Multiple sequence alignment - TraesCS1D01G235000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G235000 chr1D 100.000 3008 0 0 1 3008 323952352 323949345 0.000000e+00 5555
1 TraesCS1D01G235000 chr1D 89.796 98 7 3 12 108 457037041 457037136 4.070000e-24 122
2 TraesCS1D01G235000 chr3B 95.334 1693 52 7 1323 3008 473242355 473240683 0.000000e+00 2663
3 TraesCS1D01G235000 chr5D 91.868 1488 110 10 481 1965 53904056 53905535 0.000000e+00 2067
4 TraesCS1D01G235000 chr5D 91.935 1054 84 1 1956 3008 53916733 53917786 0.000000e+00 1474
5 TraesCS1D01G235000 chr3D 87.741 571 30 16 490 1057 324320828 324320295 5.470000e-177 630
6 TraesCS1D01G235000 chr3D 89.024 164 17 1 106 268 128214168 128214005 5.080000e-48 202
7 TraesCS1D01G235000 chr3D 94.118 85 4 1 22 105 105151131 105151047 8.750000e-26 128
8 TraesCS1D01G235000 chr1B 93.960 149 6 2 106 252 521219538 521219391 3.900000e-54 222
9 TraesCS1D01G235000 chr5A 91.667 156 11 2 106 260 320214244 320214398 6.530000e-52 215
10 TraesCS1D01G235000 chr4B 91.447 152 11 2 106 256 532435002 532435152 1.090000e-49 207
11 TraesCS1D01G235000 chr4B 89.899 99 8 2 9 107 172508825 172508729 3.150000e-25 126
12 TraesCS1D01G235000 chr7A 89.634 164 14 2 106 267 134162217 134162379 3.930000e-49 206
13 TraesCS1D01G235000 chr6D 89.091 165 17 1 106 269 48458134 48457970 1.410000e-48 204
14 TraesCS1D01G235000 chr2B 90.728 151 14 0 106 256 740563410 740563560 5.080000e-48 202
15 TraesCS1D01G235000 chr2B 89.423 104 4 6 12 109 726552231 726552129 1.130000e-24 124
16 TraesCS1D01G235000 chr1A 87.791 172 18 3 85 255 496854498 496854329 6.580000e-47 198
17 TraesCS1D01G235000 chr1A 92.222 90 4 3 20 107 311077253 311077341 1.130000e-24 124
18 TraesCS1D01G235000 chr5B 80.591 237 31 9 24 256 455880063 455880288 5.160000e-38 169
19 TraesCS1D01G235000 chr4A 96.429 84 3 0 25 108 18683392 18683309 4.040000e-29 139
20 TraesCS1D01G235000 chr4A 95.238 84 4 0 25 108 18649579 18649496 1.880000e-27 134
21 TraesCS1D01G235000 chr4A 91.209 91 6 2 29 118 539300715 539300626 4.070000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G235000 chr1D 323949345 323952352 3007 True 5555 5555 100.000 1 3008 1 chr1D.!!$R1 3007
1 TraesCS1D01G235000 chr3B 473240683 473242355 1672 True 2663 2663 95.334 1323 3008 1 chr3B.!!$R1 1685
2 TraesCS1D01G235000 chr5D 53904056 53905535 1479 False 2067 2067 91.868 481 1965 1 chr5D.!!$F1 1484
3 TraesCS1D01G235000 chr5D 53916733 53917786 1053 False 1474 1474 91.935 1956 3008 1 chr5D.!!$F2 1052
4 TraesCS1D01G235000 chr3D 324320295 324320828 533 True 630 630 87.741 490 1057 1 chr3D.!!$R3 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
445 446 0.034059 CCGAACAGCTCCTCAAGTGT 59.966 55.0 0.00 0.0 0.0 3.55 F
1643 1654 0.037326 CACTTGCCGGACTTCTGCTA 60.037 55.0 5.05 0.0 0.0 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1823 1834 0.255890 AATTGCATCGCTACCCCTGT 59.744 50.0 0.0 0.0 0.0 4.00 R
2819 2832 0.312416 TGAACCGCCATTTGAAACCG 59.688 50.0 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.675161 TGGATCTCAATGTAAGACCTTATGA 57.325 36.000 0.00 0.00 0.00 2.15
26 27 8.089625 TGGATCTCAATGTAAGACCTTATGAA 57.910 34.615 0.00 0.00 0.00 2.57
27 28 8.717717 TGGATCTCAATGTAAGACCTTATGAAT 58.282 33.333 0.00 0.00 0.00 2.57
28 29 9.566432 GGATCTCAATGTAAGACCTTATGAATT 57.434 33.333 0.00 0.00 0.00 2.17
33 34 9.832445 TCAATGTAAGACCTTATGAATTACTCC 57.168 33.333 0.00 0.00 0.00 3.85
34 35 9.057089 CAATGTAAGACCTTATGAATTACTCCC 57.943 37.037 0.00 0.00 0.00 4.30
35 36 7.989947 TGTAAGACCTTATGAATTACTCCCT 57.010 36.000 0.00 0.00 0.00 4.20
36 37 8.019656 TGTAAGACCTTATGAATTACTCCCTC 57.980 38.462 0.00 0.00 0.00 4.30
37 38 6.502074 AAGACCTTATGAATTACTCCCTCC 57.498 41.667 0.00 0.00 0.00 4.30
38 39 4.589374 AGACCTTATGAATTACTCCCTCCG 59.411 45.833 0.00 0.00 0.00 4.63
39 40 4.296056 ACCTTATGAATTACTCCCTCCGT 58.704 43.478 0.00 0.00 0.00 4.69
40 41 4.344390 ACCTTATGAATTACTCCCTCCGTC 59.656 45.833 0.00 0.00 0.00 4.79
41 42 4.262506 CCTTATGAATTACTCCCTCCGTCC 60.263 50.000 0.00 0.00 0.00 4.79
42 43 1.492764 TGAATTACTCCCTCCGTCCC 58.507 55.000 0.00 0.00 0.00 4.46
43 44 1.273381 TGAATTACTCCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
44 45 2.047830 GAATTACTCCCTCCGTCCCAT 58.952 52.381 0.00 0.00 0.00 4.00
45 46 3.236896 GAATTACTCCCTCCGTCCCATA 58.763 50.000 0.00 0.00 0.00 2.74
46 47 2.852714 TTACTCCCTCCGTCCCATAA 57.147 50.000 0.00 0.00 0.00 1.90
47 48 3.339713 TTACTCCCTCCGTCCCATAAT 57.660 47.619 0.00 0.00 0.00 1.28
48 49 4.474303 TTACTCCCTCCGTCCCATAATA 57.526 45.455 0.00 0.00 0.00 0.98
49 50 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
50 51 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
51 52 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
52 53 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
53 54 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
54 55 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
55 56 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
56 57 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
57 58 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
58 59 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
59 60 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
60 61 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
61 62 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
62 63 7.069569 CGTCCCATAATATAAGAGCGTTTTTG 58.930 38.462 0.00 0.00 0.00 2.44
63 64 7.042321 CGTCCCATAATATAAGAGCGTTTTTGA 60.042 37.037 0.00 0.00 0.00 2.69
64 65 8.068380 GTCCCATAATATAAGAGCGTTTTTGAC 58.932 37.037 0.00 0.00 0.00 3.18
65 66 7.771361 TCCCATAATATAAGAGCGTTTTTGACA 59.229 33.333 0.00 0.00 0.00 3.58
66 67 7.855904 CCCATAATATAAGAGCGTTTTTGACAC 59.144 37.037 0.00 0.00 0.00 3.67
67 68 8.612619 CCATAATATAAGAGCGTTTTTGACACT 58.387 33.333 0.00 0.00 0.00 3.55
71 72 8.718102 ATATAAGAGCGTTTTTGACACTATGT 57.282 30.769 0.00 0.00 0.00 2.29
83 84 4.992381 GACACTATGTCAAAAACGCTCT 57.008 40.909 4.08 0.00 46.22 4.09
84 85 5.344207 GACACTATGTCAAAAACGCTCTT 57.656 39.130 4.08 0.00 46.22 2.85
85 86 6.462073 GACACTATGTCAAAAACGCTCTTA 57.538 37.500 4.08 0.00 46.22 2.10
86 87 7.061752 GACACTATGTCAAAAACGCTCTTAT 57.938 36.000 4.08 0.00 46.22 1.73
87 88 8.181487 GACACTATGTCAAAAACGCTCTTATA 57.819 34.615 4.08 0.00 46.22 0.98
88 89 8.718102 ACACTATGTCAAAAACGCTCTTATAT 57.282 30.769 0.00 0.00 0.00 0.86
89 90 9.162764 ACACTATGTCAAAAACGCTCTTATATT 57.837 29.630 0.00 0.00 0.00 1.28
90 91 9.638300 CACTATGTCAAAAACGCTCTTATATTC 57.362 33.333 0.00 0.00 0.00 1.75
91 92 9.601217 ACTATGTCAAAAACGCTCTTATATTCT 57.399 29.630 0.00 0.00 0.00 2.40
92 93 9.855361 CTATGTCAAAAACGCTCTTATATTCTG 57.145 33.333 0.00 0.00 0.00 3.02
