Multiple sequence alignment - TraesCS1D01G234800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G234800 chr1D 100.000 3557 0 0 1 3557 323946064 323942508 0.000000e+00 6569.0
1 TraesCS1D01G234800 chr1D 96.822 409 12 1 1 408 453099518 453099926 0.000000e+00 682.0
2 TraesCS1D01G234800 chr1B 95.704 3026 75 8 568 3557 436299497 436296491 0.000000e+00 4817.0
3 TraesCS1D01G234800 chr1B 86.777 121 5 4 463 582 436299625 436299515 1.340000e-24 124.0
4 TraesCS1D01G234800 chr1A 98.497 2196 33 0 561 2756 423922926 423920731 0.000000e+00 3873.0
5 TraesCS1D01G234800 chr1A 95.048 828 18 5 2752 3557 423918130 423917304 0.000000e+00 1280.0
6 TraesCS1D01G234800 chr1A 97.778 45 0 1 508 551 423923050 423923006 3.810000e-10 76.8
7 TraesCS1D01G234800 chr5D 90.099 404 28 2 1 404 53921069 53921460 6.810000e-142 514.0
8 TraesCS1D01G234800 chr5A 91.594 345 27 2 1 344 523564707 523564364 3.210000e-130 475.0
9 TraesCS1D01G234800 chr7A 96.094 256 9 1 150 404 602017426 602017681 1.980000e-112 416.0
10 TraesCS1D01G234800 chr6B 86.250 240 14 6 170 408 82753632 82753853 3.550000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G234800 chr1D 323942508 323946064 3556 True 6569.000000 6569 100.000000 1 3557 1 chr1D.!!$R1 3556
1 TraesCS1D01G234800 chr1B 436296491 436299625 3134 True 2470.500000 4817 91.240500 463 3557 2 chr1B.!!$R1 3094
2 TraesCS1D01G234800 chr1A 423917304 423923050 5746 True 1743.266667 3873 97.107667 508 3557 3 chr1A.!!$R1 3049

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
372 373 0.107897 TGGCGATATGTCCAGCGTTT 60.108 50.0 0.00 0.0 0.0 3.60 F
551 553 0.111061 TCAATCAGCTGGCACCAAGT 59.889 50.0 15.13 0.0 0.0 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2358 2463 2.576832 GCCCAATGCAACAGCCAGT 61.577 57.895 0.00 0.0 40.77 4.00 R
2582 2687 4.696402 ACGTTCTACACCAAGTTGTTGAAA 59.304 37.500 7.48 0.0 41.04 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.521947 GCAGGTAACCTCGAGTATGTT 57.478 47.619 12.31 10.90 37.17 2.71
21 22 3.858247 GCAGGTAACCTCGAGTATGTTT 58.142 45.455 12.31 0.00 37.17 2.83
22 23 3.864003 GCAGGTAACCTCGAGTATGTTTC 59.136 47.826 12.31 6.42 37.17 2.78
23 24 4.619863 GCAGGTAACCTCGAGTATGTTTCA 60.620 45.833 12.31 0.00 37.17 2.69
24 25 5.103000 CAGGTAACCTCGAGTATGTTTCAG 58.897 45.833 12.31 0.00 37.17 3.02
25 26 5.014858 AGGTAACCTCGAGTATGTTTCAGA 58.985 41.667 12.31 0.00 37.17 3.27
26 27 5.479375 AGGTAACCTCGAGTATGTTTCAGAA 59.521 40.000 12.31 0.00 37.17 3.02
27 28 5.575995 GGTAACCTCGAGTATGTTTCAGAAC 59.424 44.000 12.31 3.50 36.29 3.01
28 29 4.189639 ACCTCGAGTATGTTTCAGAACC 57.810 45.455 12.31 0.00 34.80 3.62
29 30 3.576982 ACCTCGAGTATGTTTCAGAACCA 59.423 43.478 12.31 0.00 34.80 3.67
30 31 4.223032 ACCTCGAGTATGTTTCAGAACCAT 59.777 41.667 12.31 0.00 34.80 3.55
31 32 5.178797 CCTCGAGTATGTTTCAGAACCATT 58.821 41.667 12.31 0.00 34.80 3.16
32 33 6.070995 ACCTCGAGTATGTTTCAGAACCATTA 60.071 38.462 12.31 0.00 34.80 1.90
33 34 6.255887 CCTCGAGTATGTTTCAGAACCATTAC 59.744 42.308 12.31 0.00 34.80 1.89
34 35 6.693466 TCGAGTATGTTTCAGAACCATTACA 58.307 36.000 0.00 0.00 34.80 2.41
35 36 7.327975 TCGAGTATGTTTCAGAACCATTACAT 58.672 34.615 0.00 1.02 34.80 2.29
36 37 7.277760 TCGAGTATGTTTCAGAACCATTACATG 59.722 37.037 0.00 0.00 34.80 3.21
37 38 7.088589 AGTATGTTTCAGAACCATTACATGC 57.911 36.000 0.00 2.25 34.80 4.06
38 39 6.886459 AGTATGTTTCAGAACCATTACATGCT 59.114 34.615 8.81 8.81 35.22 3.79
39 40 5.375417 TGTTTCAGAACCATTACATGCTG 57.625 39.130 0.00 0.00 34.80 4.41
40 41 5.069318 TGTTTCAGAACCATTACATGCTGA 58.931 37.500 0.00 0.00 34.80 4.26
41 42 5.534278 TGTTTCAGAACCATTACATGCTGAA 59.466 36.000 0.00 0.00 39.70 3.02
42 43 5.627499 TTCAGAACCATTACATGCTGAAC 57.373 39.130 0.00 0.00 37.43 3.18
43 44 4.910195 TCAGAACCATTACATGCTGAACT 58.090 39.130 0.00 0.00 30.26 3.01
44 45 4.937620 TCAGAACCATTACATGCTGAACTC 59.062 41.667 0.00 0.00 30.26 3.01
45 46 4.940046 CAGAACCATTACATGCTGAACTCT 59.060 41.667 0.00 0.00 0.00 3.24
46 47 5.413833 CAGAACCATTACATGCTGAACTCTT 59.586 40.000 0.00 0.00 0.00 2.85
47 48 6.595326 CAGAACCATTACATGCTGAACTCTTA 59.405 38.462 0.00 0.00 0.00 2.10
48 49 6.820656 AGAACCATTACATGCTGAACTCTTAG 59.179 38.462 0.00 0.00 0.00 2.18
49 50 4.878397 ACCATTACATGCTGAACTCTTAGC 59.122 41.667 0.00 0.00 40.29 3.09
50 51 5.121811 CCATTACATGCTGAACTCTTAGCT 58.878 41.667 0.00 0.00 40.52 3.32
51 52 5.587844 CCATTACATGCTGAACTCTTAGCTT 59.412 40.000 0.00 0.00 40.52 3.74
52 53 6.094603 CCATTACATGCTGAACTCTTAGCTTT 59.905 38.462 0.00 0.00 40.52 3.51
53 54 7.362401 CCATTACATGCTGAACTCTTAGCTTTT 60.362 37.037 0.00 0.00 40.52 2.27
54 55 5.619625 ACATGCTGAACTCTTAGCTTTTC 57.380 39.130 0.00 0.00 40.52 2.29
55 56 5.065914 ACATGCTGAACTCTTAGCTTTTCA 58.934 37.500 0.00 0.00 40.52 2.69
56 57 5.532406 ACATGCTGAACTCTTAGCTTTTCAA 59.468 36.000 0.00 0.00 40.52 2.69
57 58 5.424121 TGCTGAACTCTTAGCTTTTCAAC 57.576 39.130 0.00 0.00 40.52 3.18
58 59 4.881273 TGCTGAACTCTTAGCTTTTCAACA 59.119 37.500 0.00 0.00 40.52 3.33
59 60 5.356751 TGCTGAACTCTTAGCTTTTCAACAA 59.643 36.000 0.00 0.00 40.52 2.83
60 61 5.911838 GCTGAACTCTTAGCTTTTCAACAAG 59.088 40.000 0.00 0.00 36.99 3.16
67 68 1.925229 GCTTTTCAACAAGCTGTGCA 58.075 45.000 0.00 0.00 45.03 4.57
68 69 2.476821 GCTTTTCAACAAGCTGTGCAT 58.523 42.857 0.00 0.00 45.03 3.96
69 70 2.220133 GCTTTTCAACAAGCTGTGCATG 59.780 45.455 0.00 0.00 45.03 4.06
70 71 1.855513 TTTCAACAAGCTGTGCATGC 58.144 45.000 11.82 11.82 29.81 4.06
71 72 1.034356 TTCAACAAGCTGTGCATGCT 58.966 45.000 20.33 10.76 43.32 3.79
72 73 0.312729 TCAACAAGCTGTGCATGCTG 59.687 50.000 20.33 10.06 41.03 4.41
73 74 1.006571 AACAAGCTGTGCATGCTGC 60.007 52.632 20.33 19.13 45.29 5.25
74 75 1.461091 AACAAGCTGTGCATGCTGCT 61.461 50.000 20.33 20.97 45.31 4.24
75 76 0.607217 ACAAGCTGTGCATGCTGCTA 60.607 50.000 25.08 2.84 45.31 3.49
76 77 0.738975 CAAGCTGTGCATGCTGCTAT 59.261 50.000 25.08 16.11 45.31 2.97
77 78 1.134367 CAAGCTGTGCATGCTGCTATT 59.866 47.619 25.08 13.56 45.31 1.73
78 79 1.022735 AGCTGTGCATGCTGCTATTC 58.977 50.000 24.13 7.43 45.31 1.75
79 80 0.736636 GCTGTGCATGCTGCTATTCA 59.263 50.000 20.33 5.89 45.31 2.57
80 81 1.133598 GCTGTGCATGCTGCTATTCAA 59.866 47.619 20.33 0.00 45.31 2.69
81 82 2.416296 GCTGTGCATGCTGCTATTCAAA 60.416 45.455 20.33 0.00 45.31 2.69
82 83 3.737047 GCTGTGCATGCTGCTATTCAAAT 60.737 43.478 20.33 0.00 45.31 2.32
83 84 3.776340 TGTGCATGCTGCTATTCAAATG 58.224 40.909 20.33 0.00 45.31 2.32
