0.00 0.00 0.00 5.01
7033 9558 7.038587 TGAGAGTTATATACCACAACACAAGGT 60.039 37.037 0.00 0.00 39.41 3.50
7184 9714 9.847224 GAATTAGGGGATAGTTCAGAATTAACA 57.153 33.333 0.00 0.00 31.99 2.41
7686 10219 5.465935 ACGAATTAACAAAAATCATGCCGT 58.534 33.333 0.00 0.00 0.00 5.68
7688 10221 6.589907 AGGAACGAATTAACAAAAATCATGCC 59.410 34.615 0.00 0.00 0.00 4.40
7881 10414 3.257873 TGTACCGGTTTTTCCTGATCGTA 59.742 43.478 15.04 0.00 0.00 3.43
7948 10481 1.006571 ACGACGACACATGGTGGAC 60.007 57.895 0.00 0.00 37.94 4.02
8039 10572 4.478206 ACAGATGCTACAACTATGCTGT 57.522 40.909 0.00 0.00 0.00 4.40
8290 10823 5.779241 TTGTATCTGGGGAGAAATCACTT 57.221 39.130 0.00 0.00 0.00 3.16
8309 10842 5.811613 CACAAAGACAAACCAACATGATTGT 59.188 36.000 0.00 2.63 38.62 2.71
8344 10877 1.401148 GCTCTGACAGAGTTTACGCGA 60.401 52.381 28.76 0.00 44.12 5.87
8383 10916 9.836864 TGTTATAGACATACTGAGAATTGCAAT 57.163 29.630 5.99 5.99 32.00 3.56
8403 10936 7.096065 CGATCGTGCTTCATCAGAAATGTTATA 60.096 37.037 7.03 0.00 32.35 0.98
8404 10937 6.292542 CGATCGTGCTTCATCAGAAATGTTAT 60.293 38.462 7.03 0.00 32.35 1.89
8424 10957 4.203764 GGTTTAGTGTGAATACGACGATCG 59.796 45.833 14.88 14.88 46.93 3.69
8425 10958 5.004156 GTGGTTTAGTGTGAATACGACGATC 59.996 44.000 0.00 0.00 0.00 3.69
8432 10965 7.667043 TCTTGATGTGGTTTAGTGTGAATAC 57.333 36.000 0.00 0.00 0.00 1.89
8485 11018 1.532007 GACGATCTACTCCTCGCGATT 59.468 52.381 10.36 0.00 38.42 3.34
8488 11021 0.869068 ATGACGATCTACTCCTCGCG 59.131 55.000 0.00 0.00 38.42 5.87
8513 11046 8.603304 AGTAATATGTTCTTGAGGTGGTTTAGT 58.397 33.333 0.00 0.00 0.00 2.24
8515 11048 9.880157 GTAGTAATATGTTCTTGAGGTGGTTTA 57.120 33.333 0.00 0.00 0.00 2.01
8591 11124 7.398618 TGAATTAAAATAACAGGCTCCATGGAA 59.601 33.333 17.00 0.00 0.00 3.53
8737 11278 4.521146 CCTTCTTAGCACATGAAGTCCAT 58.479 43.478 0.00 0.00 36.93 3.41
8778 11319 8.522003 TGAAATACATTAAAATGAGAGCTGCAA 58.478 29.630 9.60 0.00 39.67 4.08
8781 11322 9.844790 TGTTGAAATACATTAAAATGAGAGCTG 57.155 29.630 9.60 0.00 39.67 4.24
8818 11359 6.930722 TGCCAGAGACATAATGTATACATGTG 59.069 38.462 18.94 20.34 36.56 3.21
8825 11366 7.910584 TCACATATGCCAGAGACATAATGTAT 58.089 34.615 1.58 0.00 33.89 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.