93 94 7.072177 TGTCAAAAACGCTCTTATATTCTGG 57.928 36.000 0.00 0.00 0.00 3.86
94 95 6.093495 TGTCAAAAACGCTCTTATATTCTGGG 59.907 38.462 0.00 0.00 0.00 4.45
95 96 6.315393 GTCAAAAACGCTCTTATATTCTGGGA 59.685 38.462 0.00 0.00 0.00 4.37
96 97 6.315393 TCAAAAACGCTCTTATATTCTGGGAC 59.685 38.462 0.00 0.00 0.00 4.46
97 98 5.615925 AAACGCTCTTATATTCTGGGACT 57.384 39.130 0.00 0.00 0.00 3.85
98 99 4.592485 ACGCTCTTATATTCTGGGACTG 57.408 45.455 0.00 0.00 0.00 3.51
99 100 4.215908 ACGCTCTTATATTCTGGGACTGA 58.784 43.478 0.00 0.00 33.53 3.41
100 101 4.279671 ACGCTCTTATATTCTGGGACTGAG 59.720 45.833 0.00 0.00 37.65 3.35
101 102 4.321601 CGCTCTTATATTCTGGGACTGAGG 60.322 50.000 0.00 0.00 37.65 3.86
102 103 4.020662 GCTCTTATATTCTGGGACTGAGGG 60.021 50.000 0.00 0.00 37.65 4.30
103 104 5.398236 CTCTTATATTCTGGGACTGAGGGA 58.602 45.833 0.00 0.00 37.65 4.20
104 105 5.398236 TCTTATATTCTGGGACTGAGGGAG 58.602 45.833 0.00 0.00 37.65 4.30
105 106 3.715648 ATATTCTGGGACTGAGGGAGT 57.284 47.619 0.00 0.00 37.65 3.85
106 107 4.834406 ATATTCTGGGACTGAGGGAGTA 57.166 45.455 0.00 0.00 37.65 2.59
107 108 2.233305 TTCTGGGACTGAGGGAGTAC 57.767 55.000 0.00 0.00 37.65 2.73
108 109 1.383963 TCTGGGACTGAGGGAGTACT 58.616 55.000 0.00 0.00 35.54 2.73
109 110 2.570098 TCTGGGACTGAGGGAGTACTA 58.430 52.381 0.00 0.00 35.54 1.82
110 111 2.241685 TCTGGGACTGAGGGAGTACTAC 59.758 54.545 0.00 0.00 35.54 2.73
111 112 1.287146 TGGGACTGAGGGAGTACTACC 59.713 57.143 17.30 17.30 35.54 3.18
113 114 2.024177 GGGACTGAGGGAGTACTACCTT 60.024 54.545 28.01 12.58 46.12 3.50
114 115 3.203934 GGGACTGAGGGAGTACTACCTTA 59.796 52.174 28.01 22.47 46.12 2.69
115 116 4.463070 GGACTGAGGGAGTACTACCTTAG 58.537 52.174 34.12 34.12 46.12 2.18
119 120 4.864726 TGAGGGAGTACTACCTTAGTTCC 58.135 47.826 28.01 14.17 46.12 3.62
120 121 4.543337 TGAGGGAGTACTACCTTAGTTCCT 59.457 45.833 28.01 2.66 46.12 3.36
121 122 5.733154 TGAGGGAGTACTACCTTAGTTCCTA 59.267 44.000 28.01 4.90 46.12 2.94
122 123 6.218315 TGAGGGAGTACTACCTTAGTTCCTAA 59.782 42.308 28.01 3.17 46.12 2.69
123 124 7.049291 AGGGAGTACTACCTTAGTTCCTAAA 57.951 40.000 22.04 0.00 42.68 1.85
124 125 7.660169 AGGGAGTACTACCTTAGTTCCTAAAT 58.340 38.462 22.04 0.00 42.68 1.40
125 126 8.795695 AGGGAGTACTACCTTAGTTCCTAAATA 58.204 37.037 22.04 0.00 42.68 1.40
126 127 9.599056 GGGAGTACTACCTTAGTTCCTAAATAT 57.401 37.037 17.74 0.00 40.14 1.28
163 164 9.961264 AGAGATTCTAATATGGACTACATACGA 57.039 33.333 0.00 0.00 44.41 3.43
166 167 9.291664 GATTCTAATATGGACTACATACGAAGC 57.708 37.037 0.00 0.00 44.41 3.86
167 168 7.754851 TCTAATATGGACTACATACGAAGCA 57.245 36.000 0.00 0.00 44.41 3.91
168 169 8.173542 TCTAATATGGACTACATACGAAGCAA 57.826 34.615 0.00 0.00 44.41 3.91
169 170 8.635328 TCTAATATGGACTACATACGAAGCAAA 58.365 33.333 0.00 0.00 44.41 3.68
170 171 9.256477 CTAATATGGACTACATACGAAGCAAAA 57.744 33.333 0.00 0.00 44.41 2.44
171 172 8.677148 AATATGGACTACATACGAAGCAAAAT 57.323 30.769 0.00 0.00 44.41 1.82
172 173 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
173 174 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
174 175 5.580691 TGGACTACATACGAAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
175 176 5.581085 GGACTACATACGAAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
176 177 6.408858 ACTACATACGAAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
177 178 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
178 179 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
179 180 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
180 181 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
181 182 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
182 183 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
183 184 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
184 185 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
185 186 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
221 222 9.182214 TGTCTATATACTTCCGTATGTAATCCC 57.818 37.037 0.00 0.00 36.97 3.85
222 223 9.406113 GTCTATATACTTCCGTATGTAATCCCT 57.594 37.037 0.00 0.00 36.97 4.20
227 228 6.989155 ACTTCCGTATGTAATCCCTATTGA 57.011 37.500 0.00 0.00 0.00 2.57
228 229 6.994221 ACTTCCGTATGTAATCCCTATTGAG 58.006 40.000 0.00 0.00 0.00 3.02
229 230 6.553852 ACTTCCGTATGTAATCCCTATTGAGT 59.446 38.462 0.00 0.00 0.00 3.41
230 231 7.727186 ACTTCCGTATGTAATCCCTATTGAGTA 59.273 37.037 0.00 0.00 0.00 2.59
231 232 8.660295 TTCCGTATGTAATCCCTATTGAGTAT 57.340 34.615 0.00 0.00 0.00 2.12
232 233 8.289939 TCCGTATGTAATCCCTATTGAGTATC 57.710 38.462 0.00 0.00 0.00 2.24
233 234 8.114102 TCCGTATGTAATCCCTATTGAGTATCT 58.886 37.037 0.00 0.00 34.92 1.98
234 235 9.404848 CCGTATGTAATCCCTATTGAGTATCTA 57.595 37.037 0.00 0.00 34.92 1.98
245 246 9.892130 CCCTATTGAGTATCTAAAAAGACTTGT 57.108 33.333 0.00 0.00 34.92 3.16
262 263 9.847224 AAAGACTTGTATTTAGGAACAGAAAGA 57.153 29.630 0.00 0.00 0.00 2.52
263 264 9.847224 AAGACTTGTATTTAGGAACAGAAAGAA 57.153 29.630 0.00 0.00 0.00 2.52
280 281 9.961265 ACAGAAAGAATATATCATTTACGACGA 57.039 29.630 0.00 0.00 0.00 4.20
285 286 9.961265 AAGAATATATCATTTACGACGAAGACA 57.039 29.630 0.00 0.00 0.00 3.41
291 292 9.908152 ATATCATTTACGACGAAGACATAATCA 57.092 29.630 0.00 0.00 0.00 2.57
292 293 8.642908 ATCATTTACGACGAAGACATAATCAA 57.357 30.769 0.00 0.00 0.00 2.57
293 294 8.115491 TCATTTACGACGAAGACATAATCAAG 57.885 34.615 0.00 0.00 0.00 3.02
294 295 7.971722 TCATTTACGACGAAGACATAATCAAGA 59.028 33.333 0.00 0.00 0.00 3.02
295 296 8.755941 CATTTACGACGAAGACATAATCAAGAT 58.244 33.333 0.00 0.00 0.00 2.40
296 297 8.697846 TTTACGACGAAGACATAATCAAGATT 57.302 30.769 0.00 0.52 34.93 2.40
297 298 8.697846 TTACGACGAAGACATAATCAAGATTT 57.302 30.769 0.00 0.00 32.50 2.17
298 299 9.791820 TTACGACGAAGACATAATCAAGATTTA 57.208 29.630 0.00 0.00 32.50 1.40
299 300 8.341477 ACGACGAAGACATAATCAAGATTTAG 57.659 34.615 0.00 0.00 32.50 1.85
300 301 7.435488 ACGACGAAGACATAATCAAGATTTAGG 59.565 37.037 0.00 0.00 32.50 2.69
301 302 7.096023 CGACGAAGACATAATCAAGATTTAGGG 60.096 40.741 0.02 0.00 32.50 3.53
302 303 6.483640 ACGAAGACATAATCAAGATTTAGGGC 59.516 38.462 0.02 0.00 32.50 5.19
303 304 6.073003 CGAAGACATAATCAAGATTTAGGGCC 60.073 42.308 0.00 0.00 32.50 5.80
304 305 6.521527 AGACATAATCAAGATTTAGGGCCT 57.478 37.500 12.58 12.58 32.50 5.19
305 306 6.302269 AGACATAATCAAGATTTAGGGCCTG 58.698 40.000 18.53 0.00 32.50 4.85
306 307 6.018433 ACATAATCAAGATTTAGGGCCTGT 57.982 37.500 18.53 1.24 32.50 4.00
307 308 6.435164 ACATAATCAAGATTTAGGGCCTGTT 58.565 36.000 18.53 0.00 32.50 3.16
308 309 6.897413 ACATAATCAAGATTTAGGGCCTGTTT 59.103 34.615 18.53 0.00 32.50 2.83
309 310 5.665916 AATCAAGATTTAGGGCCTGTTTG 57.334 39.130 18.53 12.76 0.00 2.93
310 311 4.380843 TCAAGATTTAGGGCCTGTTTGA 57.619 40.909 18.53 14.76 0.00 2.69