84 85 3.120792 GTGCATGCTGCTATTCAAATGG 58.879 45.455 20.33 0.00 45.31 3.16
85 86 2.101750 TGCATGCTGCTATTCAAATGGG 59.898 45.455 20.33 0.00 45.31 4.00
86 87 2.750948 CATGCTGCTATTCAAATGGGC 58.249 47.619 0.00 0.00 0.00 5.36
87 88 2.148446 TGCTGCTATTCAAATGGGCT 57.852 45.000 0.00 0.00 0.00 5.19
88 89 1.752498 TGCTGCTATTCAAATGGGCTG 59.248 47.619 0.00 0.00 0.00 4.85
89 90 1.537562 GCTGCTATTCAAATGGGCTGC 60.538 52.381 13.65 13.65 36.83 5.25
90 91 1.068127 CTGCTATTCAAATGGGCTGCC 59.932 52.381 11.05 11.05 0.00 4.85
91 92 1.113788 GCTATTCAAATGGGCTGCCA 58.886 50.000 22.05 7.16 0.00 4.92
92 93 1.481772 GCTATTCAAATGGGCTGCCAA 59.518 47.619 22.05 10.36 0.00 4.52
93 94 2.093553 GCTATTCAAATGGGCTGCCAAA 60.094 45.455 22.05 8.51 0.00 3.28
94 95 3.619487 GCTATTCAAATGGGCTGCCAAAA 60.619 43.478 22.05 5.66 0.00 2.44
95 96 3.505480 ATTCAAATGGGCTGCCAAAAA 57.495 38.095 22.05 5.87 0.00 1.94
96 97 2.547299 TCAAATGGGCTGCCAAAAAG 57.453 45.000 22.05 7.16 0.00 2.27
97 98 1.767681 TCAAATGGGCTGCCAAAAAGT 59.232 42.857 22.05 0.00 0.00 2.66
98 99 1.874872 CAAATGGGCTGCCAAAAAGTG 59.125 47.619 22.05 6.48 0.00 3.16
99 100 1.422531 AATGGGCTGCCAAAAAGTGA 58.577 45.000 22.05 0.00 0.00 3.41
100 101 1.648116 ATGGGCTGCCAAAAAGTGAT 58.352 45.000 22.05 0.00 0.00 3.06
101 102 0.680618 TGGGCTGCCAAAAAGTGATG 59.319 50.000 22.05 0.00 0.00 3.07
102 103 0.681175 GGGCTGCCAAAAAGTGATGT 59.319 50.000 22.05 0.00 0.00 3.06
103 104 1.070601 GGGCTGCCAAAAAGTGATGTT 59.929 47.619 22.05 0.00 0.00 2.71
104 105 2.485302 GGGCTGCCAAAAAGTGATGTTT 60.485 45.455 22.05 0.00 0.00 2.83
105 106 2.545106 GGCTGCCAAAAAGTGATGTTTG 59.455 45.455 15.17 0.00 35.03 2.93
106 107 3.456280 GCTGCCAAAAAGTGATGTTTGA 58.544 40.909 0.00 0.00 36.96 2.69
107 108 3.870419 GCTGCCAAAAAGTGATGTTTGAA 59.130 39.130 0.00 0.00 36.96 2.69
108 109 4.332268 GCTGCCAAAAAGTGATGTTTGAAA 59.668 37.500 0.00 0.00 36.96 2.69
109 110 5.007921 GCTGCCAAAAAGTGATGTTTGAAAT 59.992 36.000 0.00 0.00 36.96 2.17
110 111 6.202570 GCTGCCAAAAAGTGATGTTTGAAATA 59.797 34.615 0.00 0.00 36.96 1.40
111 112 7.569957 GCTGCCAAAAAGTGATGTTTGAAATAG 60.570 37.037 0.00 0.00 36.96 1.73
112 113 7.495901 TGCCAAAAAGTGATGTTTGAAATAGA 58.504 30.769 0.00 0.00 36.96 1.98
113 114 7.437862 TGCCAAAAAGTGATGTTTGAAATAGAC 59.562 33.333 0.00 0.00 36.96 2.59
114 115 7.653311 GCCAAAAAGTGATGTTTGAAATAGACT 59.347 33.333 0.00 0.00 36.96 3.24
115 116 8.971321 CCAAAAAGTGATGTTTGAAATAGACTG 58.029 33.333 0.00 0.00 36.96 3.51
116 117 8.482429 CAAAAAGTGATGTTTGAAATAGACTGC 58.518 33.333 0.00 0.00 36.96 4.40
117 118 7.516198 AAAGTGATGTTTGAAATAGACTGCT 57.484 32.000 0.00 0.00 0.00 4.24
118 119 7.516198 AAGTGATGTTTGAAATAGACTGCTT 57.484 32.000 0.00 0.00 0.00 3.91
119 120 6.906659 AGTGATGTTTGAAATAGACTGCTTG 58.093 36.000 0.00 0.00 0.00 4.01
120 121 6.072286 AGTGATGTTTGAAATAGACTGCTTGG 60.072 38.462 0.00 0.00 0.00 3.61
121 122 5.769662 TGATGTTTGAAATAGACTGCTTGGT 59.230 36.000 0.00 0.00 0.00 3.67
122 123 5.437289 TGTTTGAAATAGACTGCTTGGTG 57.563 39.130 0.00 0.00 0.00 4.17
123 124 4.887071 TGTTTGAAATAGACTGCTTGGTGT 59.113 37.500 0.00 0.00 0.00 4.16
124 125 5.359576 TGTTTGAAATAGACTGCTTGGTGTT 59.640 36.000 0.00 0.00 0.00 3.32
125 126 5.437289 TTGAAATAGACTGCTTGGTGTTG 57.563 39.130 0.00 0.00 0.00 3.33
126 127 4.713553 TGAAATAGACTGCTTGGTGTTGA 58.286 39.130 0.00 0.00 0.00 3.18
127 128 5.316167 TGAAATAGACTGCTTGGTGTTGAT 58.684 37.500 0.00 0.00 0.00 2.57
128 129 5.181811 TGAAATAGACTGCTTGGTGTTGATG 59.818 40.000 0.00 0.00 0.00 3.07
129 130 1.242076 AGACTGCTTGGTGTTGATGC 58.758 50.000 0.00 0.00 0.00 3.91
130 131 0.953727 GACTGCTTGGTGTTGATGCA 59.046 50.000 0.00 0.00 0.00 3.96
131 132 1.337703 GACTGCTTGGTGTTGATGCAA 59.662 47.619 0.00 0.00 33.07 4.08
132 133 1.755959 ACTGCTTGGTGTTGATGCAAA 59.244 42.857 0.00 0.00 33.07 3.68
133 134 2.129607 CTGCTTGGTGTTGATGCAAAC 58.870 47.619 0.00 0.00 33.07 2.93
134 135 1.755959 TGCTTGGTGTTGATGCAAACT 59.244 42.857 0.00 0.00 0.00 2.66
135 136 2.168106 TGCTTGGTGTTGATGCAAACTT 59.832 40.909 0.00 0.00 0.00 2.66
136 137 3.197265 GCTTGGTGTTGATGCAAACTTT 58.803 40.909 0.00 0.00 0.00 2.66
137 138 3.001533 GCTTGGTGTTGATGCAAACTTTG 59.998 43.478 0.00 0.00 0.00 2.77
155 156 9.282247 CAAACTTTGCTTAGTGATGAATATGAC 57.718 33.333 0.00 0.00 0.00 3.06
156 157 7.559590 ACTTTGCTTAGTGATGAATATGACC 57.440 36.000 0.00 0.00 0.00 4.02
157 158 7.341805 ACTTTGCTTAGTGATGAATATGACCT 58.658 34.615 0.00 0.00 0.00 3.85
158 159 8.486210 ACTTTGCTTAGTGATGAATATGACCTA 58.514 33.333 0.00 0.00 0.00 3.08
159 160 9.499479 CTTTGCTTAGTGATGAATATGACCTAT 57.501 33.333 0.00 0.00 0.00 2.57
160 161 9.494271 TTTGCTTAGTGATGAATATGACCTATC 57.506 33.333 0.00 0.00 0.00 2.08
161 162 8.193953 TGCTTAGTGATGAATATGACCTATCA 57.806 34.615 0.00 0.00 39.83 2.15
162 163 8.650490 TGCTTAGTGATGAATATGACCTATCAA 58.350 33.333 0.00 0.00 38.69 2.57
163 164 8.930760 GCTTAGTGATGAATATGACCTATCAAC 58.069 37.037 0.00 0.00 38.69 3.18
166 167 8.489676 AGTGATGAATATGACCTATCAACTCT 57.510 34.615 0.00 0.00 38.69 3.24
167 168 8.366401 AGTGATGAATATGACCTATCAACTCTG 58.634 37.037 0.00 0.00 38.69 3.35
168 169 7.601886 GTGATGAATATGACCTATCAACTCTGG 59.398 40.741 0.00 0.00 38.69 3.86
169 170 6.425210 TGAATATGACCTATCAACTCTGGG 57.575 41.667 0.00 0.00 38.69 4.45
170 171 4.899352 ATATGACCTATCAACTCTGGGC 57.101 45.455 0.00 0.00 38.69 5.36
171 172 1.951209 TGACCTATCAACTCTGGGCA 58.049 50.000 0.00 0.00 34.84 5.36
172 173 1.555075 TGACCTATCAACTCTGGGCAC 59.445 52.381 0.00 0.00 31.79 5.01
173 174 1.555075 GACCTATCAACTCTGGGCACA 59.445 52.381 0.00 0.00 0.00 4.57
174 175 2.171448 GACCTATCAACTCTGGGCACAT 59.829 50.000 0.00 0.00 0.00 3.21
175 176 2.578021 ACCTATCAACTCTGGGCACATT 59.422 45.455 0.00 0.00 0.00 2.71
176 177 2.947652 CCTATCAACTCTGGGCACATTG 59.052 50.000 0.00 0.00 0.00 2.82
177 178 2.592102 ATCAACTCTGGGCACATTGT 57.408 45.000 0.00 0.00 0.00 2.71
178 179 2.363306 TCAACTCTGGGCACATTGTT 57.637 45.000 0.00 0.00 0.00 2.83
179 180 2.665165 TCAACTCTGGGCACATTGTTT 58.335 42.857 4.27 0.00 0.00 2.83
180 181 3.826524 TCAACTCTGGGCACATTGTTTA 58.173 40.909 4.27 0.00 0.00 2.01
181 182 4.211125 TCAACTCTGGGCACATTGTTTAA 58.789 39.130 4.27 0.00 0.00 1.52
182 183 4.646945 TCAACTCTGGGCACATTGTTTAAA 59.353 37.500 4.27 0.00 0.00 1.52
183 184 4.853924 ACTCTGGGCACATTGTTTAAAG 57.146 40.909 0.00 0.00 0.00 1.85
184 185 4.469657 ACTCTGGGCACATTGTTTAAAGA 58.530 39.130 0.00 0.00 0.00 2.52
