Multiple sequence alignment - TraesCS1D01G236100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G236100 chr1D 100.000 4030 0 0 1 4030 325630460 325626431 0.000000e+00 7443
1 TraesCS1D01G236100 chr1D 92.656 640 42 3 3087 3722 455311890 455311252 0.000000e+00 917
2 TraesCS1D01G236100 chr1A 88.935 967 42 15 885 1807 418603183 418604128 0.000000e+00 1133
3 TraesCS1D01G236100 chr1A 93.759 689 36 5 2402 3083 418609918 418610606 0.000000e+00 1027
4 TraesCS1D01G236100 chr1A 81.143 525 56 17 376 885 418602511 418603007 8.170000e-102 381
5 TraesCS1D01G236100 chr1A 87.923 207 21 2 72 274 418601453 418601659 1.450000e-59 241
6 TraesCS1D01G236100 chr1A 95.349 86 4 0 3863 3948 418618424 418618509 1.950000e-28 137
7 TraesCS1D01G236100 chr1B 94.023 686 33 4 2402 3083 438059420 438058739 0.000000e+00 1033
8 TraesCS1D01G236100 chr1B 94.108 628 35 2 885 1512 438060765 438060140 0.000000e+00 953
9 TraesCS1D01G236100 chr1B 96.178 314 5 5 1502 1813 438059728 438059420 1.290000e-139 507
10 TraesCS1D01G236100 chr1B 79.504 605 62 20 318 885 438061510 438060931 1.370000e-99 374
11 TraesCS1D01G236100 chr1B 94.690 113 6 0 3836 3948 438056945 438056833 4.140000e-40 176
12 TraesCS1D01G236100 chr1B 94.444 108 6 0 3730 3837 438058742 438058635 2.490000e-37 167
13 TraesCS1D01G236100 chr3D 94.090 643 35 2 3083 3722 554997670 554998312 0.000000e+00 974
14 TraesCS1D01G236100 chr3D 93.280 625 39 3 3099 3722 253678495 253677873 0.000000e+00 918
15 TraesCS1D01G236100 chr3D 91.217 649 47 8 3079 3722 578896185 578895542 0.000000e+00 874
16 TraesCS1D01G236100 chr7D 93.146 642 40 4 3086 3726 409887578 409888216 0.000000e+00 939
17 TraesCS1D01G236100 chr7D 84.584 493 54 12 1814 2291 555535190 555535675 1.700000e-128 470
18 TraesCS1D01G236100 chr6D 92.879 646 39 5 3082 3722 419590994 419590351 0.000000e+00 931
19 TraesCS1D01G236100 chr6D 90.966 642 55 3 3082 3722 271122175 271122814 0.000000e+00 861
20 TraesCS1D01G236100 chr6D 84.857 350 39 10 1943 2291 17267430 17267094 1.390000e-89 340
21 TraesCS1D01G236100 chr2D 92.068 643 44 5 3084 3722 195723814 195723175 0.000000e+00 898
22 TraesCS1D01G236100 chr2D 86.752 468 56 5 1816 2281 601174148 601174611 2.150000e-142 516
23 TraesCS1D01G236100 chr2D 81.875 480 78 9 1815 2291 117464405 117464878 2.920000e-106 396
24 TraesCS1D01G236100 chr6A 92.635 611 41 4 3113 3720 54066076 54065467 0.000000e+00 876
25 TraesCS1D01G236100 chr3B 87.234 470 52 7 1815 2281 572846238 572846702 2.760000e-146 529
26 TraesCS1D01G236100 chr3B 85.361 485 60 8 1815 2291 671332283 671332764 3.620000e-135 492
27 TraesCS1D01G236100 chr3B 84.752 505 45 14 1815 2291 610217970 610217470 1.010000e-130 477
28 TraesCS1D01G236100 chr3B 83.817 482 65 12 1815 2291 732878535 732879008 2.860000e-121 446
29 TraesCS1D01G236100 chr3A 86.667 435 46 6 1812 2244 467120234 467120658 4.710000e-129 472
30 TraesCS1D01G236100 chr3A 86.777 121 13 3 2282 2400 700229615 700229496 9.090000e-27 132
31 TraesCS1D01G236100 chr3A 84.298 121 16 2 2282 2400 700208405 700208524 9.150000e-22 115
32 TraesCS1D01G236100 chr5A 85.977 435 49 9 1811 2244 365659692 365659269 4.750000e-124 455


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G236100 chr1D 325626431 325630460 4029 True 7443 7443 100.000000 1 4030 1 chr1D.!!$R1 4029
1 TraesCS1D01G236100 chr1D 455311252 455311890 638 True 917 917 92.656000 3087 3722 1 chr1D.!!$R2 635
2 TraesCS1D01G236100 chr1A 418609918 418610606 688 False 1027 1027 93.759000 2402 3083 1 chr1A.!!$F1 681
3 TraesCS1D01G236100 chr1A 418601453 418604128 2675 False 585 1133 86.000333 72 1807 3 chr1A.!!$F3 1735
4 TraesCS1D01G236100 chr1B 438056833 438061510 4677 True 535 1033 92.157833 318 3948 6 chr1B.!!$R1 3630
5 TraesCS1D01G236100 chr3D 554997670 554998312 642 False 974 974 94.090000 3083 3722 1 chr3D.!!$F1 639
6 TraesCS1D01G236100 chr3D 253677873 253678495 622 True 918 918 93.280000 3099 3722 1 chr3D.!!$R1 623
7 TraesCS1D01G236100 chr3D 578895542 578896185 643 True 874 874 91.217000 3079 3722 1 chr3D.!!$R2 643
8 TraesCS1D01G236100 chr7D 409887578 409888216 638 False 939 939 93.146000 3086 3726 1 chr7D.!!$F1 640
9 TraesCS1D01G236100 chr6D 419590351 419590994 643 True 931 931 92.879000 3082 3722 1 chr6D.!!$R2 640
10 TraesCS1D01G236100 chr6D 271122175 271122814 639 False 861 861 90.966000 3082 3722 1 chr6D.!!$F1 640
11 TraesCS1D01G236100 chr2D 195723175 195723814 639 True 898 898 92.068000 3084 3722 1 chr2D.!!$R1 638
12 TraesCS1D01G236100 chr6A 54065467 54066076 609 True 876 876 92.635000 3113 3720 1 chr6A.!!$R1 607
13 TraesCS1D01G236100 chr3B 610217470 610217970 500 True 477 477 84.752000 1815 2291 1 chr3B.!!$R1 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 1177 0.034089 ACTGGAGGGCATAAACCTGC 60.034 55.0 0.00 0.00 45.62 4.85 F
935 1909 0.178900 ACGGTTCCTCTCCTTTCCCT 60.179 55.0 0.00 0.00 0.00 4.20 F
1882 3334 0.033405 CCCCGAACTCTCAGTCCCTA 60.033 60.0 0.00 0.00 0.00 3.53 F
1952 3404 0.103572 GACTCGGCCGGTATTTGCTA 59.896 55.0 27.83 0.26 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1448 2443 0.033405 CTCCTTGGTCTCCTCGGGTA 60.033 60.0 0.00 0.00 0.00 3.69 R
1933 3385 0.103572 TAGCAAATACCGGCCGAGTC 59.896 55.0 30.73 10.27 0.00 3.36 R
2975 4458 0.175302 CAGATGCGCTCTTCTCCAGT 59.825 55.0 9.73 0.00 29.16 4.00 R
3053 4539 0.240945 GCATGCCTACTTGCAACGTT 59.759 50.0 6.36 0.00 45.84 3.99 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 2.238353 ACGCAGTGTCATCAGTTGC 58.762 52.632 0.00 0.00 42.51 4.17
30 31 0.250038 ACGCAGTGTCATCAGTTGCT 60.250 50.000 0.00 0.00 42.51 3.91
31 32 1.000843 ACGCAGTGTCATCAGTTGCTA 59.999 47.619 0.00 0.00 42.51 3.49
32 33 2.068519 CGCAGTGTCATCAGTTGCTAA 58.931 47.619 0.00 0.00 34.94 3.09
33 34 2.159787 CGCAGTGTCATCAGTTGCTAAC 60.160 50.000 0.00 0.00 34.94 2.34
34 35 2.807967 GCAGTGTCATCAGTTGCTAACA 59.192 45.455 0.00 0.00 34.55 2.41
35 36 3.250762 GCAGTGTCATCAGTTGCTAACAA 59.749 43.478 0.00 0.00 34.55 2.83
49 50 6.892658 TTGCTAACAACTGTGGATGTTTAT 57.107 33.333 2.08 0.00 38.88 1.40
50 51 6.494893 TGCTAACAACTGTGGATGTTTATC 57.505 37.500 2.08 0.00 38.88 1.75
51 52 6.237901 TGCTAACAACTGTGGATGTTTATCT 58.762 36.000 2.08 0.00 38.88 1.98
52 53 6.149308 TGCTAACAACTGTGGATGTTTATCTG 59.851 38.462 2.08 0.00 38.88 2.90
53 54 5.376854 AACAACTGTGGATGTTTATCTGC 57.623 39.130 0.00 0.00 35.41 4.26
54 55 4.655963 ACAACTGTGGATGTTTATCTGCT 58.344 39.130 0.00 0.00 33.68 4.24
55 56 4.456911 ACAACTGTGGATGTTTATCTGCTG 59.543 41.667 0.00 0.00 33.68 4.41
56 57 3.012518 ACTGTGGATGTTTATCTGCTGC 58.987 45.455 0.00 0.00 33.68 5.25
