Multiple sequence alignment - TraesCS1D01G235800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G235800 chr1D 100.000 9234 0 0 1 9234 325480651 325489884 0.000000e+00 17053.0
1 TraesCS1D01G235800 chr1D 90.385 156 13 2 5166 5320 7349705 7349859 4.370000e-48 204.0
2 TraesCS1D01G235800 chr1D 90.805 87 7 1 3843 3928 451978871 451978957 2.110000e-21 115.0
3 TraesCS1D01G235800 chr1B 95.874 7344 170 46 1916 9199 437597745 437605015 0.000000e+00 11760.0
4 TraesCS1D01G235800 chr1B 97.112 658 16 3 1253 1908 437596964 437597620 0.000000e+00 1107.0
5 TraesCS1D01G235800 chr1B 96.154 442 9 7 734 1168 437596226 437596666 0.000000e+00 715.0
6 TraesCS1D01G235800 chr1B 93.182 44 3 0 518 561 596252717 596252760 2.150000e-06 65.8
7 TraesCS1D01G235800 chr1A 97.440 3515 64 12 5205 8713 419032379 419028885 0.000000e+00 5969.0
8 TraesCS1D01G235800 chr1A 96.305 3275 77 10 1986 5222 419035811 419032543 0.000000e+00 5337.0
9 TraesCS1D01G235800 chr1A 92.410 527 34 3 8712 9234 419028797 419028273 0.000000e+00 747.0
10 TraesCS1D01G235800 chr1A 96.444 450 9 4 815 1257 419037631 419037182 0.000000e+00 736.0
11 TraesCS1D01G235800 chr1A 97.455 275 7 0 1555 1829 419036687 419036413 3.900000e-128 470.0
12 TraesCS1D01G235800 chr1A 87.019 416 49 4 12 424 419038818 419038405 1.820000e-126 464.0
13 TraesCS1D01G235800 chr1A 86.788 386 39 7 444 824 419038420 419038042 3.990000e-113 420.0
14 TraesCS1D01G235800 chr1A 96.800 125 4 0 1293 1417 419036810 419036686 9.400000e-50 209.0
15 TraesCS1D01G235800 chr1A 98.734 79 1 0 1830 1908 419036049 419035971 3.480000e-29 141.0
16 TraesCS1D01G235800 chr3B 87.646 429 48 4 5949 6375 750136816 750137241 2.320000e-135 494.0
17 TraesCS1D01G235800 chr3B 82.895 152 26 0 2950 3101 750136030 750136181 4.500000e-28 137.0
18 TraesCS1D01G235800 chr3D 87.646 429 46 5 5949 6375 562698218 562698641 8.330000e-135 492.0
19 TraesCS1D01G235800 chr3D 88.182 110 13 0 2971 3080 562697554 562697663 2.090000e-26 132.0
20 TraesCS1D01G235800 chr3D 92.683 41 3 0 522 562 10043504 10043544 1.000000e-04 60.2
21 TraesCS1D01G235800 chr3A 88.698 407 41 4 5949 6353 697738247 697738650 8.330000e-135 492.0
22 TraesCS1D01G235800 chr3A 85.496 131 19 0 2950 3080 697737489 697737619 4.500000e-28 137.0
23 TraesCS1D01G235800 chr3A 90.244 41 4 0 522 562 16928663 16928623 5.000000e-03 54.7
24 TraesCS1D01G235800 chr5D 90.132 152 15 0 5166 5317 213477870 213478021 2.030000e-46 198.0
25 TraesCS1D01G235800 chr5A 90.132 152 15 0 5166 5317 277725937 277726088 2.030000e-46 198.0
26 TraesCS1D01G235800 chr5A 93.258 89 6 0 3840 3928 19104989 19105077 2.090000e-26 132.0
27 TraesCS1D01G235800 chr5A 91.304 46 4 0 518 563 391516055 391516010 7.740000e-06 63.9
28 TraesCS1D01G235800 chr2D 90.132 152 15 0 5166 5317 79056318 79056167 2.030000e-46 198.0
29 TraesCS1D01G235800 chr2D 91.954 87 7 0 3844 3930 32188009 32188095 1.260000e-23 122.0
30 TraesCS1D01G235800 chr2A 90.132 152 15 0 5166 5317 141506319 141506470 2.030000e-46 198.0
31 TraesCS1D01G235800 chr7D 89.542 153 15 1 5166 5317 152649420 152649268 9.460000e-45 193.0
32 TraesCS1D01G235800 chr7D 92.045 88 7 0 3841 3928 602187765 602187852 3.500000e-24 124.0
33 TraesCS1D01G235800 chr5B 89.474 152 16 0 5166 5317 299602224 299602375 9.460000e-45 193.0
34 TraesCS1D01G235800 chr5B 94.186 86 5 0 3843 3928 20822330 20822245 2.090000e-26 132.0
35 TraesCS1D01G235800 chr7A 91.860 86 7 0 3843 3928 41436931 41437016 4.530000e-23 121.0
36 TraesCS1D01G235800 chr4A 91.011 89 7 1 3844 3931 594380336 594380248 1.630000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G235800 chr1D 325480651 325489884 9233 False 17053.000000 17053 100.000000 1 9234 1 chr1D.!!$F2 9233
1 TraesCS1D01G235800 chr1B 437596226 437605015 8789 False 4527.333333 11760 96.380000 734 9199 3 chr1B.!!$F2 8465
2 TraesCS1D01G235800 chr1A 419028273 419038818 10545 True 1610.333333 5969 94.377222 12 9234 9 chr1A.!!$R1 9222
3 TraesCS1D01G235800 chr3B 750136030 750137241 1211 False 315.500000 494 85.270500 2950 6375 2 chr3B.!!$F1 3425
4 TraesCS1D01G235800 chr3D 562697554 562698641 1087 False 312.000000 492 87.914000 2971 6375 2 chr3D.!!$F2 3404
5 TraesCS1D01G235800 chr3A 697737489 697738650 1161 False 314.500000 492 87.097000 2950 6353 2 chr3A.!!$F1 3403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
475 479 0.027455 TTCAATGAATAAGGCGCGCG 59.973 50.000 28.44 28.44 0.00 6.86 F
843 1272 1.143684 CTCCCCTCTCTCTCTCCTCAG 59.856 61.905 0.00 0.00 0.00 3.35 F
1504 2489 0.249155 GATGGCATGAATGGTTGCGG 60.249 55.000 3.81 0.00 39.78 5.69 F
1506 2491 0.322906 TGGCATGAATGGTTGCGGTA 60.323 50.000 0.00 0.00 39.78 4.02 F
1508 2493 1.001378 GGCATGAATGGTTGCGGTATC 60.001 52.381 0.00 0.00 39.78 2.24 F
1509 2494 1.949525 GCATGAATGGTTGCGGTATCT 59.050 47.619 0.00 0.00 0.00 1.98 F
1510 2495 3.138304 GCATGAATGGTTGCGGTATCTA 58.862 45.455 0.00 0.00 0.00 1.98 F
2890 4530 3.231818 CGACCCCTAACTCTGGATGTAT 58.768 50.000 0.00 0.00 0.00 2.29 F
4600 6426 2.070783 CTTTTGGCATGCATTGTGGTC 58.929 47.619 21.36 0.00 0.00 4.02 F
4954 6788 2.421739 CGCCCTTACTGGATCCGG 59.578 66.667 19.66 19.66 38.35 5.14 F
5668 7690 2.807676 TCTATATCCAGATGCTCCGCA 58.192 47.619 0.00 0.00 44.86 5.69 F
6761 8787 3.510360 ACTTCGTACACCACTGCTCTTAT 59.490 43.478 0.00 0.00 0.00 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1485 2470 0.249155 CCGCAACCATTCATGCCATC 60.249 55.000 0.00 0.0 39.39 3.51 R
2626 4266 0.678366 TGGTCGCAAGTGTGGTTGTT 60.678 50.000 0.00 0.0 39.48 2.83 R
2744 4384 1.810151 GAACGCTTGCCTTTGTATCCA 59.190 47.619 0.00 0.0 0.00 3.41 R
2785 4425 4.264172 TGGTAAAACTGGCCATAGACCATT 60.264 41.667 5.51 0.0 36.36 3.16 R
3249 4889 8.293699 AGTTACAACAAGGAAAATGTCTTCTT 57.706 30.769 0.00 0.0 0.00 2.52 R
3617 5424 8.134895 TGCTCAACTGTTTACCAAGAATAAAAG 58.865 33.333 0.00 0.0 0.00 2.27 R
4046 5870 9.399797 AGATTTTAGTATGCAGATCAATTCACA 57.600 29.630 0.00 0.0 0.00 3.58 R
5067 6901 0.320374 CTTCTACCGGGTCAGTGCAA 59.680 55.000 6.32 0.0 0.00 4.08 R
5517 7532 1.246649 CTAACACTTGCCACATGCCA 58.753 50.000 0.00 0.0 40.16 4.92 R
5828 7852 2.556189 AGACAATAATGGCGTGCAACAA 59.444 40.909 0.00 0.0 40.62 2.83 R
7682 9708 2.301577 ACGCCTGAGAAGCAAGATAC 57.698 50.000 0.00 0.0 0.00 2.24 R
8272 10298 1.458398 TGCGGTGGTGATATTTGTGG 58.542 50.000 0.00 0.0 0.00 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.125673 GGCGTGCGAGCTTTCCTA 60.126 61.111 3.26 0.00 37.29 2.94
30 31 3.682292 CTTTCCTAGCGGCCGCCTT 62.682 63.158 44.47 30.64 43.17 4.35