311 312 4.735369 TCAAGATTTAGGGCCTGTTTGAA 58.265 39.130 18.53 0.00 0.00 2.69
312 313 4.766891 TCAAGATTTAGGGCCTGTTTGAAG 59.233 41.667 18.53 1.39 0.00 3.02
313 314 4.388577 AGATTTAGGGCCTGTTTGAAGT 57.611 40.909 18.53 0.00 0.00 3.01
314 315 4.336280 AGATTTAGGGCCTGTTTGAAGTC 58.664 43.478 18.53 8.35 0.00 3.01
315 316 2.579410 TTAGGGCCTGTTTGAAGTCC 57.421 50.000 18.53 0.00 0.00 3.85
316 317 0.696501 TAGGGCCTGTTTGAAGTCCC 59.303 55.000 18.53 0.00 0.00 4.46
317 318 1.068352 AGGGCCTGTTTGAAGTCCCT 61.068 55.000 4.50 0.00 39.16 4.20
318 319 0.609406 GGGCCTGTTTGAAGTCCCTC 60.609 60.000 0.84 0.00 0.00 4.30
319 320 0.609406 GGCCTGTTTGAAGTCCCTCC 60.609 60.000 0.00 0.00 0.00 4.30
320 321 0.609406 GCCTGTTTGAAGTCCCTCCC 60.609 60.000 0.00 0.00 0.00 4.30
321 322 0.321653 CCTGTTTGAAGTCCCTCCCG 60.322 60.000 0.00 0.00 0.00 5.14
322 323 0.955919 CTGTTTGAAGTCCCTCCCGC 60.956 60.000 0.00 0.00 0.00 6.13
323 324 1.072505 GTTTGAAGTCCCTCCCGCA 59.927 57.895 0.00 0.00 0.00 5.69
324 325 1.072505 TTTGAAGTCCCTCCCGCAC 59.927 57.895 0.00 0.00 0.00 5.34
325 326 2.406002 TTTGAAGTCCCTCCCGCACC 62.406 60.000 0.00 0.00 0.00 5.01
326 327 4.452733 GAAGTCCCTCCCGCACCG 62.453 72.222 0.00 0.00 0.00 4.94
332 333 4.003788 CCTCCCGCACCGTGACTT 62.004 66.667 1.65 0.00 0.00 3.01
333 334 2.432628 CTCCCGCACCGTGACTTC 60.433 66.667 1.65 0.00 0.00 3.01
334 335 4.351938 TCCCGCACCGTGACTTCG 62.352 66.667 1.65 0.00 0.00 3.79
337 338 3.470567 CGCACCGTGACTTCGCTC 61.471 66.667 1.65 0.00 0.00 5.03
338 339 2.049063 GCACCGTGACTTCGCTCT 60.049 61.111 1.65 0.00 0.00 4.09
339 340 1.664965 GCACCGTGACTTCGCTCTT 60.665 57.895 1.65 0.00 0.00 2.85
340 341 1.891060 GCACCGTGACTTCGCTCTTG 61.891 60.000 1.65 0.00 0.00 3.02
341 342 1.006102 ACCGTGACTTCGCTCTTGG 60.006 57.895 0.00 0.00 0.00 3.61
342 343 1.289066 CCGTGACTTCGCTCTTGGA 59.711 57.895 0.00 0.00 0.00 3.53
343 344 0.734253 CCGTGACTTCGCTCTTGGAG 60.734 60.000 0.00 0.00 0.00 3.86
352 353 4.937193 CTCTTGGAGCAGCTGGAG 57.063 61.111 17.12 8.41 0.00 3.86
353 354 1.449956 CTCTTGGAGCAGCTGGAGC 60.450 63.158 17.12 0.07 42.49 4.70
354 355 2.438075 CTTGGAGCAGCTGGAGCC 60.438 66.667 17.12 0.00 43.38 4.70
355 356 3.251509 TTGGAGCAGCTGGAGCCA 61.252 61.111 17.12 0.00 43.38 4.75
356 357 3.557903 TTGGAGCAGCTGGAGCCAC 62.558 63.158 17.12 0.00 43.38 5.01
357 358 4.025858 GGAGCAGCTGGAGCCACA 62.026 66.667 17.12 0.00 43.38 4.17
358 359 2.436292 GAGCAGCTGGAGCCACAG 60.436 66.667 17.12 1.08 43.38 3.66
359 360 3.247648 AGCAGCTGGAGCCACAGT 61.248 61.111 17.12 0.00 43.38 3.55
360 361 2.282040 GCAGCTGGAGCCACAGTT 60.282 61.111 17.12 0.00 43.38 3.16
361 362 1.900498 GCAGCTGGAGCCACAGTTT 60.900 57.895 17.12 0.00 43.38 2.66
362 363 0.606401 GCAGCTGGAGCCACAGTTTA 60.606 55.000 17.12 0.00 43.38 2.01
363 364 1.896220 CAGCTGGAGCCACAGTTTAA 58.104 50.000 5.57 0.00 43.38 1.52
364 365 2.229792 CAGCTGGAGCCACAGTTTAAA 58.770 47.619 5.57 0.00 43.38 1.52
365 366 2.821969 CAGCTGGAGCCACAGTTTAAAT 59.178 45.455 5.57 0.00 43.38 1.40
366 367 3.256631 CAGCTGGAGCCACAGTTTAAATT 59.743 43.478 5.57 0.00 43.38 1.82
367 368 3.897505 AGCTGGAGCCACAGTTTAAATTT 59.102 39.130 7.05 0.00 43.38 1.82
368 369 5.048083 CAGCTGGAGCCACAGTTTAAATTTA 60.048 40.000 5.57 0.00 43.38 1.40
369 370 5.716703 AGCTGGAGCCACAGTTTAAATTTAT 59.283 36.000 0.00 0.00 43.38 1.40
370 371 5.807011 GCTGGAGCCACAGTTTAAATTTATG 59.193 40.000 0.00 0.00 40.59 1.90
371 372 6.350110 GCTGGAGCCACAGTTTAAATTTATGA 60.350 38.462 0.00 0.00 40.59 2.15
372 373 7.531857 TGGAGCCACAGTTTAAATTTATGAA 57.468 32.000 0.00 0.00 0.00 2.57
373 374 7.601856 TGGAGCCACAGTTTAAATTTATGAAG 58.398 34.615 0.00 0.00 0.00 3.02
374 375 6.531594 GGAGCCACAGTTTAAATTTATGAAGC 59.468 38.462 0.00 4.09 0.00 3.86
375 376 6.092748 AGCCACAGTTTAAATTTATGAAGCG 58.907 36.000 0.00 0.00 0.00 4.68
376 377 5.288472 GCCACAGTTTAAATTTATGAAGCGG 59.712 40.000 0.00 0.00 0.00 5.52
377 378 5.804979 CCACAGTTTAAATTTATGAAGCGGG 59.195 40.000 0.00 0.00 0.00 6.13
378 379 5.804979 CACAGTTTAAATTTATGAAGCGGGG 59.195 40.000 0.00 0.00 0.00 5.73
379 380 5.712917 ACAGTTTAAATTTATGAAGCGGGGA 59.287 36.000 0.00 0.00 0.00 4.81
380 381 6.209788 ACAGTTTAAATTTATGAAGCGGGGAA 59.790 34.615 0.00 0.00 0.00 3.97
381 382 7.093992 CAGTTTAAATTTATGAAGCGGGGAAA 58.906 34.615 0.00 0.00 0.00 3.13
382 383 7.062956 CAGTTTAAATTTATGAAGCGGGGAAAC 59.937 37.037 0.00 0.00 0.00 2.78
383 384 6.591750 TTAAATTTATGAAGCGGGGAAACA 57.408 33.333 0.00 0.00 0.00 2.83
384 385 4.718940 AATTTATGAAGCGGGGAAACAG 57.281 40.909 0.00 0.00 0.00 3.16
385 386 2.122783 TTATGAAGCGGGGAAACAGG 57.877 50.000 0.00 0.00 0.00 4.00
386 387 0.988832 TATGAAGCGGGGAAACAGGT 59.011 50.000 0.00 0.00 0.00 4.00
387 388 0.988832 ATGAAGCGGGGAAACAGGTA 59.011 50.000 0.00 0.00 0.00 3.08
388 389 0.035739 TGAAGCGGGGAAACAGGTAC 59.964 55.000 0.00 0.00 0.00 3.34
389 390 0.323957 GAAGCGGGGAAACAGGTACT 59.676 55.000 0.00 0.00 43.88 2.73
390 391 0.323957 AAGCGGGGAAACAGGTACTC 59.676 55.000 0.00 0.00 34.60 2.59
391 392 1.078637 GCGGGGAAACAGGTACTCC 60.079 63.158 0.00 0.00 34.60 3.85
392 393 1.217244 CGGGGAAACAGGTACTCCG 59.783 63.158 0.00 0.00 34.60 4.63
393 394 1.078637 GGGGAAACAGGTACTCCGC 60.079 63.158 0.00 0.00 34.60 5.54
394 395 1.675219 GGGAAACAGGTACTCCGCA 59.325 57.895 0.00 0.00 34.60 5.69
395 396 0.252197 GGGAAACAGGTACTCCGCAT 59.748 55.000 0.00 0.00 34.60 4.73
396 397 1.483415 GGGAAACAGGTACTCCGCATA 59.517 52.381 0.00 0.00 34.60 3.14
397 398 2.104281 GGGAAACAGGTACTCCGCATAT 59.896 50.000 0.00 0.00 34.60 1.78
398 399 3.391049 GGAAACAGGTACTCCGCATATC 58.609 50.000 0.00 0.00 34.60 1.63
399 400 3.069729 GGAAACAGGTACTCCGCATATCT 59.930 47.826 0.00 0.00 34.60 1.98
400 401 4.443034 GGAAACAGGTACTCCGCATATCTT 60.443 45.833 0.00 0.00 34.60 2.40
401 402 4.755266 AACAGGTACTCCGCATATCTTT 57.245 40.909 0.00 0.00 34.60 2.52
402 403 4.060038 ACAGGTACTCCGCATATCTTTG 57.940 45.455 0.00 0.00 34.60 2.77
403 404 3.181465 ACAGGTACTCCGCATATCTTTGG 60.181 47.826 0.00 0.00 34.60 3.28
404 405 3.069586 CAGGTACTCCGCATATCTTTGGA 59.930 47.826 0.00 0.00 34.60 3.53
405 406 3.904339 AGGTACTCCGCATATCTTTGGAT 59.096 43.478 0.00 0.00 39.05 3.41
406 407 4.348168 AGGTACTCCGCATATCTTTGGATT 59.652 41.667 0.00 0.00 39.05 3.01
407 408 5.063880 GGTACTCCGCATATCTTTGGATTT 58.936 41.667 0.00 0.00 33.71 2.17
408 409 5.049405 GGTACTCCGCATATCTTTGGATTTG 60.049 44.000 0.00 0.00 35.16 2.32
409 410 3.885297 ACTCCGCATATCTTTGGATTTGG 59.115 43.478 0.00 0.00 33.51 3.28
410 411 2.622942 TCCGCATATCTTTGGATTTGGC 59.377 45.455 0.00 0.00 33.51 4.52
411 412 2.605338 CCGCATATCTTTGGATTTGGCG 60.605 50.000 0.00 0.00 40.59 5.69
412 413 2.605338 CGCATATCTTTGGATTTGGCGG 60.605 50.000 0.00 0.00 39.01 6.13
413 414 2.622942 GCATATCTTTGGATTTGGCGGA 59.377 45.455 0.00 0.00 33.51 5.54