185 186 4.520492 ACTCTGGGCACATTGTTTAAAGAG 59.480 41.667 0.00 11.83 35.78 2.85
186 187 3.826157 TCTGGGCACATTGTTTAAAGAGG 59.174 43.478 0.00 0.00 0.00 3.69
187 188 3.571590 TGGGCACATTGTTTAAAGAGGT 58.428 40.909 0.00 0.00 0.00 3.85
188 189 3.964031 TGGGCACATTGTTTAAAGAGGTT 59.036 39.130 0.00 0.00 0.00 3.50
189 190 5.141182 TGGGCACATTGTTTAAAGAGGTTA 58.859 37.500 0.00 0.00 0.00 2.85
190 191 5.598830 TGGGCACATTGTTTAAAGAGGTTAA 59.401 36.000 0.00 0.00 0.00 2.01
191 192 6.098409 TGGGCACATTGTTTAAAGAGGTTAAA 59.902 34.615 0.00 0.00 38.98 1.52
192 193 7.158697 GGGCACATTGTTTAAAGAGGTTAAAT 58.841 34.615 0.00 0.00 42.29 1.40
193 194 7.659799 GGGCACATTGTTTAAAGAGGTTAAATT 59.340 33.333 0.00 0.00 42.29 1.82
194 195 8.708742 GGCACATTGTTTAAAGAGGTTAAATTC 58.291 33.333 0.00 0.00 42.29 2.17
195 196 8.708742 GCACATTGTTTAAAGAGGTTAAATTCC 58.291 33.333 0.00 0.00 42.29 3.01
196 197 9.981114 CACATTGTTTAAAGAGGTTAAATTCCT 57.019 29.630 0.00 0.00 42.29 3.36
206 207 6.927294 GAGGTTAAATTCCTCCTACATGTG 57.073 41.667 9.11 0.00 43.90 3.21
207 208 5.755849 AGGTTAAATTCCTCCTACATGTGG 58.244 41.667 9.11 5.17 0.00 4.17
208 209 4.887655 GGTTAAATTCCTCCTACATGTGGG 59.112 45.833 21.69 21.69 0.00 4.61
209 210 2.736670 AATTCCTCCTACATGTGGGC 57.263 50.000 22.78 0.00 0.00 5.36
210 211 1.898863 ATTCCTCCTACATGTGGGCT 58.101 50.000 22.78 2.76 0.00 5.19
211 212 1.668826 TTCCTCCTACATGTGGGCTT 58.331 50.000 22.78 0.00 0.00 4.35
212 213 2.561209 TCCTCCTACATGTGGGCTTA 57.439 50.000 22.78 5.68 0.00 3.09
213 214 2.840511 TCCTCCTACATGTGGGCTTAA 58.159 47.619 22.78 5.31 0.00 1.85
214 215 2.771943 TCCTCCTACATGTGGGCTTAAG 59.228 50.000 22.78 14.43 0.00 1.85
215 216 2.505819 CCTCCTACATGTGGGCTTAAGT 59.494 50.000 22.78 0.00 0.00 2.24
216 217 3.535561 CTCCTACATGTGGGCTTAAGTG 58.464 50.000 22.78 3.75 0.00 3.16
217 218 3.178046 TCCTACATGTGGGCTTAAGTGA 58.822 45.455 22.78 0.50 0.00 3.41
218 219 3.780294 TCCTACATGTGGGCTTAAGTGAT 59.220 43.478 22.78 0.00 0.00 3.06
219 220 3.879295 CCTACATGTGGGCTTAAGTGATG 59.121 47.826 16.04 2.75 0.00 3.07
220 221 3.439857 ACATGTGGGCTTAAGTGATGT 57.560 42.857 0.00 3.32 0.00 3.06
221 222 3.766545 ACATGTGGGCTTAAGTGATGTT 58.233 40.909 0.00 0.00 0.00 2.71
222 223 4.151883 ACATGTGGGCTTAAGTGATGTTT 58.848 39.130 0.00 0.00 0.00 2.83
223 224 4.218417 ACATGTGGGCTTAAGTGATGTTTC 59.782 41.667 0.00 0.00 0.00 2.78
224 225 3.153919 TGTGGGCTTAAGTGATGTTTCC 58.846 45.455 4.02 0.00 0.00 3.13
225 226 3.153919 GTGGGCTTAAGTGATGTTTCCA 58.846 45.455 4.02 0.00 0.00 3.53
226 227 3.763897 GTGGGCTTAAGTGATGTTTCCAT 59.236 43.478 4.02 0.00 0.00 3.41
227 228 4.947388 GTGGGCTTAAGTGATGTTTCCATA 59.053 41.667 4.02 0.00 0.00 2.74
228 229 5.417580 GTGGGCTTAAGTGATGTTTCCATAA 59.582 40.000 4.02 0.00 0.00 1.90
229 230 6.096846 GTGGGCTTAAGTGATGTTTCCATAAT 59.903 38.462 4.02 0.00 0.00 1.28
230 231 7.284489 GTGGGCTTAAGTGATGTTTCCATAATA 59.716 37.037 4.02 0.00 0.00 0.98
231 232 7.284489 TGGGCTTAAGTGATGTTTCCATAATAC 59.716 37.037 4.02 0.00 0.00 1.89
232 233 7.284489 GGGCTTAAGTGATGTTTCCATAATACA 59.716 37.037 4.02 0.00 0.00 2.29
233 234 8.850156 GGCTTAAGTGATGTTTCCATAATACAT 58.150 33.333 4.02 0.00 35.33 2.29
241 242 9.995957 TGATGTTTCCATAATACATTGTAAACG 57.004 29.630 0.00 0.00 32.94 3.60
242 243 9.445786 GATGTTTCCATAATACATTGTAAACGG 57.554 33.333 0.00 0.35 32.94 4.44
243 244 7.763356 TGTTTCCATAATACATTGTAAACGGG 58.237 34.615 0.00 1.76 0.00 5.28
244 245 7.610692 TGTTTCCATAATACATTGTAAACGGGA 59.389 33.333 0.00 3.99 0.00 5.14
245 246 8.460428 GTTTCCATAATACATTGTAAACGGGAA 58.540 33.333 14.35 14.35 0.00 3.97
246 247 8.754991 TTCCATAATACATTGTAAACGGGAAT 57.245 30.769 14.35 0.00 0.00 3.01
247 248 8.160521 TCCATAATACATTGTAAACGGGAATG 57.839 34.615 0.00 0.00 33.99 2.67
248 249 7.776030 TCCATAATACATTGTAAACGGGAATGT 59.224 33.333 0.00 0.00 41.86 2.71
249 250 9.058174 CCATAATACATTGTAAACGGGAATGTA 57.942 33.333 0.00 0.00 43.30 2.29
253 254 6.827586 ACATTGTAAACGGGAATGTAATGT 57.172 33.333 0.00 0.00 38.29 2.71
254 255 6.616947 ACATTGTAAACGGGAATGTAATGTG 58.383 36.000 0.00 0.00 38.29 3.21
255 256 5.630661 TTGTAAACGGGAATGTAATGTGG 57.369 39.130 0.00 0.00 0.00 4.17
256 257 3.440872 TGTAAACGGGAATGTAATGTGGC 59.559 43.478 0.00 0.00 0.00 5.01
257 258 1.091537 AACGGGAATGTAATGTGGCG 58.908 50.000 0.00 0.00 0.00 5.69
258 259 0.746563 ACGGGAATGTAATGTGGCGG 60.747 55.000 0.00 0.00 0.00 6.13
259 260 1.733526 GGGAATGTAATGTGGCGGC 59.266 57.895 0.00 0.00 0.00 6.53
260 261 0.751643 GGGAATGTAATGTGGCGGCT 60.752 55.000 11.43 0.00 0.00 5.52
261 262 0.663153 GGAATGTAATGTGGCGGCTC 59.337 55.000 11.43 7.43 0.00 4.70
262 263 1.378531 GAATGTAATGTGGCGGCTCA 58.621 50.000 16.35 16.35 0.00 4.26
263 264 1.064060 GAATGTAATGTGGCGGCTCAC 59.936 52.381 16.35 12.72 38.09 3.51
268 269 2.191908 TGTGGCGGCTCACACTTT 59.808 55.556 16.76 0.00 42.05 2.66
269 270 1.448069 TGTGGCGGCTCACACTTTA 59.552 52.632 16.76 0.00 42.05 1.85
270 271 0.602638 TGTGGCGGCTCACACTTTAG 60.603 55.000 16.76 0.00 42.05 1.85
271 272 1.671054 TGGCGGCTCACACTTTAGC 60.671 57.895 11.43 0.00 38.03 3.09
272 273 1.671054 GGCGGCTCACACTTTAGCA 60.671 57.895 0.00 0.00 40.61 3.49
273 274 1.639298 GGCGGCTCACACTTTAGCAG 61.639 60.000 0.00 0.00 40.61 4.24
274 275 1.790387 CGGCTCACACTTTAGCAGC 59.210 57.895 0.00 0.00 40.61 5.25
275 276 0.950555 CGGCTCACACTTTAGCAGCA 60.951 55.000 0.00 0.00 40.61 4.41
276 277 0.519077 GGCTCACACTTTAGCAGCAC 59.481 55.000 0.00 0.00 40.61 4.40
277 278 1.229428 GCTCACACTTTAGCAGCACA 58.771 50.000 0.00 0.00 38.63 4.57
278 279 1.196354 GCTCACACTTTAGCAGCACAG 59.804 52.381 0.00 0.00 38.63 3.66
279 280 1.802960 CTCACACTTTAGCAGCACAGG 59.197 52.381 0.00 0.00 0.00 4.00
280 281 0.877071 CACACTTTAGCAGCACAGGG 59.123 55.000 0.00 0.00 0.00 4.45
281 282 0.474184 ACACTTTAGCAGCACAGGGT 59.526 50.000 0.00 0.00 0.00 4.34
282 283 0.877071 CACTTTAGCAGCACAGGGTG 59.123 55.000 0.00 0.00 45.24 4.61
283 284 0.474184 ACTTTAGCAGCACAGGGTGT 59.526 50.000 0.00 0.00 44.31 4.16
284 285 1.133792 ACTTTAGCAGCACAGGGTGTT 60.134 47.619 0.00 0.00 44.31 3.32
285 286 1.956477 CTTTAGCAGCACAGGGTGTTT 59.044 47.619 0.00 0.00 44.31 2.83
286 287 1.317613 TTAGCAGCACAGGGTGTTTG 58.682 50.000 0.00 0.00 44.31 2.93
287 288 0.182537 TAGCAGCACAGGGTGTTTGT 59.817 50.000 0.00 0.00 44.31 2.83
288 289 0.182537 AGCAGCACAGGGTGTTTGTA 59.817 50.000 0.00 0.00 44.31 2.41
289 290 1.202927 AGCAGCACAGGGTGTTTGTAT 60.203 47.619 0.00 0.00 44.31 2.29
290 291 1.068333 GCAGCACAGGGTGTTTGTATG 60.068 52.381 0.00 0.00 44.31 2.39
