Multiple sequence alignment - TraesCS1D01G236000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G236000 chr1D 100.000 4623 0 0 1 4623 325590061 325594683 0.000000e+00 8538.0
1 TraesCS1D01G236000 chr1D 96.875 32 1 0 4591 4622 312644997 312645028 2.000000e-03 54.7
2 TraesCS1D01G236000 chr1A 94.613 2005 53 25 1726 3676 418935502 418933499 0.000000e+00 3053.0
3 TraesCS1D01G236000 chr1A 92.558 1169 55 10 367 1521 418936953 418935803 0.000000e+00 1648.0
4 TraesCS1D01G236000 chr1A 90.330 424 26 6 3817 4237 418933499 418933088 4.070000e-150 542.0
5 TraesCS1D01G236000 chr1A 95.238 210 10 0 1520 1729 418935747 418935538 2.670000e-87 333.0
6 TraesCS1D01G236000 chr1A 94.764 191 8 2 1 189 418937367 418937177 3.500000e-76 296.0
7 TraesCS1D01G236000 chr1A 90.769 130 12 0 210 339 418937080 418936951 1.710000e-39 174.0
8 TraesCS1D01G236000 chr1A 89.928 139 7 2 4288 4419 418933073 418932935 6.150000e-39 172.0
9 TraesCS1D01G236000 chr1A 91.398 93 8 0 4444 4536 570272765 570272857 1.350000e-25 128.0
10 TraesCS1D01G236000 chr1A 100.000 32 0 0 2015 2046 418935510 418935541 5.000000e-05 60.2
11 TraesCS1D01G236000 chr1A 100.000 29 0 0 4594 4622 574829447 574829475 2.000000e-03 54.7
12 TraesCS1D01G236000 chr1B 93.944 1255 34 6 1520 2767 438034570 438035789 0.000000e+00 1858.0
13 TraesCS1D01G236000 chr1B 94.750 800 20 4 2892 3674 438036152 438036946 0.000000e+00 1225.0
14 TraesCS1D01G236000 chr1B 91.065 873 44 9 647 1516 438033665 438034506 0.000000e+00 1149.0
15 TraesCS1D01G236000 chr1B 88.372 430 40 6 3814 4242 438036945 438037365 4.130000e-140 508.0
16 TraesCS1D01G236000 chr1B 92.442 344 24 2 187 529 438032960 438033302 1.490000e-134 490.0
17 TraesCS1D01G236000 chr1B 94.764 191 8 2 1 189 438032608 438032798 3.500000e-76 296.0
18 TraesCS1D01G236000 chr1B 93.333 105 6 1 3672 3775 364115943 364116047 2.230000e-33 154.0
19 TraesCS1D01G236000 chr1B 93.204 103 6 1 3673 3774 70500445 70500547 2.880000e-32 150.0
20 TraesCS1D01G236000 chr1B 90.909 110 8 2 3668 3775 414091035 414090926 3.730000e-31 147.0
21 TraesCS1D01G236000 chr1B 95.588 68 3 0 2847 2914 438036073 438036140 4.890000e-20 110.0
22 TraesCS1D01G236000 chr1B 100.000 58 0 0 2768 2825 438035817 438035874 1.760000e-19 108.0
23 TraesCS1D01G236000 chr2D 93.729 303 17 2 1520 1821 506283035 506283336 1.960000e-123 453.0
24 TraesCS1D01G236000 chr2D 92.361 144 10 1 1368 1511 506282827 506282969 2.180000e-48 204.0
25 TraesCS1D01G236000 chr2D 84.337 83 6 6 3744 3821 116641942 116641862 1.780000e-09 75.0
26 TraesCS1D01G236000 chr2D 100.000 28 0 0 4595 4622 29260547 29260520 8.000000e-03 52.8
27 TraesCS1D01G236000 chr7B 93.377 302 19 1 1520 1821 29941579 29941279 3.280000e-121 446.0
28 TraesCS1D01G236000 chr7B 88.060 67 3 4 3776 3839 592596064 592596128 1.780000e-09 75.0
29 TraesCS1D01G236000 chr7B 100.000 30 0 0 4591 4620 412338189 412338218 6.460000e-04 56.5
30 TraesCS1D01G236000 chr7B 100.000 30 0 0 4593 4622 460329551 460329580 6.460000e-04 56.5
31 TraesCS1D01G236000 chr3D 93.277 119 8 0 1368 1486 488892499 488892617 4.750000e-40 176.0
32 TraesCS1D01G236000 chr3D 86.301 146 18 2 3672 3815 49483864 49483719 1.720000e-34 158.0
33 TraesCS1D01G236000 chr3D 94.231 104 5 1 3673 3775 87926161 87926058 1.720000e-34 158.0
34 TraesCS1D01G236000 chr4D 93.333 105 6 1 3672 3775 136489690 136489586 2.230000e-33 154.0
35 TraesCS1D01G236000 chr3B 93.204 103 6 1 3673 3774 633539752 633539650 2.880000e-32 150.0
36 TraesCS1D01G236000 chr7D 84.967 153 14 6 3676 3820 616306800 616306649 3.730000e-31 147.0
37 TraesCS1D01G236000 chr7D 83.448 145 18 4 3673 3815 109302983 109303123 3.750000e-26 130.0
38 TraesCS1D01G236000 chr7D 86.607 112 12 2 4420 4531 429477341 429477449 2.260000e-23 121.0
39 TraesCS1D01G236000 chr7D 100.000 29 0 0 4594 4622 117887799 117887771 2.000000e-03 54.7
40 TraesCS1D01G236000 chrUn 88.732 71 3 4 3747 3813 31599637 31599568 1.070000e-11 82.4
41 TraesCS1D01G236000 chrUn 100.000 29 0 0 4594 4622 367862384 367862356 2.000000e-03 54.7
42 TraesCS1D01G236000 chrUn 100.000 28 0 0 4595 4622 37327418 37327445 8.000000e-03 52.8
43 TraesCS1D01G236000 chrUn 100.000 28 0 0 4595 4622 41679937 41679910 8.000000e-03 52.8
44 TraesCS1D01G236000 chrUn 96.875 32 0 1 4592 4622 74119443 74119474 8.000000e-03 52.8
45 TraesCS1D01G236000 chrUn 100.000 28 0 0 4595 4622 75274532 75274505 8.000000e-03 52.8
46 TraesCS1D01G236000 chr2B 95.918 49 1 1 3776 3824 519180785 519180832 1.380000e-10 78.7
47 TraesCS1D01G236000 chr5B 88.060 67 5 3 3779 3844 407219428 407219364 4.960000e-10 76.8
48 TraesCS1D01G236000 chr5B 100.000 30 0 0 4594 4623 141368967 141368938 6.460000e-04 56.5
49 TraesCS1D01G236000 chr5B 92.308 39 1 2 4586 4622 636342808 636342770 2.000000e-03 54.7
50 TraesCS1D01G236000 chr3A 96.970 33 1 0 4591 4623 425606334 425606366 6.460000e-04 56.5
51 TraesCS1D01G236000 chr6D 96.875 32 1 0 4591 4622 68688203 68688234 2.000000e-03 54.7
52 TraesCS1D01G236000 chr6D 96.875 32 1 0 4591 4622 271602766 271602797 2.000000e-03 54.7
53 TraesCS1D01G236000 chr6D 100.000 29 0 0 4594 4622 344338830 344338802 2.000000e-03 54.7
54 TraesCS1D01G236000 chr6D 100.000 28 0 0 4595 4622 145466653 145466626 8.000000e-03 52.8
55 TraesCS1D01G236000 chr5A 96.875 32 1 0 4591 4622 244448151 244448120 2.000000e-03 54.7
56 TraesCS1D01G236000 chr4A 100.000 29 0 0 4594 4622 185555175 185555203 2.000000e-03 54.7
57 TraesCS1D01G236000 chr4A 100.000 29 0 0 4594 4622 591600452 591600480 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G236000 chr1D 325590061 325594683 4622 False 8538.000000 8538 100.000000 1 4623 1 chr1D.!!$F2 4622
1 TraesCS1D01G236000 chr1A 418932935 418937367 4432 True 888.285714 3053 92.600000 1 4419 7 chr1A.!!$R1 4418
2 TraesCS1D01G236000 chr1B 438032608 438037365 4757 False 718.000000 1858 93.865625 1 4242 8 chr1B.!!$F3 4241
3 TraesCS1D01G236000 chr2D 506282827 506283336 509 False 328.500000 453 93.045000 1368 1821 2 chr2D.!!$F1 453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
533 715 0.322456 CAAAATCGCCCTCCAGACCA 60.322 55.000 0.0 0.0 0.00 4.02 F
1222 1662 0.755698 TCTCATCGCCCCCTCTGTAC 60.756 60.000 0.0 0.0 0.00 2.90 F
1851 2394 1.272769 GTAGAGCTAATAGGCACCCCG 59.727 57.143 0.0 0.0 35.76 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1511 1951 0.323178 AGTGCCCAAAGCCAGATGAG 60.323 55.000 0.00 0.0 42.71 2.90 R
2752 3307 1.234821 CGGTGGTGCTTCAAGCTAAA 58.765 50.000 11.57 0.0 42.97 1.85 R
3799 4609 1.203149 ACAACTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 5.532406 TGAGTTCTGAATGAAGAAAACAGGG 59.468 40.000 0.00 0.00 37.90 4.45
133 134 7.041721 TGAGAATACAAGAATGCGTTGAGTAT 58.958 34.615 0.00 0.00 0.00 2.12
134 135 7.222805 TGAGAATACAAGAATGCGTTGAGTATC 59.777 37.037 0.00 0.00 0.00 2.24
135 136 5.890110 ATACAAGAATGCGTTGAGTATCG 57.110 39.130 0.00 0.00 38.61 2.92
136 137 3.845178 ACAAGAATGCGTTGAGTATCGA 58.155 40.909 0.00 0.00 38.61 3.59
137 138 4.433615 ACAAGAATGCGTTGAGTATCGAT 58.566 39.130 2.16 2.16 38.61 3.59
138 139 4.504461 ACAAGAATGCGTTGAGTATCGATC 59.496 41.667 0.00 0.00 38.61 3.69
139 140 4.307443 AGAATGCGTTGAGTATCGATCA 57.693 40.909 0.00 0.00 38.61 2.92
140 141 4.876125 AGAATGCGTTGAGTATCGATCAT 58.124 39.130 0.00 0.00 38.61 2.45