414 415 3.304928 GCATATCTTTGGATTTGGCGGAG 60.305 47.826 0.00 0.00 33.51 4.63
415 416 2.297701 TATCTTTGGATTTGGCGGAGC 58.702 47.619 0.00 0.00 42.66 4.70
427 428 4.462280 CGGAGCCGGTGGTTACCC 62.462 72.222 1.90 0.00 44.53 3.69
428 429 4.462280 GGAGCCGGTGGTTACCCG 62.462 72.222 1.90 0.00 44.53 5.28
434 435 3.976758 GGTGGTTACCCGAACAGC 58.023 61.111 0.00 0.00 41.36 4.40
435 436 1.373812 GGTGGTTACCCGAACAGCT 59.626 57.895 0.00 0.00 41.36 4.24
436 437 0.672711 GGTGGTTACCCGAACAGCTC 60.673 60.000 0.00 0.00 41.36 4.09
437 438 0.672711 GTGGTTACCCGAACAGCTCC 60.673 60.000 0.00 0.00 40.09 4.70
438 439 0.834687 TGGTTACCCGAACAGCTCCT 60.835 55.000 0.00 0.00 40.09 3.69
439 440 0.108281 GGTTACCCGAACAGCTCCTC 60.108 60.000 0.00 0.00 40.09 3.71
440 441 0.606604 GTTACCCGAACAGCTCCTCA 59.393 55.000 0.00 0.00 38.02 3.86
441 442 1.001633 GTTACCCGAACAGCTCCTCAA 59.998 52.381 0.00 0.00 38.02 3.02
442 443 0.895530 TACCCGAACAGCTCCTCAAG 59.104 55.000 0.00 0.00 0.00 3.02
443 444 1.122019 ACCCGAACAGCTCCTCAAGT 61.122 55.000 0.00 0.00 0.00 3.16
444 445 0.671781 CCCGAACAGCTCCTCAAGTG 60.672 60.000 0.00 0.00 0.00 3.16
445 446 0.034059 CCGAACAGCTCCTCAAGTGT 59.966 55.000 0.00 0.00 0.00 3.55
446 447 1.143305 CGAACAGCTCCTCAAGTGTG 58.857 55.000 0.00 0.00 0.00 3.82
447 448 1.269778 CGAACAGCTCCTCAAGTGTGA 60.270 52.381 0.00 0.00 0.00 3.58
448 449 2.611473 CGAACAGCTCCTCAAGTGTGAT 60.611 50.000 0.00 0.00 31.85 3.06
449 450 3.406764 GAACAGCTCCTCAAGTGTGATT 58.593 45.455 0.00 0.00 31.85 2.57
450 451 4.569943 GAACAGCTCCTCAAGTGTGATTA 58.430 43.478 0.00 0.00 31.85 1.75
451 452 4.199432 ACAGCTCCTCAAGTGTGATTAG 57.801 45.455 0.00 0.00 31.85 1.73
452 453 3.834813 ACAGCTCCTCAAGTGTGATTAGA 59.165 43.478 0.00 0.00 31.85 2.10
453 454 4.284490 ACAGCTCCTCAAGTGTGATTAGAA 59.716 41.667 0.00 0.00 31.85 2.10
454 455 5.221722 ACAGCTCCTCAAGTGTGATTAGAAA 60.222 40.000 0.00 0.00 31.85 2.52
455 456 5.702670 CAGCTCCTCAAGTGTGATTAGAAAA 59.297 40.000 0.00 0.00 31.85 2.29
456 457 6.205464 CAGCTCCTCAAGTGTGATTAGAAAAA 59.795 38.462 0.00 0.00 31.85 1.94
457 458 6.429385 AGCTCCTCAAGTGTGATTAGAAAAAG 59.571 38.462 0.00 0.00 31.85 2.27
458 459 6.348868 GCTCCTCAAGTGTGATTAGAAAAAGG 60.349 42.308 0.00 0.00 31.85 3.11
459 460 6.003950 TCCTCAAGTGTGATTAGAAAAAGGG 58.996 40.000 0.00 0.00 31.85 3.95
460 461 6.003950 CCTCAAGTGTGATTAGAAAAAGGGA 58.996 40.000 0.00 0.00 31.85 4.20
461 462 6.660949 CCTCAAGTGTGATTAGAAAAAGGGAT 59.339 38.462 0.00 0.00 31.85 3.85
462 463 7.177392 CCTCAAGTGTGATTAGAAAAAGGGATT 59.823 37.037 0.00 0.00 31.85 3.01
463 464 7.885297 TCAAGTGTGATTAGAAAAAGGGATTG 58.115 34.615 0.00 0.00 0.00 2.67
464 465 6.272822 AGTGTGATTAGAAAAAGGGATTGC 57.727 37.500 0.00 0.00 0.00 3.56
465 466 6.012745 AGTGTGATTAGAAAAAGGGATTGCT 58.987 36.000 0.00 0.00 0.00 3.91
466 467 6.494835 AGTGTGATTAGAAAAAGGGATTGCTT 59.505 34.615 0.00 0.00 0.00 3.91
467 468 7.669722 AGTGTGATTAGAAAAAGGGATTGCTTA 59.330 33.333 0.00 0.00 0.00 3.09
468 469 7.755373 GTGTGATTAGAAAAAGGGATTGCTTAC 59.245 37.037 0.00 0.00 0.00 2.34
469 470 6.967199 GTGATTAGAAAAAGGGATTGCTTACG 59.033 38.462 0.00 0.00 0.00 3.18
470 471 5.890424 TTAGAAAAAGGGATTGCTTACGG 57.110 39.130 0.00 0.00 0.00 4.02
471 472 3.763057 AGAAAAAGGGATTGCTTACGGT 58.237 40.909 0.00 0.00 0.00 4.83
472 473 4.149598 AGAAAAAGGGATTGCTTACGGTT 58.850 39.130 0.00 0.00 0.00 4.44
473 474 4.217767 AGAAAAAGGGATTGCTTACGGTTC 59.782 41.667 0.00 0.00 0.00 3.62
474 475 2.871096 AAGGGATTGCTTACGGTTCA 57.129 45.000 0.00 0.00 0.00 3.18
475 476 2.109425 AGGGATTGCTTACGGTTCAC 57.891 50.000 0.00 0.00 0.00 3.18
476 477 1.628846 AGGGATTGCTTACGGTTCACT 59.371 47.619 0.00 0.00 0.00 3.41
477 478 2.007608 GGGATTGCTTACGGTTCACTC 58.992 52.381 0.00 0.00 0.00 3.51
478 479 1.659098 GGATTGCTTACGGTTCACTCG 59.341 52.381 0.00 0.00 0.00 4.18
479 480 2.334838 GATTGCTTACGGTTCACTCGT 58.665 47.619 0.00 0.00 43.64 4.18
567 568 2.524306 GACAATCACCAAATCCCACCA 58.476 47.619 0.00 0.00 0.00 4.17
570 571 3.909364 ACAATCACCAAATCCCACCAAAT 59.091 39.130 0.00 0.00 0.00 2.32
574 575 2.636893 CACCAAATCCCACCAAATTCCA 59.363 45.455 0.00 0.00 0.00 3.53
584 585 3.694072 CCACCAAATTCCATCGCTTTCTA 59.306 43.478 0.00 0.00 0.00 2.10
603 604 4.340617 TCTAACCCAATTCCATCGCTTTT 58.659 39.130 0.00 0.00 0.00 2.27
622 623 5.694674 TTTTCAACAACTTTCAACATCGC 57.305 34.783 0.00 0.00 0.00 4.58
624 625 2.034053 TCAACAACTTTCAACATCGCCC 59.966 45.455 0.00 0.00 0.00 6.13
697 700 2.668457 CTGTTGAATCAGTGTAGGCGAC 59.332 50.000 0.00 0.00 0.00 5.19
699 702 2.654749 TGAATCAGTGTAGGCGACAG 57.345 50.000 0.00 0.00 39.29 3.51
703 706 1.166129 TCAGTGTAGGCGACAGTCTC 58.834 55.000 5.01 0.00 39.89 3.36
712 715 0.241481 GCGACAGTCTCTCCGTTTCT 59.759 55.000 0.00 0.00 0.00 2.52
723 726 0.675083 TCCGTTTCTGCCACGAACTA 59.325 50.000 0.00 0.00 40.20 2.24
741 744 4.505324 ACTAAGGCAGAAGGGGAAATAC 57.495 45.455 0.00 0.00 0.00 1.89
795 798 2.800544 CCATCTACAGGCGTATTTTCCG 59.199 50.000 0.00 0.00 0.00 4.30
815 818 4.055360 CCGTTTTTCCTTTCCAATCCAAC 58.945 43.478 0.00 0.00 0.00 3.77
818 821 5.620206 GTTTTTCCTTTCCAATCCAACCAT 58.380 37.500 0.00 0.00 0.00 3.55
827 832 4.792068 TCCAATCCAACCATACTTCCATC 58.208 43.478 0.00 0.00 0.00 3.51
828 833 4.478317 TCCAATCCAACCATACTTCCATCT 59.522 41.667 0.00 0.00 0.00 2.90
829 834 5.669904 TCCAATCCAACCATACTTCCATCTA 59.330 40.000 0.00 0.00 0.00 1.98
1057 1064 1.670791 TGGACGAAGGAACACAAACC 58.329 50.000 0.00 0.00 0.00 3.27
1069 1076 1.072331 ACACAAACCTAGCAGGGTCAG 59.928 52.381 7.06 3.58 30.80 3.51
1133 1140 2.727103 CGAAGGAGGCCCTAGAGAG 58.273 63.158 0.00 0.00 43.48 3.20
1231 1238 1.066143 TCCGAGATGAAGCAGGGAAAC 60.066 52.381 0.00 0.00 0.00 2.78
1235 1242 4.253685 CGAGATGAAGCAGGGAAACTTAA 58.746 43.478 0.00 0.00 0.00 1.85
1273 1280 5.310857 AGACCTTGGACTTTCAATAAGAGGT 59.689 40.000 0.00 0.00 0.00 3.85
1281 1288 6.490381 GGACTTTCAATAAGAGGTTTCTGGTT 59.510 38.462 0.00 0.00 32.79 3.67
1288 1295 6.884280 ATAAGAGGTTTCTGGTTGTTGAAG 57.116 37.500 0.00 0.00 32.79 3.02
1308 1315 5.691305 TGAAGATTTTGATCCAGCAAAAACG 59.309 36.000 6.80 0.00 46.91 3.60
1425 1436 1.681229 AGGAAATTGGGGAGGTGCTA 58.319 50.000 0.00 0.00 0.00 3.49
1590 1601 4.338118 ACAGGCGAAGAAAAGAACAATGAA 59.662 37.500 0.00 0.00 0.00 2.57
1632 1643 8.903570 TTTTATTTACATATGAACACTTGCCG 57.096 30.769 10.38 0.00 0.00 5.69
1642 1653 1.302033 CACTTGCCGGACTTCTGCT 60.302 57.895 5.05 0.00 0.00 4.24
1643 1654 0.037326 CACTTGCCGGACTTCTGCTA 60.037 55.000 5.05 0.00 0.00 3.49
1752 1763 0.908198 CAGAAGACTGGGGAAGGAGG 59.092 60.000 0.00 0.00 40.14 4.30
1823 1834 4.534500 TGGAAAGAATAGTACTGGAGGCAA 59.466 41.667 5.39 0.00 0.00 4.52
1942 1953 6.813152 CCCACTAAATAAACAAGCAAATGAGG 59.187 38.462 0.00 0.00 0.00 3.86