32 33 3.969250 TTCCTAGCGGCCGCCTTTG 62.969 63.158 44.47 29.76 43.17 2.77
53 54 1.834822 GATGACGAGGGGAGAGGGG 60.835 68.421 0.00 0.00 0.00 4.79
62 63 2.612251 GGAGAGGGGAGGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
83 84 0.035343 GGGGTAGGGTTTGCTGTCTC 60.035 60.000 0.00 0.00 0.00 3.36
88 89 1.070786 GGGTTTGCTGTCTCGGTCA 59.929 57.895 0.00 0.00 0.00 4.02
102 103 3.319198 GTCACCCTGGGAGGCGAA 61.319 66.667 22.23 0.00 32.73 4.70
177 178 6.877236 TCTTTGAGCACTTTCCAAATTTTCT 58.123 32.000 0.00 0.00 0.00 2.52
188 189 8.490311 ACTTTCCAAATTTTCTGGGTTAAATCA 58.510 29.630 0.00 0.00 34.46 2.57
190 191 9.859152 TTTCCAAATTTTCTGGGTTAAATCATT 57.141 25.926 0.00 0.00 34.46 2.57
238 240 3.685139 ATCTCTGTTGAGCCGAGAAAA 57.315 42.857 0.00 0.00 40.03 2.29
262 264 6.789262 AGCTTCATAGAAATTTGTCATTCCG 58.211 36.000 0.00 0.00 0.00 4.30
276 278 2.491693 TCATTCCGGTGCTCAAAATTCC 59.508 45.455 0.00 0.00 0.00 3.01
288 290 7.254761 GGTGCTCAAAATTCCTAAAACAAAAGG 60.255 37.037 0.00 0.00 0.00 3.11
294 296 4.546224 TTCCTAAAACAAAAGGGGAGGT 57.454 40.909 0.00 0.00 33.40 3.85
295 297 4.546224 TCCTAAAACAAAAGGGGAGGTT 57.454 40.909 0.00 0.00 33.40 3.50
299 301 4.659111 AAAACAAAAGGGGAGGTTTACG 57.341 40.909 0.00 0.00 33.46 3.18
311 313 5.074584 GGAGGTTTACGATCTCCCATATC 57.925 47.826 0.00 0.00 40.76 1.63
374 378 4.442375 CCTCTCATTTCGAGCGGTATAT 57.558 45.455 0.00 0.00 41.10 0.86
382 386 8.456904 TCATTTCGAGCGGTATATGTAAATAC 57.543 34.615 0.00 0.00 0.00 1.89
385 389 9.784680 ATTTCGAGCGGTATATGTAAATACTAG 57.215 33.333 0.00 0.00 33.62 2.57
390 394 9.771915 GAGCGGTATATGTAAATACTAGAAGTC 57.228 37.037 0.00 0.00 33.62 3.01
417 421 7.807977 TTTAAATGCCAATGAGATAGTCCTC 57.192 36.000 0.00 0.00 0.00 3.71
418 422 4.363991 AATGCCAATGAGATAGTCCTCC 57.636 45.455 0.00 0.00 32.32 4.30
420 424 1.689273 GCCAATGAGATAGTCCTCCGT 59.311 52.381 0.00 0.00 32.32 4.69
421 425 2.103263 GCCAATGAGATAGTCCTCCGTT 59.897 50.000 0.00 0.00 32.32 4.44
422 426 3.432326 GCCAATGAGATAGTCCTCCGTTT 60.432 47.826 0.00 0.00 32.32 3.60
423 427 4.372656 CCAATGAGATAGTCCTCCGTTTC 58.627 47.826 0.00 0.00 32.32 2.78
424 428 4.100189 CCAATGAGATAGTCCTCCGTTTCT 59.900 45.833 0.00 0.00 32.32 2.52
425 429 5.395768 CCAATGAGATAGTCCTCCGTTTCTT 60.396 44.000 0.00 0.00 32.32 2.52
426 430 5.941555 ATGAGATAGTCCTCCGTTTCTTT 57.058 39.130 0.00 0.00 32.32 2.52
427 431 5.740290 TGAGATAGTCCTCCGTTTCTTTT 57.260 39.130 0.00 0.00 32.32 2.27
428 432 6.110411 TGAGATAGTCCTCCGTTTCTTTTT 57.890 37.500 0.00 0.00 32.32 1.94
429 433 6.164176 TGAGATAGTCCTCCGTTTCTTTTTC 58.836 40.000 0.00 0.00 32.32 2.29
430 434 6.014499 TGAGATAGTCCTCCGTTTCTTTTTCT 60.014 38.462 0.00 0.00 32.32 2.52
431 435 6.770542 AGATAGTCCTCCGTTTCTTTTTCTT 58.229 36.000 0.00 0.00 0.00 2.52
432 436 7.225011 AGATAGTCCTCCGTTTCTTTTTCTTT 58.775 34.615 0.00 0.00 0.00 2.52
433 437 7.720074 AGATAGTCCTCCGTTTCTTTTTCTTTT 59.280 33.333 0.00 0.00 0.00 2.27
434 438 6.525578 AGTCCTCCGTTTCTTTTTCTTTTT 57.474 33.333 0.00 0.00 0.00 1.94
435 439 6.330278 AGTCCTCCGTTTCTTTTTCTTTTTG 58.670 36.000 0.00 0.00 0.00 2.44
436 440 5.005394 GTCCTCCGTTTCTTTTTCTTTTTGC 59.995 40.000 0.00 0.00 0.00 3.68
437 441 4.026886 CCTCCGTTTCTTTTTCTTTTTGCG 60.027 41.667 0.00 0.00 0.00 4.85
438 442 3.860536 TCCGTTTCTTTTTCTTTTTGCGG 59.139 39.130 0.00 0.00 37.15 5.69
439 443 3.000825 CCGTTTCTTTTTCTTTTTGCGGG 59.999 43.478 0.00 0.00 32.85 6.13
440 444 3.615056 CGTTTCTTTTTCTTTTTGCGGGT 59.385 39.130 0.00 0.00 0.00 5.28
441 445 4.259650 CGTTTCTTTTTCTTTTTGCGGGTC 60.260 41.667 0.00 0.00 0.00 4.46
442 446 3.446310 TCTTTTTCTTTTTGCGGGTCC 57.554 42.857 0.00 0.00 0.00 4.46
443 447 2.124122 CTTTTTCTTTTTGCGGGTCCG 58.876 47.619 4.85 4.85 43.09 4.79
444 448 1.390565 TTTTCTTTTTGCGGGTCCGA 58.609 45.000 14.15 0.00 42.83 4.55
445 449 1.611519 TTTCTTTTTGCGGGTCCGAT 58.388 45.000 14.15 0.00 42.83 4.18
446 450 2.476126 TTCTTTTTGCGGGTCCGATA 57.524 45.000 14.15 0.00 42.83 2.92
447 451 2.018542 TCTTTTTGCGGGTCCGATAG 57.981 50.000 14.15 2.57 42.83 2.08
448 452 1.276989 TCTTTTTGCGGGTCCGATAGT 59.723 47.619 14.15 0.00 42.83 2.12
449 453 1.664151 CTTTTTGCGGGTCCGATAGTC 59.336 52.381 14.15 0.00 42.83 2.59
450 454 0.108041 TTTTGCGGGTCCGATAGTCC 60.108 55.000 14.15 0.00 42.83 3.85
451 455 0.974010 TTTGCGGGTCCGATAGTCCT 60.974 55.000 14.15 0.00 42.83 3.85
452 456 1.389609 TTGCGGGTCCGATAGTCCTC 61.390 60.000 14.15 0.00 42.83 3.71
453 457 2.562876 GCGGGTCCGATAGTCCTCC 61.563 68.421 14.15 0.00 42.83 4.30
454 458 1.152819 CGGGTCCGATAGTCCTCCA 60.153 63.158 2.83 0.00 42.83 3.86
462 466 4.752101 GTCCGATAGTCCTCCATTTCAATG 59.248 45.833 0.00 0.00 36.17 2.82
475 479 0.027455 TTCAATGAATAAGGCGCGCG 59.973 50.000 28.44 28.44 0.00 6.86
500 506 8.007152 CGCACCTTAAAATTTAATTTTGACCAC 58.993 33.333 21.60 8.91 42.08 4.16
513 519 9.535878 TTAATTTTGACCACAAATTAGACCAAC 57.464 29.630 0.00 0.00 43.99 3.77
516 522 4.141287 TGACCACAAATTAGACCAACCAG 58.859 43.478 0.00 0.00 0.00 4.00
520 526 4.380867 CCACAAATTAGACCAACCAGATGC 60.381 45.833 0.00 0.00 0.00 3.91
524 530 5.957771 AATTAGACCAACCAGATGCTAGA 57.042 39.130 0.00 0.00 0.00 2.43
534 540 5.927281 ACCAGATGCTAGATTGCAAAAAT 57.073 34.783 1.71 0.00 46.61 1.82
605 611 8.516811 AAAATTATACTGCTAGATTCGTACCG 57.483 34.615 0.00 0.00 0.00 4.02
698 705 6.647067 TCAAAGTTGAATTTTGGAAAACGTGT 59.353 30.769 12.27 0.00 36.44 4.49
704 711 3.791973 TTTTGGAAAACGTGTGCATCT 57.208 38.095 0.00 0.00 0.00 2.90
711 718 5.182950 TGGAAAACGTGTGCATCTTATTCAT 59.817 36.000 0.00 0.00 0.00 2.57
739 746 3.594232 TGGAGGGATTACCAGGCTAAAAA 59.406 43.478 0.00 0.00 43.89 1.94
843 1272 1.143684 CTCCCCTCTCTCTCTCCTCAG 59.856 61.905 0.00 0.00 0.00 3.35
1013 1449 1.516110 ATCCCTCCACATCCTCCAAG 58.484 55.000 0.00 0.00 0.00 3.61
1278 1927 1.340991 GCTGGATCTTGGGCTGGTTTA 60.341 52.381 0.00 0.00 0.00 2.01
1367 2352 8.655935 ATTTGAGTGGACCAGATTAAGAAATT 57.344 30.769 0.00 0.00 0.00 1.82
1368 2353 8.477419 TTTGAGTGGACCAGATTAAGAAATTT 57.523 30.769 0.00 0.00 0.00 1.82
1418 2403 9.975218 ATCTTTTTAACACCTATTCCATGTACT 57.025 29.630 0.00 0.00 0.00 2.73
1419 2404 9.226606 TCTTTTTAACACCTATTCCATGTACTG 57.773 33.333 0.00 0.00 0.00 2.74
1434 2419 6.154203 CATGTACTGGAAGCTTCAGATAGA 57.846 41.667 27.02 14.01 37.60 1.98
1435 2420 5.843673 TGTACTGGAAGCTTCAGATAGAG 57.156 43.478 27.02 14.02 37.60 2.43
1436 2421 5.510430 TGTACTGGAAGCTTCAGATAGAGA 58.490 41.667 27.02 10.34 37.60 3.10
1437 2422 5.592282 TGTACTGGAAGCTTCAGATAGAGAG 59.408 44.000 27.02 11.28 37.60 3.20