141 142 4.683320 AGAATGCGTTGAGTATCGATCATG 59.317 41.667 0.00 0.00 38.61 3.07
142 143 2.127251 TGCGTTGAGTATCGATCATGC 58.873 47.619 0.00 3.35 38.61 4.06
143 144 1.457303 GCGTTGAGTATCGATCATGCC 59.543 52.381 0.00 0.00 38.61 4.40
151 154 4.021229 AGTATCGATCATGCCCGGTATAA 58.979 43.478 0.00 0.00 0.00 0.98
169 172 5.221402 GGTATAAAACCGAGTAGCTAGGCTT 60.221 44.000 0.00 0.00 38.15 4.35
177 180 4.320641 CCGAGTAGCTAGGCTTAGAATCAC 60.321 50.000 7.11 0.00 40.44 3.06
185 188 2.836981 AGGCTTAGAATCACTGCAGAGT 59.163 45.455 23.35 0.00 0.00 3.24
189 192 5.355596 GCTTAGAATCACTGCAGAGTATGT 58.644 41.667 23.35 7.23 0.00 2.29
191 194 6.682611 GCTTAGAATCACTGCAGAGTATGTCT 60.683 42.308 23.35 15.91 35.00 3.41
201 368 6.096673 TGCAGAGTATGTCTTGAACTTGTA 57.903 37.500 0.00 0.00 30.64 2.41
204 371 7.661437 TGCAGAGTATGTCTTGAACTTGTAATT 59.339 33.333 0.00 0.00 30.64 1.40
221 388 6.197364 TGTAATTAAATAACGGCTGGTTGG 57.803 37.500 0.00 0.00 39.75 3.77
234 401 1.468520 CTGGTTGGTAATGGCGTTCTG 59.531 52.381 0.00 0.00 0.00 3.02
337 504 5.637810 GCAGCACATGTAGAAACTACAGTAA 59.362 40.000 15.12 0.00 0.00 2.24
338 505 6.183360 GCAGCACATGTAGAAACTACAGTAAG 60.183 42.308 15.12 8.81 0.00 2.34
339 506 6.868864 CAGCACATGTAGAAACTACAGTAAGT 59.131 38.462 15.12 9.29 0.00 2.24
340 507 8.027189 CAGCACATGTAGAAACTACAGTAAGTA 58.973 37.037 15.12 0.00 0.00 2.24
341 508 8.582437 AGCACATGTAGAAACTACAGTAAGTAA 58.418 33.333 15.12 0.00 30.92 2.24
342 509 8.645487 GCACATGTAGAAACTACAGTAAGTAAC 58.355 37.037 15.12 5.85 30.92 2.50
343 510 9.909644 CACATGTAGAAACTACAGTAAGTAACT 57.090 33.333 15.12 0.00 39.81 2.24
470 637 3.089874 CCGCTCCATCCCCTCCAA 61.090 66.667 0.00 0.00 0.00 3.53
471 638 2.190578 CGCTCCATCCCCTCCAAC 59.809 66.667 0.00 0.00 0.00 3.77
472 639 2.597903 GCTCCATCCCCTCCAACC 59.402 66.667 0.00 0.00 0.00 3.77
473 640 2.911143 CTCCATCCCCTCCAACCG 59.089 66.667 0.00 0.00 0.00 4.44
474 641 3.406595 CTCCATCCCCTCCAACCGC 62.407 68.421 0.00 0.00 0.00 5.68
475 642 4.856801 CCATCCCCTCCAACCGCG 62.857 72.222 0.00 0.00 0.00 6.46
476 643 4.856801 CATCCCCTCCAACCGCGG 62.857 72.222 26.86 26.86 0.00 6.46
496 678 0.871722 CGCGAGAATCCACCAAACAA 59.128 50.000 0.00 0.00 0.00 2.83
533 715 0.322456 CAAAATCGCCCTCCAGACCA 60.322 55.000 0.00 0.00 0.00 4.02
584 766 4.717313 GCCGGCGGGAGAAACCTT 62.717 66.667 29.48 0.00 38.98 3.50
587 769 2.361230 GGCGGGAGAAACCTTGGG 60.361 66.667 0.00 0.00 38.98 4.12
591 773 2.754375 GGAGAAACCTTGGGCCGA 59.246 61.111 0.00 0.00 35.41 5.54
628 810 5.937492 ATCAATCAATGATTAGGGAGGGT 57.063 39.130 8.29 0.00 46.85 4.34
674 1101 2.983803 GCGAGAGAGAAATATTCGGAGC 59.016 50.000 0.00 0.00 34.02 4.70
742 1169 9.969001 GTATATATGGCATAAAGTTTAAGGGGA 57.031 33.333 11.86 0.00 0.00 4.81
753 1180 7.692460 AAAGTTTAAGGGGACGGTAAATAAG 57.308 36.000 0.00 0.00 30.73 1.73
849 1287 6.404954 GGGCGTTTTAATTTGATTAGGTGCTA 60.405 38.462 0.00 0.00 0.00 3.49
896 1334 1.140161 CGGTCGCCGTCAGGAATTA 59.860 57.895 9.69 0.00 42.73 1.40
899 1337 2.544277 CGGTCGCCGTCAGGAATTAATA 60.544 50.000 9.69 0.00 42.73 0.98
916 1355 1.027815 ATAAGGAGGGGGAGAGGTGT 58.972 55.000 0.00 0.00 0.00 4.16
924 1363 2.352032 GGGAGAGGTGTGACCCGAG 61.352 68.421 0.00 0.00 39.75 4.63
1083 1522 2.416747 CTTGACACTGCAGAATCGGAA 58.583 47.619 23.35 7.51 0.00 4.30
1170 1609 3.195591 CTCCCCGACGACATAGCCG 62.196 68.421 0.00 0.00 0.00 5.52
1207 1646 3.385384 CCAGGTGCGCCTCTCTCA 61.385 66.667 18.11 0.00 44.97 3.27
1208 1647 2.729479 CCAGGTGCGCCTCTCTCAT 61.729 63.158 18.11 0.00 44.97 2.90
1209 1648 1.227205 CAGGTGCGCCTCTCTCATC 60.227 63.158 18.11 0.00 44.97 2.92
1210 1649 2.279120 GGTGCGCCTCTCTCATCG 60.279 66.667 9.68 0.00 0.00 3.84
1212 1651 4.212913 TGCGCCTCTCTCATCGCC 62.213 66.667 4.18 0.00 46.14 5.54
1213 1652 4.959596 GCGCCTCTCTCATCGCCC 62.960 72.222 0.00 0.00 41.53 6.13
1222 1662 0.755698 TCTCATCGCCCCCTCTGTAC 60.756 60.000 0.00 0.00 0.00 2.90
1511 1951 2.550830 TTCTCTCTTGGGTTCACAGC 57.449 50.000 0.00 0.00 0.00 4.40
1516 1956 2.027745 TCTCTTGGGTTCACAGCTCATC 60.028 50.000 0.00 0.00 0.00 2.92
1656 2156 4.021456 AGTCGGTGTGTCATGTTAGATTCA 60.021 41.667 0.00 0.00 0.00 2.57
1691 2191 4.350368 TGTGAGGCTAATTTCACTGTCA 57.650 40.909 8.93 0.00 43.15 3.58
1693 2193 4.696877 TGTGAGGCTAATTTCACTGTCATG 59.303 41.667 8.93 0.00 43.15 3.07
1838 2381 4.729868 AGGTCCAATTTTTGTGTAGAGCT 58.270 39.130 0.00 0.00 0.00 4.09
1851 2394 1.272769 GTAGAGCTAATAGGCACCCCG 59.727 57.143 0.00 0.00 35.76 5.73
2289 2840 6.158598 TGAAGCTGAATGTTATTTGAAAGCC 58.841 36.000 0.00 0.00 0.00 4.35
2426 2977 7.053710 CATATTTGCATATACTGGTGAGTCG 57.946 40.000 0.00 0.00 33.21 4.18
2429 2980 2.758423 TGCATATACTGGTGAGTCGTGT 59.242 45.455 0.00 0.00 33.21 4.49
2452 3003 3.405831 TCCTGATGTTCTTGTTGAGCTG 58.594 45.455 0.00 0.00 0.00 4.24
2453 3004 2.095364 CCTGATGTTCTTGTTGAGCTGC 60.095 50.000 0.00 0.00 0.00 5.25
2690 3245 2.798145 CGTGTCACACTCTGTTGCACTA 60.798 50.000 6.33 0.00 33.24 2.74
2703 3258 1.795768 TGCACTAAGGTCAAGCTTCG 58.204 50.000 0.00 0.00 0.00 3.79
2752 3307 7.203218 GTCAAGTTTTGTTCTGGAAGCTTATT 58.797 34.615 0.00 0.00 0.00 1.40
2838 3583 9.524106 TTTGGTCATGTATAAACGTACTATGAG 57.476 33.333 0.00 0.00 30.33 2.90
2967 3760 5.854866 CACAACATATGTTCTTGCTTGAGTG 59.145 40.000 18.25 14.85 41.46 3.51
3010 3803 3.088532 TGCTCCTAAAATGCGGATTTGT 58.911 40.909 16.02 8.63 31.83 2.83
3176 3969 1.123077 ACTCACTGAGTTGGCTCACA 58.877 50.000 5.82 0.00 45.94 3.58
3242 4035 4.759782 CTGTCCATGAGGTATTTCGTCTT 58.240 43.478 0.00 0.00 35.89 3.01
3580 4390 7.072562 AGAGAATACATCATCCTACTTCAGGT 58.927 38.462 0.00 0.00 45.71 4.00
3678 4488 9.990360 TTTTTAAAACAAGATGGAAATACTCCC 57.010 29.630 0.00 0.00 44.69 4.30
3679 4489 8.950007 TTTAAAACAAGATGGAAATACTCCCT 57.050 30.769 0.00 0.00 44.69 4.20
3680 4490 8.575649 TTAAAACAAGATGGAAATACTCCCTC 57.424 34.615 0.00 0.00 44.69 4.30
3681 4491 4.779993 ACAAGATGGAAATACTCCCTCC 57.220 45.455 0.00 0.00 44.69 4.30
3682 4492 3.134804 ACAAGATGGAAATACTCCCTCCG 59.865 47.826 0.00 0.00 44.69 4.63
3683 4493 3.047695 AGATGGAAATACTCCCTCCGT 57.952 47.619 0.00 0.00 44.69 4.69
3684 4494 3.385115 AGATGGAAATACTCCCTCCGTT 58.615 45.455 0.00 0.00 44.69 4.44
3685 4495 3.388350 AGATGGAAATACTCCCTCCGTTC 59.612 47.826 0.00 0.00 44.69 3.95
3686 4496 1.835531 TGGAAATACTCCCTCCGTTCC 59.164 52.381 0.00 0.00 44.69 3.62
3687 4497 2.117051 GGAAATACTCCCTCCGTTCCT 58.883 52.381 0.00 0.00 38.44 3.36
3688 4498 3.303049 GGAAATACTCCCTCCGTTCCTA 58.697 50.000 0.00 0.00 38.44 2.94
3689 4499 3.708121 GGAAATACTCCCTCCGTTCCTAA 59.292 47.826 0.00 0.00 38.44 2.69
3690 4500 4.162888 GGAAATACTCCCTCCGTTCCTAAA 59.837 45.833 0.00 0.00 38.44 1.85
3691 4501 5.163227 GGAAATACTCCCTCCGTTCCTAAAT 60.163 44.000 0.00 0.00 38.44 1.40
3692 4502 4.957684 ATACTCCCTCCGTTCCTAAATG 57.042 45.455 0.00 0.00 0.00 2.32
3693 4503 2.547990 ACTCCCTCCGTTCCTAAATGT 58.452 47.619 0.00 0.00 0.00 2.71
3694 4504 3.716431 ACTCCCTCCGTTCCTAAATGTA 58.284 45.455 0.00 0.00 0.00 2.29
3695 4505 4.098894 ACTCCCTCCGTTCCTAAATGTAA 58.901 43.478 0.00 0.00 0.00 2.41
3696 4506 4.161754 ACTCCCTCCGTTCCTAAATGTAAG 59.838 45.833 0.00 0.00 0.00 2.34
3697 4507 4.098894 TCCCTCCGTTCCTAAATGTAAGT 58.901 43.478 0.00 0.00 0.00 2.24
3698 4508 4.161001 TCCCTCCGTTCCTAAATGTAAGTC 59.839 45.833 0.00 0.00 0.00 3.01