1944 1955 8.087750 CCACTAAATAAACAAGCAAATGAGGAA 58.912 33.333 0.00 0.00 0.00 3.36
2005 2016 5.368989 GGATTCCGAGTGAAAGGATTGTAT 58.631 41.667 0.00 0.00 36.33 2.29
2008 2019 6.785337 TTCCGAGTGAAAGGATTGTATAGA 57.215 37.500 0.00 0.00 36.28 1.98
2082 2093 0.329596 CTCAAGGACAAGGGGGAAGG 59.670 60.000 0.00 0.00 0.00 3.46
2090 2101 1.153565 ACAAGGGGGAAGGGAGAGTAA 59.846 52.381 0.00 0.00 0.00 2.24
2415 2427 1.040339 ACTCAGGAGATGGAGCCGAC 61.040 60.000 2.79 0.00 34.48 4.79
2549 2561 3.184178 CCAAAATGAAAATCACGGTGTGC 59.816 43.478 8.17 0.00 32.98 4.57
2594 2606 1.464734 CGACAGTGAGAGGGCTTCTA 58.535 55.000 0.00 0.00 35.87 2.10
2660 2672 6.347696 TGAAACCAAGATGAACAGCAAAAAT 58.652 32.000 0.00 0.00 0.00 1.82
2777 2789 4.322567 GAGTGAGAGTTGAGCTCCAAAAT 58.677 43.478 12.15 0.00 45.21 1.82
2780 2792 5.240403 AGTGAGAGTTGAGCTCCAAAATTTC 59.760 40.000 12.15 4.66 45.21 2.17
2819 2832 7.373778 AGATGTGGTAATAAACGAAAAGGAC 57.626 36.000 0.00 0.00 0.00 3.85
2876 2889 5.010922 TGAACCTGCAAGTGATAAAAAGCAT 59.989 36.000 0.00 0.00 0.00 3.79
2954 2968 4.260170 GTGCTGGAGACTTCAATGAGATT 58.740 43.478 0.00 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.267620 TCATAAGGTCTTACATTGAGATCCAT 57.732 34.615 0.00 0.00 0.00 3.41
7 8 9.832445 GGAGTAATTCATAAGGTCTTACATTGA 57.168 33.333 0.00 0.00 0.00 2.57
8 9 9.057089 GGGAGTAATTCATAAGGTCTTACATTG 57.943 37.037 0.00 0.00 0.00 2.82
9 10 9.004231 AGGGAGTAATTCATAAGGTCTTACATT 57.996 33.333 0.00 0.00 0.00 2.71
10 11 8.568617 AGGGAGTAATTCATAAGGTCTTACAT 57.431 34.615 0.00 0.00 0.00 2.29
11 12 7.070821 GGAGGGAGTAATTCATAAGGTCTTACA 59.929 40.741 0.00 0.00 0.00 2.41
12 13 7.443477 GGAGGGAGTAATTCATAAGGTCTTAC 58.557 42.308 0.00 0.00 0.00 2.34
13 14 6.267014 CGGAGGGAGTAATTCATAAGGTCTTA 59.733 42.308 0.00 0.00 0.00 2.10
14 15 5.070580 CGGAGGGAGTAATTCATAAGGTCTT 59.929 44.000 0.00 0.00 0.00 3.01
15 16 4.589374 CGGAGGGAGTAATTCATAAGGTCT 59.411 45.833 0.00 0.00 0.00 3.85
16 17 4.344390 ACGGAGGGAGTAATTCATAAGGTC 59.656 45.833 0.00 0.00 0.00 3.85
17 18 4.296056 ACGGAGGGAGTAATTCATAAGGT 58.704 43.478 0.00 0.00 0.00 3.50
18 19 4.262506 GGACGGAGGGAGTAATTCATAAGG 60.263 50.000 0.00 0.00 0.00 2.69
19 20 4.262506 GGGACGGAGGGAGTAATTCATAAG 60.263 50.000 0.00 0.00 0.00 1.73
20 21 3.644738 GGGACGGAGGGAGTAATTCATAA 59.355 47.826 0.00 0.00 0.00 1.90
21 22 3.236896 GGGACGGAGGGAGTAATTCATA 58.763 50.000 0.00 0.00 0.00 2.15
22 23 2.047830 GGGACGGAGGGAGTAATTCAT 58.952 52.381 0.00 0.00 0.00 2.57
23 24 1.273381 TGGGACGGAGGGAGTAATTCA 60.273 52.381 0.00 0.00 0.00 2.57
24 25 1.492764 TGGGACGGAGGGAGTAATTC 58.507 55.000 0.00 0.00 0.00 2.17
25 26 2.191981 ATGGGACGGAGGGAGTAATT 57.808 50.000 0.00 0.00 0.00 1.40
26 27 3.339713 TTATGGGACGGAGGGAGTAAT 57.660 47.619 0.00 0.00 0.00 1.89
27 28 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
28 29 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
29 30 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
30 31 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
31 32 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
32 33 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
33 34 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
34 35 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
35 36 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
36 37 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
37 38 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
38 39 8.068380 GTCAAAAACGCTCTTATATTATGGGAC 58.932 37.037 0.00 0.00 0.00 4.46
39 40 7.771361 TGTCAAAAACGCTCTTATATTATGGGA 59.229 33.333 0.00 0.00 0.00 4.37
40 41 7.855904 GTGTCAAAAACGCTCTTATATTATGGG 59.144 37.037 0.00 0.00 35.42 4.00
41 42 8.612619 AGTGTCAAAAACGCTCTTATATTATGG 58.387 33.333 0.00 0.00 45.69 2.74
45 46 9.162764 ACATAGTGTCAAAAACGCTCTTATATT 57.837 29.630 0.00 0.00 45.69 1.28
46 47 8.718102 ACATAGTGTCAAAAACGCTCTTATAT 57.282 30.769 0.00 0.00 45.69 0.86
47 48 8.181487 GACATAGTGTCAAAAACGCTCTTATA 57.819 34.615 5.28 0.00 45.69 0.98
48 49 7.061752 GACATAGTGTCAAAAACGCTCTTAT 57.938 36.000 5.28 0.00 45.69 1.73
49 50 6.462073 GACATAGTGTCAAAAACGCTCTTA 57.538 37.500 5.28 0.00 45.69 2.10
50 51 5.344207 GACATAGTGTCAAAAACGCTCTT 57.656 39.130 5.28 0.00 45.69 2.85
51 52 4.992381 GACATAGTGTCAAAAACGCTCT 57.008 40.909 5.28 0.00 45.69 4.09
63 64 8.718102 ATATAAGAGCGTTTTTGACATAGTGT 57.282 30.769 0.00 0.00 0.00 3.55
64 65 9.638300 GAATATAAGAGCGTTTTTGACATAGTG 57.362 33.333 0.00 0.00 0.00 2.74
65 66 9.601217 AGAATATAAGAGCGTTTTTGACATAGT 57.399 29.630 0.00 0.00 0.00 2.12
66 67 9.855361 CAGAATATAAGAGCGTTTTTGACATAG 57.145 33.333 0.00 0.00 0.00 2.23
67 68 8.826710 CCAGAATATAAGAGCGTTTTTGACATA 58.173 33.333 0.00 0.00 0.00 2.29
68 69 7.201732 CCCAGAATATAAGAGCGTTTTTGACAT 60.202 37.037 0.00 0.00 0.00 3.06
69 70 6.093495 CCCAGAATATAAGAGCGTTTTTGACA 59.907 38.462 0.00 0.00 0.00 3.58
70 71 6.315393 TCCCAGAATATAAGAGCGTTTTTGAC 59.685 38.462 0.00 0.00 0.00 3.18
71 72 6.315393 GTCCCAGAATATAAGAGCGTTTTTGA 59.685 38.462 0.00 0.00 0.00 2.69
72 73 6.316390 AGTCCCAGAATATAAGAGCGTTTTTG 59.684 38.462 0.00 0.00 0.00 2.44
73 74 6.316390 CAGTCCCAGAATATAAGAGCGTTTTT 59.684 38.462 0.00 0.00 0.00 1.94
74 75 5.817816 CAGTCCCAGAATATAAGAGCGTTTT 59.182 40.000 0.00 0.00 0.00 2.43
75 76 5.128827 TCAGTCCCAGAATATAAGAGCGTTT 59.871 40.000 0.00 0.00 0.00 3.60
76 77 4.649674 TCAGTCCCAGAATATAAGAGCGTT 59.350 41.667 0.00 0.00 0.00 4.84
77 78 4.215908 TCAGTCCCAGAATATAAGAGCGT 58.784 43.478 0.00 0.00 0.00 5.07
78 79 4.321601 CCTCAGTCCCAGAATATAAGAGCG 60.322 50.000 0.00 0.00 0.00 5.03
79 80 4.020662 CCCTCAGTCCCAGAATATAAGAGC 60.021 50.000 0.00 0.00 0.00 4.09
80 81 5.398236 TCCCTCAGTCCCAGAATATAAGAG 58.602 45.833 0.00 0.00 0.00 2.85
81 82 5.103043 ACTCCCTCAGTCCCAGAATATAAGA 60.103 44.000 0.00 0.00 0.00 2.10
82 83 5.151454 ACTCCCTCAGTCCCAGAATATAAG 58.849 45.833 0.00 0.00 0.00 1.73
83 84 5.157770 ACTCCCTCAGTCCCAGAATATAA 57.842 43.478 0.00 0.00 0.00 0.98
84 85 4.834406 ACTCCCTCAGTCCCAGAATATA 57.166 45.455 0.00 0.00 0.00 0.86
85 86 3.715648 ACTCCCTCAGTCCCAGAATAT 57.284 47.619 0.00 0.00 0.00 1.28
86 87 3.532232 AGTACTCCCTCAGTCCCAGAATA 59.468 47.826 0.00 0.00 36.43 1.75
87 88 2.316372 AGTACTCCCTCAGTCCCAGAAT 59.684 50.000 0.00 0.00 36.43 2.40
88 89 1.717077 AGTACTCCCTCAGTCCCAGAA 59.283 52.381 0.00 0.00 36.43 3.02
89 90 1.383963 AGTACTCCCTCAGTCCCAGA 58.616 55.000 0.00 0.00 36.43 3.86
90 91 2.657143 GTAGTACTCCCTCAGTCCCAG 58.343 57.143 0.00 0.00 36.43 4.45
91 92 1.287146 GGTAGTACTCCCTCAGTCCCA 59.713 57.143 0.00 0.00 36.43 4.37
92 93 1.570024 AGGTAGTACTCCCTCAGTCCC 59.430 57.143 0.11 0.00 36.43 4.46
93 94 3.385314 AAGGTAGTACTCCCTCAGTCC 57.615 52.381 7.57 0.00 36.43 3.85
94 95 5.114764 ACTAAGGTAGTACTCCCTCAGTC 57.885 47.826 7.57 0.00 37.23 3.51