57 58 3.276857 CTGTGGATGTTTATCTGCTGCT 58.723 45.455 0.00 0.00 33.68 4.24
58 59 3.273434 TGTGGATGTTTATCTGCTGCTC 58.727 45.455 0.00 0.00 33.68 4.26
59 60 3.273434 GTGGATGTTTATCTGCTGCTCA 58.727 45.455 0.00 0.00 33.68 4.26
60 61 3.881688 GTGGATGTTTATCTGCTGCTCAT 59.118 43.478 0.00 0.00 33.68 2.90
61 62 3.881089 TGGATGTTTATCTGCTGCTCATG 59.119 43.478 0.00 0.00 33.68 3.07
62 63 4.132336 GGATGTTTATCTGCTGCTCATGA 58.868 43.478 0.00 0.00 33.68 3.07
63 64 4.213694 GGATGTTTATCTGCTGCTCATGAG 59.786 45.833 18.84 18.84 33.68 2.90
64 65 4.212143 TGTTTATCTGCTGCTCATGAGT 57.788 40.909 23.38 4.85 0.00 3.41
65 66 4.186926 TGTTTATCTGCTGCTCATGAGTC 58.813 43.478 23.38 15.78 0.00 3.36
66 67 4.186926 GTTTATCTGCTGCTCATGAGTCA 58.813 43.478 23.38 19.10 0.00 3.41
67 68 4.684484 TTATCTGCTGCTCATGAGTCAT 57.316 40.909 23.38 0.00 0.00 3.06
68 69 2.311124 TCTGCTGCTCATGAGTCATG 57.689 50.000 24.60 24.60 42.60 3.07
69 70 1.829222 TCTGCTGCTCATGAGTCATGA 59.171 47.619 29.39 29.39 46.84 3.07
84 85 3.705604 GTCATGAGACTAGCAGCTTCTC 58.294 50.000 14.94 14.94 41.64 2.87
114 115 1.214367 ACGGTTTGCACGTCTTACTG 58.786 50.000 0.00 0.00 41.25 2.74
132 133 8.827677 GTCTTACTGTGTAGTTGTTCTTCAAAT 58.172 33.333 0.00 0.00 38.36 2.32
136 137 6.601613 ACTGTGTAGTTGTTCTTCAAATGGAA 59.398 34.615 0.00 0.00 37.81 3.53
151 152 4.452733 GAAGGGCGGTCCACGGAG 62.453 72.222 0.00 0.00 44.51 4.63
187 188 1.866237 CGCTGTTTGTGGCGTACAT 59.134 52.632 0.00 0.00 45.34 2.29
192 193 0.372334 GTTTGTGGCGTACATAGCGG 59.628 55.000 0.00 0.00 39.48 5.52
194 195 0.037139 TTGTGGCGTACATAGCGGTT 60.037 50.000 0.00 0.00 39.48 4.44
209 210 2.022129 GGTTCTCGGCGTGTCACTG 61.022 63.158 6.85 0.00 0.00 3.66
211 212 3.220999 TTCTCGGCGTGTCACTGGG 62.221 63.158 6.85 0.00 0.00 4.45
227 228 0.838554 TGGGTTACCTGCTGCACCTA 60.839 55.000 0.00 0.00 37.76 3.08
235 236 1.472904 CCTGCTGCACCTATGAGTCTG 60.473 57.143 0.00 0.00 0.00 3.51
238 239 2.502947 TGCTGCACCTATGAGTCTGATT 59.497 45.455 0.00 0.00 0.00 2.57
239 240 2.871022 GCTGCACCTATGAGTCTGATTG 59.129 50.000 0.00 0.00 0.00 2.67
240 241 3.464907 CTGCACCTATGAGTCTGATTGG 58.535 50.000 0.00 0.00 0.00 3.16
243 244 3.369892 GCACCTATGAGTCTGATTGGTGT 60.370 47.826 25.29 0.00 44.12 4.16
244 245 4.186926 CACCTATGAGTCTGATTGGTGTG 58.813 47.826 19.67 1.62 40.07 3.82
245 246 3.840666 ACCTATGAGTCTGATTGGTGTGT 59.159 43.478 4.72 0.00 29.14 3.72
248 249 2.849942 TGAGTCTGATTGGTGTGTTGG 58.150 47.619 0.00 0.00 0.00 3.77
251 256 2.154462 GTCTGATTGGTGTGTTGGGAG 58.846 52.381 0.00 0.00 0.00 4.30
258 263 0.736325 GGTGTGTTGGGAGATCGACG 60.736 60.000 0.00 0.00 0.00 5.12
264 269 1.103803 TTGGGAGATCGACGAAGAGG 58.896 55.000 0.00 0.00 0.00 3.69
274 279 0.250338 GACGAAGAGGCTGGTTGGTT 60.250 55.000 0.00 0.00 0.00 3.67
277 282 1.270625 CGAAGAGGCTGGTTGGTTGTA 60.271 52.381 0.00 0.00 0.00 2.41
278 283 2.152016 GAAGAGGCTGGTTGGTTGTAC 58.848 52.381 0.00 0.00 0.00 2.90
279 284 0.034896 AGAGGCTGGTTGGTTGTACG 59.965 55.000 0.00 0.00 0.00 3.67
280 285 0.953960 GAGGCTGGTTGGTTGTACGG 60.954 60.000 0.00 0.00 0.00 4.02
282 287 1.894756 GCTGGTTGGTTGTACGGCA 60.895 57.895 0.00 0.00 0.00 5.69
289 432 1.741770 GGTTGTACGGCAGCTGAGG 60.742 63.158 20.43 10.59 0.00 3.86
290 433 2.047274 TTGTACGGCAGCTGAGGC 60.047 61.111 20.43 0.84 39.06 4.70
316 459 1.800805 ACCTTGCGTCAACTGATCAG 58.199 50.000 21.37 21.37 0.00 2.90
317 460 1.344438 ACCTTGCGTCAACTGATCAGA 59.656 47.619 29.27 4.20 0.00 3.27
318 461 1.998315 CCTTGCGTCAACTGATCAGAG 59.002 52.381 29.27 19.49 0.00 3.35
320 463 3.519579 CTTGCGTCAACTGATCAGAGAT 58.480 45.455 29.27 11.71 0.00 2.75
322 465 2.493278 TGCGTCAACTGATCAGAGATGA 59.507 45.455 29.27 23.34 0.00 2.92
323 466 3.114809 GCGTCAACTGATCAGAGATGAG 58.885 50.000 29.27 19.60 0.00 2.90
329 722 5.105432 TCAACTGATCAGAGATGAGTCCTTG 60.105 44.000 29.27 17.21 0.00 3.61
339 732 5.954752 AGAGATGAGTCCTTGTCTGATTGTA 59.045 40.000 0.00 0.00 0.00 2.41
342 735 6.382282 AGATGAGTCCTTGTCTGATTGTATCA 59.618 38.462 0.00 0.00 37.76 2.15
355 748 2.422276 TGTATCAGATGATCGCCACG 57.578 50.000 0.00 0.00 36.05 4.94
364 757 0.179137 TGATCGCCACGTCATCACTC 60.179 55.000 0.00 0.00 0.00 3.51
365 758 0.101399 GATCGCCACGTCATCACTCT 59.899 55.000 0.00 0.00 0.00 3.24
370 763 1.931906 CCACGTCATCACTCTGGATG 58.068 55.000 0.00 0.00 44.78 3.51
371 764 1.205655 CCACGTCATCACTCTGGATGT 59.794 52.381 0.00 0.00 44.00 3.06
374 767 1.753649 CGTCATCACTCTGGATGTCCT 59.246 52.381 0.09 0.00 44.00 3.85
385 1140 0.389757 GGATGTCCTTACTCGCTCCC 59.610 60.000 0.00 0.00 0.00 4.30
389 1144 2.058595 TCCTTACTCGCTCCCTGCC 61.059 63.158 0.00 0.00 38.78 4.85
420 1175 1.668826 TCACTGGAGGGCATAAACCT 58.331 50.000 0.00 0.00 42.18 3.50
422 1177 0.034089 ACTGGAGGGCATAAACCTGC 60.034 55.000 0.00 0.00 45.62 4.85
426 1181 2.298610 GGAGGGCATAAACCTGCTTAC 58.701 52.381 0.00 0.00 42.52 2.34
427 1182 2.092375 GGAGGGCATAAACCTGCTTACT 60.092 50.000 0.00 0.00 42.52 2.24
432 1187 4.929211 GGGCATAAACCTGCTTACTTTTTG 59.071 41.667 0.00 0.00 41.95 2.44
436 1191 6.740122 GCATAAACCTGCTTACTTTTTGGGAA 60.740 38.462 0.00 0.00 39.12 3.97
439 1196 4.479158 ACCTGCTTACTTTTTGGGAATGA 58.521 39.130 0.00 0.00 0.00 2.57
469 1228 2.137810 TGGTAAAGGTATGCTTGCCC 57.862 50.000 2.96 0.00 0.00 5.36
470 1229 1.638589 TGGTAAAGGTATGCTTGCCCT 59.361 47.619 2.96 0.00 0.00 5.19
475 1234 0.916358 AGGTATGCTTGCCCTGGAGT 60.916 55.000 2.96 0.00 0.00 3.85
485 1244 0.464554 GCCCTGGAGTCTACCAATGC 60.465 60.000 0.00 0.00 39.59 3.56
487 1246 2.398588 CCCTGGAGTCTACCAATGCTA 58.601 52.381 0.00 0.00 39.59 3.49
488 1247 2.103263 CCCTGGAGTCTACCAATGCTAC 59.897 54.545 0.00 0.00 39.59 3.58
491 1250 2.829720 TGGAGTCTACCAATGCTACGTT 59.170 45.455 0.00 0.00 36.96 3.99
492 1251 3.187700 GGAGTCTACCAATGCTACGTTG 58.812 50.000 0.00 0.00 0.00 4.10
498 1257 0.525761 CCAATGCTACGTTGGGTTGG 59.474 55.000 10.19 0.29 41.90 3.77
499 1258 1.243902 CAATGCTACGTTGGGTTGGT 58.756 50.000 0.00 0.00 0.00 3.67
500 1259 2.428491 CAATGCTACGTTGGGTTGGTA 58.572 47.619 0.00 0.00 0.00 3.25
501 1260 2.814919 CAATGCTACGTTGGGTTGGTAA 59.185 45.455 0.00 0.00 0.00 2.85
502 1261 2.634815 TGCTACGTTGGGTTGGTAAA 57.365 45.000 0.00 0.00 0.00 2.01
511 1270 3.237268 TGGGTTGGTAAATTGTCAGCT 57.763 42.857 0.00 0.00 0.00 4.24
513 1272 3.320541 TGGGTTGGTAAATTGTCAGCTTG 59.679 43.478 0.00 0.00 0.00 4.01
528 1304 6.240894 TGTCAGCTTGGTTCTTATCAGAAAT 58.759 36.000 0.00 0.00 40.90 2.17
557 1333 4.825546 CATGGATGCAGTCAATTAGGAC 57.174 45.455 0.00 0.00 38.08 3.85
558 1334 3.998913 TGGATGCAGTCAATTAGGACA 57.001 42.857 0.00 0.00 40.29 4.02
559 1335 4.299586 TGGATGCAGTCAATTAGGACAA 57.700 40.909 0.00 0.00 40.29 3.18