3699 4509 4.161754 CCCTCCGTTCCTAAATGTAAGTCT 59.838 45.833 0.00 0.00 0.00 3.24
3700 4510 5.338137 CCCTCCGTTCCTAAATGTAAGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
3701 4511 6.171213 CCTCCGTTCCTAAATGTAAGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
3702 4512 6.653740 CCTCCGTTCCTAAATGTAAGTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
3703 4513 7.174426 CCTCCGTTCCTAAATGTAAGTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
3704 4514 9.211485 CTCCGTTCCTAAATGTAAGTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
3705 4515 9.211485 TCCGTTCCTAAATGTAAGTCTTTTTAG 57.789 33.333 7.75 7.75 0.00 1.85
3706 4516 9.211485 CCGTTCCTAAATGTAAGTCTTTTTAGA 57.789 33.333 13.43 2.40 0.00 2.10
3728 4538 7.876936 AGAGATTTCAATATGAACTGCATGT 57.123 32.000 0.00 0.00 35.89 3.21
3729 4539 7.704271 AGAGATTTCAATATGAACTGCATGTG 58.296 34.615 0.00 0.00 35.89 3.21
3730 4540 6.802608 AGATTTCAATATGAACTGCATGTGG 58.197 36.000 0.00 0.00 35.89 4.17
3731 4541 6.604396 AGATTTCAATATGAACTGCATGTGGA 59.396 34.615 0.00 0.00 35.89 4.02
3732 4542 6.778834 TTTCAATATGAACTGCATGTGGAT 57.221 33.333 0.00 0.00 35.89 3.41
3733 4543 5.761165 TCAATATGAACTGCATGTGGATG 57.239 39.130 0.00 0.00 37.87 3.51
3734 4544 5.195185 TCAATATGAACTGCATGTGGATGT 58.805 37.500 0.00 0.00 37.87 3.06
3735 4545 6.355747 TCAATATGAACTGCATGTGGATGTA 58.644 36.000 0.00 0.00 37.87 2.29
3736 4546 6.260714 TCAATATGAACTGCATGTGGATGTAC 59.739 38.462 0.00 0.00 37.87 2.90
3737 4547 3.415457 TGAACTGCATGTGGATGTACA 57.585 42.857 0.00 0.00 34.63 2.90
3738 4548 3.954200 TGAACTGCATGTGGATGTACAT 58.046 40.909 8.43 8.43 41.77 2.29
3739 4549 5.096443 TGAACTGCATGTGGATGTACATA 57.904 39.130 8.71 0.00 39.17 2.29
3740 4550 5.118286 TGAACTGCATGTGGATGTACATAG 58.882 41.667 8.71 2.38 39.17 2.23
3741 4551 5.104982 TGAACTGCATGTGGATGTACATAGA 60.105 40.000 8.71 0.00 39.17 1.98
3742 4552 4.697514 ACTGCATGTGGATGTACATAGAC 58.302 43.478 8.71 8.89 39.17 2.59
3743 4553 4.162131 ACTGCATGTGGATGTACATAGACA 59.838 41.667 17.45 17.45 39.17 3.41
3744 4554 5.163269 ACTGCATGTGGATGTACATAGACAT 60.163 40.000 19.60 19.60 42.82 3.06
3745 4555 6.041979 ACTGCATGTGGATGTACATAGACATA 59.958 38.462 22.69 15.12 40.18 2.29
3746 4556 7.008021 TGCATGTGGATGTACATAGACATAT 57.992 36.000 22.69 16.27 40.18 1.78
3747 4557 7.452562 TGCATGTGGATGTACATAGACATATT 58.547 34.615 22.69 8.05 40.18 1.28
3748 4558 7.938490 TGCATGTGGATGTACATAGACATATTT 59.062 33.333 22.69 7.79 40.18 1.40
3749 4559 8.786898 GCATGTGGATGTACATAGACATATTTT 58.213 33.333 22.69 7.52 40.18 1.82
3772 4582 7.849804 TTAGAGGTAGATTCACTCATTTTGC 57.150 36.000 0.00 0.00 33.76 3.68
3773 4583 6.059787 AGAGGTAGATTCACTCATTTTGCT 57.940 37.500 0.00 0.00 33.76 3.91
3774 4584 6.112058 AGAGGTAGATTCACTCATTTTGCTC 58.888 40.000 0.00 0.00 33.76 4.26
3775 4585 5.809001 AGGTAGATTCACTCATTTTGCTCA 58.191 37.500 0.00 0.00 0.00 4.26
3776 4586 6.240894 AGGTAGATTCACTCATTTTGCTCAA 58.759 36.000 0.00 0.00 0.00 3.02
3777 4587 6.150140 AGGTAGATTCACTCATTTTGCTCAAC 59.850 38.462 0.00 0.00 0.00 3.18
3778 4588 5.382618 AGATTCACTCATTTTGCTCAACC 57.617 39.130 0.00 0.00 0.00 3.77
3779 4589 5.075493 AGATTCACTCATTTTGCTCAACCT 58.925 37.500 0.00 0.00 0.00 3.50
3780 4590 4.836125 TTCACTCATTTTGCTCAACCTC 57.164 40.909 0.00 0.00 0.00 3.85
3781 4591 4.090761 TCACTCATTTTGCTCAACCTCT 57.909 40.909 0.00 0.00 0.00 3.69
3782 4592 5.227569 TCACTCATTTTGCTCAACCTCTA 57.772 39.130 0.00 0.00 0.00 2.43
3783 4593 5.620206 TCACTCATTTTGCTCAACCTCTAA 58.380 37.500 0.00 0.00 0.00 2.10
3784 4594 6.061441 TCACTCATTTTGCTCAACCTCTAAA 58.939 36.000 0.00 0.00 0.00 1.85
3785 4595 6.545666 TCACTCATTTTGCTCAACCTCTAAAA 59.454 34.615 0.00 0.00 0.00 1.52
3786 4596 7.068103 TCACTCATTTTGCTCAACCTCTAAAAA 59.932 33.333 0.00 0.00 0.00 1.94
3809 4619 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3810 4620 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3811 4621 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3812 4622 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3940 4752 8.762426 AGTTAAAAGCTTTTACTGAGTACTTCG 58.238 33.333 27.22 0.00 32.77 3.79
3956 4768 2.635915 ACTTCGTCCATCTGGGTTTACA 59.364 45.455 0.00 0.00 38.11 2.41
4013 4825 8.810652 TTTGTATGTAAAAGAGATTTTGCACC 57.189 30.769 6.42 2.62 38.85 5.01
4138 4951 7.448748 AGACTTGTTACATGGGAATTTGTAC 57.551 36.000 0.00 0.00 0.00 2.90
4150 4963 0.519961 ATTTGTACAACGCCGCCTTC 59.480 50.000 8.07 0.00 0.00 3.46
4227 5042 9.927668 AATCAGACTTTTCAGTTTCAAGAAAAA 57.072 25.926 0.00 0.00 41.55 1.94
4254 5069 5.366829 AAAAATTTACTCCCTTCGTTCGG 57.633 39.130 0.00 0.00 0.00 4.30
4255 5070 3.967332 AATTTACTCCCTTCGTTCGGA 57.033 42.857 0.00 0.00 0.00 4.55
4256 5071 3.967332 ATTTACTCCCTTCGTTCGGAA 57.033 42.857 0.00 0.00 0.00 4.30
4257 5072 3.967332 TTTACTCCCTTCGTTCGGAAT 57.033 42.857 0.00 0.00 33.26 3.01
4258 5073 3.967332 TTACTCCCTTCGTTCGGAATT 57.033 42.857 0.00 0.00 33.26 2.17
4259 5074 5.404466 TTTACTCCCTTCGTTCGGAATTA 57.596 39.130 0.00 0.00 33.26 1.40
4260 5075 3.242549 ACTCCCTTCGTTCGGAATTAC 57.757 47.619 0.00 0.00 33.26 1.89
4261 5076 2.830321 ACTCCCTTCGTTCGGAATTACT 59.170 45.455 0.00 0.00 33.26 2.24
4262 5077 3.260128 ACTCCCTTCGTTCGGAATTACTT 59.740 43.478 0.00 0.00 33.26 2.24
4263 5078 3.853475 TCCCTTCGTTCGGAATTACTTC 58.147 45.455 0.00 0.00 33.26 3.01
4264 5079 3.512724 TCCCTTCGTTCGGAATTACTTCT 59.487 43.478 0.00 0.00 33.26 2.85
4265 5080 4.020839 TCCCTTCGTTCGGAATTACTTCTT 60.021 41.667 0.00 0.00 33.26 2.52
4266 5081 4.092968 CCCTTCGTTCGGAATTACTTCTTG 59.907 45.833 0.00 0.00 33.26 3.02
4267 5082 4.689345 CCTTCGTTCGGAATTACTTCTTGT 59.311 41.667 0.00 0.00 33.26 3.16
4268 5083 5.865552 CCTTCGTTCGGAATTACTTCTTGTA 59.134 40.000 0.00 0.00 33.26 2.41
4269 5084 6.034683 CCTTCGTTCGGAATTACTTCTTGTAG 59.965 42.308 0.00 0.00 33.26 2.74
4270 5085 6.258230 TCGTTCGGAATTACTTCTTGTAGA 57.742 37.500 0.00 0.00 32.08 2.59
4271 5086 6.680810 TCGTTCGGAATTACTTCTTGTAGAA 58.319 36.000 0.00 0.00 32.50 2.10
4272 5087 7.147312 TCGTTCGGAATTACTTCTTGTAGAAA 58.853 34.615 0.00 0.00 33.19 2.52
4273 5088 7.816031 TCGTTCGGAATTACTTCTTGTAGAAAT 59.184 33.333 0.00 0.00 33.19 2.17
4274 5089 7.898309 CGTTCGGAATTACTTCTTGTAGAAATG 59.102 37.037 0.00 0.00 33.19 2.32
4275 5090 7.843490 TCGGAATTACTTCTTGTAGAAATGG 57.157 36.000 0.00 0.00 33.19 3.16
4276 5091 7.617225 TCGGAATTACTTCTTGTAGAAATGGA 58.383 34.615 0.00 0.00 33.19 3.41
4277 5092 8.265055 TCGGAATTACTTCTTGTAGAAATGGAT 58.735 33.333 0.00 0.00 33.19 3.41
4278 5093 8.338259 CGGAATTACTTCTTGTAGAAATGGATG 58.662 37.037 0.00 0.00 33.19 3.51
4279 5094 9.178758 GGAATTACTTCTTGTAGAAATGGATGT 57.821 33.333 0.00 0.00 33.19 3.06
4290 5105 8.768501 TGTAGAAATGGATGTATCTAGACACT 57.231 34.615 2.29 0.00 30.52 3.55
4373 5189 4.694037 AGTTCATCTTTAAGGTTACGGCAC 59.306 41.667 0.00 0.00 0.00 5.01
4407 5229 9.754382 CTTAATTAATAAAGCATGCATTGAGGT 57.246 29.630 21.98 4.17 0.00 3.85
4419 5241 6.392354 CATGCATTGAGGTCAAATTGTTACT 58.608 36.000 0.00 0.00 39.55 2.24
4420 5242 7.537715 CATGCATTGAGGTCAAATTGTTACTA 58.462 34.615 0.00 0.00 39.55 1.82
4421 5243 6.908825 TGCATTGAGGTCAAATTGTTACTAC 58.091 36.000 0.00 0.00 39.55 2.73
4422 5244 6.714810 TGCATTGAGGTCAAATTGTTACTACT 59.285 34.615 0.00 0.00 39.55 2.57