291 292 1.541147 CAGCACAGGGTGTTTGTATGG 59.459 52.381 0.00 0.00 37.73 2.74
292 293 1.423541 AGCACAGGGTGTTTGTATGGA 59.576 47.619 0.00 0.00 35.75 3.41
293 294 2.158534 AGCACAGGGTGTTTGTATGGAA 60.159 45.455 0.00 0.00 35.75 3.53
294 295 2.228822 GCACAGGGTGTTTGTATGGAAG 59.771 50.000 0.00 0.00 35.75 3.46
295 296 2.228822 CACAGGGTGTTTGTATGGAAGC 59.771 50.000 0.00 0.00 0.00 3.86
296 297 2.108250 ACAGGGTGTTTGTATGGAAGCT 59.892 45.455 0.00 0.00 0.00 3.74
297 298 2.489329 CAGGGTGTTTGTATGGAAGCTG 59.511 50.000 0.00 0.00 0.00 4.24
298 299 1.818674 GGGTGTTTGTATGGAAGCTGG 59.181 52.381 0.00 0.00 0.00 4.85
299 300 1.202348 GGTGTTTGTATGGAAGCTGGC 59.798 52.381 0.00 0.00 0.00 4.85
300 301 2.162681 GTGTTTGTATGGAAGCTGGCT 58.837 47.619 0.00 0.00 0.00 4.75
301 302 2.095059 GTGTTTGTATGGAAGCTGGCTG 60.095 50.000 0.00 0.00 0.00 4.85
302 303 2.162681 GTTTGTATGGAAGCTGGCTGT 58.837 47.619 0.00 0.00 0.00 4.40
303 304 2.558359 GTTTGTATGGAAGCTGGCTGTT 59.442 45.455 0.00 0.00 0.00 3.16
304 305 2.113860 TGTATGGAAGCTGGCTGTTC 57.886 50.000 0.00 0.00 0.00 3.18
305 306 1.630369 TGTATGGAAGCTGGCTGTTCT 59.370 47.619 0.00 0.00 0.00 3.01
306 307 2.012673 GTATGGAAGCTGGCTGTTCTG 58.987 52.381 0.00 0.00 0.00 3.02
307 308 0.694771 ATGGAAGCTGGCTGTTCTGA 59.305 50.000 0.00 0.00 0.00 3.27
308 309 0.473755 TGGAAGCTGGCTGTTCTGAA 59.526 50.000 0.00 0.00 0.00 3.02
309 310 1.133823 TGGAAGCTGGCTGTTCTGAAA 60.134 47.619 0.00 0.00 0.00 2.69
310 311 1.956477 GGAAGCTGGCTGTTCTGAAAA 59.044 47.619 0.00 0.00 0.00 2.29
311 312 2.560105 GGAAGCTGGCTGTTCTGAAAAT 59.440 45.455 0.00 0.00 0.00 1.82
312 313 3.006217 GGAAGCTGGCTGTTCTGAAAATT 59.994 43.478 0.00 0.00 0.00 1.82
313 314 3.655276 AGCTGGCTGTTCTGAAAATTG 57.345 42.857 0.00 0.00 0.00 2.32
314 315 2.298163 AGCTGGCTGTTCTGAAAATTGG 59.702 45.455 0.00 0.00 0.00 3.16
315 316 2.680577 CTGGCTGTTCTGAAAATTGGC 58.319 47.619 0.00 0.00 0.00 4.52
316 317 2.298163 CTGGCTGTTCTGAAAATTGGCT 59.702 45.455 0.00 0.00 0.00 4.75
317 318 3.495331 TGGCTGTTCTGAAAATTGGCTA 58.505 40.909 0.00 0.00 0.00 3.93
318 319 3.507233 TGGCTGTTCTGAAAATTGGCTAG 59.493 43.478 0.00 0.00 0.00 3.42
319 320 3.119352 GGCTGTTCTGAAAATTGGCTAGG 60.119 47.826 0.00 0.00 0.00 3.02
320 321 3.674410 GCTGTTCTGAAAATTGGCTAGGC 60.674 47.826 9.85 9.85 0.00 3.93
333 334 1.852633 GCTAGGCCAATTTCCCAAGT 58.147 50.000 5.01 0.00 0.00 3.16
334 335 2.179427 GCTAGGCCAATTTCCCAAGTT 58.821 47.619 5.01 0.00 0.00 2.66
335 336 2.567169 GCTAGGCCAATTTCCCAAGTTT 59.433 45.455 5.01 0.00 0.00 2.66
336 337 3.617288 GCTAGGCCAATTTCCCAAGTTTG 60.617 47.826 5.01 0.00 0.00 2.93
337 338 2.407562 AGGCCAATTTCCCAAGTTTGT 58.592 42.857 5.01 0.00 0.00 2.83
338 339 3.582164 AGGCCAATTTCCCAAGTTTGTA 58.418 40.909 5.01 0.00 0.00 2.41
339 340 4.167319 AGGCCAATTTCCCAAGTTTGTAT 58.833 39.130 5.01 0.00 0.00 2.29
340 341 4.222810 AGGCCAATTTCCCAAGTTTGTATC 59.777 41.667 5.01 0.00 0.00 2.24
341 342 4.020662 GGCCAATTTCCCAAGTTTGTATCA 60.021 41.667 0.00 0.00 0.00 2.15
342 343 5.170748 GCCAATTTCCCAAGTTTGTATCAG 58.829 41.667 0.00 0.00 0.00 2.90
343 344 5.047377 GCCAATTTCCCAAGTTTGTATCAGA 60.047 40.000 0.00 0.00 0.00 3.27
344 345 6.351286 GCCAATTTCCCAAGTTTGTATCAGAT 60.351 38.462 0.00 0.00 0.00 2.90
345 346 7.037438 CCAATTTCCCAAGTTTGTATCAGATG 58.963 38.462 0.00 0.00 0.00 2.90
346 347 5.643379 TTTCCCAAGTTTGTATCAGATGC 57.357 39.130 0.00 0.00 0.00 3.91
347 348 4.574674 TCCCAAGTTTGTATCAGATGCT 57.425 40.909 0.00 0.00 0.00 3.79
348 349 4.264253 TCCCAAGTTTGTATCAGATGCTG 58.736 43.478 0.00 0.00 0.00 4.41
349 350 4.012374 CCCAAGTTTGTATCAGATGCTGT 58.988 43.478 0.00 0.00 32.61 4.40
350 351 5.045942 TCCCAAGTTTGTATCAGATGCTGTA 60.046 40.000 0.00 0.00 32.61 2.74
351 352 5.295292 CCCAAGTTTGTATCAGATGCTGTAG 59.705 44.000 0.00 0.00 32.61 2.74
352 353 5.220739 CCAAGTTTGTATCAGATGCTGTAGC 60.221 44.000 0.00 0.00 42.50 3.58
353 354 5.350504 AGTTTGTATCAGATGCTGTAGCT 57.649 39.130 5.38 0.00 42.66 3.32
354 355 5.114780 AGTTTGTATCAGATGCTGTAGCTG 58.885 41.667 4.56 4.56 44.13 4.24
355 356 3.740631 TGTATCAGATGCTGTAGCTGG 57.259 47.619 10.99 0.00 42.99 4.85
356 357 2.224137 TGTATCAGATGCTGTAGCTGGC 60.224 50.000 10.99 0.00 42.99 4.85
357 358 0.249784 ATCAGATGCTGTAGCTGGCG 60.250 55.000 10.99 0.00 42.99 5.69
358 359 1.142531 CAGATGCTGTAGCTGGCGA 59.857 57.895 2.92 0.00 39.13 5.54
359 360 0.249784 CAGATGCTGTAGCTGGCGAT 60.250 55.000 2.92 0.00 39.13 4.58
360 361 1.000171 CAGATGCTGTAGCTGGCGATA 60.000 52.381 2.92 0.00 39.13 2.92
361 362 1.898472 AGATGCTGTAGCTGGCGATAT 59.102 47.619 5.38 0.00 42.66 1.63
362 363 1.998315 GATGCTGTAGCTGGCGATATG 59.002 52.381 5.38 0.00 42.66 1.78
363 364 0.752658 TGCTGTAGCTGGCGATATGT 59.247 50.000 5.38 0.00 42.66 2.29
364 365 1.269778 TGCTGTAGCTGGCGATATGTC 60.270 52.381 5.38 0.00 42.66 3.06
365 366 1.937108 GCTGTAGCTGGCGATATGTCC 60.937 57.143 0.00 0.00 38.21 4.02
366 367 1.341209 CTGTAGCTGGCGATATGTCCA 59.659 52.381 0.00 0.00 0.00 4.02
369 370 3.942500 CTGGCGATATGTCCAGCG 58.057 61.111 6.85 0.00 42.79 5.18
370 371 1.068083 CTGGCGATATGTCCAGCGT 59.932 57.895 6.85 0.00 42.79 5.07
371 372 0.530650 CTGGCGATATGTCCAGCGTT 60.531 55.000 6.85 0.00 42.79 4.84
372 373 0.107897 TGGCGATATGTCCAGCGTTT 60.108 50.000 0.00 0.00 0.00 3.60
373 374 1.014352 GGCGATATGTCCAGCGTTTT 58.986 50.000 0.00 0.00 0.00 2.43
374 375 2.206750 GGCGATATGTCCAGCGTTTTA 58.793 47.619 0.00 0.00 0.00 1.52
375 376 2.610374 GGCGATATGTCCAGCGTTTTAA 59.390 45.455 0.00 0.00 0.00 1.52
376 377 3.250040 GGCGATATGTCCAGCGTTTTAAT 59.750 43.478 0.00 0.00 0.00 1.40
377 378 4.449743 GGCGATATGTCCAGCGTTTTAATA 59.550 41.667 0.00 0.00 0.00 0.98
378 379 5.121768 GGCGATATGTCCAGCGTTTTAATAT 59.878 40.000 0.00 0.00 0.00 1.28
379 380 6.311935 GGCGATATGTCCAGCGTTTTAATATA 59.688 38.462 0.00 0.00 0.00 0.86
380 381 7.011109 GGCGATATGTCCAGCGTTTTAATATAT 59.989 37.037 0.00 0.00 0.00 0.86
381 382 8.388103 GCGATATGTCCAGCGTTTTAATATATT 58.612 33.333 2.97 2.97 0.00 1.28
387 388 9.562408 TGTCCAGCGTTTTAATATATTAATGGA 57.438 29.630 22.45 22.45 35.60 3.41
392 393 9.554724 AGCGTTTTAATATATTAATGGAATGCG 57.445 29.630 23.72 17.64 37.46 4.73
393 394 9.337091 GCGTTTTAATATATTAATGGAATGCGT 57.663 29.630 19.66 0.00 32.78 5.24
400 401 9.677567 AATATATTAATGGAATGCGTTGTGTTC 57.322 29.630 0.00 0.00 0.00 3.18
401 402 2.723124 AATGGAATGCGTTGTGTTCC 57.277 45.000 0.00 0.00 41.37 3.62
402 403 1.909700 ATGGAATGCGTTGTGTTCCT 58.090 45.000 0.00 0.00 41.52 3.36