95 96 5.508567 GAACTAAGGTAGTACTCCCTCAGT 58.491 45.833 7.57 5.93 38.26 3.41
96 97 4.888823 GGAACTAAGGTAGTACTCCCTCAG 59.111 50.000 7.57 5.21 38.26 3.35
97 98 4.543337 AGGAACTAAGGTAGTACTCCCTCA 59.457 45.833 7.57 0.00 36.70 3.86
98 99 5.128033 AGGAACTAAGGTAGTACTCCCTC 57.872 47.826 7.57 0.00 36.70 4.30
137 138 9.961264 TCGTATGTAGTCCATATTAGAATCTCT 57.039 33.333 0.00 0.00 38.29 3.10
140 141 9.291664 GCTTCGTATGTAGTCCATATTAGAATC 57.708 37.037 0.00 0.00 38.29 2.52
141 142 8.803235 TGCTTCGTATGTAGTCCATATTAGAAT 58.197 33.333 0.00 0.00 38.29 2.40
142 143 8.173542 TGCTTCGTATGTAGTCCATATTAGAA 57.826 34.615 0.00 0.00 38.29 2.10
143 144 7.754851 TGCTTCGTATGTAGTCCATATTAGA 57.245 36.000 0.00 0.00 38.29 2.10
144 145 8.812147 TTTGCTTCGTATGTAGTCCATATTAG 57.188 34.615 0.00 0.00 38.29 1.73
145 146 9.772973 ATTTTGCTTCGTATGTAGTCCATATTA 57.227 29.630 0.00 0.00 38.29 0.98
146 147 8.559536 CATTTTGCTTCGTATGTAGTCCATATT 58.440 33.333 0.00 0.00 38.29 1.28
147 148 7.931407 TCATTTTGCTTCGTATGTAGTCCATAT 59.069 33.333 0.00 0.00 38.29 1.78
148 149 7.269316 TCATTTTGCTTCGTATGTAGTCCATA 58.731 34.615 0.00 0.00 34.86 2.74
149 150 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
150 151 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
151 152 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
152 153 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
153 154 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
154 155 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
155 156 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
156 157 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
157 158 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
158 159 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
159 160 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
160 161 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
161 162 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
162 163 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
205 206 6.994221 ACTCAATAGGGATTACATACGGAAG 58.006 40.000 0.00 0.00 0.00 3.46
206 207 6.989155 ACTCAATAGGGATTACATACGGAA 57.011 37.500 0.00 0.00 0.00 4.30
207 208 8.114102 AGATACTCAATAGGGATTACATACGGA 58.886 37.037 0.00 0.00 0.00 4.69
208 209 8.294954 AGATACTCAATAGGGATTACATACGG 57.705 38.462 0.00 0.00 0.00 4.02
219 220 9.892130 ACAAGTCTTTTTAGATACTCAATAGGG 57.108 33.333 0.00 0.00 0.00 3.53
236 237 9.847224 TCTTTCTGTTCCTAAATACAAGTCTTT 57.153 29.630 0.00 0.00 0.00 2.52
237 238 9.847224 TTCTTTCTGTTCCTAAATACAAGTCTT 57.153 29.630 0.00 0.00 0.00 3.01
254 255 9.961265 TCGTCGTAAATGATATATTCTTTCTGT 57.039 29.630 0.00 0.00 0.00 3.41
259 260 9.961265 TGTCTTCGTCGTAAATGATATATTCTT 57.039 29.630 0.00 0.00 0.00 2.52
265 266 9.908152 TGATTATGTCTTCGTCGTAAATGATAT 57.092 29.630 0.00 0.00 0.00 1.63
266 267 9.738832 TTGATTATGTCTTCGTCGTAAATGATA 57.261 29.630 0.00 0.00 0.00 2.15
267 268 8.642908 TTGATTATGTCTTCGTCGTAAATGAT 57.357 30.769 0.00 0.00 0.00 2.45
268 269 7.971722 TCTTGATTATGTCTTCGTCGTAAATGA 59.028 33.333 0.00 0.00 0.00 2.57
269 270 8.115491 TCTTGATTATGTCTTCGTCGTAAATG 57.885 34.615 0.00 0.00 0.00 2.32
270 271 8.873215 ATCTTGATTATGTCTTCGTCGTAAAT 57.127 30.769 0.00 0.00 0.00 1.40
271 272 8.697846 AATCTTGATTATGTCTTCGTCGTAAA 57.302 30.769 0.00 0.00 0.00 2.01
272 273 8.697846 AAATCTTGATTATGTCTTCGTCGTAA 57.302 30.769 0.00 0.00 0.00 3.18
273 274 9.447040 CTAAATCTTGATTATGTCTTCGTCGTA 57.553 33.333 0.00 0.00 0.00 3.43
274 275 7.435488 CCTAAATCTTGATTATGTCTTCGTCGT 59.565 37.037 0.00 0.00 0.00 4.34
275 276 7.096023 CCCTAAATCTTGATTATGTCTTCGTCG 60.096 40.741 0.00 0.00 0.00 5.12
276 277 7.307455 GCCCTAAATCTTGATTATGTCTTCGTC 60.307 40.741 0.00 0.00 0.00 4.20
277 278 6.483640 GCCCTAAATCTTGATTATGTCTTCGT 59.516 38.462 0.00 0.00 0.00 3.85
278 279 6.073003 GGCCCTAAATCTTGATTATGTCTTCG 60.073 42.308 0.00 0.00 0.00 3.79
279 280 7.001073 AGGCCCTAAATCTTGATTATGTCTTC 58.999 38.462 0.00 0.00 0.00 2.87
280 281 6.774656 CAGGCCCTAAATCTTGATTATGTCTT 59.225 38.462 0.00 0.00 0.00 3.01
281 282 6.126361 ACAGGCCCTAAATCTTGATTATGTCT 60.126 38.462 0.00 0.00 0.00 3.41
282 283 6.064717 ACAGGCCCTAAATCTTGATTATGTC 58.935 40.000 0.00 0.00 0.00 3.06
283 284 6.018433 ACAGGCCCTAAATCTTGATTATGT 57.982 37.500 0.00 0.00 0.00 2.29
284 285 6.966534 AACAGGCCCTAAATCTTGATTATG 57.033 37.500 0.00 0.00 0.00 1.90
285 286 7.125391 TCAAACAGGCCCTAAATCTTGATTAT 58.875 34.615 0.00 0.00 0.00 1.28
286 287 6.489603 TCAAACAGGCCCTAAATCTTGATTA 58.510 36.000 0.00 0.00 0.00 1.75
287 288 5.332743 TCAAACAGGCCCTAAATCTTGATT 58.667 37.500 0.00 0.00 0.00 2.57
288 289 4.934356 TCAAACAGGCCCTAAATCTTGAT 58.066 39.130 0.00 0.00 0.00 2.57
289 290 4.380843 TCAAACAGGCCCTAAATCTTGA 57.619 40.909 0.00 0.00 0.00 3.02
290 291 4.524328 ACTTCAAACAGGCCCTAAATCTTG 59.476 41.667 0.00 0.00 0.00 3.02
291 292 4.740902 ACTTCAAACAGGCCCTAAATCTT 58.259 39.130 0.00 0.00 0.00 2.40
292 293 4.336280 GACTTCAAACAGGCCCTAAATCT 58.664 43.478 0.00 0.00 0.00 2.40
293 294 3.444034 GGACTTCAAACAGGCCCTAAATC 59.556 47.826 0.00 0.00 35.60 2.17
294 295 3.431415 GGACTTCAAACAGGCCCTAAAT 58.569 45.455 0.00 0.00 35.60 1.40
295 296 2.871453 GGACTTCAAACAGGCCCTAAA 58.129 47.619 0.00 0.00 35.60 1.85
296 297 2.579410 GGACTTCAAACAGGCCCTAA 57.421 50.000 0.00 0.00 35.60 2.69
300 301 0.609406 GGAGGGACTTCAAACAGGCC 60.609 60.000 0.00 0.00 41.55 5.19
301 302 0.609406 GGGAGGGACTTCAAACAGGC 60.609 60.000 0.00 0.00 41.55 4.85
302 303 0.321653 CGGGAGGGACTTCAAACAGG 60.322 60.000 0.00 0.00 41.55 4.00
303 304 0.955919 GCGGGAGGGACTTCAAACAG 60.956 60.000 0.00 0.00 41.55 3.16
304 305 1.072505 GCGGGAGGGACTTCAAACA 59.927 57.895 0.00 0.00 41.55 2.83
305 306 1.072505 TGCGGGAGGGACTTCAAAC 59.927 57.895 0.00 0.00 41.55 2.93
306 307 1.072505 GTGCGGGAGGGACTTCAAA 59.927 57.895 0.00 0.00 41.55 2.69
307 308 2.747686 GTGCGGGAGGGACTTCAA 59.252 61.111 0.00 0.00 41.55 2.69
308 309 3.319198 GGTGCGGGAGGGACTTCA 61.319 66.667 0.00 0.00 41.55 3.02
309 310 4.452733 CGGTGCGGGAGGGACTTC 62.453 72.222 0.00 0.00 41.55 3.01
315 316 3.934391 GAAGTCACGGTGCGGGAGG 62.934 68.421 2.51 0.00 41.01 4.30
316 317 2.432628 GAAGTCACGGTGCGGGAG 60.433 66.667 2.51 0.00 41.01 4.30
317 318 4.351938 CGAAGTCACGGTGCGGGA 62.352 66.667 2.51 0.00 36.75 5.14
320 321 3.470567 GAGCGAAGTCACGGTGCG 61.471 66.667 2.51 2.32 43.81 5.34
321 322 1.664965 AAGAGCGAAGTCACGGTGC 60.665 57.895 2.51 0.00 43.81 5.01
322 323 1.284982 CCAAGAGCGAAGTCACGGTG 61.285 60.000 0.56 0.56 43.81 4.94
323 324 1.006102 CCAAGAGCGAAGTCACGGT 60.006 57.895 0.00 0.00 46.35 4.83
324 325 0.734253 CTCCAAGAGCGAAGTCACGG 60.734 60.000 0.00 0.00 0.00 4.94
325 326 1.347817 GCTCCAAGAGCGAAGTCACG 61.348 60.000 0.06 0.00 45.85 4.35
