AutoCloner

Multiple sequence alignment - TraesCS1D01G235900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G235900	chr1D	100.000	4758	0	0	1	4758	325591522	325586765	0.000000e+00	8787.0
1	TraesCS1D01G235900	chr1A	95.296	3529	116	22	1274	4758	418937177	418940699	0.000000e+00	5552.0
2	TraesCS1D01G235900	chr1A	92.883	1110	47	10	1	1096	418935862	418936953	0.000000e+00	1583.0
3	TraesCS1D01G235900	chr1A	91.009	1090	60	9	3399	4451	406599643	406600731	0.000000e+00	1435.0
4	TraesCS1D01G235900	chr1A	90.503	1053	62	7	3399	4413	425253087	425252035	0.000000e+00	1356.0
5	TraesCS1D01G235900	chr1A	90.560	1017	58	16	3399	4377	407513152	407512136	0.000000e+00	1312.0
6	TraesCS1D01G235900	chr1A	88.698	1106	72	8	3399	4451	421642808	421643913	0.000000e+00	1301.0
7	TraesCS1D01G235900	chr1A	96.565	757	24	2	2262	3017	425253841	425253086	0.000000e+00	1253.0
8	TraesCS1D01G235900	chr1A	96.433	757	25	2	2262	3017	421642054	421642809	0.000000e+00	1247.0
9	TraesCS1D01G235900	chr1A	96.301	757	25	3	2262	3017	406598890	406599644	0.000000e+00	1240.0
10	TraesCS1D01G235900	chr1A	93.871	310	17	2	2709	3017	407513459	407513151	2.590000e-127	466.0
11	TraesCS1D01G235900	chr1A	89.809	157	15	1	4602	4758	419008284	419008439	2.900000e-47	200.0
12	TraesCS1D01G235900	chr1A	90.769	130	12	0	1124	1253	418936951	418937080	1.760000e-39	174.0
13	TraesCS1D01G235900	chr1A	97.436	78	1	1	4374	4451	407511816	407511740	1.070000e-26	132.0
14	TraesCS1D01G235900	chr1B	96.877	1665	44	6	1274	2932	438032798	438031136	0.000000e+00	2780.0
15	TraesCS1D01G235900	chr1B	97.619	1596	24	5	2925	4511	438030928	438029338	0.000000e+00	2724.0
16	TraesCS1D01G235900	chr1B	91.087	819	39	9	1	816	438034452	438033665	0.000000e+00	1077.0
17	TraesCS1D01G235900	chr1B	92.442	344	24	2	934	1276	438033302	438032960	1.540000e-134	490.0
18	TraesCS1D01G235900	chr1B	98.077	104	2	0	4655	4758	438028858	438028755	1.050000e-41	182.0
19	TraesCS1D01G235900	chrUn	90.260	154	14	1	4605	4758	388760223	388760071	2.900000e-47	200.0
20	TraesCS1D01G235900	chrUn	89.809	157	15	1	4602	4758	390043387	390043542	2.900000e-47	200.0
21	TraesCS1D01G235900	chr2D	95.789	95	4	0	1	95	506282921	506282827	2.290000e-33	154.0
22	TraesCS1D01G235900	chr2D	89.552	67	6	1	4454	4519	634331489	634331423	3.050000e-12	84.2
23	TraesCS1D01G235900	chr3D	94.737	95	5	0	1	95	488892593	488892499	1.070000e-31	148.0
24	TraesCS1D01G235900	chr5A	88.235	68	7	1	4453	4519	338221466	338221533	3.950000e-11	80.5