560 1336 4.661222 TGGATGCAGTCAATTAGGACAAA 58.339 39.130 0.00 0.00 40.29 2.83
561 1337 5.263599 TGGATGCAGTCAATTAGGACAAAT 58.736 37.500 0.00 0.00 40.29 2.32
589 1368 7.005902 ACAATCAATCATTGGGATGCACTATA 58.994 34.615 0.00 0.00 45.70 1.31
592 1371 6.604171 TCAATCATTGGGATGCACTATAACT 58.396 36.000 0.00 0.00 36.02 2.24
601 1380 5.105756 GGGATGCACTATAACTTTTGTTGCT 60.106 40.000 0.00 0.00 43.41 3.91
630 1409 3.445096 ACAAGCTTTGCTTCTTGTCTTGT 59.555 39.130 0.00 0.00 46.77 3.16
631 1410 4.082026 ACAAGCTTTGCTTCTTGTCTTGTT 60.082 37.500 0.00 0.00 46.77 2.83
632 1411 4.725790 AGCTTTGCTTCTTGTCTTGTTT 57.274 36.364 0.00 0.00 33.89 2.83
633 1412 5.835113 AGCTTTGCTTCTTGTCTTGTTTA 57.165 34.783 0.00 0.00 33.89 2.01
634 1413 6.396829 AGCTTTGCTTCTTGTCTTGTTTAT 57.603 33.333 0.00 0.00 33.89 1.40
635 1414 7.510549 AGCTTTGCTTCTTGTCTTGTTTATA 57.489 32.000 0.00 0.00 33.89 0.98
636 1415 7.940850 AGCTTTGCTTCTTGTCTTGTTTATAA 58.059 30.769 0.00 0.00 33.89 0.98
637 1416 8.413229 AGCTTTGCTTCTTGTCTTGTTTATAAA 58.587 29.630 0.00 0.00 33.89 1.40
638 1417 8.694394 GCTTTGCTTCTTGTCTTGTTTATAAAG 58.306 33.333 0.00 0.00 0.00 1.85
718 1502 4.173256 CGGGGAACAATAAACATTTGAGC 58.827 43.478 0.00 0.00 0.00 4.26
756 1542 4.385825 TGGTGGCAACTAAACTAACAGAG 58.614 43.478 3.27 0.00 37.61 3.35
759 1545 5.049612 GGTGGCAACTAAACTAACAGAGTTC 60.050 44.000 0.00 0.00 42.69 3.01
760 1546 5.049612 GTGGCAACTAAACTAACAGAGTTCC 60.050 44.000 0.00 0.00 42.69 3.62
761 1547 6.252014 TGGCAACTAAACTAACAGAGTTCCG 61.252 44.000 0.00 0.00 42.69 4.30
764 1550 3.509388 AACTAACAGAGTTCCGGCG 57.491 52.632 0.00 0.00 45.81 6.46
765 1551 0.669625 AACTAACAGAGTTCCGGCGC 60.670 55.000 0.00 0.00 45.81 6.53
766 1552 2.126228 TAACAGAGTTCCGGCGCG 60.126 61.111 0.00 0.00 0.00 6.86
801 1587 0.466124 GCGGAGTTTCTCTAGGGCAT 59.534 55.000 0.00 0.00 0.00 4.40
803 1589 2.288518 GCGGAGTTTCTCTAGGGCATAG 60.289 54.545 0.00 0.00 0.00 2.23
805 1591 2.037902 GGAGTTTCTCTAGGGCATAGGC 59.962 54.545 6.32 0.00 40.13 3.93
851 1638 5.509498 ACAAAGCTAGGCTGGAAATGATAA 58.491 37.500 0.43 0.00 39.62 1.75
858 1645 7.779798 AGCTAGGCTGGAAATGATAACAAAATA 59.220 33.333 0.43 0.00 37.57 1.40
872 1666 9.137459 TGATAACAAAATAAGAACCCAACTCAA 57.863 29.630 0.00 0.00 0.00 3.02
873 1667 9.406828 GATAACAAAATAAGAACCCAACTCAAC 57.593 33.333 0.00 0.00 0.00 3.18
874 1668 6.783708 ACAAAATAAGAACCCAACTCAACA 57.216 33.333 0.00 0.00 0.00 3.33
877 1671 7.547722 ACAAAATAAGAACCCAACTCAACAAAC 59.452 33.333 0.00 0.00 0.00 2.93
878 1672 7.418337 AAATAAGAACCCAACTCAACAAACT 57.582 32.000 0.00 0.00 0.00 2.66
879 1673 4.718940 AAGAACCCAACTCAACAAACTG 57.281 40.909 0.00 0.00 0.00 3.16
880 1674 3.963129 AGAACCCAACTCAACAAACTGA 58.037 40.909 0.00 0.00 0.00 3.41
882 1676 4.399303 AGAACCCAACTCAACAAACTGAAG 59.601 41.667 0.00 0.00 0.00 3.02
884 1678 2.223805 CCCAACTCAACAAACTGAAGGC 60.224 50.000 0.00 0.00 0.00 4.35
886 1680 2.426738 CAACTCAACAAACTGAAGGCCA 59.573 45.455 5.01 0.00 0.00 5.36
887 1681 2.024414 ACTCAACAAACTGAAGGCCAC 58.976 47.619 5.01 0.00 0.00 5.01
888 1682 2.301346 CTCAACAAACTGAAGGCCACT 58.699 47.619 5.01 0.00 0.00 4.00
889 1683 3.118038 ACTCAACAAACTGAAGGCCACTA 60.118 43.478 5.01 0.00 0.00 2.74
890 1684 3.882888 CTCAACAAACTGAAGGCCACTAA 59.117 43.478 5.01 0.00 0.00 2.24
891 1685 4.469657 TCAACAAACTGAAGGCCACTAAT 58.530 39.130 5.01 0.00 0.00 1.73
904 1878 1.771255 CCACTAATCCTTCCCTGGAGG 59.229 57.143 0.00 0.00 39.78 4.30
930 1904 1.982938 CCGGACGGTTCCTCTCCTT 60.983 63.158 0.00 0.00 40.23 3.36
935 1909 0.178900 ACGGTTCCTCTCCTTTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
954 1928 3.002102 CCTCTCTTTGCTGCTTTCTCTC 58.998 50.000 0.00 0.00 0.00 3.20
1020 1994 3.365265 GGTTGCGGTGGCTCCAAG 61.365 66.667 6.39 0.00 40.82 3.61
1348 2343 1.896465 CTTTGAAGGAGGAGGACGAGT 59.104 52.381 0.00 0.00 0.00 4.18
1352 2347 0.543174 AAGGAGGAGGACGAGTTGCT 60.543 55.000 0.00 0.00 0.00 3.91
1432 2427 1.746220 AGGAAGCAGTAGTAGCACTCG 59.254 52.381 0.00 0.00 0.00 4.18
1448 2443 1.272760 ACTCGTCAAGGAGGAGACCAT 60.273 52.381 19.31 0.00 44.32 3.55
1494 2489 1.072331 ACGTCTCCTGCTTCCACAAAT 59.928 47.619 0.00 0.00 0.00 2.32
1507 2924 1.424403 CACAAATGAGCGTGGTACGA 58.576 50.000 5.44 0.00 46.05 3.43
1641 3091 9.483916 TTTCTCTAGTCGTTTGATATTTGTGAA 57.516 29.630 0.00 0.00 0.00 3.18
1648 3098 8.487176 AGTCGTTTGATATTTGTGAATTTTTGC 58.513 29.630 0.00 0.00 0.00 3.68
1812 3264 2.215196 GTAGTTGTCCGGCTTCACAAA 58.785 47.619 7.92 0.00 34.33 2.83
1813 3265 1.757682 AGTTGTCCGGCTTCACAAAA 58.242 45.000 7.92 0.00 34.33 2.44
1836 3288 9.562408 AAAAGAAAAAGTCCAAAACAAACCTTA 57.438 25.926 0.00 0.00 0.00 2.69
1876 3328 2.770164 ATCAAACCCCGAACTCTCAG 57.230 50.000 0.00 0.00 0.00 3.35
1882 3334 0.033405 CCCCGAACTCTCAGTCCCTA 60.033 60.000 0.00 0.00 0.00 3.53
1887 3339 4.323562 CCCGAACTCTCAGTCCCTAAAATT 60.324 45.833 0.00 0.00 0.00 1.82
1888 3340 4.631813 CCGAACTCTCAGTCCCTAAAATTG 59.368 45.833 0.00 0.00 0.00 2.32
1910 3362 3.010420 GCACACCAAACTCTCTAATCCC 58.990 50.000 0.00 0.00 0.00 3.85
1930 3382 5.493809 TCCCGGTCTATTTTAAACCTTGAG 58.506 41.667 0.00 0.00 0.00 3.02
1932 3384 5.941647 CCCGGTCTATTTTAAACCTTGAGAA 59.058 40.000 0.00 0.00 0.00 2.87
1933 3385 6.093633 CCCGGTCTATTTTAAACCTTGAGAAG 59.906 42.308 0.00 0.00 0.00 2.85
1936 3388 7.603024 CGGTCTATTTTAAACCTTGAGAAGACT 59.397 37.037 0.00 0.00 32.29 3.24
1937 3389 8.937884 GGTCTATTTTAAACCTTGAGAAGACTC 58.062 37.037 0.00 0.00 42.88 3.36
1944 3396 1.878656 CTTGAGAAGACTCGGCCGGT 61.879 60.000 27.83 22.07 45.25 5.28
1952 3404 0.103572 GACTCGGCCGGTATTTGCTA 59.896 55.000 27.83 0.26 0.00 3.49
1978 3430 4.814294 CGGCCCAGTACCGCAGTC 62.814 72.222 0.00 0.00 44.90 3.51
1980 3432 4.065281 GCCCAGTACCGCAGTCGT 62.065 66.667 0.00 0.00 0.00 4.34
2016 3471 8.297426 CACCCTAATCTGGTTTTTCTTAGTTTC 58.703 37.037 0.00 0.00 32.46 2.78
2018 3473 9.078990 CCCTAATCTGGTTTTTCTTAGTTTCTT 57.921 33.333 0.00 0.00 0.00 2.52
2054 3530 8.205131 ACACATATCTAATTTTTGTCCGTACC 57.795 34.615 0.00 0.00 0.00 3.34
2071 3548 6.742264 GTCCGTACCCAATGTAATTTTTAACG 59.258 38.462 0.00 0.00 31.22 3.18
2254 3732 5.587043 ACGAACACTCTTTTACATGGTTCAA 59.413 36.000 0.00 0.00 34.40 2.69
2255 3733 6.094325 ACGAACACTCTTTTACATGGTTCAAA 59.906 34.615 0.00 0.00 34.40 2.69
2256 3734 7.138736 CGAACACTCTTTTACATGGTTCAAAT 58.861 34.615 0.00 0.00 34.40 2.32
2291 3769 7.840342 TGCATTCACTTTTTACAAACACATT 57.160 28.000 0.00 0.00 0.00 2.71
2292 3770 8.261492 TGCATTCACTTTTTACAAACACATTT 57.739 26.923 0.00 0.00 0.00 2.32
2293 3771 8.725148 TGCATTCACTTTTTACAAACACATTTT 58.275 25.926 0.00 0.00 0.00 1.82
2294 3772 9.209297 GCATTCACTTTTTACAAACACATTTTC 57.791 29.630 0.00 0.00 0.00 2.29