1438 2423 3.384467 ACTGGAAGCTTCAGATAGAGAGC 59.616 47.826 27.02 6.91 37.60 4.09
1439 2424 3.369175 TGGAAGCTTCAGATAGAGAGCA 58.631 45.455 27.02 9.42 34.73 4.26
1440 2425 3.771479 TGGAAGCTTCAGATAGAGAGCAA 59.229 43.478 27.02 0.00 34.73 3.91
1441 2426 4.119136 GGAAGCTTCAGATAGAGAGCAAC 58.881 47.826 27.02 1.50 34.73 4.17
1442 2427 3.435105 AGCTTCAGATAGAGAGCAACG 57.565 47.619 0.00 0.00 34.73 4.10
1443 2428 2.757868 AGCTTCAGATAGAGAGCAACGT 59.242 45.455 0.00 0.00 34.73 3.99
1444 2429 3.112580 GCTTCAGATAGAGAGCAACGTC 58.887 50.000 0.00 0.00 33.43 4.34
1445 2430 3.428180 GCTTCAGATAGAGAGCAACGTCA 60.428 47.826 0.00 0.00 33.43 4.35
1446 2431 4.736168 GCTTCAGATAGAGAGCAACGTCAT 60.736 45.833 0.00 0.00 33.43 3.06
1447 2432 4.298744 TCAGATAGAGAGCAACGTCATG 57.701 45.455 0.00 0.00 0.00 3.07
1448 2433 3.696548 TCAGATAGAGAGCAACGTCATGT 59.303 43.478 0.00 0.00 0.00 3.21
1449 2434 4.881850 TCAGATAGAGAGCAACGTCATGTA 59.118 41.667 0.00 0.00 0.00 2.29
1450 2435 5.008118 TCAGATAGAGAGCAACGTCATGTAG 59.992 44.000 0.00 0.00 0.00 2.74
1451 2436 4.884744 AGATAGAGAGCAACGTCATGTAGT 59.115 41.667 0.00 0.00 0.00 2.73
1452 2437 6.017852 CAGATAGAGAGCAACGTCATGTAGTA 60.018 42.308 0.00 0.00 0.00 1.82
1453 2438 4.358494 AGAGAGCAACGTCATGTAGTAC 57.642 45.455 0.00 0.00 0.00 2.73
1454 2439 4.011023 AGAGAGCAACGTCATGTAGTACT 58.989 43.478 0.00 0.00 0.00 2.73
1455 2440 5.183969 AGAGAGCAACGTCATGTAGTACTA 58.816 41.667 0.00 0.00 0.00 1.82
1456 2441 5.294799 AGAGAGCAACGTCATGTAGTACTAG 59.705 44.000 1.87 0.00 0.00 2.57
1457 2442 4.335874 AGAGCAACGTCATGTAGTACTAGG 59.664 45.833 1.87 0.00 0.00 3.02
1458 2443 3.380637 AGCAACGTCATGTAGTACTAGGG 59.619 47.826 1.87 0.00 0.00 3.53
1459 2444 3.490419 GCAACGTCATGTAGTACTAGGGG 60.490 52.174 1.87 0.00 0.00 4.79
1460 2445 2.305009 ACGTCATGTAGTACTAGGGGC 58.695 52.381 1.87 0.00 0.00 5.80
1461 2446 2.304092 CGTCATGTAGTACTAGGGGCA 58.696 52.381 1.87 0.00 0.00 5.36
1462 2447 2.891580 CGTCATGTAGTACTAGGGGCAT 59.108 50.000 1.87 0.32 0.00 4.40
1463 2448 3.321111 CGTCATGTAGTACTAGGGGCATT 59.679 47.826 1.87 0.00 0.00 3.56
1464 2449 4.202223 CGTCATGTAGTACTAGGGGCATTT 60.202 45.833 1.87 0.00 0.00 2.32
1465 2450 5.298347 GTCATGTAGTACTAGGGGCATTTC 58.702 45.833 1.87 0.00 0.00 2.17
1466 2451 5.070580 GTCATGTAGTACTAGGGGCATTTCT 59.929 44.000 1.87 0.00 0.00 2.52
1467 2452 6.267014 GTCATGTAGTACTAGGGGCATTTCTA 59.733 42.308 1.87 0.00 0.00 2.10
1468 2453 7.016914 TCATGTAGTACTAGGGGCATTTCTAT 58.983 38.462 1.87 0.00 0.00 1.98
1469 2454 7.512746 TCATGTAGTACTAGGGGCATTTCTATT 59.487 37.037 1.87 0.00 0.00 1.73
1470 2455 7.299246 TGTAGTACTAGGGGCATTTCTATTC 57.701 40.000 1.87 0.00 0.00 1.75
1471 2456 6.842280 TGTAGTACTAGGGGCATTTCTATTCA 59.158 38.462 1.87 0.00 0.00 2.57
1472 2457 7.512746 TGTAGTACTAGGGGCATTTCTATTCAT 59.487 37.037 1.87 0.00 0.00 2.57
1473 2458 6.773638 AGTACTAGGGGCATTTCTATTCATG 58.226 40.000 0.00 0.00 0.00 3.07
1474 2459 5.653255 ACTAGGGGCATTTCTATTCATGT 57.347 39.130 0.00 0.00 0.00 3.21
1475 2460 6.018433 ACTAGGGGCATTTCTATTCATGTT 57.982 37.500 0.00 0.00 0.00 2.71
1476 2461 7.149202 ACTAGGGGCATTTCTATTCATGTTA 57.851 36.000 0.00 0.00 0.00 2.41
1477 2462 7.227156 ACTAGGGGCATTTCTATTCATGTTAG 58.773 38.462 0.00 0.00 0.00 2.34
1478 2463 6.018433 AGGGGCATTTCTATTCATGTTAGT 57.982 37.500 0.00 0.00 0.00 2.24
1479 2464 5.829924 AGGGGCATTTCTATTCATGTTAGTG 59.170 40.000 0.00 0.00 0.00 2.74
1480 2465 5.507985 GGGGCATTTCTATTCATGTTAGTGC 60.508 44.000 0.00 2.54 0.00 4.40
1481 2466 5.067674 GGGCATTTCTATTCATGTTAGTGCA 59.932 40.000 14.87 0.00 0.00 4.57
1482 2467 6.239120 GGGCATTTCTATTCATGTTAGTGCAT 60.239 38.462 14.87 0.00 0.00 3.96
1483 2468 7.205297 GGCATTTCTATTCATGTTAGTGCATT 58.795 34.615 14.87 0.00 0.00 3.56
1484 2469 7.707893 GGCATTTCTATTCATGTTAGTGCATTT 59.292 33.333 14.87 0.00 0.00 2.32
1485 2470 8.537223 GCATTTCTATTCATGTTAGTGCATTTG 58.463 33.333 0.00 0.00 0.00 2.32
1486 2471 9.791820 CATTTCTATTCATGTTAGTGCATTTGA 57.208 29.630 0.00 0.00 0.00 2.69
1488 2473 9.791820 TTTCTATTCATGTTAGTGCATTTGATG 57.208 29.630 0.00 0.00 0.00 3.07
1489 2474 7.933396 TCTATTCATGTTAGTGCATTTGATGG 58.067 34.615 0.00 0.00 0.00 3.51
1490 2475 4.374843 TCATGTTAGTGCATTTGATGGC 57.625 40.909 0.00 0.00 0.00 4.40
1491 2476 3.762823 TCATGTTAGTGCATTTGATGGCA 59.237 39.130 0.00 0.00 37.77 4.92
1492 2477 4.403113 TCATGTTAGTGCATTTGATGGCAT 59.597 37.500 0.00 0.00 42.75 4.40
1493 2478 4.112716 TGTTAGTGCATTTGATGGCATG 57.887 40.909 3.81 0.00 42.75 4.06
1494 2479 3.762823 TGTTAGTGCATTTGATGGCATGA 59.237 39.130 3.81 0.00 42.75 3.07
1495 2480 4.220163 TGTTAGTGCATTTGATGGCATGAA 59.780 37.500 3.81 0.00 42.75 2.57
1496 2481 5.105269 TGTTAGTGCATTTGATGGCATGAAT 60.105 36.000 3.81 2.03 42.75 2.57
1497 2482 3.792401 AGTGCATTTGATGGCATGAATG 58.208 40.909 20.60 20.60 42.75 2.67
1498 2483 2.869801 GTGCATTTGATGGCATGAATGG 59.130 45.455 23.67 12.12 42.75 3.16
1499 2484 2.502130 TGCATTTGATGGCATGAATGGT 59.498 40.909 23.67 5.13 34.58 3.55
1500 2485 3.055021 TGCATTTGATGGCATGAATGGTT 60.055 39.130 23.67 2.24 34.58 3.67
1501 2486 3.311322 GCATTTGATGGCATGAATGGTTG 59.689 43.478 23.67 12.18 31.78 3.77
1502 2487 2.676632 TTGATGGCATGAATGGTTGC 57.323 45.000 3.81 0.00 38.14 4.17
1503 2488 0.456628 TGATGGCATGAATGGTTGCG 59.543 50.000 3.81 0.00 39.78 4.85
1504 2489 0.249155 GATGGCATGAATGGTTGCGG 60.249 55.000 3.81 0.00 39.78 5.69
1505 2490 0.971959 ATGGCATGAATGGTTGCGGT 60.972 50.000 0.00 0.00 39.78 5.68
1506 2491 0.322906 TGGCATGAATGGTTGCGGTA 60.323 50.000 0.00 0.00 39.78 4.02
1507 2492 1.032014 GGCATGAATGGTTGCGGTAT 58.968 50.000 0.00 0.00 39.78 2.73
1508 2493 1.001378 GGCATGAATGGTTGCGGTATC 60.001 52.381 0.00 0.00 39.78 2.24
1509 2494 1.949525 GCATGAATGGTTGCGGTATCT 59.050 47.619 0.00 0.00 0.00 1.98
1510 2495 3.138304 GCATGAATGGTTGCGGTATCTA 58.862 45.455 0.00 0.00 0.00 1.98
1511 2496 3.753272 GCATGAATGGTTGCGGTATCTAT 59.247 43.478 0.00 0.00 0.00 1.98
1512 2497 4.935205 GCATGAATGGTTGCGGTATCTATA 59.065 41.667 0.00 0.00 0.00 1.31
1513 2498 5.586243 GCATGAATGGTTGCGGTATCTATAT 59.414 40.000 0.00 0.00 0.00 0.86
1514 2499 6.457392 GCATGAATGGTTGCGGTATCTATATG 60.457 42.308 0.00 0.00 0.00 1.78
1515 2500 6.109156 TGAATGGTTGCGGTATCTATATGT 57.891 37.500 0.00 0.00 0.00 2.29
1516 2501 6.163476 TGAATGGTTGCGGTATCTATATGTC 58.837 40.000 0.00 0.00 0.00 3.06
1517 2502 6.014584 TGAATGGTTGCGGTATCTATATGTCT 60.015 38.462 0.00 0.00 0.00 3.41
1518 2503 5.801531 TGGTTGCGGTATCTATATGTCTT 57.198 39.130 0.00 0.00 0.00 3.01
1519 2504 6.169557 TGGTTGCGGTATCTATATGTCTTT 57.830 37.500 0.00 0.00 0.00 2.52