25	TraesCS1D01G235900	chr5A	94.231	52	3	0	4450	4501	586663221	586663170	3.950000e-11	80.5
26	TraesCS1D01G235900	chr7A	87.143	70	8	1	4451	4519	459622742	459622811	1.420000e-10	78.7
27	TraesCS1D01G235900	chr2A	89.062	64	6	1	4453	4515	760323921	760323858	1.420000e-10	78.7
28	TraesCS1D01G235900	chr4D	86.957	69	8	1	4452	4519	73219398	73219330	5.110000e-10	76.8
29	TraesCS1D01G235900	chr4D	87.273	55	2	5	4590	4641	324467076	324467128	1.850000e-04	58.4
30	TraesCS1D01G235900	chr7B	86.567	67	7	1	4453	4519	150186866	150186930	6.600000e-09	73.1
31	TraesCS1D01G235900	chr6D	97.368	38	1	0	4611	4648	262748164	262748127	1.110000e-06	65.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G235900	chr1D	325586765	325591522	4757	True	8787.000000	8787	100.000000	1	4758	1	chr1D.!!$R1	4757
1	TraesCS1D01G235900	chr1A	418935862	418940699	4837	False	2436.333333	5552	92.982667	1	4758	3	chr1A.!!$F3	4757
2	TraesCS1D01G235900	chr1A	406598890	406600731	1841	False	1337.500000	1435	93.655000	2262	4451	2	chr1A.!!$F2	2189
3	TraesCS1D01G235900	chr1A	425252035	425253841	1806	True	1304.500000	1356	93.534000	2262	4413	2	chr1A.!!$R2	2151
4	TraesCS1D01G235900	chr1A	421642054	421643913	1859	False	1274.000000	1301	92.565500	2262	4451	2	chr1A.!!$F4	2189
5	TraesCS1D01G235900	chr1A	407511740	407513459	1719	True	636.666667	1312	93.955667	2709	4451	3	chr1A.!!$R1	1742
6	TraesCS1D01G235900	chr1B	438028755	438034452	5697	True	1450.600000	2780	95.220400	1	4758	5	chr1B.!!$R1	4757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
217	218	0.245266	TCAACGAGCGAGCCACATAA	59.755	50.000	0.00	0.00	0.00	1.90	F
249	250	0.249489	GCTACGCATGTACAGAGGGG	60.249	60.000	16.15	11.85	0.00	4.79	F
250	251	0.389391	CTACGCATGTACAGAGGGGG	59.611	60.000	16.15	9.87	0.00	5.40	F
787	801	0.959372	CTTGCCCTGCACTTCTCCTG	60.959	60.000	0.00	0.00	38.71	3.86	F
942	1201	1.306141	AATCTGGTCTGGAGGGCGA	60.306	57.895	0.00	0.00	0.00	5.54	F
2797	3227	0.871722	TTTTGTCGGGAATCACAGCG	59.128	50.000	0.00	0.00	0.00	5.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1318	1741	1.457303	GCGTTGAGTATCGATCATGCC	59.543	52.381	0.00	0.00	38.61	4.40	R
1922	2350	1.699083	TGAGTCCCTCTGAATGCAACA	59.301	47.619	0.00	0.00	0.00	3.33	R
2546	2976	4.726035	AGCAGGAGGATGAATTCATGAT	57.274	40.909	25.37	13.10	36.57	2.45	R
2797	3227	1.996191	GTTCTTGATCGGCTGACACTC	59.004	52.381	0.00	0.00	0.00	3.51	R
3060	3706	2.262915	CAGCAGGGTCACGTCCTC	59.737	66.667	0.00	0.00	31.06	3.71	R