4423 5245 7.094805 TGCATTGAGGTCAAATTGTTACTACTC 60.095 37.037 0.00 0.00 39.55 2.59
4424 5246 7.626452 GCATTGAGGTCAAATTGTTACTACTCC 60.626 40.741 0.00 0.00 39.55 3.85
4425 5247 5.801380 TGAGGTCAAATTGTTACTACTCCC 58.199 41.667 0.00 0.00 0.00 4.30
4426 5248 5.546499 TGAGGTCAAATTGTTACTACTCCCT 59.454 40.000 0.00 0.00 0.00 4.20
4427 5249 6.051179 AGGTCAAATTGTTACTACTCCCTC 57.949 41.667 0.00 0.00 0.00 4.30
4428 5250 5.045797 AGGTCAAATTGTTACTACTCCCTCC 60.046 44.000 0.00 0.00 0.00 4.30
4429 5251 4.868734 GTCAAATTGTTACTACTCCCTCCG 59.131 45.833 0.00 0.00 0.00 4.63
4430 5252 4.529377 TCAAATTGTTACTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
4431 5253 5.012354 TCAAATTGTTACTACTCCCTCCGTT 59.988 40.000 0.00 0.00 0.00 4.44
4432 5254 4.732672 ATTGTTACTACTCCCTCCGTTC 57.267 45.455 0.00 0.00 0.00 3.95
4433 5255 3.159213 TGTTACTACTCCCTCCGTTCA 57.841 47.619 0.00 0.00 0.00 3.18
4434 5256 3.705051 TGTTACTACTCCCTCCGTTCAT 58.295 45.455 0.00 0.00 0.00 2.57
4435 5257 4.091549 TGTTACTACTCCCTCCGTTCATT 58.908 43.478 0.00 0.00 0.00 2.57
4436 5258 4.529377 TGTTACTACTCCCTCCGTTCATTT 59.471 41.667 0.00 0.00 0.00 2.32
4437 5259 5.012354 TGTTACTACTCCCTCCGTTCATTTT 59.988 40.000 0.00 0.00 0.00 1.82
4438 5260 4.635699 ACTACTCCCTCCGTTCATTTTT 57.364 40.909 0.00 0.00 0.00 1.94
4439 5261 5.750352 ACTACTCCCTCCGTTCATTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
4440 5262 6.117975 ACTACTCCCTCCGTTCATTTTTAA 57.882 37.500 0.00 0.00 0.00 1.52
4441 5263 6.718294 ACTACTCCCTCCGTTCATTTTTAAT 58.282 36.000 0.00 0.00 0.00 1.40
4442 5264 7.854337 ACTACTCCCTCCGTTCATTTTTAATA 58.146 34.615 0.00 0.00 0.00 0.98
4443 5265 8.491958 ACTACTCCCTCCGTTCATTTTTAATAT 58.508 33.333 0.00 0.00 0.00 1.28
4444 5266 9.991906 CTACTCCCTCCGTTCATTTTTAATATA 57.008 33.333 0.00 0.00 0.00 0.86
4446 5268 9.338622 ACTCCCTCCGTTCATTTTTAATATAAG 57.661 33.333 0.00 0.00 0.00 1.73
4447 5269 9.555727 CTCCCTCCGTTCATTTTTAATATAAGA 57.444 33.333 0.00 0.00 0.00 2.10
4448 5270 9.333724 TCCCTCCGTTCATTTTTAATATAAGAC 57.666 33.333 0.00 0.00 0.00 3.01
4449 5271 8.280497 CCCTCCGTTCATTTTTAATATAAGACG 58.720 37.037 0.00 0.00 0.00 4.18
4450 5272 8.823818 CCTCCGTTCATTTTTAATATAAGACGT 58.176 33.333 0.00 0.00 0.00 4.34
4467 5289 6.870971 AAGACGTTTTAGGCATTTAAGACA 57.129 33.333 0.00 0.00 0.00 3.41
4468 5290 6.870971 AGACGTTTTAGGCATTTAAGACAA 57.129 33.333 0.00 0.00 0.00 3.18
4469 5291 6.665465 AGACGTTTTAGGCATTTAAGACAAC 58.335 36.000 0.00 0.00 0.00 3.32
4470 5292 6.261381 AGACGTTTTAGGCATTTAAGACAACA 59.739 34.615 0.00 0.00 0.00 3.33
4471 5293 6.203647 ACGTTTTAGGCATTTAAGACAACAC 58.796 36.000 0.00 0.00 0.00 3.32
4472 5294 6.038936 ACGTTTTAGGCATTTAAGACAACACT 59.961 34.615 0.00 0.00 0.00 3.55
4473 5295 6.915843 CGTTTTAGGCATTTAAGACAACACTT 59.084 34.615 0.00 0.00 0.00 3.16
4474 5296 8.071368 CGTTTTAGGCATTTAAGACAACACTTA 58.929 33.333 0.00 0.00 0.00 2.24
4475 5297 9.738832 GTTTTAGGCATTTAAGACAACACTTAA 57.261 29.630 0.00 0.00 39.54 1.85
4485 5307 9.834628 TTTAAGACAACACTTAAAACAGTTCAG 57.165 29.630 0.00 0.00 44.16 3.02
4486 5308 7.448748 AAGACAACACTTAAAACAGTTCAGT 57.551 32.000 0.00 0.00 0.00 3.41
4487 5309 7.448748 AGACAACACTTAAAACAGTTCAGTT 57.551 32.000 0.00 0.00 0.00 3.16
4488 5310 7.882179 AGACAACACTTAAAACAGTTCAGTTT 58.118 30.769 0.00 0.00 43.13 2.66
4489 5311 8.021396 AGACAACACTTAAAACAGTTCAGTTTC 58.979 33.333 0.00 0.00 40.60 2.78
4490 5312 7.653647 ACAACACTTAAAACAGTTCAGTTTCA 58.346 30.769 0.00 0.00 40.60 2.69
4491 5313 7.807907 ACAACACTTAAAACAGTTCAGTTTCAG 59.192 33.333 0.00 0.00 40.60 3.02
4492 5314 6.322491 ACACTTAAAACAGTTCAGTTTCAGC 58.678 36.000 0.00 0.00 40.60 4.26
4493 5315 6.151144 ACACTTAAAACAGTTCAGTTTCAGCT 59.849 34.615 0.00 0.00 40.60 4.24
4494 5316 6.470235 CACTTAAAACAGTTCAGTTTCAGCTG 59.530 38.462 7.63 7.63 40.60 4.24
4495 5317 6.151144 ACTTAAAACAGTTCAGTTTCAGCTGT 59.849 34.615 14.67 0.00 40.60 4.40
4496 5318 4.622701 AAACAGTTCAGTTTCAGCTGTC 57.377 40.909 14.67 5.94 39.19 3.51
4497 5319 3.550437 ACAGTTCAGTTTCAGCTGTCT 57.450 42.857 14.67 8.20 35.78 3.41
4498 5320 4.672587 ACAGTTCAGTTTCAGCTGTCTA 57.327 40.909 14.67 0.00 35.78 2.59
4499 5321 5.023533 ACAGTTCAGTTTCAGCTGTCTAA 57.976 39.130 14.67 4.15 35.78 2.10
4500 5322 5.428253 ACAGTTCAGTTTCAGCTGTCTAAA 58.572 37.500 14.67 4.16 35.78 1.85
4501 5323 5.880332 ACAGTTCAGTTTCAGCTGTCTAAAA 59.120 36.000 14.67 3.76 35.78 1.52
4502 5324 6.183360 ACAGTTCAGTTTCAGCTGTCTAAAAC 60.183 38.462 14.67 16.02 35.78 2.43
4503 5325 5.006746 AGTTCAGTTTCAGCTGTCTAAAACG 59.993 40.000 14.67 12.27 36.86 3.60
4504 5326 4.439057 TCAGTTTCAGCTGTCTAAAACGT 58.561 39.130 14.67 4.63 36.86 3.99
4505 5327 4.873827 TCAGTTTCAGCTGTCTAAAACGTT 59.126 37.500 14.67 0.00 36.86 3.99
4506 5328 5.353123 TCAGTTTCAGCTGTCTAAAACGTTT 59.647 36.000 14.67 7.96 36.86 3.60
4507 5329 6.027749 CAGTTTCAGCTGTCTAAAACGTTTT 58.972 36.000 27.65 27.65 36.86 2.43
4508 5330 7.064847 TCAGTTTCAGCTGTCTAAAACGTTTTA 59.935 33.333 26.99 26.99 36.86 1.52
4509 5331 7.163682 CAGTTTCAGCTGTCTAAAACGTTTTAC 59.836 37.037 25.60 20.67 36.86 2.01
4510 5332 6.665474 TTCAGCTGTCTAAAACGTTTTACA 57.335 33.333 25.60 23.51 0.00 2.41
4511 5333 6.665474 TCAGCTGTCTAAAACGTTTTACAA 57.335 33.333 25.60 15.65 0.00 2.41
4512 5334 7.074507 TCAGCTGTCTAAAACGTTTTACAAA 57.925 32.000 25.60 12.89 0.00 2.83
4513 5335 7.528307 TCAGCTGTCTAAAACGTTTTACAAAA 58.472 30.769 25.60 13.17 0.00 2.44
4514 5336 8.021973 TCAGCTGTCTAAAACGTTTTACAAAAA 58.978 29.630 25.60 9.93 0.00 1.94
4515 5337 8.803799 CAGCTGTCTAAAACGTTTTACAAAAAT 58.196 29.630 25.60 10.88 0.00 1.82
4516 5338 8.803799 AGCTGTCTAAAACGTTTTACAAAAATG 58.196 29.630 25.60 15.76 0.00 2.32
4517 5339 8.800031 GCTGTCTAAAACGTTTTACAAAAATGA 58.200 29.630 25.60 17.48 0.00 2.57
4524 5346 6.806120 ACGTTTTACAAAAATGAACAGAGC 57.194 33.333 10.46 0.00 0.00 4.09
4525 5347 5.454232 ACGTTTTACAAAAATGAACAGAGCG 59.546 36.000 10.46 0.00 0.00 5.03
4526 5348 5.679355 CGTTTTACAAAAATGAACAGAGCGA 59.321 36.000 0.00 0.00 0.00 4.93
4527 5349 6.129717 CGTTTTACAAAAATGAACAGAGCGAG 60.130 38.462 0.00 0.00 0.00 5.03
4528 5350 6.371809 TTTACAAAAATGAACAGAGCGAGT 57.628 33.333 0.00 0.00 0.00 4.18
4529 5351 7.485418 TTTACAAAAATGAACAGAGCGAGTA 57.515 32.000 0.00 0.00 0.00 2.59
4530 5352 7.485418 TTACAAAAATGAACAGAGCGAGTAA 57.515 32.000 0.00 0.00 0.00 2.24
4531 5353 6.560253 ACAAAAATGAACAGAGCGAGTAAT 57.440 33.333 0.00 0.00 0.00 1.89
4532 5354 7.667043 ACAAAAATGAACAGAGCGAGTAATA 57.333 32.000 0.00 0.00 0.00 0.98
4533 5355 7.519002 ACAAAAATGAACAGAGCGAGTAATAC 58.481 34.615 0.00 0.00 0.00 1.89
4534 5356 7.172532 ACAAAAATGAACAGAGCGAGTAATACA 59.827 33.333 0.00 0.00 0.00 2.29
4535 5357 7.849804 AAAATGAACAGAGCGAGTAATACAT 57.150 32.000 0.00 0.00 0.00 2.29
4536 5358 7.849804 AAATGAACAGAGCGAGTAATACATT 57.150 32.000 0.00 0.00 0.00 2.71
4537 5359 7.470289 AATGAACAGAGCGAGTAATACATTC 57.530 36.000 0.00 0.00 0.00 2.67
4538 5360 6.208988 TGAACAGAGCGAGTAATACATTCT 57.791 37.500 0.00 0.00 0.00 2.40
4539 5361 7.329588 TGAACAGAGCGAGTAATACATTCTA 57.670 36.000 0.00 0.00 0.00 2.10
4540 5362 7.418408 TGAACAGAGCGAGTAATACATTCTAG 58.582 38.462 0.00 0.00 0.00 2.43
4541 5363 7.282450 TGAACAGAGCGAGTAATACATTCTAGA 59.718 37.037 0.00 0.00 0.00 2.43
4542 5364 7.569639 ACAGAGCGAGTAATACATTCTAGAA 57.430 36.000 7.82 7.82 0.00 2.10