403 404 1.686355 TGGAATGCGTTGTGTTCCTT 58.314 45.000 0.00 0.00 41.52 3.36
404 405 2.852449 TGGAATGCGTTGTGTTCCTTA 58.148 42.857 0.00 0.00 41.52 2.69
405 406 3.215151 TGGAATGCGTTGTGTTCCTTAA 58.785 40.909 0.00 0.00 41.52 1.85
406 407 3.632604 TGGAATGCGTTGTGTTCCTTAAA 59.367 39.130 0.00 0.00 41.52 1.52
407 408 4.098044 TGGAATGCGTTGTGTTCCTTAAAA 59.902 37.500 0.00 0.00 41.52 1.52
408 409 5.221342 TGGAATGCGTTGTGTTCCTTAAAAT 60.221 36.000 0.00 0.00 41.52 1.82
409 410 5.118510 GGAATGCGTTGTGTTCCTTAAAATG 59.881 40.000 0.00 0.00 38.65 2.32
410 411 3.971150 TGCGTTGTGTTCCTTAAAATGG 58.029 40.909 0.00 0.00 0.00 3.16
411 412 3.632604 TGCGTTGTGTTCCTTAAAATGGA 59.367 39.130 0.00 0.00 0.00 3.41
412 413 4.098044 TGCGTTGTGTTCCTTAAAATGGAA 59.902 37.500 0.00 0.00 40.85 3.53
413 414 5.044558 GCGTTGTGTTCCTTAAAATGGAAA 58.955 37.500 0.00 0.00 44.14 3.13
414 415 5.520649 GCGTTGTGTTCCTTAAAATGGAAAA 59.479 36.000 0.00 0.00 44.14 2.29
415 416 6.292114 GCGTTGTGTTCCTTAAAATGGAAAAG 60.292 38.462 0.00 0.00 44.14 2.27
416 417 6.975772 CGTTGTGTTCCTTAAAATGGAAAAGA 59.024 34.615 0.00 0.00 44.14 2.52
417 418 7.489757 CGTTGTGTTCCTTAAAATGGAAAAGAA 59.510 33.333 0.00 0.00 44.14 2.52
418 419 9.157104 GTTGTGTTCCTTAAAATGGAAAAGAAA 57.843 29.630 0.00 0.00 44.14 2.52
419 420 9.726438 TTGTGTTCCTTAAAATGGAAAAGAAAA 57.274 25.926 0.00 0.00 44.14 2.29
420 421 9.726438 TGTGTTCCTTAAAATGGAAAAGAAAAA 57.274 25.926 0.00 0.00 44.14 1.94
422 423 9.389755 TGTTCCTTAAAATGGAAAAGAAAAAGG 57.610 29.630 0.00 0.00 44.14 3.11
423 424 8.836413 GTTCCTTAAAATGGAAAAGAAAAAGGG 58.164 33.333 0.00 0.00 44.14 3.95
424 425 8.325477 TCCTTAAAATGGAAAAGAAAAAGGGA 57.675 30.769 0.00 0.00 33.38 4.20
425 426 8.944138 TCCTTAAAATGGAAAAGAAAAAGGGAT 58.056 29.630 0.00 0.00 33.38 3.85
426 427 9.573166 CCTTAAAATGGAAAAGAAAAAGGGATT 57.427 29.630 0.00 0.00 0.00 3.01
428 429 6.882610 AAATGGAAAAGAAAAAGGGATTGC 57.117 33.333 0.00 0.00 0.00 3.56
429 430 5.830799 ATGGAAAAGAAAAAGGGATTGCT 57.169 34.783 0.00 0.00 0.00 3.91
430 431 5.628797 TGGAAAAGAAAAAGGGATTGCTT 57.371 34.783 0.00 0.00 0.00 3.91
431 432 6.739331 TGGAAAAGAAAAAGGGATTGCTTA 57.261 33.333 0.00 0.00 0.00 3.09
432 433 6.521162 TGGAAAAGAAAAAGGGATTGCTTAC 58.479 36.000 0.00 0.00 0.00 2.34
433 434 6.326323 TGGAAAAGAAAAAGGGATTGCTTACT 59.674 34.615 0.00 0.00 0.00 2.24
434 435 6.868864 GGAAAAGAAAAAGGGATTGCTTACTC 59.131 38.462 0.00 0.00 0.00 2.59
435 436 7.255977 GGAAAAGAAAAAGGGATTGCTTACTCT 60.256 37.037 0.00 0.00 0.00 3.24
436 437 6.825944 AAGAAAAAGGGATTGCTTACTCTC 57.174 37.500 0.00 0.00 0.00 3.20
437 438 4.938226 AGAAAAAGGGATTGCTTACTCTCG 59.062 41.667 0.00 0.00 0.00 4.04
438 439 2.990066 AAGGGATTGCTTACTCTCGG 57.010 50.000 0.00 0.00 0.00 4.63
439 440 2.160721 AGGGATTGCTTACTCTCGGA 57.839 50.000 0.00 0.00 0.00 4.55
440 441 1.757699 AGGGATTGCTTACTCTCGGAC 59.242 52.381 0.00 0.00 0.00 4.79
441 442 1.480954 GGGATTGCTTACTCTCGGACA 59.519 52.381 0.00 0.00 0.00 4.02
442 443 2.541556 GGATTGCTTACTCTCGGACAC 58.458 52.381 0.00 0.00 0.00 3.67
443 444 2.186076 GATTGCTTACTCTCGGACACG 58.814 52.381 0.00 0.00 42.74 4.49
444 445 0.956633 TTGCTTACTCTCGGACACGT 59.043 50.000 0.00 0.00 41.85 4.49
445 446 0.520404 TGCTTACTCTCGGACACGTC 59.480 55.000 0.00 0.00 41.85 4.34
446 447 0.803740 GCTTACTCTCGGACACGTCT 59.196 55.000 0.00 0.00 41.85 4.18
447 448 1.199558 GCTTACTCTCGGACACGTCTT 59.800 52.381 0.00 0.00 41.85 3.01
448 449 2.728535 GCTTACTCTCGGACACGTCTTC 60.729 54.545 0.00 0.00 41.85 2.87
449 450 2.174363 TACTCTCGGACACGTCTTCA 57.826 50.000 0.00 0.00 41.85 3.02
450 451 0.592148 ACTCTCGGACACGTCTTCAC 59.408 55.000 0.00 0.00 41.85 3.18
451 452 0.875728 CTCTCGGACACGTCTTCACT 59.124 55.000 0.00 0.00 41.85 3.41
452 453 1.267261 CTCTCGGACACGTCTTCACTT 59.733 52.381 0.00 0.00 41.85 3.16
453 454 2.483106 CTCTCGGACACGTCTTCACTTA 59.517 50.000 0.00 0.00 41.85 2.24
454 455 3.079578 TCTCGGACACGTCTTCACTTAT 58.920 45.455 0.00 0.00 41.85 1.73
455 456 3.119955 TCTCGGACACGTCTTCACTTATG 60.120 47.826 0.00 0.00 41.85 1.90
456 457 1.654105 CGGACACGTCTTCACTTATGC 59.346 52.381 0.00 0.00 34.81 3.14
457 458 2.671351 CGGACACGTCTTCACTTATGCT 60.671 50.000 0.00 0.00 34.81 3.79
458 459 3.326747 GGACACGTCTTCACTTATGCTT 58.673 45.455 0.00 0.00 0.00 3.91
459 460 4.491676 GGACACGTCTTCACTTATGCTTA 58.508 43.478 0.00 0.00 0.00 3.09
460 461 4.927425 GGACACGTCTTCACTTATGCTTAA 59.073 41.667 0.00 0.00 0.00 1.85
461 462 5.581085 GGACACGTCTTCACTTATGCTTAAT 59.419 40.000 0.00 0.00 0.00 1.40
462 463 6.237861 GGACACGTCTTCACTTATGCTTAATC 60.238 42.308 0.00 0.00 0.00 1.75
463 464 6.163476 ACACGTCTTCACTTATGCTTAATCA 58.837 36.000 0.00 0.00 0.00 2.57
464 465 6.649141 ACACGTCTTCACTTATGCTTAATCAA 59.351 34.615 0.00 0.00 0.00 2.57
465 466 7.148573 ACACGTCTTCACTTATGCTTAATCAAG 60.149 37.037 0.00 0.00 34.66 3.02
466 467 6.874134 ACGTCTTCACTTATGCTTAATCAAGT 59.126 34.615 0.00 0.00 34.00 3.16
467 468 7.148573 ACGTCTTCACTTATGCTTAATCAAGTG 60.149 37.037 6.92 6.92 45.89 3.16
486 488 5.520748 AGTGAGGGTTCCATTCAAGTAAT 57.479 39.130 0.00 0.00 0.00 1.89
487 489 6.636454 AGTGAGGGTTCCATTCAAGTAATA 57.364 37.500 0.00 0.00 0.00 0.98
488 490 7.027874 AGTGAGGGTTCCATTCAAGTAATAA 57.972 36.000 0.00 0.00 0.00 1.40
496 498 9.705290 GGTTCCATTCAAGTAATAAAACAACAT 57.295 29.630 0.00 0.00 0.00 2.71
550 552 1.404391 GATCAATCAGCTGGCACCAAG 59.596 52.381 15.13 0.00 0.00 3.61
551 553 0.111061 TCAATCAGCTGGCACCAAGT 59.889 50.000 15.13 0.00 0.00 3.16
829 934 2.932234 AAGAGTGTCGTCGGCTGGG 61.932 63.158 0.00 0.00 0.00 4.45
1523 1628 5.049818 CAGCACACTGTTTTTCTCTTAGGAG 60.050 44.000 0.00 0.00 39.22 3.69
2358 2463 2.417107 CCTTGCTGTGCACAGTGAAAAA 60.417 45.455 39.30 25.81 45.45 1.94
2582 2687 2.551071 GCCTGCCTTGACTTACTGTCTT 60.551 50.000 0.00 0.00 45.54 3.01
2603 2709 6.745907 GTCTTTTCAACAACTTGGTGTAGAAC 59.254 38.462 6.70 0.00 36.24 3.01
2715 2821 2.260869 AACATGCGGACCTGTGCAC 61.261 57.895 10.75 10.75 45.07 4.57
2899 5612 8.834749 AGGAGAACTTTATTTCAACTCTACAC 57.165 34.615 0.00 0.00 0.00 2.90
2900 5613 8.429641 AGGAGAACTTTATTTCAACTCTACACA 58.570 33.333 0.00 0.00 0.00 3.72
2901 5614 8.496751 GGAGAACTTTATTTCAACTCTACACAC 58.503 37.037 0.00 0.00 0.00 3.82
2902 5615 8.958119 AGAACTTTATTTCAACTCTACACACA 57.042 30.769 0.00 0.00 0.00 3.72
2903 5616 9.046296 AGAACTTTATTTCAACTCTACACACAG 57.954 33.333 0.00 0.00 0.00 3.66
2904 5617 8.732746 AACTTTATTTCAACTCTACACACAGT 57.267 30.769 0.00 0.00 0.00 3.55