4596	6039	1.269778	TGAAGCACTTCAGACCTGACG	60.270	52.381	8.99	0.59	43.90	4.35	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
217	218	0.245266	TCAACGAGCGAGCCACATAA	59.755	50.000	0.00	0.00	0.00	1.90
248	249	0.747255	AGCTACGCATGTACAGAGGG	59.253	55.000	0.33	7.61	0.00	4.30
249	250	0.249489	GCTACGCATGTACAGAGGGG	60.249	60.000	16.15	11.85	0.00	4.79
250	251	0.389391	CTACGCATGTACAGAGGGGG	59.611	60.000	16.15	9.87	0.00	5.40
251	252	1.682451	TACGCATGTACAGAGGGGGC	61.682	60.000	16.15	6.32	0.00	5.80
253	254	2.731571	GCATGTACAGAGGGGGCGA	61.732	63.158	0.33	0.00	0.00	5.54
254	255	2.044806	GCATGTACAGAGGGGGCGAT	62.045	60.000	0.33	0.00	0.00	4.58
378	380	1.383248	CGATTCCCCTCCCCTCTGT	60.383	63.158	0.00	0.00	0.00	3.41
493	495	4.760047	CACGTGGAGGAAGGGCCG	62.760	72.222	7.95	0.00	43.43	6.13
537	539	1.142748	CTCTGTGGCGGATCTGTCC	59.857	63.158	3.10	5.90	41.40	4.02
545	547	1.753078	CGGATCTGTCCTCGGGTCA	60.753	63.158	0.00	0.00	42.73	4.02
562	564	1.229658	CACACCTCTCCCCCTCCTT	60.230	63.158	0.00	0.00	0.00	3.36
565	568	1.369983	ACACCTCTCCCCCTCCTTATT	59.630	52.381	0.00	0.00	0.00	1.40
572	575	5.166407	CTCTCCCCCTCCTTATTAATTCCT	58.834	45.833	0.00	0.00	0.00	3.36
708	722	9.968743	CCGCGGATTATTTTACTCTATTTTATC	57.031	33.333	24.07	0.00	0.00	1.75
787	801	0.959372	CTTGCCCTGCACTTCTCCTG	60.959	60.000	0.00	0.00	38.71	3.86
870	884	1.971505	TTGATTGCCCCTCGCTCGAT	61.972	55.000	0.00	0.00	38.78	3.59
928	942	2.185350	CGCCCGCAGACAGAATCT	59.815	61.111	0.00	0.00	38.66	2.40
942	1201	1.306141	AATCTGGTCTGGAGGGCGA	60.306	57.895	0.00	0.00	0.00	5.54
1118	1377	4.322198	GGGAAAATACCGTCATCCGCTATA	60.322	45.833	0.00	0.00	34.38	1.31
1119	1378	4.863131	GGAAAATACCGTCATCCGCTATAG	59.137	45.833	0.00	0.00	34.38	1.31
1120	1379	5.464030	AAAATACCGTCATCCGCTATAGT	57.536	39.130	0.84	0.00	34.38	2.12
1121	1380	5.464030	AAATACCGTCATCCGCTATAGTT	57.536	39.130	0.84	0.00	34.38	2.24
1122	1381	6.579666	AAATACCGTCATCCGCTATAGTTA	57.420	37.500	0.84	0.00	34.38	2.24
1123	1382	3.911661	ACCGTCATCCGCTATAGTTAC	57.088	47.619	0.84	0.00	34.38	2.50
1124	1383	3.484407	ACCGTCATCCGCTATAGTTACT	58.516	45.455	0.84	0.00	34.38	2.24
1167	1426	1.531602	GAACCTGCCCTGTTTGCCT	60.532	57.895	0.00	0.00	0.00	4.75
1227	1486	4.766375	TGTTCAGGAATCGATTAGGAACC	58.234	43.478	28.01	19.19	33.95	3.62
1240	1499	2.109425	AGGAACCAGAACGCCATTAC	57.891	50.000	0.00	0.00	0.00	1.89
1253	1512	1.951424	GCCATTACCAACCAGCCGTTA	60.951	52.381	0.00	0.00	31.77	3.18
1257	1516	4.641094	CCATTACCAACCAGCCGTTATTTA	59.359	41.667	0.00	0.00	31.77	1.40