1520 2505 6.588204 TGGTTGCGGTATCTATATGTCTTTT 58.412 36.000 0.00 0.00 0.00 2.27
1521 2506 6.704493 TGGTTGCGGTATCTATATGTCTTTTC 59.296 38.462 0.00 0.00 0.00 2.29
1522 2507 6.128902 GGTTGCGGTATCTATATGTCTTTTCG 60.129 42.308 0.00 0.00 0.00 3.46
1523 2508 6.321848 TGCGGTATCTATATGTCTTTTCGA 57.678 37.500 0.00 0.00 0.00 3.71
1524 2509 6.379386 TGCGGTATCTATATGTCTTTTCGAG 58.621 40.000 0.00 0.00 0.00 4.04
1525 2510 5.800941 GCGGTATCTATATGTCTTTTCGAGG 59.199 44.000 0.00 0.00 0.00 4.63
1526 2511 6.349115 GCGGTATCTATATGTCTTTTCGAGGA 60.349 42.308 0.00 0.00 0.00 3.71
1527 2512 7.244898 CGGTATCTATATGTCTTTTCGAGGAG 58.755 42.308 0.00 0.00 0.00 3.69
1528 2513 7.094720 CGGTATCTATATGTCTTTTCGAGGAGT 60.095 40.741 0.00 0.00 0.00 3.85
1529 2514 8.238631 GGTATCTATATGTCTTTTCGAGGAGTC 58.761 40.741 0.00 0.00 0.00 3.36
1530 2515 9.005777 GTATCTATATGTCTTTTCGAGGAGTCT 57.994 37.037 0.00 0.00 0.00 3.24
1532 2517 8.975663 TCTATATGTCTTTTCGAGGAGTCTAA 57.024 34.615 0.00 0.00 0.00 2.10
1533 2518 9.058174 TCTATATGTCTTTTCGAGGAGTCTAAG 57.942 37.037 0.00 0.00 0.00 2.18
1534 2519 7.883391 ATATGTCTTTTCGAGGAGTCTAAGA 57.117 36.000 0.00 0.00 0.00 2.10
1535 2520 5.630661 TGTCTTTTCGAGGAGTCTAAGAG 57.369 43.478 0.00 0.00 0.00 2.85
1536 2521 5.071370 TGTCTTTTCGAGGAGTCTAAGAGT 58.929 41.667 0.00 0.00 0.00 3.24
1537 2522 6.236409 TGTCTTTTCGAGGAGTCTAAGAGTA 58.764 40.000 0.00 0.00 0.00 2.59
1538 2523 6.713903 TGTCTTTTCGAGGAGTCTAAGAGTAA 59.286 38.462 0.00 0.00 0.00 2.24
1539 2524 7.393796 TGTCTTTTCGAGGAGTCTAAGAGTAAT 59.606 37.037 0.00 0.00 0.00 1.89
1540 2525 7.698970 GTCTTTTCGAGGAGTCTAAGAGTAATG 59.301 40.741 0.00 0.00 0.00 1.90
1541 2526 7.393796 TCTTTTCGAGGAGTCTAAGAGTAATGT 59.606 37.037 0.00 0.00 0.00 2.71
1542 2527 7.463961 TTTCGAGGAGTCTAAGAGTAATGTT 57.536 36.000 0.00 0.00 0.00 2.71
1543 2528 7.463961 TTCGAGGAGTCTAAGAGTAATGTTT 57.536 36.000 0.00 0.00 0.00 2.83
1544 2529 7.463961 TCGAGGAGTCTAAGAGTAATGTTTT 57.536 36.000 0.00 0.00 0.00 2.43
1545 2530 7.893658 TCGAGGAGTCTAAGAGTAATGTTTTT 58.106 34.615 0.00 0.00 0.00 1.94
1546 2531 7.813148 TCGAGGAGTCTAAGAGTAATGTTTTTG 59.187 37.037 0.00 0.00 0.00 2.44
1547 2532 7.063544 CGAGGAGTCTAAGAGTAATGTTTTTGG 59.936 40.741 0.00 0.00 0.00 3.28
1548 2533 7.974504 AGGAGTCTAAGAGTAATGTTTTTGGA 58.025 34.615 0.00 0.00 0.00 3.53
1549 2534 8.606830 AGGAGTCTAAGAGTAATGTTTTTGGAT 58.393 33.333 0.00 0.00 0.00 3.41
1550 2535 8.884726 GGAGTCTAAGAGTAATGTTTTTGGATC 58.115 37.037 0.00 0.00 0.00 3.36
1551 2536 8.480643 AGTCTAAGAGTAATGTTTTTGGATCG 57.519 34.615 0.00 0.00 0.00 3.69
1552 2537 7.549488 AGTCTAAGAGTAATGTTTTTGGATCGG 59.451 37.037 0.00 0.00 0.00 4.18
1553 2538 4.965119 AGAGTAATGTTTTTGGATCGGC 57.035 40.909 0.00 0.00 0.00 5.54
1684 2808 4.911160 CTCGGTAGAGTGACGGAAGTGTT 61.911 52.174 0.00 0.00 41.61 3.32
1809 2934 8.803235 AGGGACTACAAAATAAAAAGGATGAAC 58.197 33.333 0.00 0.00 36.02 3.18
1879 3367 4.577834 ACGGTTAAATGTTGACCTTTGG 57.422 40.909 1.11 0.00 0.00 3.28
1908 3396 5.977489 TCTTTCTATTTGACTCGTCCTCA 57.023 39.130 0.00 0.00 0.00 3.86
1909 3397 6.340962 TCTTTCTATTTGACTCGTCCTCAA 57.659 37.500 0.00 0.00 0.00 3.02
1911 3399 6.868864 TCTTTCTATTTGACTCGTCCTCAAAG 59.131 38.462 9.58 0.00 40.18 2.77
1912 3400 5.977489 TCTATTTGACTCGTCCTCAAAGA 57.023 39.130 9.58 5.66 40.18 2.52
1913 3401 6.340962 TCTATTTGACTCGTCCTCAAAGAA 57.659 37.500 9.58 2.69 40.18 2.52
1914 3402 6.390721 TCTATTTGACTCGTCCTCAAAGAAG 58.609 40.000 9.58 9.25 40.18 2.85
1961 3570 7.618117 TCCTCTCACTATGATAAACTTACCACA 59.382 37.037 0.00 0.00 0.00 4.17
2580 4220 9.902196 GTTTTTCCGTTATTGAAAGAAATAGGA 57.098 29.630 0.00 0.00 33.58 2.94
2606 4246 6.070656 ACCAATTCAAGTTGAAGAGGATTCA 58.929 36.000 30.75 8.00 40.05 2.57
2626 4266 5.725325 TCAAAATTGGATGCTGAATGTGA 57.275 34.783 0.00 0.00 0.00 3.58
2744 4384 5.976458 TGAAAGGAATCAAGTTGTGCTTTT 58.024 33.333 12.26 7.80 34.69 2.27
2890 4530 3.231818 CGACCCCTAACTCTGGATGTAT 58.768 50.000 0.00 0.00 0.00 2.29
3249 4889 5.848286 ATATGGTCTAGATTGGGCATTGA 57.152 39.130 0.00 0.00 0.00 2.57
3613 5420 6.639632 AGACTTTGTGCATTGTAAATGTCT 57.360 33.333 0.00 1.28 0.00 3.41
3617 5424 7.086376 ACTTTGTGCATTGTAAATGTCTCATC 58.914 34.615 0.00 0.00 0.00 2.92
4046 5870 6.509656 TGTTGAACTCGTACTTAATCAGTGT 58.490 36.000 0.00 0.00 35.97 3.55
4070 5894 8.959548 TGTGTGAATTGATCTGCATACTAAAAT 58.040 29.630 0.00 0.00 0.00 1.82
4104 5928 5.221722 GCTGTATCTCATGGGAAGGTAATCA 60.222 44.000 0.00 0.00 0.00 2.57
4158 5984 8.341173 GCAACTCATATTTAATCAAGAGTGGAG 58.659 37.037 10.76 0.00 36.55 3.86
4335 6161 7.147983 TGCACACTGGTATTTCAACTTTAGTTT 60.148 33.333 0.00 0.00 35.83 2.66
4429 6255 8.827677 GTTGATACATGGTTACTATTTCCAGTC 58.172 37.037 0.00 0.00 34.62 3.51
4600 6426 2.070783 CTTTTGGCATGCATTGTGGTC 58.929 47.619 21.36 0.00 0.00 4.02
4614 6440 4.431416 TTGTGGTCACAACTTGGAGTAT 57.569 40.909 11.95 0.00 45.42 2.12
4615 6441 4.431416 TGTGGTCACAACTTGGAGTATT 57.569 40.909 0.78 0.00 38.56 1.89
4616 6442 4.787551 TGTGGTCACAACTTGGAGTATTT 58.212 39.130 0.78 0.00 38.56 1.40
4617 6443 5.197451 TGTGGTCACAACTTGGAGTATTTT 58.803 37.500 0.78 0.00 38.56 1.82
4774 6605 4.336889 AAGACCAAGTCGACATTCTTCA 57.663 40.909 19.50 0.00 37.67 3.02
4809 6640 4.160329 TCAAGGAGATTACACACAGGAGT 58.840 43.478 0.00 0.00 0.00 3.85
4954 6788 2.421739 CGCCCTTACTGGATCCGG 59.578 66.667 19.66 19.66 38.35 5.14
5067 6901 3.637273 GCCACCACCGGAACTCCT 61.637 66.667 9.46 0.00 0.00 3.69
5081 6915 2.847234 TCCTTGCACTGACCCGGT 60.847 61.111 0.00 0.00 0.00 5.28
5101 6935 4.443621 GGTAGAAGATGCCCAAAGTAGTC 58.556 47.826 0.00 0.00 0.00 2.59
5125 6959 9.419297 GTCTAGAAGACATTTACATTGTGTACA 57.581 33.333 0.00 0.00 44.45 2.90
5240 7255 3.338249 ACGGACTGAAATGGATGAACAG 58.662 45.455 0.00 0.00 35.14 3.16
5243 7258 3.372206 GGACTGAAATGGATGAACAGACG 59.628 47.826 0.00 0.00 33.53 4.18
5319 7334 3.887621 TTCTGAACGGAGGGAGTAATG 57.112 47.619 0.00 0.00 0.00 1.90
5517 7532 7.404671 AGAAGTCATTGTTTTTGTAACAGGT 57.595 32.000 0.00 0.00 0.00 4.00
5548 7563 5.105797 TGGCAAGTGTTAGGAAAATAGCATG 60.106 40.000 0.00 0.00 0.00 4.06
5549 7564 5.105756 GGCAAGTGTTAGGAAAATAGCATGT 60.106 40.000 0.00 0.00 0.00 3.21
5550 7565 5.801947 GCAAGTGTTAGGAAAATAGCATGTG 59.198 40.000 0.00 0.00 0.00 3.21
5551 7566 5.567138 AGTGTTAGGAAAATAGCATGTGC 57.433 39.130 0.00 0.00 42.49 4.57
5552 7567 5.009631 AGTGTTAGGAAAATAGCATGTGCA 58.990 37.500 7.83 0.00 45.16 4.57
5553 7568 5.653769 AGTGTTAGGAAAATAGCATGTGCAT 59.346 36.000 7.83 0.00 45.16 3.96