2905 5618 8.366671 ACTTTATTTCAACTCTACACACAGTC 57.633 34.615 0.00 0.00 0.00 3.51
2906 5619 7.441458 ACTTTATTTCAACTCTACACACAGTCC 59.559 37.037 0.00 0.00 0.00 3.85
2907 5620 5.552870 ATTTCAACTCTACACACAGTCCT 57.447 39.130 0.00 0.00 0.00 3.85
2908 5621 4.322080 TTCAACTCTACACACAGTCCTG 57.678 45.455 0.00 0.00 0.00 3.86
2909 5622 3.296854 TCAACTCTACACACAGTCCTGT 58.703 45.455 0.00 0.00 46.17 4.00
2910 5623 3.318275 TCAACTCTACACACAGTCCTGTC 59.682 47.826 0.00 0.00 42.83 3.51
3225 5976 2.548057 ACATGCTTCTGTTTACACGTGG 59.452 45.455 21.57 0.08 0.00 4.94
3247 5998 3.607078 GCACTTGCTGAAGGAACTTAACG 60.607 47.826 0.00 0.00 43.82 3.18
3357 6124 6.276847 CCTAGATTCTTCTAGTCGTTTGCAT 58.723 40.000 8.72 0.00 46.87 3.96
3373 6140 1.628340 TGCATACACCCAGTTAGTGCT 59.372 47.619 0.00 0.00 38.87 4.40
3532 6299 8.246180 TCATTTCTTCATTCAGCTTTTATGGTC 58.754 33.333 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.521947 AACATACTCGAGGTTACCTGC 57.478 47.619 18.41 0.00 31.76 4.85
1 2 5.068234 TGAAACATACTCGAGGTTACCTG 57.932 43.478 18.41 1.25 31.76 4.00
4 5 5.575995 GGTTCTGAAACATACTCGAGGTTAC 59.424 44.000 18.41 5.97 37.10 2.50
5 6 5.244402 TGGTTCTGAAACATACTCGAGGTTA 59.756 40.000 18.41 0.72 37.10 2.85
7 8 3.576982 TGGTTCTGAAACATACTCGAGGT 59.423 43.478 18.41 1.73 37.10 3.85
8 9 4.188247 TGGTTCTGAAACATACTCGAGG 57.812 45.455 18.41 1.00 37.10 4.63
9 10 6.811665 TGTAATGGTTCTGAAACATACTCGAG 59.188 38.462 20.38 11.84 37.10 4.04
10 11 6.693466 TGTAATGGTTCTGAAACATACTCGA 58.307 36.000 20.38 2.74 37.10 4.04
11 12 6.961359 TGTAATGGTTCTGAAACATACTCG 57.039 37.500 20.38 0.00 37.10 4.18
12 13 7.189512 GCATGTAATGGTTCTGAAACATACTC 58.810 38.462 20.38 13.71 46.86 2.59
13 14 7.088589 GCATGTAATGGTTCTGAAACATACT 57.911 36.000 20.38 9.30 46.86 2.12
27 28 5.121811 AGCTAAGAGTTCAGCATGTAATGG 58.878 41.667 0.00 0.00 46.86 3.16
29 30 7.391554 TGAAAAGCTAAGAGTTCAGCATGTAAT 59.608 33.333 0.00 0.00 40.36 1.89
30 31 6.710295 TGAAAAGCTAAGAGTTCAGCATGTAA 59.290 34.615 0.00 0.00 40.36 2.41
31 32 6.230472 TGAAAAGCTAAGAGTTCAGCATGTA 58.770 36.000 0.00 0.00 40.36 2.29
32 33 5.065914 TGAAAAGCTAAGAGTTCAGCATGT 58.934 37.500 0.00 0.00 40.36 3.21
33 34 5.618056 TGAAAAGCTAAGAGTTCAGCATG 57.382 39.130 0.00 0.00 40.36 4.06
34 35 5.532406 TGTTGAAAAGCTAAGAGTTCAGCAT 59.468 36.000 8.45 0.00 40.36 3.79
35 36 4.881273 TGTTGAAAAGCTAAGAGTTCAGCA 59.119 37.500 8.45 8.45 40.36 4.41
36 37 5.424121 TGTTGAAAAGCTAAGAGTTCAGC 57.576 39.130 0.00 0.00 38.09 4.26
49 50 2.220133 GCATGCACAGCTTGTTGAAAAG 59.780 45.455 14.21 0.00 36.33 2.27
50 51 2.159071 AGCATGCACAGCTTGTTGAAAA 60.159 40.909 21.98 0.00 39.87 2.29
51 52 1.409790 AGCATGCACAGCTTGTTGAAA 59.590 42.857 21.98 0.00 39.87 2.69
52 53 1.034356 AGCATGCACAGCTTGTTGAA 58.966 45.000 21.98 0.00 39.87 2.69
53 54 0.312729 CAGCATGCACAGCTTGTTGA 59.687 50.000 21.98 0.00 43.54 3.18
54 55 2.809181 CAGCATGCACAGCTTGTTG 58.191 52.632 21.98 1.51 41.14 3.33
66 67 2.364324 AGCCCATTTGAATAGCAGCATG 59.636 45.455 0.00 0.00 40.87 4.06
67 68 2.364324 CAGCCCATTTGAATAGCAGCAT 59.636 45.455 0.00 0.00 0.00 3.79
68 69 1.752498 CAGCCCATTTGAATAGCAGCA 59.248 47.619 0.00 0.00 0.00 4.41
69 70 1.537562 GCAGCCCATTTGAATAGCAGC 60.538 52.381 0.00 0.00 0.00 5.25
70 71 1.068127 GGCAGCCCATTTGAATAGCAG 59.932 52.381 0.00 0.00 0.00 4.24
71 72 1.113788 GGCAGCCCATTTGAATAGCA 58.886 50.000 0.00 0.00 0.00 3.49
72 73 1.113788 TGGCAGCCCATTTGAATAGC 58.886 50.000 9.64 0.00 35.79 2.97
73 74 3.891422 TTTGGCAGCCCATTTGAATAG 57.109 42.857 9.64 0.00 41.78 1.73
74 75 4.041444 ACTTTTTGGCAGCCCATTTGAATA 59.959 37.500 9.64 0.00 41.78 1.75
75 76 3.181441 ACTTTTTGGCAGCCCATTTGAAT 60.181 39.130 9.64 0.00 41.78 2.57
76 77 2.172293 ACTTTTTGGCAGCCCATTTGAA 59.828 40.909 9.64 0.00 41.78 2.69
77 78 1.767681 ACTTTTTGGCAGCCCATTTGA 59.232 42.857 9.64 0.00 41.78 2.69
78 79 1.874872 CACTTTTTGGCAGCCCATTTG 59.125 47.619 9.64 0.00 41.78 2.32
79 80 1.767681 TCACTTTTTGGCAGCCCATTT 59.232 42.857 9.64 0.00 41.78 2.32
80 81 1.422531 TCACTTTTTGGCAGCCCATT 58.577 45.000 9.64 0.00 41.78 3.16
81 82 1.276989 CATCACTTTTTGGCAGCCCAT 59.723 47.619 9.64 0.00 41.78 4.00
82 83 0.680618 CATCACTTTTTGGCAGCCCA 59.319 50.000 9.64 0.00 40.06 5.36
83 84 0.681175 ACATCACTTTTTGGCAGCCC 59.319 50.000 9.64 0.00 0.00 5.19
84 85 2.531522 AACATCACTTTTTGGCAGCC 57.468 45.000 3.66 3.66 0.00 4.85
85 86 3.456280 TCAAACATCACTTTTTGGCAGC 58.544 40.909 0.00 0.00 34.14 5.25
86 87 6.607735 ATTTCAAACATCACTTTTTGGCAG 57.392 33.333 0.00 0.00 34.14 4.85
87 88 7.437862 GTCTATTTCAAACATCACTTTTTGGCA 59.562 33.333 0.00 0.00 34.14 4.92
88 89 7.653311 AGTCTATTTCAAACATCACTTTTTGGC 59.347 33.333 0.00 0.00 34.14 4.52
89 90 8.971321 CAGTCTATTTCAAACATCACTTTTTGG 58.029 33.333 0.00 0.00 34.14 3.28
90 91 8.482429 GCAGTCTATTTCAAACATCACTTTTTG 58.518 33.333 0.00 0.00 34.57 2.44
91 92 8.416329 AGCAGTCTATTTCAAACATCACTTTTT 58.584 29.630 0.00 0.00 0.00 1.94
92 93 7.945134 AGCAGTCTATTTCAAACATCACTTTT 58.055 30.769 0.00 0.00 0.00 2.27
93 94 7.516198 AGCAGTCTATTTCAAACATCACTTT 57.484 32.000 0.00 0.00 0.00 2.66
94 95 7.365741 CAAGCAGTCTATTTCAAACATCACTT 58.634 34.615 0.00 0.00 0.00 3.16
95 96 6.072286 CCAAGCAGTCTATTTCAAACATCACT 60.072 38.462 0.00 0.00 0.00 3.41
96 97 6.088824 CCAAGCAGTCTATTTCAAACATCAC 58.911 40.000 0.00 0.00 0.00 3.06
97 98 5.769662 ACCAAGCAGTCTATTTCAAACATCA 59.230 36.000 0.00 0.00 0.00 3.07
98 99 6.088824 CACCAAGCAGTCTATTTCAAACATC 58.911 40.000 0.00 0.00 0.00 3.06
99 100 5.536161 ACACCAAGCAGTCTATTTCAAACAT 59.464 36.000 0.00 0.00 0.00 2.71
100 101 4.887071 ACACCAAGCAGTCTATTTCAAACA 59.113 37.500 0.00 0.00 0.00 2.83
101 102 5.438761 ACACCAAGCAGTCTATTTCAAAC 57.561 39.130 0.00 0.00 0.00 2.93
102 103 5.592282 TCAACACCAAGCAGTCTATTTCAAA 59.408 36.000 0.00 0.00 0.00 2.69
103 104 5.129634 TCAACACCAAGCAGTCTATTTCAA 58.870 37.500 0.00 0.00 0.00 2.69
104 105 4.713553 TCAACACCAAGCAGTCTATTTCA 58.286 39.130 0.00 0.00 0.00 2.69
105 106 5.634896 CATCAACACCAAGCAGTCTATTTC 58.365 41.667 0.00 0.00 0.00 2.17
106 107 4.082571 GCATCAACACCAAGCAGTCTATTT 60.083 41.667 0.00 0.00 0.00 1.40
107 108 3.441572 GCATCAACACCAAGCAGTCTATT 59.558 43.478 0.00 0.00 0.00 1.73
108 109 3.012518 GCATCAACACCAAGCAGTCTAT 58.987 45.455 0.00 0.00 0.00 1.98
109 110 2.224499 TGCATCAACACCAAGCAGTCTA 60.224 45.455 0.00 0.00 0.00 2.59
110 111 1.242076 GCATCAACACCAAGCAGTCT 58.758 50.000 0.00 0.00 0.00 3.24
111 112 0.953727 TGCATCAACACCAAGCAGTC 59.046 50.000 0.00 0.00 0.00 3.51