1260	1519	6.837471	TTACCAACCAGCCGTTATTTAATT	57.163	33.333	0.00	0.00	31.77	1.40
1270	1529	8.024285	CCAGCCGTTATTTAATTACAAGTTCAA	58.976	33.333	0.00	0.00	0.00	2.69
1271	1530	9.061610	CAGCCGTTATTTAATTACAAGTTCAAG	57.938	33.333	0.00	0.00	0.00	3.02
1284	1707	4.993584	ACAAGTTCAAGACATACTCTGCAG	59.006	41.667	7.63	7.63	0.00	4.41
1292	1715	6.378280	TCAAGACATACTCTGCAGTGATTCTA	59.622	38.462	21.96	4.69	33.62	2.10
1310	1733	3.629087	TCTAAGCCTAGCTACTCGGTTT	58.371	45.455	5.21	5.21	38.25	3.27
1360	1785	5.039333	GCATTCTTGTATTCTCATGTTGGC	58.961	41.667	0.00	0.00	0.00	4.52
1619	2046	6.405286	CCTGTGAAAAATGTGGTGACTTAACA	60.405	38.462	0.00	0.00	0.00	2.41
1754	2181	2.324860	GTTTGTTTTATGACGCAGGGC	58.675	47.619	0.00	0.00	0.00	5.19
1805	2233	6.825610	TGTGAAAAATTGCTTGGAGGTTATT	58.174	32.000	0.00	0.00	0.00	1.40
1819	2247	5.428184	GAGGTTATTCCCTCTATCCATGG	57.572	47.826	4.97	4.97	46.34	3.66
1912	2340	2.290367	TCGGTTTTGCAAGTGACATGAG	59.710	45.455	0.00	0.00	0.00	2.90
1922	2350	2.923121	AGTGACATGAGTGCTGTTGTT	58.077	42.857	0.00	0.00	0.00	2.83
2573	3003	7.562454	TCATGAATTCATCCTCCTGCTAAATTT	59.438	33.333	18.16	0.00	33.61	1.82
2797	3227	0.871722	TTTTGTCGGGAATCACAGCG	59.128	50.000	0.00	0.00	0.00	5.18
3060	3706	6.540438	TCTTGTAGGTCAACTATGGGTTAG	57.460	41.667	0.00	0.00	36.23	2.34
3249	3895	0.752658	CCCACGAGAGGTATGCATCA	59.247	55.000	0.19	0.00	0.00	3.07
3426	4081	4.324099	GGACTCGATAGCCTAGTATACCCA	60.324	50.000	0.00	0.00	0.00	4.51
3490	4145	3.069318	GGTCCTTCCCGCTCTCGT	61.069	66.667	0.00	0.00	0.00	4.18
4065	4752	7.181569	TGTTGAGGATGTCTATACACAATGA	57.818	36.000	0.00	0.00	38.78	2.57
4328	5026	5.885230	ACAGATGTGTTTATGTGTGATGG	57.115	39.130	0.00	0.00	33.80	3.51
4456	5492	4.202673	TGGAAGCCAAAAATAGAAGGACCT	60.203	41.667	0.00	0.00	0.00	3.85
4518	5577	4.095185	TCCGAACGTTTTGATGACAACTTT	59.905	37.500	0.46	0.00	35.63	2.66
4524	5583	7.506296	ACGTTTTGATGACAACTTTCTTTTC	57.494	32.000	0.00	0.00	35.63	2.29
4527	5586	6.443934	TTTGATGACAACTTTCTTTTCGGA	57.556	33.333	0.00	0.00	35.63	4.55
4616	6059	1.269778	CGTCAGGTCTGAAGTGCTTCA	60.270	52.381	13.22	13.22	46.27	3.02
4624	6067	0.953727	TGAAGTGCTTCATGCCACAC	59.046	50.000	10.26	8.21	43.90	3.82
4629	6072	1.081906	GCTTCATGCCACACGTGTG	60.082	57.895	36.13	36.13	45.23	3.82
4705	6148	4.508551	TCACTGGATGTTGGAGCATATT	57.491	40.909	0.00	0.00	0.00	1.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
239	240	0.755698	TCTCATCGCCCCCTCTGTAC	60.756	60.000	0.00	0.00	0.00	2.90
248	249	4.959596	GCGCCTCTCTCATCGCCC	62.960	72.222	0.00	0.00	41.53	6.13