5668 7690 2.807676 TCTATATCCAGATGCTCCGCA 58.192 47.619 0.00 0.00 44.86 5.69
6548 8572 7.307811 GCACTAGTCCGAAAAATAAAACAGTCT 60.308 37.037 0.00 0.00 0.00 3.24
6557 8581 9.503427 CGAAAAATAAAACAGTCTGAAGAAACT 57.497 29.630 6.91 0.00 0.00 2.66
6670 8694 6.894339 TCACTTGAGGGTCTTTAATTTTCC 57.106 37.500 0.00 0.00 0.00 3.13
6761 8787 3.510360 ACTTCGTACACCACTGCTCTTAT 59.490 43.478 0.00 0.00 0.00 1.73
6961 8987 6.381420 AGTTCCTCGGATATTTATCGATCCAT 59.619 38.462 0.00 0.00 41.61 3.41
7207 9233 7.912250 CCACTCTTTTCGAATTATGGAGAAATG 59.088 37.037 0.00 0.00 33.37 2.32
7338 9364 5.279708 GGTGATACTGTATGAGGGGATTGAG 60.280 48.000 4.79 0.00 0.00 3.02
7375 9401 4.214119 ACAAAGCTTGCACAGTACATGTAG 59.786 41.667 5.62 0.00 41.41 2.74
7682 9708 1.728971 GATGTGGTCACTGCTCTTTCG 59.271 52.381 2.66 0.00 0.00 3.46
8060 10086 3.404869 TCTAGAGAGAGGAAATGGCCA 57.595 47.619 8.56 8.56 0.00 5.36
8244 10270 0.532115 CCTTTTCTTTCCCGGCCATG 59.468 55.000 2.24 0.00 0.00 3.66
8272 10298 5.091261 TGCTTCATAGTTTCTCTCTTCCC 57.909 43.478 0.00 0.00 0.00 3.97
8314 10340 0.248907 ACCATCGACACGCCTATTCG 60.249 55.000 0.00 0.00 0.00 3.34
8364 10390 2.294979 GCAGATGTGCCTTCATCATCA 58.705 47.619 2.79 0.00 44.72 3.07
8365 10391 2.885266 GCAGATGTGCCTTCATCATCAT 59.115 45.455 2.79 0.00 44.72 2.45
8422 10448 2.749800 GCAAAGGGGAGAACTGTTCTGT 60.750 50.000 26.47 4.84 40.87 3.41
8470 10499 0.459899 CTGTTGCCTGCATGCATGAT 59.540 50.000 30.64 0.00 41.70 2.45
8567 10596 1.538687 CGAGGGTTTGTACCGAGGGT 61.539 60.000 0.00 0.00 46.04 4.34
8901 11020 7.425577 TCCTTCTCATTTGTTCGCATATATG 57.574 36.000 8.45 8.45 0.00 1.78
8912 11031 1.402968 CGCATATATGAAGGGGCATGC 59.597 52.381 17.10 9.90 36.34 4.06
8937 11056 8.414778 GCTACAAGTAGTAATCAAGTATGGACT 58.585 37.037 8.85 0.00 34.88 3.85
8981 11100 1.902508 TCCACCTGTGTCATCTTCTCC 59.097 52.381 0.00 0.00 0.00 3.71
9031 11154 3.746949 GATGACCAGGCGAGCAGGG 62.747 68.421 9.90 6.71 0.00 4.45
9060 11185 2.203280 TTGTGGCTTGGACACGGG 60.203 61.111 0.00 0.00 45.98 5.28
9081 11206 2.579201 CGACGCCCAGAATCCACT 59.421 61.111 0.00 0.00 0.00 4.00
9092 11217 2.040278 CAGAATCCACTTCCCAGTCCAA 59.960 50.000 0.00 0.00 34.11 3.53
9132 11257 5.047306 TGGAGCAGCAGTACATACATATACC 60.047 44.000 0.00 0.00 0.00 2.73
9156 11281 5.424121 AGTGAAAATGCACACTCAAGTAC 57.576 39.130 2.03 0.00 42.61 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.982372 TAGGAAAGCTCGCACGCCG 62.982 63.158 0.00 0.00 38.61 6.46
2 3 2.125673 TAGGAAAGCTCGCACGCC 60.126 61.111 0.00 0.00 0.00 5.68
3 4 3.389206 CTAGGAAAGCTCGCACGC 58.611 61.111 0.00 0.00 0.00 5.34
30 31 1.689233 CTCCCCTCGTCATCCCCAA 60.689 63.158 0.00 0.00 0.00 4.12
32 33 1.834822 CTCTCCCCTCGTCATCCCC 60.835 68.421 0.00 0.00 0.00 4.81
37 38 2.944954 TCCCCTCTCCCCTCGTCA 60.945 66.667 0.00 0.00 0.00 4.35
40 41 4.548513 CCCTCCCCTCTCCCCTCG 62.549 77.778 0.00 0.00 0.00 4.63
67 68 0.320697 ACCGAGACAGCAAACCCTAC 59.679 55.000 0.00 0.00 0.00 3.18
68 69 0.606604 GACCGAGACAGCAAACCCTA 59.393 55.000 0.00 0.00 0.00 3.53
71 72 1.228657 GGTGACCGAGACAGCAAACC 61.229 60.000 0.00 0.00 36.06 3.27
72 73 1.228657 GGGTGACCGAGACAGCAAAC 61.229 60.000 0.00 0.00 43.64 2.93
102 103 1.000993 ATCACAGACCTCCCTCGCT 59.999 57.895 0.00 0.00 0.00 4.93
104 105 1.407936 ATGATCACAGACCTCCCTCG 58.592 55.000 0.00 0.00 0.00 4.63
114 115 9.338291 CTAAACAACATGAAGAAATGATCACAG 57.662 33.333 0.00 0.00 0.00 3.66
156 157 5.358922 CCAGAAAATTTGGAAAGTGCTCAA 58.641 37.500 0.00 0.00 37.96 3.02
157 158 4.202243 CCCAGAAAATTTGGAAAGTGCTCA 60.202 41.667 0.00 0.00 37.96 4.26
158 159 4.202253 ACCCAGAAAATTTGGAAAGTGCTC 60.202 41.667 0.00 0.00 37.96 4.26
213 215 3.509967 TCTCGGCTCAACAGAGATTGTAA 59.490 43.478 0.00 0.00 43.58 2.41
223 225 1.873591 GAAGCTTTTCTCGGCTCAACA 59.126 47.619 0.00 0.00 37.87 3.33
224 226 1.873591 TGAAGCTTTTCTCGGCTCAAC 59.126 47.619 0.00 0.00 37.87 3.18
226 228 2.479566 ATGAAGCTTTTCTCGGCTCA 57.520 45.000 0.00 0.00 37.87 4.26
228 230 3.895232 TCTATGAAGCTTTTCTCGGCT 57.105 42.857 0.00 0.00 40.85 5.52
229 231 4.946784 TTTCTATGAAGCTTTTCTCGGC 57.053 40.909 0.00 0.00 0.00 5.54
238 240 6.183360 CCGGAATGACAAATTTCTATGAAGCT 60.183 38.462 0.00 0.00 0.00 3.74
262 264 7.254761 CCTTTTGTTTTAGGAATTTTGAGCACC 60.255 37.037 0.00 0.00 33.13 5.01
276 278 5.532032 TCGTAAACCTCCCCTTTTGTTTTAG 59.468 40.000 0.00 0.00 33.36 1.85
323 325 7.603784 GCCATCTCAAAACTTTCACCAAAATAT 59.396 33.333 0.00 0.00 0.00 1.28
327 329 4.405358 AGCCATCTCAAAACTTTCACCAAA 59.595 37.500 0.00 0.00 0.00 3.28
331 333 5.241728 AGGTTAGCCATCTCAAAACTTTCAC 59.758 40.000 0.00 0.00 37.19 3.18
333 335 5.707764 AGAGGTTAGCCATCTCAAAACTTTC 59.292 40.000 0.00 0.00 37.19 2.62
382 386 9.512435 CTCATTGGCATTTAAAATGACTTCTAG 57.488 33.333 0.00 0.00 35.84 2.43
385 389 8.937634 ATCTCATTGGCATTTAAAATGACTTC 57.062 30.769 0.00 0.00 35.84 3.01
390 394 8.636213 AGGACTATCTCATTGGCATTTAAAATG 58.364 33.333 0.00 0.00 33.50 2.32
402 406 5.269505 AGAAACGGAGGACTATCTCATTG 57.730 43.478 0.00 0.00 35.58 2.82
417 421 3.000825 CCCGCAAAAAGAAAAAGAAACGG 59.999 43.478 0.00 0.00 36.74 4.44
418 422 3.615056 ACCCGCAAAAAGAAAAAGAAACG 59.385 39.130 0.00 0.00 0.00 3.60
420 424 4.185394 GGACCCGCAAAAAGAAAAAGAAA 58.815 39.130 0.00 0.00 0.00 2.52
421 425 3.735514 CGGACCCGCAAAAAGAAAAAGAA 60.736 43.478 0.00 0.00 0.00 2.52
422 426 2.223618 CGGACCCGCAAAAAGAAAAAGA 60.224 45.455 0.00 0.00 0.00 2.52
423 427 2.124122 CGGACCCGCAAAAAGAAAAAG 58.876 47.619 0.00 0.00 0.00 2.27
424 428 1.749634 TCGGACCCGCAAAAAGAAAAA 59.250 42.857 3.13 0.00 39.59 1.94
425 429 1.390565 TCGGACCCGCAAAAAGAAAA 58.609 45.000 3.13 0.00 39.59 2.29
426 430 1.611519 ATCGGACCCGCAAAAAGAAA 58.388 45.000 3.13 0.00 39.59 2.52
427 431 2.289819 ACTATCGGACCCGCAAAAAGAA 60.290 45.455 3.13 0.00 39.59 2.52
428 432 1.276989 ACTATCGGACCCGCAAAAAGA 59.723 47.619 3.13 0.00 39.59 2.52
429 433 1.664151 GACTATCGGACCCGCAAAAAG 59.336 52.381 3.13 0.00 39.59 2.27
430 434 1.676615 GGACTATCGGACCCGCAAAAA 60.677 52.381 3.13 0.00 39.59 1.94
431 435 0.108041 GGACTATCGGACCCGCAAAA 60.108 55.000 3.13 0.00 39.59 2.44
432 436 0.974010 AGGACTATCGGACCCGCAAA 60.974 55.000 3.13 0.00 39.59 3.68
433 437 1.380785 AGGACTATCGGACCCGCAA 60.381 57.895 3.13 0.00 39.59 4.85
434 438 1.826921 GAGGACTATCGGACCCGCA 60.827 63.158 3.13 0.00 39.59 5.69
435 439 2.562876 GGAGGACTATCGGACCCGC 61.563 68.421 3.13 0.00 39.59 6.13
436 440 0.539901 ATGGAGGACTATCGGACCCG 60.540 60.000 1.31 1.31 41.35 5.28
437 441 1.718280 AATGGAGGACTATCGGACCC 58.282 55.000 0.00 0.00 0.00 4.46