4543 5365 7.644490 ACAGAGCGAGTAATACATTCTAGAAG 58.356 38.462 11.53 5.93 0.00 2.85
4544 5366 7.283580 ACAGAGCGAGTAATACATTCTAGAAGT 59.716 37.037 11.53 11.16 0.00 3.01
4545 5367 7.589587 CAGAGCGAGTAATACATTCTAGAAGTG 59.410 40.741 11.53 11.33 0.00 3.16
4546 5368 6.740110 AGCGAGTAATACATTCTAGAAGTGG 58.260 40.000 11.53 5.76 0.00 4.00
4547 5369 6.546403 AGCGAGTAATACATTCTAGAAGTGGA 59.454 38.462 11.53 6.78 0.00 4.02
4548 5370 7.068348 AGCGAGTAATACATTCTAGAAGTGGAA 59.932 37.037 11.53 3.77 0.00 3.53
4549 5371 7.705325 GCGAGTAATACATTCTAGAAGTGGAAA 59.295 37.037 11.53 1.70 0.00 3.13
4550 5372 9.582431 CGAGTAATACATTCTAGAAGTGGAAAA 57.418 33.333 11.53 0.00 0.00 2.29
4555 5377 9.739276 AATACATTCTAGAAGTGGAAAACATGA 57.261 29.630 11.53 0.00 0.00 3.07
4556 5378 7.440523 ACATTCTAGAAGTGGAAAACATGAC 57.559 36.000 11.53 0.00 0.00 3.06
4557 5379 6.998074 ACATTCTAGAAGTGGAAAACATGACA 59.002 34.615 11.53 0.00 0.00 3.58
4558 5380 6.861065 TTCTAGAAGTGGAAAACATGACAC 57.139 37.500 0.00 0.52 0.00 3.67
4559 5381 6.174720 TCTAGAAGTGGAAAACATGACACT 57.825 37.500 0.00 2.96 45.34 3.55
4560 5382 5.991606 TCTAGAAGTGGAAAACATGACACTG 59.008 40.000 0.00 0.00 42.85 3.66
4561 5383 3.316308 AGAAGTGGAAAACATGACACTGC 59.684 43.478 0.00 4.59 42.85 4.40
4562 5384 2.653726 AGTGGAAAACATGACACTGCA 58.346 42.857 0.00 0.00 42.14 4.41
4563 5385 2.620115 AGTGGAAAACATGACACTGCAG 59.380 45.455 13.48 13.48 42.14 4.41
4564 5386 2.618241 GTGGAAAACATGACACTGCAGA 59.382 45.455 23.35 0.00 0.00 4.26
4565 5387 3.066621 GTGGAAAACATGACACTGCAGAA 59.933 43.478 23.35 2.98 0.00 3.02
4566 5388 3.698539 TGGAAAACATGACACTGCAGAAA 59.301 39.130 23.35 2.58 0.00 2.52
4567 5389 4.159321 TGGAAAACATGACACTGCAGAAAA 59.841 37.500 23.35 2.97 0.00 2.29
4568 5390 4.504097 GGAAAACATGACACTGCAGAAAAC 59.496 41.667 23.35 9.18 0.00 2.43
4569 5391 4.989279 AAACATGACACTGCAGAAAACT 57.011 36.364 23.35 0.00 0.00 2.66
4570 5392 6.449635 AAAACATGACACTGCAGAAAACTA 57.550 33.333 23.35 1.54 0.00 2.24
4571 5393 6.639632 AAACATGACACTGCAGAAAACTAT 57.360 33.333 23.35 4.00 0.00 2.12
4572 5394 7.744087 AAACATGACACTGCAGAAAACTATA 57.256 32.000 23.35 0.00 0.00 1.31
4573 5395 6.727824 ACATGACACTGCAGAAAACTATAC 57.272 37.500 23.35 1.83 0.00 1.47
4574 5396 6.230472 ACATGACACTGCAGAAAACTATACA 58.770 36.000 23.35 7.29 0.00 2.29
4575 5397 6.710295 ACATGACACTGCAGAAAACTATACAA 59.290 34.615 23.35 0.00 0.00 2.41
4576 5398 7.228507 ACATGACACTGCAGAAAACTATACAAA 59.771 33.333 23.35 0.00 0.00 2.83
4577 5399 7.561021 TGACACTGCAGAAAACTATACAAAA 57.439 32.000 23.35 0.00 0.00 2.44
4578 5400 7.990917 TGACACTGCAGAAAACTATACAAAAA 58.009 30.769 23.35 0.00 0.00 1.94
4602 5424 9.817809 AAAAGGAAGGAAATTTTGAAACTACTC 57.182 29.630 0.00 0.00 0.00 2.59
4603 5425 7.526142 AGGAAGGAAATTTTGAAACTACTCC 57.474 36.000 0.00 0.00 0.00 3.85
4604 5426 6.493802 AGGAAGGAAATTTTGAAACTACTCCC 59.506 38.462 0.00 0.00 0.00 4.30
4605 5427 6.493802 GGAAGGAAATTTTGAAACTACTCCCT 59.506 38.462 0.00 0.00 0.00 4.20
4606 5428 7.309255 GGAAGGAAATTTTGAAACTACTCCCTC 60.309 40.741 0.00 0.00 0.00 4.30
4607 5429 6.010850 AGGAAATTTTGAAACTACTCCCTCC 58.989 40.000 0.00 0.00 0.00 4.30
4608 5430 5.106277 GGAAATTTTGAAACTACTCCCTCCG 60.106 44.000 0.00 0.00 0.00 4.63
4609 5431 4.635699 ATTTTGAAACTACTCCCTCCGT 57.364 40.909 0.00 0.00 0.00 4.69
4610 5432 4.426736 TTTTGAAACTACTCCCTCCGTT 57.573 40.909 0.00 0.00 0.00 4.44
4611 5433 3.672767 TTGAAACTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
4612 5434 1.897802 TGAAACTACTCCCTCCGTTCC 59.102 52.381 0.00 0.00 0.00 3.62
4613 5435 2.177734 GAAACTACTCCCTCCGTTCCT 58.822 52.381 0.00 0.00 0.00 3.36
4614 5436 3.245371 TGAAACTACTCCCTCCGTTCCTA 60.245 47.826 0.00 0.00 0.00 2.94
4615 5437 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4616 5438 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4617 5439 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4618 5440 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4619 5441 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4620 5442 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4621 5443 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4622 5444 6.323210 ACTCCCTCCGTTCCTAAATATTTT 57.677 37.500 5.91 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
101 102 5.039333 GCATTCTTGTATTCTCATGTTGGC 58.961 41.667 0.00 0.00 0.00 4.52
133 134 3.395639 GTTTTATACCGGGCATGATCGA 58.604 45.455 6.32 0.00 0.00 3.59
134 135 2.482721 GGTTTTATACCGGGCATGATCG 59.517 50.000 6.32 0.00 37.12 3.69
151 154 3.629087 TCTAAGCCTAGCTACTCGGTTT 58.371 45.455 5.21 5.21 38.25 3.27
169 172 6.378280 TCAAGACATACTCTGCAGTGATTCTA 59.622 38.462 21.96 4.69 33.62 2.10
177 180 4.993584 ACAAGTTCAAGACATACTCTGCAG 59.006 41.667 7.63 7.63 0.00 4.41
189 192 9.005777 AGCCGTTATTTAATTACAAGTTCAAGA 57.994 29.630 0.00 0.00 0.00 3.02
191 194 8.024285 CCAGCCGTTATTTAATTACAAGTTCAA 58.976 33.333 0.00 0.00 0.00 2.69
201 368 6.837471 TTACCAACCAGCCGTTATTTAATT 57.163 33.333 0.00 0.00 31.77 1.40
204 371 4.641094 CCATTACCAACCAGCCGTTATTTA 59.359 41.667 0.00 0.00 31.77 1.40
208 375 1.951424 GCCATTACCAACCAGCCGTTA 60.951 52.381 0.00 0.00 31.77 3.18
221 388 2.109425 AGGAACCAGAACGCCATTAC 57.891 50.000 0.00 0.00 0.00 1.89
234 401 4.766375 TGTTCAGGAATCGATTAGGAACC 58.234 43.478 28.01 19.19 33.95 3.62
294 461 1.531602 GAACCTGCCCTGTTTGCCT 60.532 57.895 0.00 0.00 0.00 4.75
337 504 3.484407 ACCGTCATCCGCTATAGTTACT 58.516 45.455 0.84 0.00 34.38 2.24
338 505 3.911661 ACCGTCATCCGCTATAGTTAC 57.088 47.619 0.84 0.00 34.38 2.50
339 506 6.579666 AAATACCGTCATCCGCTATAGTTA 57.420 37.500 0.84 0.00 34.38 2.24
340 507 5.464030 AAATACCGTCATCCGCTATAGTT 57.536 39.130 0.84 0.00 34.38 2.24
341 508 5.464030 AAAATACCGTCATCCGCTATAGT 57.536 39.130 0.84 0.00 34.38 2.12
342 509 4.863131 GGAAAATACCGTCATCCGCTATAG 59.137 45.833 0.00 0.00 34.38 1.31
343 510 4.322198 GGGAAAATACCGTCATCCGCTATA 60.322 45.833 0.00 0.00 34.38 1.31
474 641 4.812476 TGGTGGATTCTCGCGCCG 62.812 66.667 0.00 0.00 0.00 6.46
475 642 2.038269 TTTGGTGGATTCTCGCGCC 61.038 57.895 0.00 0.00 0.00 6.53
476 643 1.134694 GTTTGGTGGATTCTCGCGC 59.865 57.895 0.00 0.00 0.00 6.86
477 644 0.871722 TTGTTTGGTGGATTCTCGCG 59.128 50.000 0.00 0.00 0.00 5.87
478 645 2.607038 GGTTTGTTTGGTGGATTCTCGC 60.607 50.000 0.00 0.00 0.00 5.03
479 646 2.350388 CGGTTTGTTTGGTGGATTCTCG 60.350 50.000 0.00 0.00 0.00 4.04
480 647 2.882137 TCGGTTTGTTTGGTGGATTCTC 59.118 45.455 0.00 0.00 0.00 2.87
481 648 2.884639 CTCGGTTTGTTTGGTGGATTCT 59.115 45.455 0.00 0.00 0.00 2.40
482 649 2.607038 GCTCGGTTTGTTTGGTGGATTC 60.607 50.000 0.00 0.00 0.00 2.52
483 650 1.339929 GCTCGGTTTGTTTGGTGGATT 59.660 47.619 0.00 0.00 0.00 3.01
519 701 1.306141 AATCTGGTCTGGAGGGCGA 60.306 57.895 0.00 0.00 0.00 5.54
533 715 2.185350 CGCCCGCAGACAGAATCT 59.815 61.111 0.00 0.00 38.66 2.40
591 773 1.971505 TTGATTGCCCCTCGCTCGAT 61.972 55.000 0.00 0.00 38.78 3.59
674 1101 0.959372 CTTGCCCTGCACTTCTCCTG 60.959 60.000 0.00 0.00 38.71 3.86
753 1180 9.968743 CCGCGGATTATTTTACTCTATTTTATC 57.031 33.333 24.07 0.00 0.00 1.75
889 1327 5.166407 CTCTCCCCCTCCTTATTAATTCCT 58.834 45.833 0.00 0.00 0.00 3.36
896 1334 1.369983 ACACCTCTCCCCCTCCTTATT 59.630 52.381 0.00 0.00 0.00 1.40
899 1337 1.229658 CACACCTCTCCCCCTCCTT 60.230 63.158 0.00 0.00 0.00 3.36