249	250	4.212913	TGCGCCTCTCTCATCGCC	62.213	66.667	4.18	0.00	46.14	5.54
250	251	2.959071	GTGCGCCTCTCTCATCGC	60.959	66.667	4.18	0.00	46.78	4.58
251	252	2.279120	GGTGCGCCTCTCTCATCG	60.279	66.667	9.68	0.00	0.00	3.84
253	254	2.729479	CCAGGTGCGCCTCTCTCAT	61.729	63.158	18.11	0.00	44.97	2.90
254	255	3.385384	CCAGGTGCGCCTCTCTCA	61.385	66.667	18.11	0.00	44.97	3.27
291	293	3.195591	CTCCCCGACGACATAGCCG	62.196	68.421	0.00	0.00	0.00	5.52
378	380	2.416747	CTTGACACTGCAGAATCGGAA	58.583	47.619	23.35	7.51	0.00	4.30
537	539	2.352032	GGGAGAGGTGTGACCCGAG	61.352	68.421	0.00	0.00	39.75	4.63
545	547	1.027815	ATAAGGAGGGGGAGAGGTGT	58.972	55.000	0.00	0.00	0.00	4.16
562	564	2.544277	CGGTCGCCGTCAGGAATTAATA	60.544	50.000	9.69	0.00	42.73	0.98
565	568	1.140161	CGGTCGCCGTCAGGAATTA	59.860	57.895	9.69	0.00	42.73	1.40
612	615	6.404954	GGGCGTTTTAATTTGATTAGGTGCTA	60.405	38.462	0.00	0.00	0.00	3.49
708	722	7.692460	AAAGTTTAAGGGGACGGTAAATAAG	57.308	36.000	0.00	0.00	30.73	1.73
719	733	9.969001	GTATATATGGCATAAAGTTTAAGGGGA	57.031	33.333	11.86	0.00	0.00	4.81
787	801	2.983803	GCGAGAGAGAAATATTCGGAGC	59.016	50.000	0.00	0.00	34.02	4.70
833	847	5.937492	ATCAATCAATGATTAGGGAGGGT	57.063	39.130	8.29	0.00	46.85	4.34
870	884	2.754375	GGAGAAACCTTGGGCCGA	59.246	61.111	0.00	0.00	35.41	5.54
874	888	2.361230	GGCGGGAGAAACCTTGGG	60.361	66.667	0.00	0.00	38.98	4.12
877	891	4.717313	GCCGGCGGGAGAAACCTT	62.717	66.667	29.48	0.00	38.98	3.50
928	942	0.322456	CAAAATCGCCCTCCAGACCA	60.322	55.000	0.00	0.00	0.00	4.02
965	1224	0.871722	CGCGAGAATCCACCAAACAA	59.128	50.000	0.00	0.00	0.00	2.83
1118	1377	9.909644	CACATGTAGAAACTACAGTAAGTAACT	57.090	33.333	15.12	0.00	39.81	2.24
1119	1378	8.645487	GCACATGTAGAAACTACAGTAAGTAAC	58.355	37.037	15.12	5.85	30.92	2.50
1120	1379	8.582437	AGCACATGTAGAAACTACAGTAAGTAA	58.418	33.333	15.12	0.00	30.92	2.24
1121	1380	8.027189	CAGCACATGTAGAAACTACAGTAAGTA	58.973	37.037	15.12	0.00	0.00	2.24
1122	1381	6.868864	CAGCACATGTAGAAACTACAGTAAGT	59.131	38.462	15.12	9.29	0.00	2.24
1123	1382	6.183360	GCAGCACATGTAGAAACTACAGTAAG	60.183	42.308	15.12	8.81	0.00	2.34
1124	1383	5.637810	GCAGCACATGTAGAAACTACAGTAA	59.362	40.000	15.12	0.00	0.00	2.24
1227	1486	1.468520	CTGGTTGGTAATGGCGTTCTG	59.531	52.381	0.00	0.00	0.00	3.02
1240	1499	6.197364	TGTAATTAAATAACGGCTGGTTGG	57.803	37.500	0.00	0.00	39.75	3.77
1257	1516	7.661437	TGCAGAGTATGTCTTGAACTTGTAATT	59.339	33.333	0.00	0.00	30.64	1.40
1260	1519	6.096673	TGCAGAGTATGTCTTGAACTTGTA	57.903	37.500	0.00	0.00	30.64	2.41