326 327 2.450619 GCTCCAAGAGCGAAGTCAC 58.549 57.895 0.06 0.00 45.85 3.67
327 328 4.996976 GCTCCAAGAGCGAAGTCA 57.003 55.556 0.06 0.00 45.85 3.41
335 336 1.449956 GCTCCAGCTGCTCCAAGAG 60.450 63.158 8.66 9.57 38.21 2.85
336 337 2.667418 GCTCCAGCTGCTCCAAGA 59.333 61.111 8.66 0.00 38.21 3.02
337 338 2.438075 GGCTCCAGCTGCTCCAAG 60.438 66.667 8.66 0.00 41.70 3.61
338 339 3.251509 TGGCTCCAGCTGCTCCAA 61.252 61.111 8.66 0.00 41.70 3.53
339 340 4.025858 GTGGCTCCAGCTGCTCCA 62.026 66.667 8.66 11.76 41.70 3.86
340 341 3.972971 CTGTGGCTCCAGCTGCTCC 62.973 68.421 8.66 9.12 41.70 4.70
341 342 2.436292 CTGTGGCTCCAGCTGCTC 60.436 66.667 8.66 0.00 41.70 4.26
342 343 2.349100 AAACTGTGGCTCCAGCTGCT 62.349 55.000 8.66 0.00 41.70 4.24
343 344 0.606401 TAAACTGTGGCTCCAGCTGC 60.606 55.000 8.66 0.00 41.70 5.25
344 345 1.896220 TTAAACTGTGGCTCCAGCTG 58.104 50.000 6.78 6.78 41.70 4.24
345 346 2.656947 TTTAAACTGTGGCTCCAGCT 57.343 45.000 0.00 0.00 41.70 4.24
346 347 3.942130 AATTTAAACTGTGGCTCCAGC 57.058 42.857 4.92 0.00 35.83 4.85
347 348 7.156876 TCATAAATTTAAACTGTGGCTCCAG 57.843 36.000 1.21 3.65 38.45 3.86
348 349 7.531857 TTCATAAATTTAAACTGTGGCTCCA 57.468 32.000 1.21 0.00 0.00 3.86
349 350 6.531594 GCTTCATAAATTTAAACTGTGGCTCC 59.468 38.462 1.21 0.00 0.00 4.70
350 351 6.251376 CGCTTCATAAATTTAAACTGTGGCTC 59.749 38.462 1.21 0.00 0.00 4.70
351 352 6.092748 CGCTTCATAAATTTAAACTGTGGCT 58.907 36.000 1.21 0.00 0.00 4.75
352 353 5.288472 CCGCTTCATAAATTTAAACTGTGGC 59.712 40.000 1.21 5.06 0.00 5.01
353 354 5.804979 CCCGCTTCATAAATTTAAACTGTGG 59.195 40.000 1.21 8.99 0.00 4.17
354 355 5.804979 CCCCGCTTCATAAATTTAAACTGTG 59.195 40.000 1.21 0.00 0.00 3.66
355 356 5.712917 TCCCCGCTTCATAAATTTAAACTGT 59.287 36.000 1.21 0.00 0.00 3.55
356 357 6.202516 TCCCCGCTTCATAAATTTAAACTG 57.797 37.500 1.21 0.00 0.00 3.16
357 358 6.844097 TTCCCCGCTTCATAAATTTAAACT 57.156 33.333 1.21 0.00 0.00 2.66
358 359 6.869388 TGTTTCCCCGCTTCATAAATTTAAAC 59.131 34.615 1.21 0.58 0.00 2.01
359 360 6.994221 TGTTTCCCCGCTTCATAAATTTAAA 58.006 32.000 1.21 0.00 0.00 1.52
360 361 6.350612 CCTGTTTCCCCGCTTCATAAATTTAA 60.351 38.462 1.21 0.00 0.00 1.52
361 362 5.126384 CCTGTTTCCCCGCTTCATAAATTTA 59.874 40.000 0.00 0.00 0.00 1.40
362 363 4.081697 CCTGTTTCCCCGCTTCATAAATTT 60.082 41.667 0.00 0.00 0.00 1.82
363 364 3.447229 CCTGTTTCCCCGCTTCATAAATT 59.553 43.478 0.00 0.00 0.00 1.82
364 365 3.023832 CCTGTTTCCCCGCTTCATAAAT 58.976 45.455 0.00 0.00 0.00 1.40
365 366 2.224917 ACCTGTTTCCCCGCTTCATAAA 60.225 45.455 0.00 0.00 0.00 1.40
366 367 1.353022 ACCTGTTTCCCCGCTTCATAA 59.647 47.619 0.00 0.00 0.00 1.90
367 368 0.988832 ACCTGTTTCCCCGCTTCATA 59.011 50.000 0.00 0.00 0.00 2.15
368 369 0.988832 TACCTGTTTCCCCGCTTCAT 59.011 50.000 0.00 0.00 0.00 2.57
369 370 0.035739 GTACCTGTTTCCCCGCTTCA 59.964 55.000 0.00 0.00 0.00 3.02
370 371 0.323957 AGTACCTGTTTCCCCGCTTC 59.676 55.000 0.00 0.00 0.00 3.86
371 372 0.323957 GAGTACCTGTTTCCCCGCTT 59.676 55.000 0.00 0.00 0.00 4.68
372 373 1.551019 GGAGTACCTGTTTCCCCGCT 61.551 60.000 0.00 0.00 0.00 5.52
373 374 1.078637 GGAGTACCTGTTTCCCCGC 60.079 63.158 0.00 0.00 0.00 6.13
374 375 1.217244 CGGAGTACCTGTTTCCCCG 59.783 63.158 0.00 0.00 0.00 5.73
375 376 1.078637 GCGGAGTACCTGTTTCCCC 60.079 63.158 0.00 0.00 0.00 4.81
376 377 0.252197 ATGCGGAGTACCTGTTTCCC 59.748 55.000 0.00 0.00 0.00 3.97
377 378 2.973694 TATGCGGAGTACCTGTTTCC 57.026 50.000 0.00 0.00 0.00 3.13
378 379 4.323553 AGATATGCGGAGTACCTGTTTC 57.676 45.455 0.00 0.00 0.00 2.78
379 380 4.755266 AAGATATGCGGAGTACCTGTTT 57.245 40.909 0.00 0.00 0.00 2.83
380 381 4.442706 CAAAGATATGCGGAGTACCTGTT 58.557 43.478 0.00 0.00 0.00 3.16
381 382 3.181465 CCAAAGATATGCGGAGTACCTGT 60.181 47.826 0.00 0.00 0.00 4.00
382 383 3.069586 TCCAAAGATATGCGGAGTACCTG 59.930 47.826 0.00 0.00 0.00 4.00
383 384 3.305720 TCCAAAGATATGCGGAGTACCT 58.694 45.455 0.00 0.00 0.00 3.08
384 385 3.746045 TCCAAAGATATGCGGAGTACC 57.254 47.619 0.00 0.00 0.00 3.34
385 386 5.049405 CCAAATCCAAAGATATGCGGAGTAC 60.049 44.000 0.00 0.00 30.42 2.73
386 387 5.063204 CCAAATCCAAAGATATGCGGAGTA 58.937 41.667 0.00 0.00 30.42 2.59
387 388 3.885297 CCAAATCCAAAGATATGCGGAGT 59.115 43.478 0.00 0.00 30.42 3.85
388 389 3.304928 GCCAAATCCAAAGATATGCGGAG 60.305 47.826 0.00 0.00 30.42 4.63
389 390 2.622942 GCCAAATCCAAAGATATGCGGA 59.377 45.455 0.00 0.00 30.42 5.54
390 391 2.605338 CGCCAAATCCAAAGATATGCGG 60.605 50.000 0.00 0.00 38.85 5.69
391 392 2.605338 CCGCCAAATCCAAAGATATGCG 60.605 50.000 0.00 0.00 40.60 4.73
392 393 2.622942 TCCGCCAAATCCAAAGATATGC 59.377 45.455 0.00 0.00 30.42 3.14
393 394 3.304928 GCTCCGCCAAATCCAAAGATATG 60.305 47.826 0.00 0.00 30.42 1.78
394 395 2.887152 GCTCCGCCAAATCCAAAGATAT 59.113 45.455 0.00 0.00 30.42 1.63
395 396 2.297701 GCTCCGCCAAATCCAAAGATA 58.702 47.619 0.00 0.00 30.42 1.98
396 397 1.106285 GCTCCGCCAAATCCAAAGAT 58.894 50.000 0.00 0.00 0.00 2.40
397 398 2.566824 GCTCCGCCAAATCCAAAGA 58.433 52.632 0.00 0.00 0.00 2.52
421 422 0.606604 TGAGGAGCTGTTCGGGTAAC 59.393 55.000 0.00 0.00 38.67 2.50
422 423 1.275291 CTTGAGGAGCTGTTCGGGTAA 59.725 52.381 0.00 0.00 0.00 2.85
423 424 0.895530 CTTGAGGAGCTGTTCGGGTA 59.104 55.000 0.00 0.00 0.00 3.69
424 425 1.122019 ACTTGAGGAGCTGTTCGGGT 61.122 55.000 0.00 0.00 0.00 5.28
425 426 0.671781 CACTTGAGGAGCTGTTCGGG 60.672 60.000 0.00 0.00 0.00 5.14
426 427 0.034059 ACACTTGAGGAGCTGTTCGG 59.966 55.000 0.00 0.00 0.00 4.30
427 428 1.143305 CACACTTGAGGAGCTGTTCG 58.857 55.000 0.00 0.00 0.00 3.95
428 429 2.533266 TCACACTTGAGGAGCTGTTC 57.467 50.000 0.00 0.00 0.00 3.18
429 430 3.498774 AATCACACTTGAGGAGCTGTT 57.501 42.857 0.00 0.00 34.35 3.16
430 431 3.834813 TCTAATCACACTTGAGGAGCTGT 59.165 43.478 0.00 0.00 34.35 4.40
431 432 4.462508 TCTAATCACACTTGAGGAGCTG 57.537 45.455 0.00 0.00 34.35 4.24
432 433 5.489792 TTTCTAATCACACTTGAGGAGCT 57.510 39.130 0.00 0.00 34.35 4.09
433 434 6.348868 CCTTTTTCTAATCACACTTGAGGAGC 60.349 42.308 0.00 0.00 34.35 4.70
434 435 6.150140 CCCTTTTTCTAATCACACTTGAGGAG 59.850 42.308 0.00 0.00 34.35 3.69
435 436 6.003950 CCCTTTTTCTAATCACACTTGAGGA 58.996 40.000 0.00 0.00 34.35 3.71
436 437 6.003950 TCCCTTTTTCTAATCACACTTGAGG 58.996 40.000 0.00 0.00 34.35 3.86
437 438 7.693969 ATCCCTTTTTCTAATCACACTTGAG 57.306 36.000 0.00 0.00 34.35 3.02
438 439 7.523709 GCAATCCCTTTTTCTAATCACACTTGA 60.524 37.037 0.00 0.00 35.73 3.02
439 440 6.587608 GCAATCCCTTTTTCTAATCACACTTG 59.412 38.462 0.00 0.00 0.00 3.16
440 441 6.494835 AGCAATCCCTTTTTCTAATCACACTT 59.505 34.615 0.00 0.00 0.00 3.16
441 442 6.012745 AGCAATCCCTTTTTCTAATCACACT 58.987 36.000 0.00 0.00 0.00 3.55
442 443 6.272822 AGCAATCCCTTTTTCTAATCACAC 57.727 37.500 0.00 0.00 0.00 3.82
443 444 6.916360 AAGCAATCCCTTTTTCTAATCACA 57.084 33.333 0.00 0.00 0.00 3.58