916 1355 1.753078 CGGATCTGTCCTCGGGTCA 60.753 63.158 0.00 0.00 42.73 4.02
924 1363 1.142748 CTCTGTGGCGGATCTGTCC 59.857 63.158 3.10 5.90 41.40 4.02
968 1407 4.760047 CACGTGGAGGAAGGGCCG 62.760 72.222 7.95 0.00 43.43 6.13
1083 1522 1.383248 CGATTCCCCTCCCCTCTGT 60.383 63.158 0.00 0.00 0.00 3.41
1207 1646 2.044806 GCATGTACAGAGGGGGCGAT 62.045 60.000 0.33 0.00 0.00 4.58
1208 1647 2.731571 GCATGTACAGAGGGGGCGA 61.732 63.158 0.33 0.00 0.00 5.54
1209 1648 2.203070 GCATGTACAGAGGGGGCG 60.203 66.667 0.33 0.00 0.00 6.13
1210 1649 1.682451 TACGCATGTACAGAGGGGGC 61.682 60.000 16.15 6.32 0.00 5.80
1212 1651 0.249489 GCTACGCATGTACAGAGGGG 60.249 60.000 16.15 11.85 0.00 4.79
1213 1652 0.747255 AGCTACGCATGTACAGAGGG 59.253 55.000 0.33 7.61 0.00 4.30
1244 1684 0.245266 TCAACGAGCGAGCCACATAA 59.755 50.000 0.00 0.00 0.00 1.90
1486 1926 5.003804 TGTGAACCCAAGAGAGAAATAAGC 58.996 41.667 0.00 0.00 0.00 3.09
1494 1934 1.345741 TGAGCTGTGAACCCAAGAGAG 59.654 52.381 0.00 0.00 0.00 3.20
1511 1951 0.323178 AGTGCCCAAAGCCAGATGAG 60.323 55.000 0.00 0.00 42.71 2.90
1516 1956 0.539438 TACCAAGTGCCCAAAGCCAG 60.539 55.000 0.00 0.00 42.71 4.85
1656 2156 2.775890 CCTCACATCAGTTTCTGCACT 58.224 47.619 0.00 0.00 0.00 4.40
1691 2191 7.391148 ACAAAATAATTCCTAGTTGACGCAT 57.609 32.000 0.00 0.00 0.00 4.73
1693 2193 5.957796 CGACAAAATAATTCCTAGTTGACGC 59.042 40.000 0.00 0.00 0.00 5.19
1759 2301 6.483640 TCTTTCCTCTAAAAGAGCAAAGACAC 59.516 38.462 15.73 0.00 46.56 3.67
1838 2381 0.547553 GAAACCCGGGGTGCCTATTA 59.452 55.000 27.92 0.00 35.34 0.98
2134 2685 4.754322 AGTTACACCAAAAAGCAAGGTTG 58.246 39.130 0.00 0.00 32.15 3.77
2289 2840 5.257082 TCATCAATGCCAAATCAGACATG 57.743 39.130 0.00 0.00 0.00 3.21
2376 2927 6.906157 ATGGAGTAATGCAATCCAATAAGG 57.094 37.500 14.80 0.00 45.82 2.69
2425 2976 4.035091 TCAACAAGAACATCAGGAAACACG 59.965 41.667 0.00 0.00 0.00 4.49
2426 2977 5.499139 TCAACAAGAACATCAGGAAACAC 57.501 39.130 0.00 0.00 0.00 3.32
2429 2980 4.276678 CAGCTCAACAAGAACATCAGGAAA 59.723 41.667 0.00 0.00 0.00 3.13
2452 3003 5.634439 CACAGAGAGCATGTATCATAAGAGC 59.366 44.000 0.00 0.00 0.00 4.09
2453 3004 6.862608 GTCACAGAGAGCATGTATCATAAGAG 59.137 42.308 0.00 0.00 0.00 2.85
2690 3245 2.103263 AGACAGAACGAAGCTTGACCTT 59.897 45.455 2.10 0.00 0.00 3.50
2703 3258 6.036470 CCTTGTTTGAGGAAAAAGACAGAAC 58.964 40.000 0.00 0.00 39.25 3.01
2752 3307 1.234821 CGGTGGTGCTTCAAGCTAAA 58.765 50.000 11.57 0.00 42.97 1.85
2838 3583 8.741841 AGTAGTAAAGTGTTCTCTTGAGGTATC 58.258 37.037 0.00 0.00 0.00 2.24
3176 3969 4.612412 TTTGCCCCGTCGTCGCTT 62.612 61.111 0.00 0.00 35.54 4.68
3242 4035 1.418637 GTACCCACCAAACTGACCTGA 59.581 52.381 0.00 0.00 0.00 3.86
3466 4259 3.059166 GGCATTGTCAATTTGTCACCAC 58.941 45.455 0.00 0.00 0.00 4.16
3547 4357 7.825331 AGGATGATGTATTCTCTCGTAAAGA 57.175 36.000 0.00 0.00 0.00 2.52
3672 4482 3.716431 ACATTTAGGAACGGAGGGAGTA 58.284 45.455 0.00 0.00 0.00 2.59
3673 4483 2.547990 ACATTTAGGAACGGAGGGAGT 58.452 47.619 0.00 0.00 0.00 3.85
3674 4484 4.161754 ACTTACATTTAGGAACGGAGGGAG 59.838 45.833 0.00 0.00 0.00 4.30
3675 4485 4.098894 ACTTACATTTAGGAACGGAGGGA 58.901 43.478 0.00 0.00 0.00 4.20
3676 4486 4.161754 AGACTTACATTTAGGAACGGAGGG 59.838 45.833 0.00 0.00 0.00 4.30
3677 4487 5.340439 AGACTTACATTTAGGAACGGAGG 57.660 43.478 0.00 0.00 0.00 4.30
3678 4488 7.668525 AAAAGACTTACATTTAGGAACGGAG 57.331 36.000 0.00 0.00 0.00 4.63
3679 4489 9.211485 CTAAAAAGACTTACATTTAGGAACGGA 57.789 33.333 8.91 0.00 33.69 4.69
3680 4490 9.211485 TCTAAAAAGACTTACATTTAGGAACGG 57.789 33.333 13.94 0.00 36.48 4.44
3702 4512 9.399797 ACATGCAGTTCATATTGAAATCTCTAA 57.600 29.630 0.00 0.00 38.22 2.10
3703 4513 8.833493 CACATGCAGTTCATATTGAAATCTCTA 58.167 33.333 0.00 0.00 38.22 2.43
3704 4514 7.201794 CCACATGCAGTTCATATTGAAATCTCT 60.202 37.037 0.00 0.00 38.22 3.10
3705 4515 6.916387 CCACATGCAGTTCATATTGAAATCTC 59.084 38.462 0.00 0.00 38.22 2.75
3706 4516 6.604396 TCCACATGCAGTTCATATTGAAATCT 59.396 34.615 0.00 0.00 38.22 2.40
3707 4517 6.798482 TCCACATGCAGTTCATATTGAAATC 58.202 36.000 0.00 0.00 38.22 2.17
3708 4518 6.778834 TCCACATGCAGTTCATATTGAAAT 57.221 33.333 0.00 0.00 38.22 2.17
3709 4519 6.153170 ACATCCACATGCAGTTCATATTGAAA 59.847 34.615 0.00 0.00 34.02 2.69
3710 4520 5.653330 ACATCCACATGCAGTTCATATTGAA 59.347 36.000 0.00 0.00 31.39 2.69
3711 4521 5.195185 ACATCCACATGCAGTTCATATTGA 58.805 37.500 0.00 0.00 33.19 2.57
3712 4522 5.509716 ACATCCACATGCAGTTCATATTG 57.490 39.130 0.00 0.00 33.19 1.90
3713 4523 6.121590 TGTACATCCACATGCAGTTCATATT 58.878 36.000 0.00 0.00 33.19 1.28
3714 4524 5.683681 TGTACATCCACATGCAGTTCATAT 58.316 37.500 0.00 0.00 33.19 1.78
3715 4525 5.096443 TGTACATCCACATGCAGTTCATA 57.904 39.130 0.00 0.00 33.19 2.15
3716 4526 3.954200 TGTACATCCACATGCAGTTCAT 58.046 40.909 0.00 0.00 32.57 2.57
3717 4527 3.415457 TGTACATCCACATGCAGTTCA 57.585 42.857 0.00 0.00 32.57 3.18
3718 4528 5.235186 GTCTATGTACATCCACATGCAGTTC 59.765 44.000 12.68 0.00 39.46 3.01
3719 4529 5.118990 GTCTATGTACATCCACATGCAGTT 58.881 41.667 12.68 0.00 39.46 3.16
3720 4530 4.162131 TGTCTATGTACATCCACATGCAGT 59.838 41.667 12.68 0.00 39.46 4.40
3721 4531 4.696455 TGTCTATGTACATCCACATGCAG 58.304 43.478 12.68 1.49 39.46 4.41
3722 4532 4.751767 TGTCTATGTACATCCACATGCA 57.248 40.909 12.68 0.00 39.46 3.96
3723 4533 7.912056 AATATGTCTATGTACATCCACATGC 57.088 36.000 27.63 10.93 40.52 4.06
3746 4556 8.730680 GCAAAATGAGTGAATCTACCTCTAAAA 58.269 33.333 0.00 0.00 0.00 1.52
3747 4557 8.103305 AGCAAAATGAGTGAATCTACCTCTAAA 58.897 33.333 0.00 0.00 0.00 1.85
3748 4558 7.624549 AGCAAAATGAGTGAATCTACCTCTAA 58.375 34.615 0.00 0.00 0.00 2.10
3749 4559 7.093333 TGAGCAAAATGAGTGAATCTACCTCTA 60.093 37.037 0.00 0.00 0.00 2.43
3750 4560 6.059787 AGCAAAATGAGTGAATCTACCTCT 57.940 37.500 0.00 0.00 0.00 3.69
3751 4561 5.877012 TGAGCAAAATGAGTGAATCTACCTC 59.123 40.000 0.00 0.00 0.00 3.85
3752 4562 5.809001 TGAGCAAAATGAGTGAATCTACCT 58.191 37.500 0.00 0.00 0.00 3.08
3753 4563 6.317857 GTTGAGCAAAATGAGTGAATCTACC 58.682 40.000 0.00 0.00 0.00 3.18
3754 4564 6.150140 AGGTTGAGCAAAATGAGTGAATCTAC 59.850 38.462 0.00 0.00 0.00 2.59
3755 4565 6.240894 AGGTTGAGCAAAATGAGTGAATCTA 58.759 36.000 0.00 0.00 0.00 1.98
3756 4566 5.075493 AGGTTGAGCAAAATGAGTGAATCT 58.925 37.500 0.00 0.00 0.00 2.40
3757 4567 5.182760 AGAGGTTGAGCAAAATGAGTGAATC 59.817 40.000 0.00 0.00 0.00 2.52
3758 4568 5.075493 AGAGGTTGAGCAAAATGAGTGAAT 58.925 37.500 0.00 0.00 0.00 2.57
3759 4569 4.464008 AGAGGTTGAGCAAAATGAGTGAA 58.536 39.130 0.00 0.00 0.00 3.18
3760 4570 4.090761 AGAGGTTGAGCAAAATGAGTGA 57.909 40.909 0.00 0.00 0.00 3.41
3761 4571 5.947228 TTAGAGGTTGAGCAAAATGAGTG 57.053 39.130 0.00 0.00 0.00 3.51
3762 4572 6.959639 TTTTAGAGGTTGAGCAAAATGAGT 57.040 33.333 0.00 0.00 0.00 3.41
3783 4593 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3784 4594 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3785 4595 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3786 4596 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3787 4597 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3788 4598 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3789 4599 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3790 4600 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3791 4601 7.300658 ACTACTCCCTCCGTTCCTAAATATAA 58.699 38.462 0.00 0.00 0.00 0.98