1270	1529	6.682611	GCTTAGAATCACTGCAGAGTATGTCT	60.683	42.308	23.35	15.91	35.00	3.41
1271	1530	5.461737	GCTTAGAATCACTGCAGAGTATGTC	59.538	44.000	23.35	9.50	0.00	3.06
1276	1535	2.836981	AGGCTTAGAATCACTGCAGAGT	59.163	45.455	23.35	0.00	0.00	3.24
1284	1707	4.320641	CCGAGTAGCTAGGCTTAGAATCAC	60.321	50.000	7.11	0.00	40.44	3.06
1292	1715	5.221402	GGTATAAAACCGAGTAGCTAGGCTT	60.221	44.000	0.00	0.00	38.15	4.35
1310	1733	4.021229	AGTATCGATCATGCCCGGTATAA	58.979	43.478	0.00	0.00	0.00	0.98
1318	1741	1.457303	GCGTTGAGTATCGATCATGCC	59.543	52.381	0.00	0.00	38.61	4.40
1360	1785	5.532406	TGAGTTCTGAATGAAGAAAACAGGG	59.468	40.000	0.00	0.00	37.90	4.45
1516	1941	4.698201	TGTTCAAACCCATCACTACTGA	57.302	40.909	0.00	0.00	0.00	3.41
1524	1949	2.299867	AGCACCAATGTTCAAACCCATC	59.700	45.455	0.00	0.00	0.00	3.51
1571	1998	3.007940	TCCAGGTGAATAACTGTGACAGG	59.992	47.826	17.92	0.00	35.51	4.00
1666	2093	4.998671	TGAACAAAACCATCTTCTTGCA	57.001	36.364	0.00	0.00	0.00	4.08
1769	2196	8.712285	AGCAATTTTTCACATCAATAATCAGG	57.288	30.769	0.00	0.00	0.00	3.86
1805	2233	4.286813	AGAAAGACCATGGATAGAGGGA	57.713	45.455	21.47	0.00	0.00	4.20
1912	2340	2.536803	CTGAATGCAACAACAACAGCAC	59.463	45.455	0.00	0.00	40.14	4.40
1922	2350	1.699083	TGAGTCCCTCTGAATGCAACA	59.301	47.619	0.00	0.00	0.00	3.33
2546	2976	4.726035	AGCAGGAGGATGAATTCATGAT	57.274	40.909	25.37	13.10	36.57	2.45
2573	3003	7.255451	CCATTCAAAAAGGACAGCTTGTAGTAA	60.255	37.037	0.00	0.00	0.00	2.24
2797	3227	1.996191	GTTCTTGATCGGCTGACACTC	59.004	52.381	0.00	0.00	0.00	3.51
3060	3706	2.262915	CAGCAGGGTCACGTCCTC	59.737	66.667	0.00	0.00	31.06	3.71
3249	3895	4.202151	GCAAAGGTGGAAGTGAAACAGAAT	60.202	41.667	0.00	0.00	41.43	2.40
3426	4081	2.959516	TCGTCACAGATTTGCTCGATT	58.040	42.857	0.00	0.00	0.00	3.34
4065	4752	7.558604	CATTTGATGGGAGGTATGTCAAAAAT	58.441	34.615	3.37	0.00	40.75	1.82
4160	4849	8.851960	TGTACTATAGTCGTGCAGATTTTTAG	57.148	34.615	9.12	0.00	0.00	1.85
4328	5026	7.012421	GGTGGATGTAATCTTCATTAGGTTCAC	59.988	40.741	0.00	0.00	44.71	3.18
4456	5492	2.503331	CACAGGTGTGGCACTTATCAA	58.497	47.619	19.83	0.00	42.10	2.57
4518	5577	4.280677	ACTGAAAATTGCCATCCGAAAAGA	59.719	37.500	0.00	0.00	0.00	2.52
4596	6039	1.269778	TGAAGCACTTCAGACCTGACG	60.270	52.381	8.99	0.59	43.90	4.35
4624	6067	7.837202	TTTCCTAAATGATAAGTACCACACG	57.163	36.000	0.00	0.00	0.00	4.49
4637	6080	8.641541	GGAATTGGCATTCTATTTCCTAAATGA	58.358	33.333	0.00	0.00	39.17	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.