2297 3775 9.698309 TTCACTTTTTACAAACACATTTTCTGA 57.302 25.926 0.00 0.00 0.00 3.27
2298 3776 9.698309 TCACTTTTTACAAACACATTTTCTGAA 57.302 25.926 0.00 0.00 0.00 3.02
2304 3782 9.482627 TTTACAAACACATTTTCTGAAACTTGT 57.517 25.926 1.58 7.14 0.00 3.16
2305 3783 7.350110 ACAAACACATTTTCTGAAACTTGTG 57.650 32.000 27.27 27.27 39.15 3.33
2306 3784 7.151308 ACAAACACATTTTCTGAAACTTGTGA 58.849 30.769 31.56 10.87 37.80 3.58
2307 3785 7.329226 ACAAACACATTTTCTGAAACTTGTGAG 59.671 33.333 31.56 25.15 37.80 3.51
2308 3786 5.343249 ACACATTTTCTGAAACTTGTGAGC 58.657 37.500 31.56 0.00 37.80 4.26
2309 3787 5.105797 ACACATTTTCTGAAACTTGTGAGCA 60.106 36.000 31.56 9.17 37.80 4.26
2310 3788 5.981315 CACATTTTCTGAAACTTGTGAGCAT 59.019 36.000 26.10 6.12 37.12 3.79
2311 3789 6.477688 CACATTTTCTGAAACTTGTGAGCATT 59.522 34.615 26.10 3.14 37.12 3.56
2312 3790 6.698766 ACATTTTCTGAAACTTGTGAGCATTC 59.301 34.615 13.94 0.00 0.00 2.67
2313 3791 6.455360 TTTTCTGAAACTTGTGAGCATTCT 57.545 33.333 1.58 0.00 0.00 2.40
2314 3792 6.455360 TTTCTGAAACTTGTGAGCATTCTT 57.545 33.333 0.00 0.00 0.00 2.52
2315 3793 5.428496 TCTGAAACTTGTGAGCATTCTTG 57.572 39.130 0.00 0.00 0.00 3.02
2316 3794 5.125356 TCTGAAACTTGTGAGCATTCTTGA 58.875 37.500 0.00 0.00 0.00 3.02
2317 3795 5.589855 TCTGAAACTTGTGAGCATTCTTGAA 59.410 36.000 0.00 0.00 0.00 2.69
2318 3796 6.095300 TCTGAAACTTGTGAGCATTCTTGAAA 59.905 34.615 0.00 0.00 0.00 2.69
2319 3797 6.808829 TGAAACTTGTGAGCATTCTTGAAAT 58.191 32.000 0.00 0.00 0.00 2.17
2320 3798 7.267128 TGAAACTTGTGAGCATTCTTGAAATT 58.733 30.769 0.00 0.00 0.00 1.82
2321 3799 7.765360 TGAAACTTGTGAGCATTCTTGAAATTT 59.235 29.630 0.00 0.00 0.00 1.82
2322 3800 9.248291 GAAACTTGTGAGCATTCTTGAAATTTA 57.752 29.630 0.00 0.00 0.00 1.40
2323 3801 8.579682 AACTTGTGAGCATTCTTGAAATTTAC 57.420 30.769 0.00 0.00 0.00 2.01
2324 3802 7.715657 ACTTGTGAGCATTCTTGAAATTTACA 58.284 30.769 0.00 0.00 0.00 2.41
2325 3803 8.362639 ACTTGTGAGCATTCTTGAAATTTACAT 58.637 29.630 0.00 0.00 0.00 2.29
2326 3804 9.199982 CTTGTGAGCATTCTTGAAATTTACATT 57.800 29.630 0.00 0.00 0.00 2.71
2327 3805 9.545105 TTGTGAGCATTCTTGAAATTTACATTT 57.455 25.926 0.00 0.00 35.12 2.32
2328 3806 9.545105 TGTGAGCATTCTTGAAATTTACATTTT 57.455 25.926 0.00 0.00 32.35 1.82
2376 3854 8.859517 TCGAATCACACGAATATTATTGTACA 57.140 30.769 0.00 0.00 36.84 2.90
2377 3855 9.471084 TCGAATCACACGAATATTATTGTACAT 57.529 29.630 0.00 0.00 36.84 2.29
2409 3887 5.011635 ACATTTGTTTGGATTGACCCCTTAC 59.988 40.000 0.00 0.00 38.00 2.34
2541 4019 9.856488 GACCCAAAAGGAGTTTTATAGATTTTC 57.144 33.333 0.00 0.00 39.89 2.29
2660 4139 6.715280 TGGATTCTCTCTTTGTTTCTATGCT 58.285 36.000 0.00 0.00 0.00 3.79
2943 4426 4.062293 TGACGAACACAAGGTAAAGGATG 58.938 43.478 0.00 0.00 0.00 3.51
2947 4430 4.695455 CGAACACAAGGTAAAGGATGATGT 59.305 41.667 0.00 0.00 0.00 3.06
2975 4458 1.007734 GTCGGAGCTGTTGTCGTCA 60.008 57.895 0.00 0.00 0.00 4.35
2976 4459 1.007734 TCGGAGCTGTTGTCGTCAC 60.008 57.895 0.00 0.00 0.00 3.67
2977 4460 1.007271 CGGAGCTGTTGTCGTCACT 60.007 57.895 0.00 0.00 0.00 3.41
2984 4470 2.398498 CTGTTGTCGTCACTGGAGAAG 58.602 52.381 0.00 0.00 0.00 2.85
2997 4483 1.152989 GGAGAAGAGCGCATCTGCTG 61.153 60.000 18.53 0.00 44.83 4.41
2998 4484 0.459934 GAGAAGAGCGCATCTGCTGT 60.460 55.000 18.53 1.36 44.83 4.40
3007 4493 1.210931 CATCTGCTGTTGTTGCCCG 59.789 57.895 0.00 0.00 0.00 6.13
3064 4550 0.530288 AAGGCACAAACGTTGCAAGT 59.470 45.000 12.42 0.00 0.00 3.16
3074 4560 1.137404 GTTGCAAGTAGGCATGCGG 59.863 57.895 12.44 0.00 45.47 5.69
3197 4683 8.917415 AATCTTCAAGTCTCAAACAAAGAAAC 57.083 30.769 0.00 0.00 31.32 2.78
3299 4791 4.640771 ATCCTATTACATGACCGCCATT 57.359 40.909 0.00 0.00 31.94 3.16
3506 5000 4.280819 ACTGCCCATAACAAAGCACATAT 58.719 39.130 0.00 0.00 0.00 1.78
3548 5042 4.098044 CGCTGTATCGGTATCTATCCCATT 59.902 45.833 0.00 0.00 0.00 3.16
3567 5061 5.299279 CCCATTAAGCCACGTCTCAAATAAT 59.701 40.000 0.00 0.00 0.00 1.28
3621 5115 0.250793 TTATGTGAACCGACCGCCAT 59.749 50.000 0.00 0.00 0.00 4.40
3653 5148 4.074970 GCCAGAGGACAATCAAGAAAGAA 58.925 43.478 0.00 0.00 0.00 2.52
3706 5201 6.552445 AGCTACATCTTGTAGATCCTGTTT 57.448 37.500 16.73 0.00 45.35 2.83
3722 5217 3.745458 CCTGTTTAATTGCGTTTTGCCAT 59.255 39.130 0.00 0.00 45.60 4.40
3723 5218 4.377226 CCTGTTTAATTGCGTTTTGCCATG 60.377 41.667 0.00 0.00 45.60 3.66
3724 5219 4.371786 TGTTTAATTGCGTTTTGCCATGA 58.628 34.783 0.00 0.00 45.60 3.07
3725 5220 4.993584 TGTTTAATTGCGTTTTGCCATGAT 59.006 33.333 0.00 0.00 45.60 2.45
3726 5221 5.107182 TGTTTAATTGCGTTTTGCCATGATG 60.107 36.000 0.00 0.00 45.60 3.07
3727 5222 3.316071 AATTGCGTTTTGCCATGATGA 57.684 38.095 0.00 0.00 45.60 2.92
3728 5223 3.530265 ATTGCGTTTTGCCATGATGAT 57.470 38.095 0.00 0.00 45.60 2.45
3729 5224 4.652421 ATTGCGTTTTGCCATGATGATA 57.348 36.364 0.00 0.00 45.60 2.15
3730 5225 3.419264 TGCGTTTTGCCATGATGATAC 57.581 42.857 0.00 0.00 45.60 2.24
3731 5226 2.751806 TGCGTTTTGCCATGATGATACA 59.248 40.909 0.00 0.00 45.60 2.29
3732 5227 3.380954 TGCGTTTTGCCATGATGATACAT 59.619 39.130 0.00 0.00 45.60 2.29
3733 5228 3.732219 GCGTTTTGCCATGATGATACATG 59.268 43.478 0.00 0.00 44.78 3.21
3762 5257 5.876460 TGATACATGTATGTAGCCATGATGC 59.124 40.000 22.93 4.48 46.11 3.91
3764 5259 4.070009 ACATGTATGTAGCCATGATGCTG 58.930 43.478 0.00 0.00 42.77 4.41
3773 5268 1.771565 CCATGATGCTGTTGGTGGAT 58.228 50.000 0.00 0.00 0.00 3.41
3802 5297 9.132521 GCATTTCTTTTCATATATACATGCCAC 57.867 33.333 0.00 0.00 0.00 5.01
3873 7059 4.971830 CGAATGCACATGCGATTTTAAGAT 59.028 37.500 4.98 0.00 42.38 2.40
3896 7082 3.838244 TGGATAGAAAACCGAGGGATG 57.162 47.619 0.00 0.00 0.00 3.51
3907 7093 0.461961 CGAGGGATGAGACTTGACCC 59.538 60.000 0.00 0.00 40.71 4.46
3908 7094 0.461961 GAGGGATGAGACTTGACCCG 59.538 60.000 0.00 0.00 44.57 5.28
3965 7151 8.442632 TCTCAACATTTCATCATAACAGATCC 57.557 34.615 0.00 0.00 0.00 3.36
3966 7152 7.225341 TCTCAACATTTCATCATAACAGATCCG 59.775 37.037 0.00 0.00 0.00 4.18
3967 7153 5.679734 ACATTTCATCATAACAGATCCGC 57.320 39.130 0.00 0.00 0.00 5.54
3968 7154 5.125356 ACATTTCATCATAACAGATCCGCA 58.875 37.500 0.00 0.00 0.00 5.69
3969 7155 5.237996 ACATTTCATCATAACAGATCCGCAG 59.762 40.000 0.00 0.00 0.00 5.18
3970 7156 2.759191 TCATCATAACAGATCCGCAGC 58.241 47.619 0.00 0.00 0.00 5.25
3971 7157 1.802960 CATCATAACAGATCCGCAGCC 59.197 52.381 0.00 0.00 0.00 4.85
3972 7158 0.106708 TCATAACAGATCCGCAGCCC 59.893 55.000 0.00 0.00 0.00 5.19
3973 7159 0.179048 CATAACAGATCCGCAGCCCA 60.179 55.000 0.00 0.00 0.00 5.36
3974 7160 0.179045 ATAACAGATCCGCAGCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