3792 4602 6.856757 ACTACTCCCTCCGTTCCTAAATATA 58.143 40.000 0.00 0.00 0.00 0.86
3793 4603 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3794 4604 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3795 4605 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3796 4606 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3797 4607 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
3798 4608 2.042162 ACAACTACTCCCTCCGTTCCTA 59.958 50.000 0.00 0.00 0.00 2.94
3799 4609 1.203149 ACAACTACTCCCTCCGTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
3800 4610 1.204231 GACAACTACTCCCTCCGTTCC 59.796 57.143 0.00 0.00 0.00 3.62
3801 4611 1.891150 TGACAACTACTCCCTCCGTTC 59.109 52.381 0.00 0.00 0.00 3.95
3802 4612 2.005370 TGACAACTACTCCCTCCGTT 57.995 50.000 0.00 0.00 0.00 4.44
3803 4613 2.005370 TTGACAACTACTCCCTCCGT 57.995 50.000 0.00 0.00 0.00 4.69
3804 4614 3.611766 AATTGACAACTACTCCCTCCG 57.388 47.619 0.00 0.00 0.00 4.63
3805 4615 5.313712 TCAAAATTGACAACTACTCCCTCC 58.686 41.667 0.00 0.00 31.01 4.30
3806 4616 6.877611 TTCAAAATTGACAACTACTCCCTC 57.122 37.500 0.00 0.00 36.83 4.30
3807 4617 7.839680 AATTCAAAATTGACAACTACTCCCT 57.160 32.000 0.00 0.00 36.83 4.20
3808 4618 8.141268 TGAAATTCAAAATTGACAACTACTCCC 58.859 33.333 0.00 0.00 36.83 4.30
3809 4619 9.528018 TTGAAATTCAAAATTGACAACTACTCC 57.472 29.630 5.87 0.00 36.83 3.85
3840 4650 8.428186 TCTTACAACGTTTTTCTACTCATTGT 57.572 30.769 0.00 0.00 33.80 2.71
3883 4695 7.201635 GCTCCATTTTCTGTTGTTTGTTTCATT 60.202 33.333 0.00 0.00 0.00 2.57
3940 4752 5.931724 CCAAAATTTGTAAACCCAGATGGAC 59.068 40.000 4.92 0.00 37.39 4.02
4077 4889 9.556772 CCTTCCAGGTTTATTAGACCCTATATA 57.443 37.037 0.00 0.00 37.93 0.86
4079 4891 7.867160 CCTTCCAGGTTTATTAGACCCTATA 57.133 40.000 0.00 0.00 37.93 1.31
4101 4914 8.958506 CATGTAACAAGTCTACTACTTCTACCT 58.041 37.037 0.00 0.00 45.64 3.08
4129 4942 0.519961 AGGCGGCGTTGTACAAATTC 59.480 50.000 10.51 2.29 0.00 2.17
4138 4951 2.501223 TACTCCTGAAGGCGGCGTTG 62.501 60.000 13.20 0.49 34.44 4.10
4150 4963 2.648059 CTCCAAATTGCCCTACTCCTG 58.352 52.381 0.00 0.00 0.00 3.86
4242 5057 3.512724 AGAAGTAATTCCGAACGAAGGGA 59.487 43.478 0.00 0.00 32.78 4.20
4243 5058 3.858247 AGAAGTAATTCCGAACGAAGGG 58.142 45.455 0.00 0.00 32.78 3.95
4244 5059 4.689345 ACAAGAAGTAATTCCGAACGAAGG 59.311 41.667 0.00 0.00 32.78 3.46
4245 5060 5.840940 ACAAGAAGTAATTCCGAACGAAG 57.159 39.130 0.00 0.00 32.78 3.79
4247 5062 6.258230 TCTACAAGAAGTAATTCCGAACGA 57.742 37.500 0.00 0.00 30.92 3.85
4248 5063 6.939551 TTCTACAAGAAGTAATTCCGAACG 57.060 37.500 0.00 0.00 29.50 3.95
4249 5064 8.175716 CCATTTCTACAAGAAGTAATTCCGAAC 58.824 37.037 0.00 0.00 35.37 3.95
4250 5065 8.098286 TCCATTTCTACAAGAAGTAATTCCGAA 58.902 33.333 0.00 0.00 35.37 4.30
4251 5066 7.617225 TCCATTTCTACAAGAAGTAATTCCGA 58.383 34.615 0.00 0.00 35.37 4.55
4252 5067 7.843490 TCCATTTCTACAAGAAGTAATTCCG 57.157 36.000 0.00 0.00 35.37 4.30
4253 5068 9.178758 ACATCCATTTCTACAAGAAGTAATTCC 57.821 33.333 0.00 0.00 35.37 3.01
4262 5077 9.421399 TGTCTAGATACATCCATTTCTACAAGA 57.579 33.333 0.00 0.00 0.00 3.02
4263 5078 9.469807 GTGTCTAGATACATCCATTTCTACAAG 57.530 37.037 14.20 0.00 0.00 3.16
4264 5079 9.201989 AGTGTCTAGATACATCCATTTCTACAA 57.798 33.333 20.24 0.00 0.00 2.41
4265 5080 8.768501 AGTGTCTAGATACATCCATTTCTACA 57.231 34.615 20.24 0.00 0.00 2.74
4273 5088 8.961634 GCTTGATATAGTGTCTAGATACATCCA 58.038 37.037 20.24 8.65 0.00 3.41
4274 5089 9.184523 AGCTTGATATAGTGTCTAGATACATCC 57.815 37.037 20.24 6.51 0.00 3.51
4298 5113 9.958234 ACAGAGAAAAAGAAAGAGAAAAATAGC 57.042 29.630 0.00 0.00 0.00 2.97
4355 5171 4.901868 TGAAGTGCCGTAACCTTAAAGAT 58.098 39.130 0.00 0.00 0.00 2.40
4358 5174 4.320641 GCATTGAAGTGCCGTAACCTTAAA 60.321 41.667 0.00 0.00 39.18 1.52
4407 5229 4.529377 ACGGAGGGAGTAGTAACAATTTGA 59.471 41.667 2.79 0.00 0.00 2.69
4420 5242 9.338622 CTTATATTAAAAATGAACGGAGGGAGT 57.661 33.333 0.00 0.00 0.00 3.85
4421 5243 9.555727 TCTTATATTAAAAATGAACGGAGGGAG 57.444 33.333 0.00 0.00 0.00 4.30
4422 5244 9.333724 GTCTTATATTAAAAATGAACGGAGGGA 57.666 33.333 0.00 0.00 0.00 4.20
4423 5245 8.280497 CGTCTTATATTAAAAATGAACGGAGGG 58.720 37.037 0.00 0.00 0.00 4.30
4424 5246 8.823818 ACGTCTTATATTAAAAATGAACGGAGG 58.176 33.333 0.00 0.00 0.00 4.30
4441 5263 9.656040 TGTCTTAAATGCCTAAAACGTCTTATA 57.344 29.630 0.00 0.00 0.00 0.98
4442 5264 8.556213 TGTCTTAAATGCCTAAAACGTCTTAT 57.444 30.769 0.00 0.00 0.00 1.73
4443 5265 7.966246 TGTCTTAAATGCCTAAAACGTCTTA 57.034 32.000 0.00 0.00 0.00 2.10
4444 5266 6.870971 TGTCTTAAATGCCTAAAACGTCTT 57.129 33.333 0.00 0.00 0.00 3.01
4445 5267 6.261381 TGTTGTCTTAAATGCCTAAAACGTCT 59.739 34.615 0.00 0.00 0.00 4.18
4446 5268 6.358822 GTGTTGTCTTAAATGCCTAAAACGTC 59.641 38.462 0.00 0.00 0.00 4.34
4447 5269 6.038936 AGTGTTGTCTTAAATGCCTAAAACGT 59.961 34.615 0.00 0.00 0.00 3.99
4448 5270 6.435428 AGTGTTGTCTTAAATGCCTAAAACG 58.565 36.000 0.00 0.00 0.00 3.60
4449 5271 9.738832 TTAAGTGTTGTCTTAAATGCCTAAAAC 57.261 29.630 0.00 0.00 37.09 2.43
4452 5274 9.738832 GTTTTAAGTGTTGTCTTAAATGCCTAA 57.261 29.630 10.86 0.00 44.15 2.69
4453 5275 8.904834 TGTTTTAAGTGTTGTCTTAAATGCCTA 58.095 29.630 10.86 0.00 44.15 3.93
4454 5276 7.777095 TGTTTTAAGTGTTGTCTTAAATGCCT 58.223 30.769 10.86 0.00 44.15 4.75
4455 5277 7.704899 ACTGTTTTAAGTGTTGTCTTAAATGCC 59.295 33.333 10.86 5.35 44.15 4.40
4456 5278 8.628882 ACTGTTTTAAGTGTTGTCTTAAATGC 57.371 30.769 10.86 8.60 44.15 3.56
4459 5281 9.834628 CTGAACTGTTTTAAGTGTTGTCTTAAA 57.165 29.630 7.31 7.31 43.54 1.52
4460 5282 9.005777 ACTGAACTGTTTTAAGTGTTGTCTTAA 57.994 29.630 0.00 0.00 37.88 1.85
4461 5283 8.556213 ACTGAACTGTTTTAAGTGTTGTCTTA 57.444 30.769 0.00 0.00 0.00 2.10
4462 5284 7.448748 ACTGAACTGTTTTAAGTGTTGTCTT 57.551 32.000 0.00 0.00 0.00 3.01
4463 5285 7.448748 AACTGAACTGTTTTAAGTGTTGTCT 57.551 32.000 0.00 0.00 0.00 3.41
4464 5286 7.806014 TGAAACTGAACTGTTTTAAGTGTTGTC 59.194 33.333 10.19 0.00 39.86 3.18
4465 5287 7.653647 TGAAACTGAACTGTTTTAAGTGTTGT 58.346 30.769 10.19 0.00 39.86 3.32
4466 5288 7.201350 GCTGAAACTGAACTGTTTTAAGTGTTG 60.201 37.037 10.19 0.00 39.86 3.33
4467 5289 6.806739 GCTGAAACTGAACTGTTTTAAGTGTT 59.193 34.615 10.19 0.00 39.86 3.32
4468 5290 6.151144 AGCTGAAACTGAACTGTTTTAAGTGT 59.849 34.615 10.19 0.00 39.86 3.55
4469 5291 6.470235 CAGCTGAAACTGAACTGTTTTAAGTG 59.530 38.462 8.42 4.60 39.86 3.16
4470 5292 6.151144 ACAGCTGAAACTGAACTGTTTTAAGT 59.849 34.615 23.35 0.00 38.38 2.24
4471 5293 6.555315 ACAGCTGAAACTGAACTGTTTTAAG 58.445 36.000 23.35 11.31 38.38 1.85
4472 5294 6.374333 AGACAGCTGAAACTGAACTGTTTTAA 59.626 34.615 23.35 3.64 41.45 1.52
4473 5295 5.880332 AGACAGCTGAAACTGAACTGTTTTA 59.120 36.000 23.35 6.48 41.45 1.52
4474 5296 4.702131 AGACAGCTGAAACTGAACTGTTTT 59.298 37.500 23.35 0.00 41.45 2.43
4475 5297 4.265073 AGACAGCTGAAACTGAACTGTTT 58.735 39.130 23.35 8.97 41.45 2.83
4476 5298 3.878778 AGACAGCTGAAACTGAACTGTT 58.121 40.909 23.35 0.00 41.45 3.16
4477 5299 3.550437 AGACAGCTGAAACTGAACTGT 57.450 42.857 23.35 0.00 43.93 3.55
4478 5300 5.991328 TTTAGACAGCTGAAACTGAACTG 57.009 39.130 23.35 0.00 40.25 3.16
4479 5301 5.006746 CGTTTTAGACAGCTGAAACTGAACT 59.993 40.000 23.35 8.36 44.14 3.01