438 442 2.698797 TGAAATGGAGGACTATCGGACC 59.301 50.000 0.00 0.00 0.00 4.46
439 443 4.402056 TTGAAATGGAGGACTATCGGAC 57.598 45.455 0.00 0.00 0.00 4.79
440 444 4.653801 TCATTGAAATGGAGGACTATCGGA 59.346 41.667 3.31 0.00 37.03 4.55
441 445 4.960938 TCATTGAAATGGAGGACTATCGG 58.039 43.478 3.31 0.00 37.03 4.18
442 446 8.607441 TTATTCATTGAAATGGAGGACTATCG 57.393 34.615 2.68 0.00 37.03 2.92
443 447 9.007901 CCTTATTCATTGAAATGGAGGACTATC 57.992 37.037 2.68 0.00 37.03 2.08
444 448 7.449704 GCCTTATTCATTGAAATGGAGGACTAT 59.550 37.037 17.64 0.00 37.03 2.12
445 449 6.772716 GCCTTATTCATTGAAATGGAGGACTA 59.227 38.462 17.64 0.00 37.03 2.59
446 450 5.595952 GCCTTATTCATTGAAATGGAGGACT 59.404 40.000 17.64 0.00 37.03 3.85
447 451 5.506317 CGCCTTATTCATTGAAATGGAGGAC 60.506 44.000 17.64 11.28 37.03 3.85
448 452 4.580167 CGCCTTATTCATTGAAATGGAGGA 59.420 41.667 17.64 0.00 37.03 3.71
449 453 4.794003 GCGCCTTATTCATTGAAATGGAGG 60.794 45.833 15.36 13.94 37.03 4.30
450 454 4.293415 GCGCCTTATTCATTGAAATGGAG 58.707 43.478 15.36 13.56 37.03 3.86
451 455 3.243035 CGCGCCTTATTCATTGAAATGGA 60.243 43.478 0.00 0.00 37.03 3.41
452 456 3.044986 CGCGCCTTATTCATTGAAATGG 58.955 45.455 0.00 7.16 37.03 3.16
453 457 2.468777 GCGCGCCTTATTCATTGAAATG 59.531 45.455 23.24 0.00 37.75 2.32
454 458 2.731217 GCGCGCCTTATTCATTGAAAT 58.269 42.857 23.24 0.00 0.00 2.17
462 466 4.591317 GGTGCGCGCGCCTTATTC 62.591 66.667 46.71 28.78 42.89 1.75
475 479 8.831550 TGTGGTCAAAATTAAATTTTAAGGTGC 58.168 29.630 7.59 3.18 40.27 5.01
500 506 6.115446 TCTAGCATCTGGTTGGTCTAATTTG 58.885 40.000 0.00 0.00 0.00 2.32
513 519 5.657474 ACATTTTTGCAATCTAGCATCTGG 58.343 37.500 0.00 0.00 45.19 3.86
534 540 9.607333 ACTCTCTTCATCCCATAATATAAGACA 57.393 33.333 0.00 0.00 0.00 3.41
545 551 9.781425 ACATATAATCTACTCTCTTCATCCCAT 57.219 33.333 0.00 0.00 0.00 4.00
681 688 4.744631 AGATGCACACGTTTTCCAAAATTC 59.255 37.500 0.00 0.00 0.00 2.17
698 705 5.471116 CCTCCATTCGAATGAATAAGATGCA 59.529 40.000 34.21 5.29 42.94 3.96
704 711 6.940298 GGTAATCCCTCCATTCGAATGAATAA 59.060 38.462 34.21 17.87 42.94 1.40
711 718 2.438021 CCTGGTAATCCCTCCATTCGAA 59.562 50.000 0.00 0.00 33.01 3.71
739 746 5.841810 TCTTTTTCATCCGCAAGTTTTGAT 58.158 33.333 0.00 0.00 0.00 2.57
843 1272 1.142748 CTCATGGCCGACTGAGGAC 59.857 63.158 17.70 0.00 40.61 3.85
1013 1449 0.885150 GCCCTCCGAAAATCCGATCC 60.885 60.000 0.00 0.00 0.00 3.36
1224 1660 2.687566 ACACCTGATCCGACCCCC 60.688 66.667 0.00 0.00 0.00 5.40
1367 2352 2.795329 GAAGACAAGGGAGATTGGCAA 58.205 47.619 0.68 0.68 40.92 4.52
1368 2353 1.339055 CGAAGACAAGGGAGATTGGCA 60.339 52.381 0.00 0.00 40.92 4.92
1415 2400 4.582656 GCTCTCTATCTGAAGCTTCCAGTA 59.417 45.833 23.42 11.77 33.57 2.74
1416 2401 3.384467 GCTCTCTATCTGAAGCTTCCAGT 59.616 47.826 23.42 11.27 33.57 4.00
1417 2402 3.384146 TGCTCTCTATCTGAAGCTTCCAG 59.616 47.826 23.42 18.89 0.00 3.86
1418 2403 3.369175 TGCTCTCTATCTGAAGCTTCCA 58.631 45.455 23.42 10.68 0.00 3.53
1419 2404 4.119136 GTTGCTCTCTATCTGAAGCTTCC 58.881 47.826 23.42 6.48 0.00 3.46
1420 2405 3.796178 CGTTGCTCTCTATCTGAAGCTTC 59.204 47.826 19.89 19.89 0.00 3.86
1421 2406 3.194542 ACGTTGCTCTCTATCTGAAGCTT 59.805 43.478 0.00 0.00 0.00 3.74
1422 2407 2.757868 ACGTTGCTCTCTATCTGAAGCT 59.242 45.455 0.60 0.00 0.00 3.74
1423 2408 3.112580 GACGTTGCTCTCTATCTGAAGC 58.887 50.000 0.00 0.00 0.00 3.86
1424 2409 4.362932 TGACGTTGCTCTCTATCTGAAG 57.637 45.455 0.00 0.00 0.00 3.02
1425 2410 4.158579 ACATGACGTTGCTCTCTATCTGAA 59.841 41.667 0.00 0.00 0.00 3.02
1426 2411 3.696548 ACATGACGTTGCTCTCTATCTGA 59.303 43.478 0.00 0.00 0.00 3.27
1427 2412 4.039151 ACATGACGTTGCTCTCTATCTG 57.961 45.455 0.00 0.00 0.00 2.90
1428 2413 4.884744 ACTACATGACGTTGCTCTCTATCT 59.115 41.667 0.00 0.00 0.00 1.98
1429 2414 5.176407 ACTACATGACGTTGCTCTCTATC 57.824 43.478 0.00 0.00 0.00 2.08
1430 2415 5.823570 AGTACTACATGACGTTGCTCTCTAT 59.176 40.000 0.00 0.00 0.00 1.98
1431 2416 5.183969 AGTACTACATGACGTTGCTCTCTA 58.816 41.667 0.00 0.00 0.00 2.43
1432 2417 4.011023 AGTACTACATGACGTTGCTCTCT 58.989 43.478 0.00 0.00 0.00 3.10
1433 2418 4.358494 AGTACTACATGACGTTGCTCTC 57.642 45.455 0.00 0.00 0.00 3.20
1434 2419 4.335874 CCTAGTACTACATGACGTTGCTCT 59.664 45.833 0.00 0.00 0.00 4.09
1435 2420 4.497674 CCCTAGTACTACATGACGTTGCTC 60.498 50.000 0.00 0.00 0.00 4.26
1436 2421 3.380637 CCCTAGTACTACATGACGTTGCT 59.619 47.826 0.00 1.22 0.00 3.91
1437 2422 3.490419 CCCCTAGTACTACATGACGTTGC 60.490 52.174 0.00 0.00 0.00 4.17
1438 2423 3.490419 GCCCCTAGTACTACATGACGTTG 60.490 52.174 0.00 0.00 0.00 4.10
1439 2424 2.692041 GCCCCTAGTACTACATGACGTT 59.308 50.000 0.00 0.00 0.00 3.99
1440 2425 2.305009 GCCCCTAGTACTACATGACGT 58.695 52.381 0.00 0.00 0.00 4.34
1441 2426 2.304092 TGCCCCTAGTACTACATGACG 58.696 52.381 0.00 0.00 0.00 4.35
1442 2427 4.957684 AATGCCCCTAGTACTACATGAC 57.042 45.455 0.00 0.00 0.00 3.06
1443 2428 5.216622 AGAAATGCCCCTAGTACTACATGA 58.783 41.667 0.00 0.00 0.00 3.07
1444 2429 5.552870 AGAAATGCCCCTAGTACTACATG 57.447 43.478 0.00 0.00 0.00 3.21
1445 2430 7.512746 TGAATAGAAATGCCCCTAGTACTACAT 59.487 37.037 0.00 0.00 0.00 2.29
1446 2431 6.842280 TGAATAGAAATGCCCCTAGTACTACA 59.158 38.462 0.00 0.00 0.00 2.74
1447 2432 7.299246 TGAATAGAAATGCCCCTAGTACTAC 57.701 40.000 0.00 0.00 0.00 2.73
1448 2433 7.512746 ACATGAATAGAAATGCCCCTAGTACTA 59.487 37.037 0.00 1.89 0.00 1.82
1449 2434 6.330250 ACATGAATAGAAATGCCCCTAGTACT 59.670 38.462 0.00 0.00 0.00 2.73
1450 2435 6.534634 ACATGAATAGAAATGCCCCTAGTAC 58.465 40.000 0.00 0.00 0.00 2.73
1451 2436 6.763715 ACATGAATAGAAATGCCCCTAGTA 57.236 37.500 0.00 0.00 0.00 1.82
1452 2437 5.653255 ACATGAATAGAAATGCCCCTAGT 57.347 39.130 0.00 0.00 0.00 2.57
1453 2438 7.173907 CACTAACATGAATAGAAATGCCCCTAG 59.826 40.741 14.41 0.00 0.00 3.02
1454 2439 6.998074 CACTAACATGAATAGAAATGCCCCTA 59.002 38.462 14.41 0.00 0.00 3.53
1455 2440 5.829924 CACTAACATGAATAGAAATGCCCCT 59.170 40.000 14.41 0.00 0.00 4.79
1456 2441 5.507985 GCACTAACATGAATAGAAATGCCCC 60.508 44.000 14.41 0.00 0.00 5.80
1457 2442 5.067674 TGCACTAACATGAATAGAAATGCCC 59.932 40.000 14.41 0.00 0.00 5.36
1458 2443 6.135290 TGCACTAACATGAATAGAAATGCC 57.865 37.500 14.41 3.81 0.00 4.40
1459 2444 8.537223 CAAATGCACTAACATGAATAGAAATGC 58.463 33.333 14.41 13.50 0.00 3.56
1460 2445 9.791820 TCAAATGCACTAACATGAATAGAAATG 57.208 29.630 14.41 6.30 0.00 2.32
1462 2447 9.791820 CATCAAATGCACTAACATGAATAGAAA 57.208 29.630 14.41 3.50 0.00 2.52
1463 2448 8.407832 CCATCAAATGCACTAACATGAATAGAA 58.592 33.333 14.41 3.75 0.00 2.10