3975 7161 2.252072 TAACAGATCCGCAGCCCACC 62.252 60.000 0.00 0.00 0.00 4.61
3976 7162 4.864334 CAGATCCGCAGCCCACCC 62.864 72.222 0.00 0.00 0.00 4.61
3979 7165 4.815973 ATCCGCAGCCCACCCCTA 62.816 66.667 0.00 0.00 0.00 3.53
3982 7168 4.473520 CGCAGCCCACCCCTACAG 62.474 72.222 0.00 0.00 0.00 2.74
3983 7169 3.330720 GCAGCCCACCCCTACAGT 61.331 66.667 0.00 0.00 0.00 3.55
3984 7170 2.990479 CAGCCCACCCCTACAGTC 59.010 66.667 0.00 0.00 0.00 3.51
3985 7171 1.613630 CAGCCCACCCCTACAGTCT 60.614 63.158 0.00 0.00 0.00 3.24
3986 7172 1.613630 AGCCCACCCCTACAGTCTG 60.614 63.158 0.00 0.00 0.00 3.51
3987 7173 1.612442 GCCCACCCCTACAGTCTGA 60.612 63.158 6.91 0.00 0.00 3.27
3988 7174 1.900545 GCCCACCCCTACAGTCTGAC 61.901 65.000 6.91 0.00 0.00 3.51
3989 7175 0.544357 CCCACCCCTACAGTCTGACA 60.544 60.000 10.88 0.00 0.00 3.58
3990 7176 0.608640 CCACCCCTACAGTCTGACAC 59.391 60.000 10.88 0.00 0.00 3.67
3991 7177 1.633774 CACCCCTACAGTCTGACACT 58.366 55.000 10.88 0.00 34.67 3.55
3992 7178 1.546476 CACCCCTACAGTCTGACACTC 59.454 57.143 10.88 0.00 30.26 3.51
3993 7179 1.429687 ACCCCTACAGTCTGACACTCT 59.570 52.381 10.88 0.00 30.26 3.24
3994 7180 1.821753 CCCCTACAGTCTGACACTCTG 59.178 57.143 10.88 1.92 30.26 3.35
3995 7181 2.555448 CCCCTACAGTCTGACACTCTGA 60.555 54.545 10.88 0.00 30.26 3.27
3996 7182 2.490115 CCCTACAGTCTGACACTCTGAC 59.510 54.545 10.88 2.01 43.12 3.51
3997 7183 2.490115 CCTACAGTCTGACACTCTGACC 59.510 54.545 10.88 0.00 43.60 4.02
3998 7184 2.073252 ACAGTCTGACACTCTGACCA 57.927 50.000 10.88 0.00 43.60 4.02
3999 7185 2.603021 ACAGTCTGACACTCTGACCAT 58.397 47.619 10.88 0.00 43.60 3.55
4000 7186 2.968574 ACAGTCTGACACTCTGACCATT 59.031 45.455 10.88 0.00 43.60 3.16
4001 7187 3.389329 ACAGTCTGACACTCTGACCATTT 59.611 43.478 10.88 0.00 43.60 2.32
4002 7188 4.141620 ACAGTCTGACACTCTGACCATTTT 60.142 41.667 10.88 0.00 43.60 1.82
4003 7189 4.818546 CAGTCTGACACTCTGACCATTTTT 59.181 41.667 10.88 0.00 43.60 1.94
4004 7190 4.818546 AGTCTGACACTCTGACCATTTTTG 59.181 41.667 10.88 0.00 43.60 2.44
4005 7191 3.565482 TCTGACACTCTGACCATTTTTGC 59.435 43.478 0.00 0.00 0.00 3.68
4006 7192 3.554934 TGACACTCTGACCATTTTTGCT 58.445 40.909 0.00 0.00 0.00 3.91
4007 7193 4.713553 TGACACTCTGACCATTTTTGCTA 58.286 39.130 0.00 0.00 0.00 3.49
4008 7194 5.316167 TGACACTCTGACCATTTTTGCTAT 58.684 37.500 0.00 0.00 0.00 2.97
4009 7195 6.472016 TGACACTCTGACCATTTTTGCTATA 58.528 36.000 0.00 0.00 0.00 1.31
4010 7196 6.939730 TGACACTCTGACCATTTTTGCTATAA 59.060 34.615 0.00 0.00 0.00 0.98
4011 7197 7.119699 TGACACTCTGACCATTTTTGCTATAAG 59.880 37.037 0.00 0.00 0.00 1.73
4012 7198 7.168219 ACACTCTGACCATTTTTGCTATAAGA 58.832 34.615 0.00 0.00 0.00 2.10
4013 7199 7.831193 ACACTCTGACCATTTTTGCTATAAGAT 59.169 33.333 0.00 0.00 0.00 2.40
4014 7200 9.330063 CACTCTGACCATTTTTGCTATAAGATA 57.670 33.333 0.00 0.00 0.00 1.98
4019 7205 9.851686 TGACCATTTTTGCTATAAGATATCACT 57.148 29.630 5.32 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.108992 GACACTGCGTCCGGTTATCA 60.109 55.000 0.00 0.00 38.85 2.15
2 3 0.108992 TGACACTGCGTCCGGTTATC 60.109 55.000 0.00 0.00 44.71 1.75
3 4 0.535335 ATGACACTGCGTCCGGTTAT 59.465 50.000 0.00 0.00 44.71 1.89
5 6 1.374252 GATGACACTGCGTCCGGTT 60.374 57.895 0.00 0.00 44.71 4.44
6 7 2.261671 GATGACACTGCGTCCGGT 59.738 61.111 0.00 0.00 44.71 5.28
7 8 1.807165 CTGATGACACTGCGTCCGG 60.807 63.158 0.00 0.00 44.71 5.14
8 9 0.667487 AACTGATGACACTGCGTCCG 60.667 55.000 0.00 0.00 44.71 4.79
9 10 0.792640 CAACTGATGACACTGCGTCC 59.207 55.000 0.00 0.00 44.71 4.79
10 11 0.164647 GCAACTGATGACACTGCGTC 59.835 55.000 0.00 0.00 45.61 5.19
11 12 0.250038 AGCAACTGATGACACTGCGT 60.250 50.000 0.00 0.00 35.90 5.24
12 13 1.713597 TAGCAACTGATGACACTGCG 58.286 50.000 0.00 0.00 35.90 5.18
13 14 2.807967 TGTTAGCAACTGATGACACTGC 59.192 45.455 0.00 0.00 32.89 4.40
26 27 6.714810 AGATAAACATCCACAGTTGTTAGCAA 59.285 34.615 0.00 0.00 35.36 3.91
27 28 6.149308 CAGATAAACATCCACAGTTGTTAGCA 59.851 38.462 0.00 0.00 35.36 3.49
28 29 6.546395 CAGATAAACATCCACAGTTGTTAGC 58.454 40.000 0.00 0.00 35.36 3.09
29 30 6.372659 AGCAGATAAACATCCACAGTTGTTAG 59.627 38.462 0.00 0.00 35.36 2.34
30 31 6.149308 CAGCAGATAAACATCCACAGTTGTTA 59.851 38.462 0.00 0.00 35.36 2.41
31 32 5.048504 CAGCAGATAAACATCCACAGTTGTT 60.049 40.000 0.00 0.00 37.48 2.83
32 33 4.456911 CAGCAGATAAACATCCACAGTTGT 59.543 41.667 0.00 0.00 0.00 3.32
33 34 4.673580 GCAGCAGATAAACATCCACAGTTG 60.674 45.833 0.00 0.00 0.00 3.16
34 35 3.441572 GCAGCAGATAAACATCCACAGTT 59.558 43.478 0.00 0.00 0.00 3.16
35 36 3.012518 GCAGCAGATAAACATCCACAGT 58.987 45.455 0.00 0.00 0.00 3.55
36 37 3.276857 AGCAGCAGATAAACATCCACAG 58.723 45.455 0.00 0.00 0.00 3.66
37 38 3.273434 GAGCAGCAGATAAACATCCACA 58.727 45.455 0.00 0.00 0.00 4.17
38 39 3.273434 TGAGCAGCAGATAAACATCCAC 58.727 45.455 0.00 0.00 0.00 4.02
39 40 3.632643 TGAGCAGCAGATAAACATCCA 57.367 42.857 0.00 0.00 0.00 3.41
40 41 4.132336 TCATGAGCAGCAGATAAACATCC 58.868 43.478 0.00 0.00 0.00 3.51
41 42 4.815308 ACTCATGAGCAGCAGATAAACATC 59.185 41.667 22.83 0.00 0.00 3.06
42 43 4.778579 ACTCATGAGCAGCAGATAAACAT 58.221 39.130 22.83 0.00 0.00 2.71
43 44 4.186926 GACTCATGAGCAGCAGATAAACA 58.813 43.478 22.83 0.00 0.00 2.83
44 45 4.186926 TGACTCATGAGCAGCAGATAAAC 58.813 43.478 22.83 1.27 0.00 2.01
45 46 4.476628 TGACTCATGAGCAGCAGATAAA 57.523 40.909 22.83 0.00 0.00 1.40
46 47 4.100498 TCATGACTCATGAGCAGCAGATAA 59.900 41.667 22.83 0.00 44.60 1.75
47 48 3.640029 TCATGACTCATGAGCAGCAGATA 59.360 43.478 22.83 5.74 44.60 1.98
48 49 2.434702 TCATGACTCATGAGCAGCAGAT 59.565 45.455 22.83 0.53 44.60 2.90
49 50 1.829222 TCATGACTCATGAGCAGCAGA 59.171 47.619 22.83 15.73 44.60 4.26
50 51 2.311124 TCATGACTCATGAGCAGCAG 57.689 50.000 22.83 14.05 44.60 4.24
63 64 3.130164 TGAGAAGCTGCTAGTCTCATGAC 59.870 47.826 23.42 5.37 42.14 3.06
64 65 3.130164 GTGAGAAGCTGCTAGTCTCATGA 59.870 47.826 27.53 10.28 46.92 3.07
65 66 3.130869 AGTGAGAAGCTGCTAGTCTCATG 59.869 47.826 27.53 0.00 46.92 3.07
66 67 3.364549 AGTGAGAAGCTGCTAGTCTCAT 58.635 45.455 27.53 17.61 46.92 2.90
67 68 2.801483 AGTGAGAAGCTGCTAGTCTCA 58.199 47.619 23.42 23.42 44.20 3.27
68 69 3.866883 AAGTGAGAAGCTGCTAGTCTC 57.133 47.619 19.64 19.64 38.62 3.36
69 70 3.831911 AGAAAGTGAGAAGCTGCTAGTCT 59.168 43.478 0.90 2.49 0.00 3.24
70 71 4.082245 AGAGAAAGTGAGAAGCTGCTAGTC 60.082 45.833 0.90 3.24 0.00 2.59
77 78 2.029470 CCGTCAGAGAAAGTGAGAAGCT 60.029 50.000 0.00 0.00 0.00 3.74
81 82 3.717707 CAAACCGTCAGAGAAAGTGAGA 58.282 45.455 0.00 0.00 0.00 3.27
82 83 2.221981 GCAAACCGTCAGAGAAAGTGAG 59.778 50.000 0.00 0.00 0.00 3.51