112 113 1.401761 TTGCATCAACACCAAGCAGT 58.598 45.000 0.00 0.00 36.47 4.40
113 114 2.129607 GTTTGCATCAACACCAAGCAG 58.870 47.619 0.00 0.00 36.47 4.24
114 115 1.755959 AGTTTGCATCAACACCAAGCA 59.244 42.857 4.19 0.00 0.00 3.91
115 116 2.514205 AGTTTGCATCAACACCAAGC 57.486 45.000 4.19 0.00 0.00 4.01
116 117 4.782252 CAAAGTTTGCATCAACACCAAG 57.218 40.909 1.96 0.00 0.00 3.61
129 130 9.282247 GTCATATTCATCACTAAGCAAAGTTTG 57.718 33.333 11.41 11.41 0.00 2.93
130 131 8.462016 GGTCATATTCATCACTAAGCAAAGTTT 58.538 33.333 0.00 0.00 0.00 2.66
131 132 7.831193 AGGTCATATTCATCACTAAGCAAAGTT 59.169 33.333 0.00 0.00 0.00 2.66
132 133 7.341805 AGGTCATATTCATCACTAAGCAAAGT 58.658 34.615 0.00 0.00 0.00 2.66
133 134 7.798596 AGGTCATATTCATCACTAAGCAAAG 57.201 36.000 0.00 0.00 0.00 2.77
134 135 9.494271 GATAGGTCATATTCATCACTAAGCAAA 57.506 33.333 0.00 0.00 0.00 3.68
135 136 8.650490 TGATAGGTCATATTCATCACTAAGCAA 58.350 33.333 0.00 0.00 0.00 3.91
136 137 8.193953 TGATAGGTCATATTCATCACTAAGCA 57.806 34.615 0.00 0.00 0.00 3.91
137 138 8.930760 GTTGATAGGTCATATTCATCACTAAGC 58.069 37.037 0.00 0.00 33.56 3.09
140 141 9.593565 AGAGTTGATAGGTCATATTCATCACTA 57.406 33.333 0.00 0.00 33.56 2.74
141 142 8.366401 CAGAGTTGATAGGTCATATTCATCACT 58.634 37.037 0.00 0.00 33.56 3.41
142 143 7.601886 CCAGAGTTGATAGGTCATATTCATCAC 59.398 40.741 0.00 0.00 33.56 3.06
143 144 7.256439 CCCAGAGTTGATAGGTCATATTCATCA 60.256 40.741 0.00 0.00 33.56 3.07
144 145 7.102346 CCCAGAGTTGATAGGTCATATTCATC 58.898 42.308 0.00 0.00 33.56 2.92
145 146 6.521427 GCCCAGAGTTGATAGGTCATATTCAT 60.521 42.308 0.00 0.00 33.56 2.57
146 147 5.221722 GCCCAGAGTTGATAGGTCATATTCA 60.222 44.000 0.00 0.00 33.56 2.57
147 148 5.221722 TGCCCAGAGTTGATAGGTCATATTC 60.222 44.000 0.00 0.00 33.56 1.75
148 149 4.660303 TGCCCAGAGTTGATAGGTCATATT 59.340 41.667 0.00 0.00 33.56 1.28
149 150 4.040952 GTGCCCAGAGTTGATAGGTCATAT 59.959 45.833 0.00 0.00 33.56 1.78
150 151 3.388024 GTGCCCAGAGTTGATAGGTCATA 59.612 47.826 0.00 0.00 33.56 2.15
151 152 2.171448 GTGCCCAGAGTTGATAGGTCAT 59.829 50.000 0.00 0.00 33.56 3.06
152 153 1.555075 GTGCCCAGAGTTGATAGGTCA 59.445 52.381 0.00 0.00 0.00 4.02
153 154 1.555075 TGTGCCCAGAGTTGATAGGTC 59.445 52.381 0.00 0.00 0.00 3.85
154 155 1.656587 TGTGCCCAGAGTTGATAGGT 58.343 50.000 0.00 0.00 0.00 3.08
155 156 2.947652 CAATGTGCCCAGAGTTGATAGG 59.052 50.000 0.00 0.00 0.00 2.57
156 157 3.614092 ACAATGTGCCCAGAGTTGATAG 58.386 45.455 0.00 0.00 0.00 2.08
157 158 3.719268 ACAATGTGCCCAGAGTTGATA 57.281 42.857 0.00 0.00 0.00 2.15
158 159 2.592102 ACAATGTGCCCAGAGTTGAT 57.408 45.000 0.00 0.00 0.00 2.57
159 160 2.363306 AACAATGTGCCCAGAGTTGA 57.637 45.000 0.00 0.00 0.00 3.18
160 161 4.582701 TTAAACAATGTGCCCAGAGTTG 57.417 40.909 0.00 0.00 0.00 3.16
161 162 4.892934 TCTTTAAACAATGTGCCCAGAGTT 59.107 37.500 0.00 0.00 0.00 3.01
162 163 4.469657 TCTTTAAACAATGTGCCCAGAGT 58.530 39.130 0.00 0.00 0.00 3.24
163 164 4.082571 CCTCTTTAAACAATGTGCCCAGAG 60.083 45.833 0.00 0.00 0.00 3.35
164 165 3.826157 CCTCTTTAAACAATGTGCCCAGA 59.174 43.478 0.00 0.00 0.00 3.86
165 166 3.573967 ACCTCTTTAAACAATGTGCCCAG 59.426 43.478 0.00 0.00 0.00 4.45
166 167 3.571590 ACCTCTTTAAACAATGTGCCCA 58.428 40.909 0.00 0.00 0.00 5.36
167 168 4.600692 AACCTCTTTAAACAATGTGCCC 57.399 40.909 0.00 0.00 0.00 5.36
168 169 8.601845 AATTTAACCTCTTTAAACAATGTGCC 57.398 30.769 0.00 0.00 41.47 5.01
169 170 8.708742 GGAATTTAACCTCTTTAAACAATGTGC 58.291 33.333 0.00 0.00 41.47 4.57
170 171 9.981114 AGGAATTTAACCTCTTTAAACAATGTG 57.019 29.630 0.00 0.00 41.47 3.21
184 185 5.340027 CCCACATGTAGGAGGAATTTAACCT 60.340 44.000 3.97 0.00 40.80 3.50
185 186 4.887655 CCCACATGTAGGAGGAATTTAACC 59.112 45.833 3.97 0.00 0.00 2.85
186 187 4.338400 GCCCACATGTAGGAGGAATTTAAC 59.662 45.833 15.10 0.00 0.00 2.01
187 188 4.229582 AGCCCACATGTAGGAGGAATTTAA 59.770 41.667 15.10 0.00 0.00 1.52
188 189 3.785887 AGCCCACATGTAGGAGGAATTTA 59.214 43.478 15.10 0.00 0.00 1.40
189 190 2.582636 AGCCCACATGTAGGAGGAATTT 59.417 45.455 15.10 0.00 0.00 1.82
190 191 2.208872 AGCCCACATGTAGGAGGAATT 58.791 47.619 15.10 0.00 0.00 2.17
191 192 1.898863 AGCCCACATGTAGGAGGAAT 58.101 50.000 15.10 0.00 0.00 3.01
192 193 1.668826 AAGCCCACATGTAGGAGGAA 58.331 50.000 15.10 0.00 0.00 3.36
193 194 2.561209 TAAGCCCACATGTAGGAGGA 57.439 50.000 15.10 0.00 0.00 3.71
194 195 2.505819 ACTTAAGCCCACATGTAGGAGG 59.494 50.000 15.10 3.59 0.00 4.30
195 196 3.197766 TCACTTAAGCCCACATGTAGGAG 59.802 47.826 15.10 4.91 0.00 3.69
196 197 3.178046 TCACTTAAGCCCACATGTAGGA 58.822 45.455 15.10 0.00 0.00 2.94
197 198 3.627395 TCACTTAAGCCCACATGTAGG 57.373 47.619 5.87 5.87 0.00 3.18
198 199 4.517285 ACATCACTTAAGCCCACATGTAG 58.483 43.478 1.29 0.00 0.00 2.74
199 200 4.568072 ACATCACTTAAGCCCACATGTA 57.432 40.909 1.29 0.00 0.00 2.29
200 201 3.439857 ACATCACTTAAGCCCACATGT 57.560 42.857 1.29 0.00 0.00 3.21
201 202 4.380867 GGAAACATCACTTAAGCCCACATG 60.381 45.833 1.29 0.00 0.00 3.21
202 203 3.763897 GGAAACATCACTTAAGCCCACAT 59.236 43.478 1.29 0.00 0.00 3.21
203 204 3.153919 GGAAACATCACTTAAGCCCACA 58.846 45.455 1.29 0.00 0.00 4.17
204 205 3.153919 TGGAAACATCACTTAAGCCCAC 58.846 45.455 1.29 0.00 33.40 4.61
205 206 3.517296 TGGAAACATCACTTAAGCCCA 57.483 42.857 1.29 0.00 33.40 5.36
218 219 7.610692 TCCCGTTTACAATGTATTATGGAAACA 59.389 33.333 12.53 0.00 46.20 2.83
219 220 7.987649 TCCCGTTTACAATGTATTATGGAAAC 58.012 34.615 12.92 3.99 43.70 2.78
220 221 8.577048 TTCCCGTTTACAATGTATTATGGAAA 57.423 30.769 12.92 0.74 0.00 3.13
221 222 8.625651 CATTCCCGTTTACAATGTATTATGGAA 58.374 33.333 13.50 13.50 0.00 3.53
222 223 7.776030 ACATTCCCGTTTACAATGTATTATGGA 59.224 33.333 12.92 6.89 38.65 3.41
223 224 7.936584 ACATTCCCGTTTACAATGTATTATGG 58.063 34.615 0.00 1.10 38.65 2.74
227 228 8.962679 ACATTACATTCCCGTTTACAATGTATT 58.037 29.630 0.00 0.37 40.80 1.89
228 229 8.402472 CACATTACATTCCCGTTTACAATGTAT 58.598 33.333 0.00 0.00 40.80 2.29
229 230 7.148222 CCACATTACATTCCCGTTTACAATGTA 60.148 37.037 0.00 0.00 40.44 2.29
230 231 6.349777 CCACATTACATTCCCGTTTACAATGT 60.350 38.462 0.00 0.00 42.20 2.71
231 232 6.033341 CCACATTACATTCCCGTTTACAATG 58.967 40.000 0.00 0.00 34.29 2.82
232 233 5.393678 GCCACATTACATTCCCGTTTACAAT 60.394 40.000 0.00 0.00 0.00 2.71
233 234 4.082679 GCCACATTACATTCCCGTTTACAA 60.083 41.667 0.00 0.00 0.00 2.41
234 235 3.440872 GCCACATTACATTCCCGTTTACA 59.559 43.478 0.00 0.00 0.00 2.41