1464 2449 7.469043 GCCATCAAATGCACTAACATGAATAGA 60.469 37.037 14.41 0.00 0.00 1.98
1465 2450 6.639686 GCCATCAAATGCACTAACATGAATAG 59.360 38.462 0.00 4.21 0.00 1.73
1466 2451 6.096564 TGCCATCAAATGCACTAACATGAATA 59.903 34.615 0.00 0.00 31.31 1.75
1467 2452 5.105269 TGCCATCAAATGCACTAACATGAAT 60.105 36.000 0.00 0.00 31.31 2.57
1468 2453 4.220163 TGCCATCAAATGCACTAACATGAA 59.780 37.500 0.00 0.00 31.31 2.57
1469 2454 3.762823 TGCCATCAAATGCACTAACATGA 59.237 39.130 0.00 0.00 31.31 3.07
1470 2455 4.112716 TGCCATCAAATGCACTAACATG 57.887 40.909 0.00 0.00 31.31 3.21
1471 2456 4.403113 TCATGCCATCAAATGCACTAACAT 59.597 37.500 0.00 0.00 40.88 2.71
1472 2457 3.762823 TCATGCCATCAAATGCACTAACA 59.237 39.130 0.00 0.00 40.88 2.41
1473 2458 4.374843 TCATGCCATCAAATGCACTAAC 57.625 40.909 0.00 0.00 40.88 2.34
1474 2459 5.353111 CATTCATGCCATCAAATGCACTAA 58.647 37.500 0.00 0.00 40.88 2.24
1475 2460 4.202172 CCATTCATGCCATCAAATGCACTA 60.202 41.667 0.00 0.00 40.88 2.74
1476 2461 3.431626 CCATTCATGCCATCAAATGCACT 60.432 43.478 0.00 0.00 40.88 4.40
1477 2462 2.869801 CCATTCATGCCATCAAATGCAC 59.130 45.455 0.00 0.00 40.88 4.57
1478 2463 2.502130 ACCATTCATGCCATCAAATGCA 59.498 40.909 0.00 0.00 42.52 3.96
1479 2464 3.188159 ACCATTCATGCCATCAAATGC 57.812 42.857 4.49 0.00 0.00 3.56
1480 2465 3.311322 GCAACCATTCATGCCATCAAATG 59.689 43.478 3.40 3.40 36.56 2.32
1481 2466 3.537580 GCAACCATTCATGCCATCAAAT 58.462 40.909 0.00 0.00 36.56 2.32
1482 2467 2.674462 CGCAACCATTCATGCCATCAAA 60.674 45.455 0.00 0.00 39.39 2.69
1483 2468 1.135053 CGCAACCATTCATGCCATCAA 60.135 47.619 0.00 0.00 39.39 2.57
1484 2469 0.456628 CGCAACCATTCATGCCATCA 59.543 50.000 0.00 0.00 39.39 3.07
1485 2470 0.249155 CCGCAACCATTCATGCCATC 60.249 55.000 0.00 0.00 39.39 3.51
1486 2471 0.971959 ACCGCAACCATTCATGCCAT 60.972 50.000 0.00 0.00 39.39 4.40
1487 2472 0.322906 TACCGCAACCATTCATGCCA 60.323 50.000 0.00 0.00 39.39 4.92
1488 2473 1.001378 GATACCGCAACCATTCATGCC 60.001 52.381 0.00 0.00 39.39 4.40
1489 2474 1.949525 AGATACCGCAACCATTCATGC 59.050 47.619 0.00 0.00 39.17 4.06
1490 2475 6.595326 ACATATAGATACCGCAACCATTCATG 59.405 38.462 0.00 0.00 0.00 3.07
1491 2476 6.711277 ACATATAGATACCGCAACCATTCAT 58.289 36.000 0.00 0.00 0.00 2.57
1492 2477 6.014584 AGACATATAGATACCGCAACCATTCA 60.015 38.462 0.00 0.00 0.00 2.57
1493 2478 6.398918 AGACATATAGATACCGCAACCATTC 58.601 40.000 0.00 0.00 0.00 2.67
1494 2479 6.360370 AGACATATAGATACCGCAACCATT 57.640 37.500 0.00 0.00 0.00 3.16
1495 2480 6.360370 AAGACATATAGATACCGCAACCAT 57.640 37.500 0.00 0.00 0.00 3.55
1496 2481 5.801531 AAGACATATAGATACCGCAACCA 57.198 39.130 0.00 0.00 0.00 3.67
1497 2482 6.128902 CGAAAAGACATATAGATACCGCAACC 60.129 42.308 0.00 0.00 0.00 3.77
1498 2483 6.639686 TCGAAAAGACATATAGATACCGCAAC 59.360 38.462 0.00 0.00 0.00 4.17
1499 2484 6.741109 TCGAAAAGACATATAGATACCGCAA 58.259 36.000 0.00 0.00 0.00 4.85
1500 2485 6.321848 TCGAAAAGACATATAGATACCGCA 57.678 37.500 0.00 0.00 0.00 5.69
1501 2486 5.800941 CCTCGAAAAGACATATAGATACCGC 59.199 44.000 0.00 0.00 0.00 5.68
1502 2487 7.094720 ACTCCTCGAAAAGACATATAGATACCG 60.095 40.741 0.99 0.00 0.00 4.02
1503 2488 8.113173 ACTCCTCGAAAAGACATATAGATACC 57.887 38.462 0.99 0.00 0.00 2.73
1504 2489 9.005777 AGACTCCTCGAAAAGACATATAGATAC 57.994 37.037 0.99 0.00 0.00 2.24
1506 2491 9.575868 TTAGACTCCTCGAAAAGACATATAGAT 57.424 33.333 0.99 0.00 0.00 1.98
1507 2492 8.975663 TTAGACTCCTCGAAAAGACATATAGA 57.024 34.615 0.99 0.00 0.00 1.98
1508 2493 9.058174 TCTTAGACTCCTCGAAAAGACATATAG 57.942 37.037 0.99 0.00 0.00 1.31
1509 2494 8.975663 TCTTAGACTCCTCGAAAAGACATATA 57.024 34.615 0.99 0.00 0.00 0.86
1510 2495 7.558444 ACTCTTAGACTCCTCGAAAAGACATAT 59.442 37.037 0.99 0.00 0.00 1.78
1511 2496 6.885376 ACTCTTAGACTCCTCGAAAAGACATA 59.115 38.462 0.99 0.00 0.00 2.29
1512 2497 5.712917 ACTCTTAGACTCCTCGAAAAGACAT 59.287 40.000 0.99 0.00 0.00 3.06
1513 2498 5.071370 ACTCTTAGACTCCTCGAAAAGACA 58.929 41.667 0.99 0.00 0.00 3.41
1514 2499 5.632244 ACTCTTAGACTCCTCGAAAAGAC 57.368 43.478 0.99 0.00 0.00 3.01
1515 2500 7.393796 ACATTACTCTTAGACTCCTCGAAAAGA 59.606 37.037 0.99 0.00 0.00 2.52
1516 2501 7.540299 ACATTACTCTTAGACTCCTCGAAAAG 58.460 38.462 0.00 0.00 0.00 2.27
1517 2502 7.463961 ACATTACTCTTAGACTCCTCGAAAA 57.536 36.000 0.00 0.00 0.00 2.29
1518 2503 7.463961 AACATTACTCTTAGACTCCTCGAAA 57.536 36.000 0.00 0.00 0.00 3.46
1519 2504 7.463961 AAACATTACTCTTAGACTCCTCGAA 57.536 36.000 0.00 0.00 0.00 3.71
1520 2505 7.463961 AAAACATTACTCTTAGACTCCTCGA 57.536 36.000 0.00 0.00 0.00 4.04
1521 2506 7.063544 CCAAAAACATTACTCTTAGACTCCTCG 59.936 40.741 0.00 0.00 0.00 4.63
1522 2507 8.095169 TCCAAAAACATTACTCTTAGACTCCTC 58.905 37.037 0.00 0.00 0.00 3.71
1523 2508 7.974504 TCCAAAAACATTACTCTTAGACTCCT 58.025 34.615 0.00 0.00 0.00 3.69
1524 2509 8.794335 ATCCAAAAACATTACTCTTAGACTCC 57.206 34.615 0.00 0.00 0.00 3.85
1525 2510 8.596380 CGATCCAAAAACATTACTCTTAGACTC 58.404 37.037 0.00 0.00 0.00 3.36
1526 2511 7.549488 CCGATCCAAAAACATTACTCTTAGACT 59.451 37.037 0.00 0.00 0.00 3.24
1527 2512 7.676572 GCCGATCCAAAAACATTACTCTTAGAC 60.677 40.741 0.00 0.00 0.00 2.59
1528 2513 6.315393 GCCGATCCAAAAACATTACTCTTAGA 59.685 38.462 0.00 0.00 0.00 2.10
1529 2514 6.316390 AGCCGATCCAAAAACATTACTCTTAG 59.684 38.462 0.00 0.00 0.00 2.18
1530 2515 6.177610 AGCCGATCCAAAAACATTACTCTTA 58.822 36.000 0.00 0.00 0.00 2.10
1531 2516 5.010282 AGCCGATCCAAAAACATTACTCTT 58.990 37.500 0.00 0.00 0.00 2.85
1532 2517 4.589908 AGCCGATCCAAAAACATTACTCT 58.410 39.130 0.00 0.00 0.00 3.24
1533 2518 4.965119 AGCCGATCCAAAAACATTACTC 57.035 40.909 0.00 0.00 0.00 2.59
1534 2519 9.436957 CTATATAGCCGATCCAAAAACATTACT 57.563 33.333 0.00 0.00 0.00 2.24
1535 2520 8.665685 CCTATATAGCCGATCCAAAAACATTAC 58.334 37.037 4.04 0.00 0.00 1.89
1536 2521 8.380099 ACCTATATAGCCGATCCAAAAACATTA 58.620 33.333 4.04 0.00 0.00 1.90
1537 2522 7.231467 ACCTATATAGCCGATCCAAAAACATT 58.769 34.615 4.04 0.00 0.00 2.71
1538 2523 6.779860 ACCTATATAGCCGATCCAAAAACAT 58.220 36.000 4.04 0.00 0.00 2.71
1539 2524 6.182507 ACCTATATAGCCGATCCAAAAACA 57.817 37.500 4.04 0.00 0.00 2.83
1540 2525 7.506328 AAACCTATATAGCCGATCCAAAAAC 57.494 36.000 4.04 0.00 0.00 2.43
1541 2526 9.802039 AATAAACCTATATAGCCGATCCAAAAA 57.198 29.630 4.04 0.00 0.00 1.94
1542 2527 9.226606 CAATAAACCTATATAGCCGATCCAAAA 57.773 33.333 4.04 0.00 0.00 2.44
1543 2528 7.335924 GCAATAAACCTATATAGCCGATCCAAA 59.664 37.037 4.04 0.00 0.00 3.28
1544 2529 6.821665 GCAATAAACCTATATAGCCGATCCAA 59.178 38.462 4.04 0.00 0.00 3.53