84 85 1.939934 TGCAAACCGTCAGAGAAAGTG 59.060 47.619 0.00 0.00 0.00 3.16
187 188 3.332493 GACACGCCGAGAACCGCTA 62.332 63.158 0.00 0.00 36.84 4.26
192 193 2.022129 CCAGTGACACGCCGAGAAC 61.022 63.158 0.00 0.00 0.00 3.01
194 195 3.680786 CCCAGTGACACGCCGAGA 61.681 66.667 0.00 0.00 0.00 4.04
209 210 0.546598 ATAGGTGCAGCAGGTAACCC 59.453 55.000 19.63 0.00 32.85 4.11
211 212 2.093447 ACTCATAGGTGCAGCAGGTAAC 60.093 50.000 19.63 0.00 0.00 2.50
227 228 3.415212 CCAACACACCAATCAGACTCAT 58.585 45.455 0.00 0.00 0.00 2.90
235 236 2.009774 CGATCTCCCAACACACCAATC 58.990 52.381 0.00 0.00 0.00 2.67
238 239 0.320374 GTCGATCTCCCAACACACCA 59.680 55.000 0.00 0.00 0.00 4.17
239 240 0.736325 CGTCGATCTCCCAACACACC 60.736 60.000 0.00 0.00 0.00 4.16
240 241 0.242825 TCGTCGATCTCCCAACACAC 59.757 55.000 0.00 0.00 0.00 3.82
243 244 1.472878 CTCTTCGTCGATCTCCCAACA 59.527 52.381 0.00 0.00 0.00 3.33
244 245 1.202313 CCTCTTCGTCGATCTCCCAAC 60.202 57.143 0.00 0.00 0.00 3.77
245 246 1.103803 CCTCTTCGTCGATCTCCCAA 58.896 55.000 0.00 0.00 0.00 4.12
248 249 0.030101 CAGCCTCTTCGTCGATCTCC 59.970 60.000 0.00 0.00 0.00 3.71
251 256 0.173708 AACCAGCCTCTTCGTCGATC 59.826 55.000 0.00 0.00 0.00 3.69
258 263 2.152016 GTACAACCAACCAGCCTCTTC 58.848 52.381 0.00 0.00 0.00 2.87
264 269 1.852067 CTGCCGTACAACCAACCAGC 61.852 60.000 0.00 0.00 0.00 4.85
274 279 4.082523 GGCCTCAGCTGCCGTACA 62.083 66.667 9.47 0.00 39.48 2.90
298 441 1.998315 CTCTGATCAGTTGACGCAAGG 59.002 52.381 21.92 0.00 46.39 3.61
300 443 3.056607 TCATCTCTGATCAGTTGACGCAA 60.057 43.478 21.92 0.00 0.00 4.85
304 447 4.402155 AGGACTCATCTCTGATCAGTTGAC 59.598 45.833 21.92 11.89 0.00 3.18
306 449 5.110598 CAAGGACTCATCTCTGATCAGTTG 58.889 45.833 21.92 16.93 0.00 3.16
309 452 4.646040 AGACAAGGACTCATCTCTGATCAG 59.354 45.833 17.07 17.07 0.00 2.90
311 454 4.644234 TCAGACAAGGACTCATCTCTGATC 59.356 45.833 0.00 0.00 31.38 2.92
313 456 4.039603 TCAGACAAGGACTCATCTCTGA 57.960 45.455 0.00 0.00 33.41 3.27
316 459 5.083533 ACAATCAGACAAGGACTCATCTC 57.916 43.478 0.00 0.00 0.00 2.75
317 460 6.382282 TGATACAATCAGACAAGGACTCATCT 59.618 38.462 0.00 0.00 33.59 2.90
318 461 6.577103 TGATACAATCAGACAAGGACTCATC 58.423 40.000 0.00 0.00 33.59 2.92
339 732 0.746659 TGACGTGGCGATCATCTGAT 59.253 50.000 0.00 0.00 37.51 2.90
342 735 3.577231 GATGACGTGGCGATCATCT 57.423 52.632 14.67 0.00 45.20 2.90
355 748 3.902881 AAGGACATCCAGAGTGATGAC 57.097 47.619 7.93 1.99 43.94 3.06
364 757 1.067821 GGAGCGAGTAAGGACATCCAG 59.932 57.143 0.00 0.00 38.89 3.86
365 758 1.112113 GGAGCGAGTAAGGACATCCA 58.888 55.000 0.00 0.00 38.89 3.41
370 763 1.142097 GCAGGGAGCGAGTAAGGAC 59.858 63.158 0.00 0.00 0.00 3.85
371 764 3.617368 GCAGGGAGCGAGTAAGGA 58.383 61.111 0.00 0.00 0.00 3.36
397 1152 3.883489 GGTTTATGCCCTCCAGTGATTAC 59.117 47.826 0.00 0.00 0.00 1.89
416 1171 4.898861 TCATTCCCAAAAAGTAAGCAGGTT 59.101 37.500 0.00 0.00 0.00 3.50
458 1217 0.543749 AGACTCCAGGGCAAGCATAC 59.456 55.000 0.00 0.00 0.00 2.39
463 1222 0.984230 TTGGTAGACTCCAGGGCAAG 59.016 55.000 0.00 0.00 38.80 4.01
469 1228 2.427453 ACGTAGCATTGGTAGACTCCAG 59.573 50.000 0.00 0.00 38.80 3.86
470 1229 2.453521 ACGTAGCATTGGTAGACTCCA 58.546 47.619 0.00 0.00 35.49 3.86
475 1234 1.903860 ACCCAACGTAGCATTGGTAGA 59.096 47.619 2.70 0.00 44.46 2.59
485 1244 4.515944 TGACAATTTACCAACCCAACGTAG 59.484 41.667 0.00 0.00 0.00 3.51
487 1246 3.288964 TGACAATTTACCAACCCAACGT 58.711 40.909 0.00 0.00 0.00 3.99
488 1247 3.855524 GCTGACAATTTACCAACCCAACG 60.856 47.826 0.00 0.00 0.00 4.10
491 1250 3.237268 AGCTGACAATTTACCAACCCA 57.763 42.857 0.00 0.00 0.00 4.51
492 1251 3.306019 CCAAGCTGACAATTTACCAACCC 60.306 47.826 0.00 0.00 0.00 4.11
493 1252 3.320826 ACCAAGCTGACAATTTACCAACC 59.679 43.478 0.00 0.00 0.00 3.77
494 1253 4.584327 ACCAAGCTGACAATTTACCAAC 57.416 40.909 0.00 0.00 0.00 3.77
497 1256 5.453567 AAGAACCAAGCTGACAATTTACC 57.546 39.130 0.00 0.00 0.00 2.85
498 1257 7.816640 TGATAAGAACCAAGCTGACAATTTAC 58.183 34.615 0.00 0.00 0.00 2.01
499 1258 7.882791 TCTGATAAGAACCAAGCTGACAATTTA 59.117 33.333 0.00 0.00 0.00 1.40
500 1259 6.716628 TCTGATAAGAACCAAGCTGACAATTT 59.283 34.615 0.00 0.00 0.00 1.82
501 1260 6.240894 TCTGATAAGAACCAAGCTGACAATT 58.759 36.000 0.00 0.00 0.00 2.32
502 1261 5.809001 TCTGATAAGAACCAAGCTGACAAT 58.191 37.500 0.00 0.00 0.00 2.71
511 1270 7.039853 TGCATGAACATTTCTGATAAGAACCAA 60.040 33.333 0.00 0.00 0.00 3.67
513 1272 6.855836 TGCATGAACATTTCTGATAAGAACC 58.144 36.000 0.00 0.00 0.00 3.62
544 1320 6.573664 TTGTCCATTTGTCCTAATTGACTG 57.426 37.500 0.00 0.00 33.57 3.51
554 1330 5.813672 CCAATGATTGATTGTCCATTTGTCC 59.186 40.000 6.76 0.00 40.07 4.02
555 1331 5.813672 CCCAATGATTGATTGTCCATTTGTC 59.186 40.000 6.76 0.00 40.07 3.18
556 1332 5.484644 TCCCAATGATTGATTGTCCATTTGT 59.515 36.000 6.76 0.00 40.07 2.83
557 1333 5.979993 TCCCAATGATTGATTGTCCATTTG 58.020 37.500 6.76 0.00 40.07 2.32
558 1334 6.588204 CATCCCAATGATTGATTGTCCATTT 58.412 36.000 6.76 0.00 40.07 2.32
559 1335 5.454187 GCATCCCAATGATTGATTGTCCATT 60.454 40.000 6.76 0.00 40.07 3.16
560 1336 4.039973 GCATCCCAATGATTGATTGTCCAT 59.960 41.667 6.76 0.00 40.07 3.41
561 1337 3.385433 GCATCCCAATGATTGATTGTCCA 59.615 43.478 6.76 0.00 40.07 4.02
589 1368 4.688511 TGTGTTCGTAGCAACAAAAGTT 57.311 36.364 0.00 0.00 38.01 2.66
592 1371 3.127895 AGCTTGTGTTCGTAGCAACAAAA 59.872 39.130 0.00 0.00 38.01 2.44
630 1409 9.596677 CGATTGGACGTGTTTAAACTTTATAAA 57.403 29.630 18.72 7.89 0.00 1.40
631 1410 8.772705 ACGATTGGACGTGTTTAAACTTTATAA 58.227 29.630 18.72 8.05 44.84 0.98
632 1411 8.309163 ACGATTGGACGTGTTTAAACTTTATA 57.691 30.769 18.72 0.00 44.84 0.98
633 1412 7.172019 AGACGATTGGACGTGTTTAAACTTTAT 59.828 33.333 18.72 2.72 46.52 1.40
634 1413 6.479660 AGACGATTGGACGTGTTTAAACTTTA 59.520 34.615 18.72 0.00 46.52 1.85
635 1414 5.295045 AGACGATTGGACGTGTTTAAACTTT 59.705 36.000 18.72 3.55 46.52 2.66
636 1415 4.812626 AGACGATTGGACGTGTTTAAACTT 59.187 37.500 18.72 3.89 46.52 2.66
637 1416 4.210537 CAGACGATTGGACGTGTTTAAACT 59.789 41.667 18.72 0.00 46.52 2.66
638 1417 4.025480 ACAGACGATTGGACGTGTTTAAAC 60.025 41.667 11.54 11.54 46.52 2.01
679 1458 2.285083 CCCGGCGATTGAACTTCATTA 58.715 47.619 9.30 0.00 0.00 1.90
718 1502 1.369209 CCAGCTTGTCGTTTGCGTG 60.369 57.895 0.00 0.00 39.49 5.34
851 1638 6.783708 TGTTGAGTTGGGTTCTTATTTTGT 57.216 33.333 0.00 0.00 0.00 2.83
858 1645 4.340617 TCAGTTTGTTGAGTTGGGTTCTT 58.659 39.130 0.00 0.00 0.00 2.52
872 1666 3.074538 AGGATTAGTGGCCTTCAGTTTGT 59.925 43.478 3.32 0.00 0.00 2.83
873 1667 3.690460 AGGATTAGTGGCCTTCAGTTTG 58.310 45.455 3.32 0.00 0.00 2.93
874 1668 4.388577 AAGGATTAGTGGCCTTCAGTTT 57.611 40.909 3.32 0.00 40.37 2.66