4480 5302 5.198274 CGTTTTAGACAGCTGAAACTGAAC 58.802 41.667 23.35 19.74 44.14 3.18
4481 5303 4.873827 ACGTTTTAGACAGCTGAAACTGAA 59.126 37.500 23.35 15.36 44.14 3.02
4482 5304 4.439057 ACGTTTTAGACAGCTGAAACTGA 58.561 39.130 23.35 10.34 44.14 3.41
4483 5305 4.795970 ACGTTTTAGACAGCTGAAACTG 57.204 40.909 23.35 16.76 44.14 3.16
4484 5306 5.813080 AAACGTTTTAGACAGCTGAAACT 57.187 34.783 23.35 17.71 44.14 2.66
4485 5307 6.962678 TGTAAAACGTTTTAGACAGCTGAAAC 59.037 34.615 28.88 18.37 43.38 2.78
4486 5308 7.074507 TGTAAAACGTTTTAGACAGCTGAAA 57.925 32.000 28.88 7.93 33.66 2.69
4487 5309 6.665474 TGTAAAACGTTTTAGACAGCTGAA 57.335 33.333 28.88 7.48 33.66 3.02
4488 5310 6.665474 TTGTAAAACGTTTTAGACAGCTGA 57.335 33.333 28.88 12.37 33.66 4.26
4489 5311 7.728580 TTTTGTAAAACGTTTTAGACAGCTG 57.271 32.000 28.88 13.48 33.66 4.24
4490 5312 8.803799 CATTTTTGTAAAACGTTTTAGACAGCT 58.196 29.630 28.88 13.24 33.66 4.24
4491 5313 8.800031 TCATTTTTGTAAAACGTTTTAGACAGC 58.200 29.630 28.88 18.74 33.66 4.40
4498 5320 8.166066 GCTCTGTTCATTTTTGTAAAACGTTTT 58.834 29.630 27.65 27.65 0.00 2.43
4499 5321 7.462200 CGCTCTGTTCATTTTTGTAAAACGTTT 60.462 33.333 7.96 7.96 0.00 3.60
4500 5322 6.020995 CGCTCTGTTCATTTTTGTAAAACGTT 60.021 34.615 0.00 0.00 0.00 3.99
4501 5323 5.454232 CGCTCTGTTCATTTTTGTAAAACGT 59.546 36.000 0.00 0.00 0.00 3.99
4502 5324 5.679355 TCGCTCTGTTCATTTTTGTAAAACG 59.321 36.000 0.00 0.00 0.00 3.60
4503 5325 6.691388 ACTCGCTCTGTTCATTTTTGTAAAAC 59.309 34.615 0.00 0.00 0.00 2.43
4504 5326 6.791303 ACTCGCTCTGTTCATTTTTGTAAAA 58.209 32.000 0.00 0.00 0.00 1.52
4505 5327 6.371809 ACTCGCTCTGTTCATTTTTGTAAA 57.628 33.333 0.00 0.00 0.00 2.01
4506 5328 7.485418 TTACTCGCTCTGTTCATTTTTGTAA 57.515 32.000 0.00 0.00 0.00 2.41
4507 5329 7.667043 ATTACTCGCTCTGTTCATTTTTGTA 57.333 32.000 0.00 0.00 0.00 2.41
4508 5330 6.560253 ATTACTCGCTCTGTTCATTTTTGT 57.440 33.333 0.00 0.00 0.00 2.83
4509 5331 7.518161 TGTATTACTCGCTCTGTTCATTTTTG 58.482 34.615 0.00 0.00 0.00 2.44
4510 5332 7.667043 TGTATTACTCGCTCTGTTCATTTTT 57.333 32.000 0.00 0.00 0.00 1.94
4511 5333 7.849804 ATGTATTACTCGCTCTGTTCATTTT 57.150 32.000 0.00 0.00 0.00 1.82
4512 5334 7.766278 AGAATGTATTACTCGCTCTGTTCATTT 59.234 33.333 0.00 0.00 0.00 2.32
4513 5335 7.268586 AGAATGTATTACTCGCTCTGTTCATT 58.731 34.615 0.00 0.00 0.00 2.57
4514 5336 6.810911 AGAATGTATTACTCGCTCTGTTCAT 58.189 36.000 0.00 0.00 0.00 2.57
4515 5337 6.208988 AGAATGTATTACTCGCTCTGTTCA 57.791 37.500 0.00 0.00 0.00 3.18
4516 5338 7.640852 TCTAGAATGTATTACTCGCTCTGTTC 58.359 38.462 0.00 0.00 0.00 3.18
4517 5339 7.569639 TCTAGAATGTATTACTCGCTCTGTT 57.430 36.000 0.00 0.00 0.00 3.16
4518 5340 7.283580 ACTTCTAGAATGTATTACTCGCTCTGT 59.716 37.037 5.44 0.00 0.00 3.41
4519 5341 7.589587 CACTTCTAGAATGTATTACTCGCTCTG 59.410 40.741 5.44 0.00 0.00 3.35
4520 5342 7.255312 CCACTTCTAGAATGTATTACTCGCTCT 60.255 40.741 5.44 0.00 0.00 4.09
4521 5343 6.858993 CCACTTCTAGAATGTATTACTCGCTC 59.141 42.308 5.44 0.00 0.00 5.03
4522 5344 6.546403 TCCACTTCTAGAATGTATTACTCGCT 59.454 38.462 5.44 0.00 0.00 4.93
4523 5345 6.736123 TCCACTTCTAGAATGTATTACTCGC 58.264 40.000 5.44 0.00 0.00 5.03
4524 5346 9.582431 TTTTCCACTTCTAGAATGTATTACTCG 57.418 33.333 5.44 0.00 0.00 4.18
4529 5351 9.739276 TCATGTTTTCCACTTCTAGAATGTATT 57.261 29.630 5.44 0.00 0.00 1.89
4530 5352 9.167311 GTCATGTTTTCCACTTCTAGAATGTAT 57.833 33.333 5.44 0.00 0.00 2.29
4531 5353 8.154203 TGTCATGTTTTCCACTTCTAGAATGTA 58.846 33.333 5.44 0.00 0.00 2.29
4532 5354 6.998074 TGTCATGTTTTCCACTTCTAGAATGT 59.002 34.615 5.44 3.84 0.00 2.71
4533 5355 7.173907 AGTGTCATGTTTTCCACTTCTAGAATG 59.826 37.037 5.44 6.76 34.64 2.67
4534 5356 7.173907 CAGTGTCATGTTTTCCACTTCTAGAAT 59.826 37.037 5.44 0.00 36.06 2.40
4535 5357 6.483307 CAGTGTCATGTTTTCCACTTCTAGAA 59.517 38.462 4.81 4.81 36.06 2.10
4536 5358 5.991606 CAGTGTCATGTTTTCCACTTCTAGA 59.008 40.000 0.00 0.00 36.06 2.43
4537 5359 5.334414 GCAGTGTCATGTTTTCCACTTCTAG 60.334 44.000 0.00 0.00 36.06 2.43
4538 5360 4.515191 GCAGTGTCATGTTTTCCACTTCTA 59.485 41.667 0.00 0.00 36.06 2.10
4539 5361 3.316308 GCAGTGTCATGTTTTCCACTTCT 59.684 43.478 0.00 0.00 36.06 2.85
4540 5362 3.066621 TGCAGTGTCATGTTTTCCACTTC 59.933 43.478 0.00 0.00 36.06 3.01
4541 5363 3.023119 TGCAGTGTCATGTTTTCCACTT 58.977 40.909 0.00 0.00 36.06 3.16
4542 5364 2.620115 CTGCAGTGTCATGTTTTCCACT 59.380 45.455 5.25 0.00 38.64 4.00
4543 5365 2.618241 TCTGCAGTGTCATGTTTTCCAC 59.382 45.455 14.67 0.00 0.00 4.02
4544 5366 2.929641 TCTGCAGTGTCATGTTTTCCA 58.070 42.857 14.67 0.00 0.00 3.53
4545 5367 3.988379 TTCTGCAGTGTCATGTTTTCC 57.012 42.857 14.67 0.00 0.00 3.13
4546 5368 5.343249 AGTTTTCTGCAGTGTCATGTTTTC 58.657 37.500 14.67 0.00 0.00 2.29
4547 5369 5.329035 AGTTTTCTGCAGTGTCATGTTTT 57.671 34.783 14.67 0.00 0.00 2.43
4548 5370 4.989279 AGTTTTCTGCAGTGTCATGTTT 57.011 36.364 14.67 0.00 0.00 2.83
4549 5371 6.710295 TGTATAGTTTTCTGCAGTGTCATGTT 59.290 34.615 14.67 0.00 0.00 2.71
4550 5372 6.230472 TGTATAGTTTTCTGCAGTGTCATGT 58.770 36.000 14.67 0.00 0.00 3.21
4551 5373 6.726258 TGTATAGTTTTCTGCAGTGTCATG 57.274 37.500 14.67 0.00 0.00 3.07
4552 5374 7.744087 TTTGTATAGTTTTCTGCAGTGTCAT 57.256 32.000 14.67 3.85 0.00 3.06
4553 5375 7.561021 TTTTGTATAGTTTTCTGCAGTGTCA 57.439 32.000 14.67 0.00 0.00 3.58
4576 5398 9.817809 GAGTAGTTTCAAAATTTCCTTCCTTTT 57.182 29.630 0.00 0.00 0.00 2.27
4577 5399 8.421784 GGAGTAGTTTCAAAATTTCCTTCCTTT 58.578 33.333 0.00 0.00 0.00 3.11
4578 5400 7.015292 GGGAGTAGTTTCAAAATTTCCTTCCTT 59.985 37.037 0.00 0.00 0.00 3.36
4579 5401 6.493802 GGGAGTAGTTTCAAAATTTCCTTCCT 59.506 38.462 0.00 0.00 0.00 3.36
4580 5402 6.493802 AGGGAGTAGTTTCAAAATTTCCTTCC 59.506 38.462 0.00 0.00 0.00 3.46
4581 5403 7.309255 GGAGGGAGTAGTTTCAAAATTTCCTTC 60.309 40.741 0.00 5.07 0.00 3.46
4582 5404 6.493802 GGAGGGAGTAGTTTCAAAATTTCCTT 59.506 38.462 0.00 0.00 0.00 3.36
4583 5405 6.010850 GGAGGGAGTAGTTTCAAAATTTCCT 58.989 40.000 0.00 0.00 0.00 3.36
4584 5406 5.106277 CGGAGGGAGTAGTTTCAAAATTTCC 60.106 44.000 0.00 0.00 0.00 3.13
4585 5407 5.472478 ACGGAGGGAGTAGTTTCAAAATTTC 59.528 40.000 0.00 0.00 0.00 2.17
4586 5408 5.382616 ACGGAGGGAGTAGTTTCAAAATTT 58.617 37.500 0.00 0.00 0.00 1.82
4587 5409 4.981812 ACGGAGGGAGTAGTTTCAAAATT 58.018 39.130 0.00 0.00 0.00 1.82
4588 5410 4.635699 ACGGAGGGAGTAGTTTCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
4589 5411 4.383173 GAACGGAGGGAGTAGTTTCAAAA 58.617 43.478 0.00 0.00 0.00 2.44
4590 5412 3.244318 GGAACGGAGGGAGTAGTTTCAAA 60.244 47.826 0.00 0.00 0.00 2.69
4591 5413 2.301009 GGAACGGAGGGAGTAGTTTCAA 59.699 50.000 0.00 0.00 0.00 2.69
4592 5414 1.897802 GGAACGGAGGGAGTAGTTTCA 59.102 52.381 0.00 0.00 0.00 2.69
4593 5415 2.177734 AGGAACGGAGGGAGTAGTTTC 58.822 52.381 0.00 0.00 0.00 2.78
4594 5416 2.322339 AGGAACGGAGGGAGTAGTTT 57.678 50.000 0.00 0.00 0.00 2.66
4595 5417 3.463048 TTAGGAACGGAGGGAGTAGTT 57.537 47.619 0.00 0.00 0.00 2.24
4596 5418 3.463048 TTTAGGAACGGAGGGAGTAGT 57.537 47.619 0.00 0.00 0.00 2.73
4597 5419 6.667558 AATATTTAGGAACGGAGGGAGTAG 57.332 41.667 0.00 0.00 0.00 2.57
4598 5420 7.441903 AAAATATTTAGGAACGGAGGGAGTA 57.558 36.000 0.01 0.00 0.00 2.59
4599 5421 5.970501 AAATATTTAGGAACGGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.