1545 2530 6.156256 AGCAATAAACCTATATAGCCGATCCA 59.844 38.462 4.04 0.00 0.00 3.41
1546 2531 6.583562 AGCAATAAACCTATATAGCCGATCC 58.416 40.000 4.04 0.00 0.00 3.36
1547 2532 7.982354 AGAAGCAATAAACCTATATAGCCGATC 59.018 37.037 4.04 0.00 0.00 3.69
1548 2533 7.766278 CAGAAGCAATAAACCTATATAGCCGAT 59.234 37.037 4.04 0.00 0.00 4.18
1549 2534 7.097192 CAGAAGCAATAAACCTATATAGCCGA 58.903 38.462 4.04 0.00 0.00 5.54
1550 2535 6.313905 CCAGAAGCAATAAACCTATATAGCCG 59.686 42.308 4.04 0.00 0.00 5.52
1551 2536 7.394816 TCCAGAAGCAATAAACCTATATAGCC 58.605 38.462 4.04 0.00 0.00 3.93
1552 2537 8.848474 TTCCAGAAGCAATAAACCTATATAGC 57.152 34.615 4.04 0.00 0.00 2.97
1684 2808 3.457234 GTTCAGACATCCGCATCATACA 58.543 45.455 0.00 0.00 0.00 2.29
1791 2916 8.981647 CCTCAGTTGTTCATCCTTTTTATTTTG 58.018 33.333 0.00 0.00 0.00 2.44
1809 2934 3.425162 AAGGGAGCTAAACCTCAGTTG 57.575 47.619 4.71 0.00 35.64 3.16
1879 3367 7.066374 ACGAGTCAAATAGAAAGAATGCTTC 57.934 36.000 0.00 0.00 31.82 3.86
1908 3396 8.653036 AGTAACTACTCCATCTGTACTTCTTT 57.347 34.615 0.00 0.00 0.00 2.52
1909 3397 8.653036 AAGTAACTACTCCATCTGTACTTCTT 57.347 34.615 0.00 0.00 34.99 2.52
1911 3399 7.975058 GGAAAGTAACTACTCCATCTGTACTTC 59.025 40.741 0.00 0.00 34.99 3.01
1912 3400 7.674772 AGGAAAGTAACTACTCCATCTGTACTT 59.325 37.037 0.00 0.00 34.99 2.24
1913 3401 7.183460 AGGAAAGTAACTACTCCATCTGTACT 58.817 38.462 0.00 0.00 34.99 2.73
1914 3402 7.339976 AGAGGAAAGTAACTACTCCATCTGTAC 59.660 40.741 4.87 0.00 34.99 2.90
1961 3570 5.953571 ACCAGGACTTCTTGGATAGTTTTT 58.046 37.500 14.00 0.00 45.01 1.94
2061 3670 2.936498 CTGGGTGTTGCGATAGTTAAGG 59.064 50.000 0.00 0.00 39.35 2.69
2291 3923 3.587061 TGGCCAAGAGAAACCTAAGATCA 59.413 43.478 0.61 0.00 0.00 2.92
2374 4006 5.048504 AGAGCAAATGTGGTGTCAACTATTG 60.049 40.000 0.00 0.00 35.00 1.90
2527 4167 7.608761 TGTGTGTTTCCTTCTAAGTAACTTTGT 59.391 33.333 0.00 0.00 0.00 2.83
2580 4220 6.983906 ATCCTCTTCAACTTGAATTGGTTT 57.016 33.333 16.29 8.05 35.59 3.27
2606 4246 5.856156 TGTTCACATTCAGCATCCAATTTT 58.144 33.333 0.00 0.00 0.00 1.82
2626 4266 0.678366 TGGTCGCAAGTGTGGTTGTT 60.678 50.000 0.00 0.00 39.48 2.83
2744 4384 1.810151 GAACGCTTGCCTTTGTATCCA 59.190 47.619 0.00 0.00 0.00 3.41
2785 4425 4.264172 TGGTAAAACTGGCCATAGACCATT 60.264 41.667 5.51 0.00 36.36 3.16
3249 4889 8.293699 AGTTACAACAAGGAAAATGTCTTCTT 57.706 30.769 0.00 0.00 0.00 2.52
3617 5424 8.134895 TGCTCAACTGTTTACCAAGAATAAAAG 58.865 33.333 0.00 0.00 0.00 2.27
4046 5870 9.399797 AGATTTTAGTATGCAGATCAATTCACA 57.600 29.630 0.00 0.00 0.00 3.58
4070 5894 6.070251 TCCCATGAGATACAGCAAAACTTAGA 60.070 38.462 0.00 0.00 0.00 2.10
4104 5928 7.244558 ACTAGGTAACCACTAAAACTCTACCT 58.755 38.462 0.00 0.00 40.50 3.08
4158 5984 1.268079 GAACTTTTGCCTCACTGAGCC 59.732 52.381 0.00 0.00 0.00 4.70
4335 6161 5.233083 ACCAGAGACAGAATGAATTGACA 57.767 39.130 0.00 0.00 39.69 3.58
4630 6456 4.399303 CGAGGATGCCAAATTTAACCTTCT 59.601 41.667 0.00 0.00 0.00 2.85
4754 6585 3.574396 TCTGAAGAATGTCGACTTGGTCT 59.426 43.478 17.92 8.36 0.00 3.85
4774 6605 4.104383 TCTCCTTGAAGGCATTGTTTCT 57.896 40.909 6.30 0.00 34.61 2.52
4809 6640 3.306502 GGTTCCGACTTCCTACAACATCA 60.307 47.826 0.00 0.00 0.00 3.07
4916 6747 2.599848 GCATGTGTGTCGTCTTGTTGTC 60.600 50.000 0.00 0.00 0.00 3.18
4917 6748 1.330521 GCATGTGTGTCGTCTTGTTGT 59.669 47.619 0.00 0.00 0.00 3.32
4919 6750 0.581529 CGCATGTGTGTCGTCTTGTT 59.418 50.000 0.00 0.00 0.00 2.83
5067 6901 0.320374 CTTCTACCGGGTCAGTGCAA 59.680 55.000 6.32 0.00 0.00 4.08
5081 6915 6.432581 TCTAGACTACTTTGGGCATCTTCTA 58.567 40.000 0.00 0.00 0.00 2.10
5101 6935 9.424319 AGTGTACACAATGTAAATGTCTTCTAG 57.576 33.333 27.06 0.00 34.21 2.43
5125 6959 6.876789 TGTCGTATAAACCACATTGAATCAGT 59.123 34.615 0.00 0.00 0.00 3.41
5215 7230 3.466836 TCATCCATTTCAGTCCGTATGC 58.533 45.455 0.00 0.00 0.00 3.14
5240 7255 7.149973 TGTATATAGACCCATTTTAGTGCGTC 58.850 38.462 0.00 0.00 0.00 5.19
5243 7258 7.277981 CGGATGTATATAGACCCATTTTAGTGC 59.722 40.741 0.00 0.00 0.00 4.40
5301 7316 1.482593 AGCATTACTCCCTCCGTTCAG 59.517 52.381 0.00 0.00 0.00 3.02
5517 7532 1.246649 CTAACACTTGCCACATGCCA 58.753 50.000 0.00 0.00 40.16 4.92
5536 7551 3.450578 CCACATGCACATGCTATTTTCC 58.549 45.455 10.50 0.00 42.39 3.13
5550 7565 3.641437 TTCTTAACACTTGCCACATGC 57.359 42.857 0.00 0.00 41.77 4.06
5551 7566 6.308766 GCTATTTTCTTAACACTTGCCACATG 59.691 38.462 0.00 0.00 0.00 3.21
5552 7567 6.015519 TGCTATTTTCTTAACACTTGCCACAT 60.016 34.615 0.00 0.00 0.00 3.21
5553 7568 5.300539 TGCTATTTTCTTAACACTTGCCACA 59.699 36.000 0.00 0.00 0.00 4.17
5828 7852 2.556189 AGACAATAATGGCGTGCAACAA 59.444 40.909 0.00 0.00 40.62 2.83
6557 8581 6.408107 ACGGCTTAAACAATTTCCCTTTAA 57.592 33.333 0.00 0.00 0.00 1.52
6628 8652 9.230122 TCAAGTGATAGTAATTCATCAAAGCAA 57.770 29.630 0.00 0.00 33.15 3.91
6629 8653 8.791327 TCAAGTGATAGTAATTCATCAAAGCA 57.209 30.769 0.00 0.00 33.15 3.91
6718 8742 8.343366 CGAAGTAACAGTGAATAGCAGTCTATA 58.657 37.037 0.00 0.00 34.53 1.31
6719 8743 7.148052 ACGAAGTAACAGTGAATAGCAGTCTAT 60.148 37.037 0.00 0.00 41.94 1.98
6961 8987 5.617529 GCGATGTGTGAAATTGAGAATGACA 60.618 40.000 0.00 0.00 0.00 3.58
7207 9233 9.982651 ATATGACCACTCACATTGTACTATAAC 57.017 33.333 0.00 0.00 0.00 1.89
7682 9708 2.301577 ACGCCTGAGAAGCAAGATAC 57.698 50.000 0.00 0.00 0.00 2.24
8244 10270 4.826556 AGAGAAACTATGAAGCAGTGGTC 58.173 43.478 0.00 0.00 0.00 4.02
8272 10298 1.458398 TGCGGTGGTGATATTTGTGG 58.542 50.000 0.00 0.00 0.00 4.17
8364 10390 2.473816 CAGATGTCGTTCGTGCCATAT 58.526 47.619 0.00 0.00 0.00 1.78
8365 10391 1.470805 CCAGATGTCGTTCGTGCCATA 60.471 52.381 0.00 0.00 0.00 2.74
8470 10499 1.972075 TCGGAACAACTGTGATACCCA 59.028 47.619 0.00 0.00 0.00 4.51
8614 10644 3.032017 AGGATGTGTTCTGACAACTCG 57.968 47.619 0.00 0.00 37.57 4.18
8882 11001 6.348786 CCCCTTCATATATGCGAACAAATGAG 60.349 42.308 7.92 0.00 30.14 2.90
8901 11020 2.092914 ACTACTTGTAGCATGCCCCTTC 60.093 50.000 15.66 1.17 0.00 3.46
8912 11031 9.737427 CAGTCCATACTTGATTACTACTTGTAG 57.263 37.037 6.28 6.28 31.97 2.74
8937 11056 1.678627 CCAATGAACAACGAACACCCA 59.321 47.619 0.00 0.00 0.00 4.51
9031 11154 2.953821 CCACAACGACCATGGTGC 59.046 61.111 25.52 13.00 0.00 5.01
9046 11169 4.329545 GAGCCCGTGTCCAAGCCA 62.330 66.667 0.00 0.00 0.00 4.75
9060 11185 2.586357 GATTCTGGGCGTCGGAGC 60.586 66.667 0.00 0.00 31.44 4.70
9092 11217 1.756950 CCAATGCTGCCTGCCAGAT 60.757 57.895 0.00 0.00 44.64 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.