444 445 6.967199 CGTAAGCAATCCCTTTTTCTAATCAC 59.033 38.462 0.00 0.00 0.00 3.06
445 446 6.094881 CCGTAAGCAATCCCTTTTTCTAATCA 59.905 38.462 0.00 0.00 0.00 2.57
446 447 6.095021 ACCGTAAGCAATCCCTTTTTCTAATC 59.905 38.462 0.00 0.00 0.00 1.75
447 448 5.949952 ACCGTAAGCAATCCCTTTTTCTAAT 59.050 36.000 0.00 0.00 0.00 1.73
448 449 5.318630 ACCGTAAGCAATCCCTTTTTCTAA 58.681 37.500 0.00 0.00 0.00 2.10
449 450 4.913784 ACCGTAAGCAATCCCTTTTTCTA 58.086 39.130 0.00 0.00 0.00 2.10
450 451 3.763057 ACCGTAAGCAATCCCTTTTTCT 58.237 40.909 0.00 0.00 0.00 2.52
451 452 4.022676 TGAACCGTAAGCAATCCCTTTTTC 60.023 41.667 0.00 0.00 0.00 2.29
452 453 3.892588 TGAACCGTAAGCAATCCCTTTTT 59.107 39.130 0.00 0.00 0.00 1.94
453 454 3.254903 GTGAACCGTAAGCAATCCCTTTT 59.745 43.478 0.00 0.00 0.00 2.27
454 455 2.817844 GTGAACCGTAAGCAATCCCTTT 59.182 45.455 0.00 0.00 0.00 3.11
455 456 2.039879 AGTGAACCGTAAGCAATCCCTT 59.960 45.455 0.00 0.00 0.00 3.95
456 457 1.628846 AGTGAACCGTAAGCAATCCCT 59.371 47.619 0.00 0.00 0.00 4.20
457 458 2.007608 GAGTGAACCGTAAGCAATCCC 58.992 52.381 0.00 0.00 0.00 3.85
458 459 1.659098 CGAGTGAACCGTAAGCAATCC 59.341 52.381 0.00 0.00 0.00 3.01
459 460 2.334838 ACGAGTGAACCGTAAGCAATC 58.665 47.619 0.00 0.00 38.61 2.67
460 461 2.450609 ACGAGTGAACCGTAAGCAAT 57.549 45.000 0.00 0.00 38.61 3.56
461 462 2.129607 GAACGAGTGAACCGTAAGCAA 58.870 47.619 0.00 0.00 39.57 3.91
462 463 1.338973 AGAACGAGTGAACCGTAAGCA 59.661 47.619 0.00 0.00 39.57 3.91
463 464 2.061740 AGAACGAGTGAACCGTAAGC 57.938 50.000 0.00 0.00 39.57 3.09
464 465 3.427863 GGAAAGAACGAGTGAACCGTAAG 59.572 47.826 0.00 0.00 39.57 2.34
465 466 3.383761 GGAAAGAACGAGTGAACCGTAA 58.616 45.455 0.00 0.00 39.57 3.18
466 467 2.605338 CGGAAAGAACGAGTGAACCGTA 60.605 50.000 0.00 0.00 39.57 4.02
467 468 1.861971 GGAAAGAACGAGTGAACCGT 58.138 50.000 0.00 0.00 42.61 4.83
468 469 0.782384 CGGAAAGAACGAGTGAACCG 59.218 55.000 0.00 0.00 0.00 4.44
469 470 1.791204 GACGGAAAGAACGAGTGAACC 59.209 52.381 0.00 0.00 34.93 3.62
470 471 1.791204 GGACGGAAAGAACGAGTGAAC 59.209 52.381 0.00 0.00 34.93 3.18
471 472 1.269936 GGGACGGAAAGAACGAGTGAA 60.270 52.381 0.00 0.00 34.93 3.18
472 473 0.316204 GGGACGGAAAGAACGAGTGA 59.684 55.000 0.00 0.00 34.93 3.41
473 474 0.317479 AGGGACGGAAAGAACGAGTG 59.683 55.000 0.00 0.00 34.93 3.51
474 475 1.000618 GAAGGGACGGAAAGAACGAGT 59.999 52.381 0.00 0.00 34.93 4.18
475 476 1.672145 GGAAGGGACGGAAAGAACGAG 60.672 57.143 0.00 0.00 34.93 4.18
476 477 0.319405 GGAAGGGACGGAAAGAACGA 59.681 55.000 0.00 0.00 34.93 3.85
477 478 0.320697 AGGAAGGGACGGAAAGAACG 59.679 55.000 0.00 0.00 37.36 3.95
478 479 1.346722 TCAGGAAGGGACGGAAAGAAC 59.653 52.381 0.00 0.00 0.00 3.01
479 480 1.346722 GTCAGGAAGGGACGGAAAGAA 59.653 52.381 0.00 0.00 0.00 2.52
522 523 2.358737 CAAGCCGGAGTTCGCCTT 60.359 61.111 5.05 0.00 36.98 4.35
549 550 4.556592 ATTTGGTGGGATTTGGTGATTG 57.443 40.909 0.00 0.00 0.00 2.67
567 568 4.340617 TGGGTTAGAAAGCGATGGAATTT 58.659 39.130 0.00 0.00 0.00 1.82
570 571 3.426787 TTGGGTTAGAAAGCGATGGAA 57.573 42.857 0.00 0.00 0.00 3.53
574 575 3.963129 TGGAATTGGGTTAGAAAGCGAT 58.037 40.909 0.00 0.00 0.00 4.58
584 585 2.896685 TGAAAAGCGATGGAATTGGGTT 59.103 40.909 0.00 0.00 0.00 4.11
603 604 2.034053 GGGCGATGTTGAAAGTTGTTGA 59.966 45.455 0.00 0.00 0.00 3.18
697 700 0.318441 TGGCAGAAACGGAGAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
699 702 1.009389 CGTGGCAGAAACGGAGAGAC 61.009 60.000 0.00 0.00 37.39 3.36
703 706 0.600255 AGTTCGTGGCAGAAACGGAG 60.600 55.000 6.34 0.00 41.34 4.63
723 726 3.193782 AGAGTATTTCCCCTTCTGCCTT 58.806 45.455 0.00 0.00 0.00 4.35
728 731 4.354208 TCCAGAGAGTATTTCCCCTTCT 57.646 45.455 0.00 0.00 0.00 2.85
729 732 4.904853 AGATCCAGAGAGTATTTCCCCTTC 59.095 45.833 0.00 0.00 0.00 3.46
741 744 3.556004 GGGCGGATTAAAGATCCAGAGAG 60.556 52.174 5.94 0.00 38.08 3.20
795 798 5.029807 TGGTTGGATTGGAAAGGAAAAAC 57.970 39.130 0.00 0.00 0.00 2.43
815 818 7.147724 TGGTTTCAGTAGTAGATGGAAGTATGG 60.148 40.741 0.00 0.00 0.00 2.74
818 821 7.179966 TCTGGTTTCAGTAGTAGATGGAAGTA 58.820 38.462 0.00 0.00 41.59 2.24
827 832 4.021016 AGCCAACTCTGGTTTCAGTAGTAG 60.021 45.833 0.00 0.00 45.53 2.57
828 833 3.901844 AGCCAACTCTGGTTTCAGTAGTA 59.098 43.478 0.00 0.00 45.53 1.82
829 834 2.706190 AGCCAACTCTGGTTTCAGTAGT 59.294 45.455 0.00 0.00 45.53 2.73
867 872 1.033746 CCGCCAACTACCTCCTCGTA 61.034 60.000 0.00 0.00 0.00 3.43
1057 1064 0.463620 GGCTTCTCTGACCCTGCTAG 59.536 60.000 0.00 0.00 0.00 3.42
1231 1238 3.125316 GGTCTGTCATTCAACGCCTTAAG 59.875 47.826 0.00 0.00 0.00 1.85
1235 1242 0.687354 AGGTCTGTCATTCAACGCCT 59.313 50.000 0.00 0.00 0.00 5.52
1273 1280 7.147759 TGGATCAAAATCTTCAACAACCAGAAA 60.148 33.333 0.00 0.00 32.12 2.52
1281 1288 5.787953 TTGCTGGATCAAAATCTTCAACA 57.212 34.783 0.00 0.00 32.12 3.33
1288 1295 3.989817 AGCGTTTTTGCTGGATCAAAATC 59.010 39.130 0.00 2.40 45.28 2.17
1308 1315 4.486090 TCTTGAACTCGTACTCATTGAGC 58.514 43.478 13.64 0.00 32.04 4.26
1425 1436 5.530171 GCCACATTCATCTACATCAACATCT 59.470 40.000 0.00 0.00 0.00 2.90
1590 1601 9.244292 GTAAATAAAATCTCTTTCCCCTTCTGT 57.756 33.333 0.00 0.00 0.00 3.41
1632 1643 2.224314 GCCGCAAATATAGCAGAAGTCC 59.776 50.000 1.62 0.00 0.00 3.85
1642 1653 1.424403 CCGATGACGCCGCAAATATA 58.576 50.000 0.00 0.00 38.29 0.86
1643 1654 1.841663 GCCGATGACGCCGCAAATAT 61.842 55.000 0.00 0.00 38.29 1.28
1752 1763 1.691434 CTCCTATCCTCCTCACTTGGC 59.309 57.143 0.00 0.00 0.00 4.52
1823 1834 0.255890 AATTGCATCGCTACCCCTGT 59.744 50.000 0.00 0.00 0.00 4.00
1862 1873 0.698238 CCCCACTCCTTCACCATCAA 59.302 55.000 0.00 0.00 0.00 2.57
1942 1953 5.659079 TCTTTCCTCCAGATTCTACCTCTTC 59.341 44.000 0.00 0.00 0.00 2.87
1944 1955 5.213868 TCTTTCCTCCAGATTCTACCTCT 57.786 43.478 0.00 0.00 0.00 3.69
2005 2016 5.365895 GGGCTTCACTATTCCTTACCTTCTA 59.634 44.000 0.00 0.00 0.00 2.10
2008 2019 3.202373 GGGGCTTCACTATTCCTTACCTT 59.798 47.826 0.00 0.00 0.00 3.50
2082 2093 3.491792 CGCTGGAATCTCCTTTACTCTCC 60.492 52.174 0.00 0.00 37.46 3.71
2090 2101 0.325671 TCCTCCGCTGGAATCTCCTT 60.326 55.000 0.00 0.00 37.46 3.36
2415 2427 5.469373 TCTCTGCATTATTAACACTTGCG 57.531 39.130 0.00 0.00 36.11 4.85
2549 2561 2.672996 CCCAACCTCCGGCAGTTG 60.673 66.667 22.55 22.55 42.41 3.16
2577 2589 2.452505 GTCTAGAAGCCCTCTCACTGT 58.547 52.381 0.00 0.00 35.41 3.55
2777 2789 6.464892 CCACATCTATATGGAGCCTTGAGAAA 60.465 42.308 0.00 0.00 38.34 2.52
2780 2792 4.285517 ACCACATCTATATGGAGCCTTGAG 59.714 45.833 0.00 0.00 39.46 3.02
2819 2832 0.312416 TGAACCGCCATTTGAAACCG 59.688 50.000 0.00 0.00 0.00 4.44
2876 2889 6.243216 ACACTTAAAAGTCTCCAGGTTGTA 57.757 37.500 0.00 0.00 37.08 2.41
2954 2968 7.252612 TCCTCTCTTTTCATGGTTGTACATA 57.747 36.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.