880 1674 1.566231 CAGGGAAGGATTAGTGGCCTT 59.434 52.381 3.32 0.00 46.74 4.35
882 1676 0.183731 CCAGGGAAGGATTAGTGGCC 59.816 60.000 0.00 0.00 0.00 5.36
884 1678 1.771255 CCTCCAGGGAAGGATTAGTGG 59.229 57.143 0.00 0.00 36.99 4.00
886 1680 2.765502 GACCTCCAGGGAAGGATTAGT 58.234 52.381 0.93 0.00 40.27 2.24
887 1681 1.689273 CGACCTCCAGGGAAGGATTAG 59.311 57.143 0.93 0.00 40.27 1.73
888 1682 1.289830 TCGACCTCCAGGGAAGGATTA 59.710 52.381 0.93 0.00 40.27 1.75
889 1683 0.042731 TCGACCTCCAGGGAAGGATT 59.957 55.000 0.93 0.00 40.27 3.01
890 1684 0.688087 GTCGACCTCCAGGGAAGGAT 60.688 60.000 3.51 0.00 40.27 3.24
891 1685 1.305046 GTCGACCTCCAGGGAAGGA 60.305 63.158 3.51 0.00 40.27 3.36
930 1904 2.107204 AGAAAGCAGCAAAGAGAGGGAA 59.893 45.455 0.00 0.00 0.00 3.97
935 1909 2.289945 GGGAGAGAAAGCAGCAAAGAGA 60.290 50.000 0.00 0.00 0.00 3.10
954 1928 2.041405 GGAGGGAGGAGGTGAGGG 60.041 72.222 0.00 0.00 0.00 4.30
1067 2041 4.760047 TCCGGAAGAGCTTGCCGC 62.760 66.667 0.00 0.00 43.52 6.53
1068 2042 2.510238 CTCCGGAAGAGCTTGCCG 60.510 66.667 5.23 13.82 44.42 5.69
1069 2043 2.124942 CCTCCGGAAGAGCTTGCC 60.125 66.667 5.23 0.00 41.74 4.52
1125 2108 2.123640 GACGAGGAGGGGGAGGAG 60.124 72.222 0.00 0.00 0.00 3.69
1180 2175 4.070552 GTCGGTCTTGGGCTCGCT 62.071 66.667 0.00 0.00 0.00 4.93
1229 2224 2.712743 CTTATCCTCGACGACGGCGG 62.713 65.000 24.91 13.85 43.17 6.13
1343 2338 1.523758 GGTGGATTTCAGCAACTCGT 58.476 50.000 0.00 0.00 42.97 4.18
1352 2347 0.258484 ATCGGCCATGGTGGATTTCA 59.742 50.000 14.67 0.00 40.96 2.69
1432 2427 1.763545 GGGTATGGTCTCCTCCTTGAC 59.236 57.143 0.00 0.00 0.00 3.18
1448 2443 0.033405 CTCCTTGGTCTCCTCGGGTA 60.033 60.000 0.00 0.00 0.00 3.69
1494 2489 2.865308 CGAGTCGTACCACGCTCA 59.135 61.111 3.82 0.00 41.40 4.26
1507 2924 6.494893 TGCTAAATTCAAATTAGTGCGAGT 57.505 33.333 0.00 0.00 33.77 4.18
1641 3091 3.706086 AGGTGACCTTGAGTTGCAAAAAT 59.294 39.130 0.00 0.00 35.74 1.82
1646 3096 0.249868 CGAGGTGACCTTGAGTTGCA 60.250 55.000 13.86 0.00 37.20 4.08
1647 3097 0.951040 CCGAGGTGACCTTGAGTTGC 60.951 60.000 20.55 0.00 37.20 4.17
1648 3098 0.393077 ACCGAGGTGACCTTGAGTTG 59.607 55.000 20.55 5.91 37.20 3.16
1812 3264 9.562408 TTTAAGGTTTGTTTTGGACTTTTTCTT 57.438 25.926 0.00 0.00 0.00 2.52
1813 3265 9.733556 ATTTAAGGTTTGTTTTGGACTTTTTCT 57.266 25.926 0.00 0.00 0.00 2.52
1836 3288 6.919721 TGATTTAGCTTTCGCCTACAAATTT 58.080 32.000 0.00 0.00 36.60 1.82
1876 3328 2.243810 TGGTGTGCCAATTTTAGGGAC 58.756 47.619 0.00 0.00 46.44 4.46
1887 3339 3.559171 GGATTAGAGAGTTTGGTGTGCCA 60.559 47.826 0.00 0.00 44.38 4.92
1888 3340 3.010420 GGATTAGAGAGTTTGGTGTGCC 58.990 50.000 0.00 0.00 0.00 5.01
1910 3362 7.603024 AGTCTTCTCAAGGTTTAAAATAGACCG 59.397 37.037 0.00 0.00 38.48 4.79
1930 3382 1.287425 CAAATACCGGCCGAGTCTTC 58.713 55.000 30.73 0.00 0.00 2.87
1932 3384 1.153429 GCAAATACCGGCCGAGTCT 60.153 57.895 30.73 12.77 0.00 3.24
1933 3385 0.103572 TAGCAAATACCGGCCGAGTC 59.896 55.000 30.73 10.27 0.00 3.36
1936 3388 2.335316 ATTTAGCAAATACCGGCCGA 57.665 45.000 30.73 8.21 0.00 5.54
1937 3389 2.542824 CCAATTTAGCAAATACCGGCCG 60.543 50.000 21.04 21.04 0.00 6.13
1944 3396 1.410882 GCCGGCCCAATTTAGCAAATA 59.589 47.619 18.11 0.00 0.00 1.40
1991 3445 8.225416 AGAAACTAAGAAAAACCAGATTAGGGT 58.775 33.333 0.00 0.00 41.41 4.34
2034 3510 7.830201 ACATTGGGTACGGACAAAAATTAGATA 59.170 33.333 0.00 0.00 0.00 1.98
2035 3511 6.661805 ACATTGGGTACGGACAAAAATTAGAT 59.338 34.615 0.00 0.00 0.00 1.98
2046 3522 6.742264 CGTTAAAAATTACATTGGGTACGGAC 59.258 38.462 0.00 0.00 0.00 4.79
2049 3525 6.032670 GTGCGTTAAAAATTACATTGGGTACG 59.967 38.462 0.00 0.00 0.00 3.67
2054 3530 6.755461 TGTGTGCGTTAAAAATTACATTGG 57.245 33.333 0.00 0.00 0.00 3.16
2229 3707 6.282167 TGAACCATGTAAAAGAGTGTTCGTA 58.718 36.000 0.00 0.00 0.00 3.43
2232 3710 8.871686 AATTTGAACCATGTAAAAGAGTGTTC 57.128 30.769 0.00 0.00 0.00 3.18
2272 3750 9.698309 TTCAGAAAATGTGTTTGTAAAAAGTGA 57.302 25.926 0.00 0.00 0.00 3.41
2281 3759 7.151308 TCACAAGTTTCAGAAAATGTGTTTGT 58.849 30.769 26.85 13.91 39.53 2.83
2285 3763 5.105797 TGCTCACAAGTTTCAGAAAATGTGT 60.106 36.000 26.85 17.32 39.53 3.72
2286 3764 5.342433 TGCTCACAAGTTTCAGAAAATGTG 58.658 37.500 24.49 24.49 39.72 3.21
2291 3769 6.095300 TCAAGAATGCTCACAAGTTTCAGAAA 59.905 34.615 0.00 0.00 0.00 2.52
2292 3770 5.589855 TCAAGAATGCTCACAAGTTTCAGAA 59.410 36.000 0.00 0.00 0.00 3.02
2293 3771 5.125356 TCAAGAATGCTCACAAGTTTCAGA 58.875 37.500 0.00 0.00 0.00 3.27
2294 3772 5.428496 TCAAGAATGCTCACAAGTTTCAG 57.572 39.130 0.00 0.00 0.00 3.02
2295 3773 5.833406 TTCAAGAATGCTCACAAGTTTCA 57.167 34.783 0.00 0.00 0.00 2.69
2296 3774 7.704789 AATTTCAAGAATGCTCACAAGTTTC 57.295 32.000 0.00 0.00 0.00 2.78
2297 3775 9.034544 GTAAATTTCAAGAATGCTCACAAGTTT 57.965 29.630 0.00 0.00 0.00 2.66
2298 3776 8.196771 TGTAAATTTCAAGAATGCTCACAAGTT 58.803 29.630 0.00 0.00 0.00 2.66
2299 3777 7.715657 TGTAAATTTCAAGAATGCTCACAAGT 58.284 30.769 0.00 0.00 0.00 3.16
2300 3778 8.752766 ATGTAAATTTCAAGAATGCTCACAAG 57.247 30.769 0.00 0.00 0.00 3.16
2301 3779 9.545105 AAATGTAAATTTCAAGAATGCTCACAA 57.455 25.926 0.00 0.00 0.00 3.33
2302 3780 9.545105 AAAATGTAAATTTCAAGAATGCTCACA 57.455 25.926 0.00 0.00 0.00 3.58
2351 3829 8.859517 TGTACAATAATATTCGTGTGATTCGA 57.140 30.769 12.14 0.00 35.50 3.71
2377 3855 9.482627 GGTCAATCCAAACAAATGTTTATACAA 57.517 29.630 10.92 0.00 45.54 2.41
2378 3856 8.091449 GGGTCAATCCAAACAAATGTTTATACA 58.909 33.333 10.92 0.00 45.54 2.29
2379 3857 7.547722 GGGGTCAATCCAAACAAATGTTTATAC 59.452 37.037 10.92 4.40 45.54 1.47
2380 3858 7.456269 AGGGGTCAATCCAAACAAATGTTTATA 59.544 33.333 10.92 3.61 45.54 0.98
2381 3859 6.272090 AGGGGTCAATCCAAACAAATGTTTAT 59.728 34.615 10.92 0.54 45.54 1.40
2382 3860 5.604650 AGGGGTCAATCCAAACAAATGTTTA 59.395 36.000 10.92 0.00 45.54 2.01
2384 3862 3.973305 AGGGGTCAATCCAAACAAATGTT 59.027 39.130 0.00 0.00 40.50 2.71
2385 3863 3.586429 AGGGGTCAATCCAAACAAATGT 58.414 40.909 0.00 0.00 38.11 2.71
2386 3864 4.622260 AAGGGGTCAATCCAAACAAATG 57.378 40.909 0.00 0.00 38.11 2.32
2387 3865 4.219725 CGTAAGGGGTCAATCCAAACAAAT 59.780 41.667 0.00 0.00 38.11 2.32
2388 3866 3.570550 CGTAAGGGGTCAATCCAAACAAA 59.429 43.478 0.00 0.00 38.11 2.83
2389 3867 3.150767 CGTAAGGGGTCAATCCAAACAA 58.849 45.455 0.00 0.00 38.11 2.83
2390 3868 2.106857 ACGTAAGGGGTCAATCCAAACA 59.893 45.455 0.00 0.00 46.39 2.83
2391 3869 2.786777 ACGTAAGGGGTCAATCCAAAC 58.213 47.619 0.00 0.00 46.39 2.93
2392 3870 3.512219 AACGTAAGGGGTCAATCCAAA 57.488 42.857 0.00 0.00 46.39 3.28
2393 3871 3.512219 AAACGTAAGGGGTCAATCCAA 57.488 42.857 0.00 0.00 46.39 3.53
2394 3872 4.847990 ATAAACGTAAGGGGTCAATCCA 57.152 40.909 0.00 0.00 46.39 3.41
2395 3873 6.327154 CAAAATAAACGTAAGGGGTCAATCC 58.673 40.000 0.00 0.00 46.39 3.01
2396 3874 6.327154 CCAAAATAAACGTAAGGGGTCAATC 58.673 40.000 0.00 0.00 46.39 2.67
2397 3875 5.336929 GCCAAAATAAACGTAAGGGGTCAAT 60.337 40.000 0.00 0.00 46.39 2.57
2398 3876 4.022155 GCCAAAATAAACGTAAGGGGTCAA 60.022 41.667 0.00 0.00 46.39 3.18
2399 3877 3.506844 GCCAAAATAAACGTAAGGGGTCA 59.493 43.478 0.00 0.00 46.39 4.02
2400 3878 3.119388 GGCCAAAATAAACGTAAGGGGTC 60.119 47.826 0.00 0.00 46.39 4.46
2745 4227 8.396390 GTCACGTTGAGTACTAGAGATATTTCA 58.604 37.037 0.00 0.00 0.00 2.69
2958 4441 1.007734 GTGACGACAACAGCTCCGA 60.008 57.895 0.00 0.00 0.00 4.55
2965 4448 2.028876 TCTTCTCCAGTGACGACAACA 58.971 47.619 0.00 0.00 0.00 3.33
2975 4458 0.175302 CAGATGCGCTCTTCTCCAGT 59.825 55.000 9.73 0.00 29.16 4.00
2976 4459 1.152989 GCAGATGCGCTCTTCTCCAG 61.153 60.000 9.73 0.00 29.16 3.86
2977 4460 1.153489 GCAGATGCGCTCTTCTCCA 60.153 57.895 9.73 0.00 29.16 3.86
3007 4493 0.454452 GTTCACCGGCGATTTGCTTC 60.454 55.000 9.30 0.00 45.43 3.86
3035 4521 4.697756 TGTGCCTTCCCGCCTTCG 62.698 66.667 0.00 0.00 0.00 3.79
3052 4538 1.335872 GCATGCCTACTTGCAACGTTT 60.336 47.619 6.36 0.00 45.84 3.60
3053 4539 0.240945 GCATGCCTACTTGCAACGTT 59.759 50.000 6.36 0.00 45.84 3.99
3064 4550 1.920734 AATGTGTCCCCGCATGCCTA 61.921 55.000 13.15 0.00 40.87 3.93
3107 4593 0.911045 TTCAGATGCAGAGGCTGGGA 60.911 55.000 0.00 0.00 41.91 4.37
3173 4659 7.970614 GTGTTTCTTTGTTTGAGACTTGAAGAT 59.029 33.333 0.00 0.00 0.00 2.40
3207 4696 3.760580 ACTGCTTAGCTCTTTGTGAGT 57.239 42.857 5.60 0.00 44.41 3.41
3251 4740 4.826274 TGTAGTGCTCCTATCTTTTGCT 57.174 40.909 0.00 0.00 0.00 3.91
3299 4791 4.408276 TGGGATATTTTCAACCGGTTTGA 58.592 39.130 19.55 15.72 42.83 2.69
3548 5042 5.242434 ACACATTATTTGAGACGTGGCTTA 58.758 37.500 0.00 0.00 0.00 3.09
3567 5061 4.020573 ACTCCACCGAATTCTATCAACACA 60.021 41.667 3.52 0.00 0.00 3.72
3621 5115 7.953005 TGATTGTCCTCTGGCAAAAATTATA 57.047 32.000 0.00 0.00 0.00 0.98
3653 5148 9.630098 GTGATCAACATTAATCAATCAAACACT 57.370 29.630 0.00 0.00 33.89 3.55
3668 5163 6.413052 AGATGTAGCTTCTGTGATCAACATT 58.587 36.000 0.00 0.00 38.39 2.71
3705 5200 4.814147 TCATCATGGCAAAACGCAATTAA 58.186 34.783 0.00 0.00 45.17 1.40
3706 5201 4.446994 TCATCATGGCAAAACGCAATTA 57.553 36.364 0.00 0.00 45.17 1.40
3730 5225 7.820872 TGGCTACATACATGTATCATCTTCATG 59.179 37.037 15.60 6.65 41.92 3.07
3731 5226 7.910584 TGGCTACATACATGTATCATCTTCAT 58.089 34.615 15.60 0.00 41.92 2.57
3732 5227 7.301868 TGGCTACATACATGTATCATCTTCA 57.698 36.000 15.60 7.59 41.92 3.02
3733 5228 8.037166 TCATGGCTACATACATGTATCATCTTC 58.963 37.037 15.60 5.30 43.68 2.87
3741 5236 5.221702 ACAGCATCATGGCTACATACATGTA 60.222 40.000 8.27 8.27 43.68 2.29
3762 5257 2.559668 AGAAATGCACATCCACCAACAG 59.440 45.455 0.00 0.00 0.00 3.16
3764 5259 3.665745 AAGAAATGCACATCCACCAAC 57.334 42.857 0.00 0.00 0.00 3.77
3773 5268 9.681692 GCATGTATATATGAAAAGAAATGCACA 57.318 29.630 13.18 0.00 37.29 4.57
3802 5297 2.677003 AAACGGATGCGGACAAGCG 61.677 57.895 12.44 0.00 40.67 4.68
3862 7048 9.503427 GGTTTTCTATCCAACATCTTAAAATCG 57.497 33.333 0.00 0.00 0.00 3.34
3873 7059 2.907696 TCCCTCGGTTTTCTATCCAACA 59.092 45.455 0.00 0.00 0.00 3.33
3896 7082 3.403276 CGTCTTCGGGTCAAGTCTC 57.597 57.895 0.00 0.00 0.00 3.36
3907 7093 2.169789 CATCAGCAGCCCGTCTTCG 61.170 63.158 0.00 0.00 0.00 3.79
3908 7094 2.467826 GCATCAGCAGCCCGTCTTC 61.468 63.158 0.00 0.00 41.58 2.87
3920 7106 9.608617 GTTGAGATATTTATGTGAATGCATCAG 57.391 33.333 0.00 0.00 39.19 2.90
3948 7134 3.561310 GCTGCGGATCTGTTATGATGAAA 59.439 43.478 2.89 0.00 0.00 2.69
3949 7135 3.133691 GCTGCGGATCTGTTATGATGAA 58.866 45.455 2.89 0.00 0.00 2.57
3950 7136 2.548707 GGCTGCGGATCTGTTATGATGA 60.549 50.000 2.89 0.00 0.00 2.92
3951 7137 1.802960 GGCTGCGGATCTGTTATGATG 59.197 52.381 2.89 0.00 0.00 3.07
3952 7138 1.271054 GGGCTGCGGATCTGTTATGAT 60.271 52.381 2.89 0.00 0.00 2.45
3953 7139 0.106708 GGGCTGCGGATCTGTTATGA 59.893 55.000 2.89 0.00 0.00 2.15
3954 7140 0.179048 TGGGCTGCGGATCTGTTATG 60.179 55.000 2.89 0.00 0.00 1.90
3955 7141 0.179045 GTGGGCTGCGGATCTGTTAT 60.179 55.000 2.89 0.00 0.00 1.89
3956 7142 1.220749 GTGGGCTGCGGATCTGTTA 59.779 57.895 2.89 0.00 0.00 2.41
3957 7143 2.045926 GTGGGCTGCGGATCTGTT 60.046 61.111 2.89 0.00 0.00 3.16
3958 7144 4.101448 GGTGGGCTGCGGATCTGT 62.101 66.667 2.89 0.00 0.00 3.41
3959 7145 4.864334 GGGTGGGCTGCGGATCTG 62.864 72.222 0.00 0.00 0.00 2.90
3962 7148 4.815973 TAGGGGTGGGCTGCGGAT 62.816 66.667 0.00 0.00 0.00 4.18
3965 7151 4.473520 CTGTAGGGGTGGGCTGCG 62.474 72.222 0.00 0.00 0.00 5.18
3966 7152 3.330720 ACTGTAGGGGTGGGCTGC 61.331 66.667 0.00 0.00 0.00 5.25
3967 7153 1.613630 AGACTGTAGGGGTGGGCTG 60.614 63.158 0.00 0.00 0.00 4.85
3968 7154 1.613630 CAGACTGTAGGGGTGGGCT 60.614 63.158 0.00 0.00 0.00 5.19
3969 7155 1.612442 TCAGACTGTAGGGGTGGGC 60.612 63.158 1.59 0.00 0.00 5.36
3970 7156 0.544357 TGTCAGACTGTAGGGGTGGG 60.544 60.000 1.59 0.00 0.00 4.61
3971 7157 0.608640 GTGTCAGACTGTAGGGGTGG 59.391 60.000 1.59 0.00 0.00 4.61
3972 7158 1.546476 GAGTGTCAGACTGTAGGGGTG 59.454 57.143 1.59 0.00 33.83 4.61
3973 7159 1.429687 AGAGTGTCAGACTGTAGGGGT 59.570 52.381 1.59 0.00 33.83 4.95
3974 7160 1.821753 CAGAGTGTCAGACTGTAGGGG 59.178 57.143 1.59 0.00 33.83 4.79
3975 7161 2.490115 GTCAGAGTGTCAGACTGTAGGG 59.510 54.545 1.59 0.00 33.83 3.53
3976 7162 2.490115 GGTCAGAGTGTCAGACTGTAGG 59.510 54.545 1.59 0.00 33.96 3.18
3977 7163 3.149981 TGGTCAGAGTGTCAGACTGTAG 58.850 50.000 1.59 0.00 33.96 2.74
3978 7164 3.223674 TGGTCAGAGTGTCAGACTGTA 57.776 47.619 1.59 0.00 33.96 2.74
3979 7165 2.073252 TGGTCAGAGTGTCAGACTGT 57.927 50.000 1.59 0.00 33.96 3.55
3980 7166 3.674528 AATGGTCAGAGTGTCAGACTG 57.325 47.619 1.31 0.00 33.96 3.51
3981 7167 4.696479 AAAATGGTCAGAGTGTCAGACT 57.304 40.909 1.31 0.00 33.96 3.24
3982 7168 4.555511 GCAAAAATGGTCAGAGTGTCAGAC 60.556 45.833 0.00 0.00 32.87 3.51
3983 7169 3.565482 GCAAAAATGGTCAGAGTGTCAGA 59.435 43.478 0.00 0.00 0.00 3.27
3984 7170 3.567164 AGCAAAAATGGTCAGAGTGTCAG 59.433 43.478 0.00 0.00 0.00 3.51
3985 7171 3.554934 AGCAAAAATGGTCAGAGTGTCA 58.445 40.909 0.00 0.00 0.00 3.58
3986 7172 5.886960 ATAGCAAAAATGGTCAGAGTGTC 57.113 39.130 0.00 0.00 0.00 3.67
3987 7173 7.168219 TCTTATAGCAAAAATGGTCAGAGTGT 58.832 34.615 0.00 0.00 0.00 3.55
3988 7174 7.615582 TCTTATAGCAAAAATGGTCAGAGTG 57.384 36.000 0.00 0.00 0.00 3.51
3993 7179 9.851686 AGTGATATCTTATAGCAAAAATGGTCA 57.148 29.630 3.98 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.