235 236 3.486209 CGCCACATTACATTCCCGTTTAC 60.486 47.826 0.00 0.00 0.00 2.01
236 237 2.678836 CGCCACATTACATTCCCGTTTA 59.321 45.455 0.00 0.00 0.00 2.01
237 238 1.470890 CGCCACATTACATTCCCGTTT 59.529 47.619 0.00 0.00 0.00 3.60
238 239 1.091537 CGCCACATTACATTCCCGTT 58.908 50.000 0.00 0.00 0.00 4.44
239 240 0.746563 CCGCCACATTACATTCCCGT 60.747 55.000 0.00 0.00 0.00 5.28
240 241 2.021722 CCGCCACATTACATTCCCG 58.978 57.895 0.00 0.00 0.00 5.14
241 242 0.751643 AGCCGCCACATTACATTCCC 60.752 55.000 0.00 0.00 0.00 3.97
242 243 0.663153 GAGCCGCCACATTACATTCC 59.337 55.000 0.00 0.00 0.00 3.01
243 244 1.064060 GTGAGCCGCCACATTACATTC 59.936 52.381 7.01 0.00 37.04 2.67
244 245 1.094785 GTGAGCCGCCACATTACATT 58.905 50.000 7.01 0.00 37.04 2.71
245 246 0.035534 TGTGAGCCGCCACATTACAT 60.036 50.000 9.74 0.00 41.63 2.29
246 247 1.373059 TGTGAGCCGCCACATTACA 59.627 52.632 9.74 0.00 41.63 2.41
247 248 4.294523 TGTGAGCCGCCACATTAC 57.705 55.556 9.74 0.00 41.63 1.89
251 252 0.602638 CTAAAGTGTGAGCCGCCACA 60.603 55.000 9.74 9.74 43.98 4.17
252 253 1.912371 GCTAAAGTGTGAGCCGCCAC 61.912 60.000 5.35 5.35 37.55 5.01
253 254 1.671054 GCTAAAGTGTGAGCCGCCA 60.671 57.895 0.00 0.00 32.25 5.69
254 255 1.639298 CTGCTAAAGTGTGAGCCGCC 61.639 60.000 0.00 0.00 37.94 6.13
255 256 1.790387 CTGCTAAAGTGTGAGCCGC 59.210 57.895 0.00 0.00 37.94 6.53
256 257 0.950555 TGCTGCTAAAGTGTGAGCCG 60.951 55.000 0.00 0.00 37.94 5.52
257 258 0.519077 GTGCTGCTAAAGTGTGAGCC 59.481 55.000 0.00 0.00 37.94 4.70
258 259 1.196354 CTGTGCTGCTAAAGTGTGAGC 59.804 52.381 0.00 0.00 39.25 4.26
259 260 1.802960 CCTGTGCTGCTAAAGTGTGAG 59.197 52.381 0.00 0.00 0.00 3.51
260 261 1.543208 CCCTGTGCTGCTAAAGTGTGA 60.543 52.381 0.00 0.00 0.00 3.58
261 262 0.877071 CCCTGTGCTGCTAAAGTGTG 59.123 55.000 0.00 0.00 0.00 3.82
262 263 0.474184 ACCCTGTGCTGCTAAAGTGT 59.526 50.000 0.00 0.00 0.00 3.55
263 264 0.877071 CACCCTGTGCTGCTAAAGTG 59.123 55.000 0.00 0.00 0.00 3.16
264 265 0.474184 ACACCCTGTGCTGCTAAAGT 59.526 50.000 0.00 0.00 36.98 2.66
265 266 1.609208 AACACCCTGTGCTGCTAAAG 58.391 50.000 0.00 0.00 36.98 1.85
266 267 1.680735 CAAACACCCTGTGCTGCTAAA 59.319 47.619 0.00 0.00 36.98 1.85
267 268 1.317613 CAAACACCCTGTGCTGCTAA 58.682 50.000 0.00 0.00 36.98 3.09
268 269 0.182537 ACAAACACCCTGTGCTGCTA 59.817 50.000 0.00 0.00 36.98 3.49
269 270 0.182537 TACAAACACCCTGTGCTGCT 59.817 50.000 0.00 0.00 36.98 4.24
270 271 1.068333 CATACAAACACCCTGTGCTGC 60.068 52.381 0.00 0.00 36.98 5.25
271 272 1.541147 CCATACAAACACCCTGTGCTG 59.459 52.381 0.00 0.00 36.98 4.41
272 273 1.423541 TCCATACAAACACCCTGTGCT 59.576 47.619 0.00 0.00 36.98 4.40
273 274 1.904287 TCCATACAAACACCCTGTGC 58.096 50.000 0.00 0.00 36.98 4.57
274 275 2.228822 GCTTCCATACAAACACCCTGTG 59.771 50.000 0.00 0.00 39.75 3.66
275 276 2.108250 AGCTTCCATACAAACACCCTGT 59.892 45.455 0.00 0.00 0.00 4.00
276 277 2.489329 CAGCTTCCATACAAACACCCTG 59.511 50.000 0.00 0.00 0.00 4.45
277 278 2.555227 CCAGCTTCCATACAAACACCCT 60.555 50.000 0.00 0.00 0.00 4.34
278 279 1.818674 CCAGCTTCCATACAAACACCC 59.181 52.381 0.00 0.00 0.00 4.61
279 280 1.202348 GCCAGCTTCCATACAAACACC 59.798 52.381 0.00 0.00 0.00 4.16
280 281 2.095059 CAGCCAGCTTCCATACAAACAC 60.095 50.000 0.00 0.00 0.00 3.32
281 282 2.161855 CAGCCAGCTTCCATACAAACA 58.838 47.619 0.00 0.00 0.00 2.83
282 283 2.162681 ACAGCCAGCTTCCATACAAAC 58.837 47.619 0.00 0.00 0.00 2.93
283 284 2.584835 ACAGCCAGCTTCCATACAAA 57.415 45.000 0.00 0.00 0.00 2.83
284 285 2.040278 AGAACAGCCAGCTTCCATACAA 59.960 45.455 0.00 0.00 0.00 2.41
285 286 1.630369 AGAACAGCCAGCTTCCATACA 59.370 47.619 0.00 0.00 0.00 2.29
286 287 2.012673 CAGAACAGCCAGCTTCCATAC 58.987 52.381 0.00 0.00 0.00 2.39
287 288 1.908619 TCAGAACAGCCAGCTTCCATA 59.091 47.619 0.00 0.00 0.00 2.74
288 289 0.694771 TCAGAACAGCCAGCTTCCAT 59.305 50.000 0.00 0.00 0.00 3.41
289 290 0.473755 TTCAGAACAGCCAGCTTCCA 59.526 50.000 0.00 0.00 0.00 3.53
290 291 1.609208 TTTCAGAACAGCCAGCTTCC 58.391 50.000 0.00 0.00 0.00 3.46
291 292 3.930634 ATTTTCAGAACAGCCAGCTTC 57.069 42.857 0.00 0.00 0.00 3.86
292 293 3.243975 CCAATTTTCAGAACAGCCAGCTT 60.244 43.478 0.00 0.00 0.00 3.74
293 294 2.298163 CCAATTTTCAGAACAGCCAGCT 59.702 45.455 0.00 0.00 0.00 4.24
294 295 2.680577 CCAATTTTCAGAACAGCCAGC 58.319 47.619 0.00 0.00 0.00 4.85
295 296 2.298163 AGCCAATTTTCAGAACAGCCAG 59.702 45.455 0.00 0.00 0.00 4.85
296 297 2.318908 AGCCAATTTTCAGAACAGCCA 58.681 42.857 0.00 0.00 0.00 4.75
297 298 3.119352 CCTAGCCAATTTTCAGAACAGCC 60.119 47.826 0.00 0.00 0.00 4.85
298 299 3.674410 GCCTAGCCAATTTTCAGAACAGC 60.674 47.826 0.00 0.00 0.00 4.40
299 300 4.102035 GCCTAGCCAATTTTCAGAACAG 57.898 45.455 0.00 0.00 0.00 3.16
314 315 1.852633 ACTTGGGAAATTGGCCTAGC 58.147 50.000 3.32 0.00 0.00 3.42
315 316 3.578282 ACAAACTTGGGAAATTGGCCTAG 59.422 43.478 3.32 0.00 0.00 3.02
316 317 3.582164 ACAAACTTGGGAAATTGGCCTA 58.418 40.909 3.32 0.00 0.00 3.93
317 318 2.407562 ACAAACTTGGGAAATTGGCCT 58.592 42.857 3.32 0.00 0.00 5.19
318 319 2.928801 ACAAACTTGGGAAATTGGCC 57.071 45.000 0.00 0.00 0.00 5.36
319 320 5.047377 TCTGATACAAACTTGGGAAATTGGC 60.047 40.000 0.00 0.00 0.00 4.52
320 321 6.588719 TCTGATACAAACTTGGGAAATTGG 57.411 37.500 0.00 0.00 0.00 3.16
321 322 6.532657 GCATCTGATACAAACTTGGGAAATTG 59.467 38.462 0.00 0.00 0.00 2.32
322 323 6.438425 AGCATCTGATACAAACTTGGGAAATT 59.562 34.615 0.00 0.00 0.00 1.82
323 324 5.954150 AGCATCTGATACAAACTTGGGAAAT 59.046 36.000 0.00 0.00 0.00 2.17
324 325 5.183713 CAGCATCTGATACAAACTTGGGAAA 59.816 40.000 0.00 0.00 32.44 3.13
325 326 4.701651 CAGCATCTGATACAAACTTGGGAA 59.298 41.667 0.00 0.00 32.44 3.97
326 327 4.263462 ACAGCATCTGATACAAACTTGGGA 60.263 41.667 0.29 0.00 35.18 4.37
327 328 4.012374 ACAGCATCTGATACAAACTTGGG 58.988 43.478 0.29 0.00 35.18 4.12
328 329 5.220739 GCTACAGCATCTGATACAAACTTGG 60.221 44.000 0.29 0.00 41.59 3.61
329 330 5.583854 AGCTACAGCATCTGATACAAACTTG 59.416 40.000 3.70 0.00 45.16 3.16
330 331 5.583854 CAGCTACAGCATCTGATACAAACTT 59.416 40.000 3.70 0.00 45.16 2.66
331 332 5.114780 CAGCTACAGCATCTGATACAAACT 58.885 41.667 3.70 0.00 45.16 2.66
332 333 4.272018 CCAGCTACAGCATCTGATACAAAC 59.728 45.833 3.70 0.00 45.16 2.93
333 334 4.445453 CCAGCTACAGCATCTGATACAAA 58.555 43.478 3.70 0.00 45.16 2.83
334 335 3.742327 GCCAGCTACAGCATCTGATACAA 60.742 47.826 3.70 0.00 45.16 2.41
335 336 2.224137 GCCAGCTACAGCATCTGATACA 60.224 50.000 3.70 0.00 45.16 2.29
336 337 2.411904 GCCAGCTACAGCATCTGATAC 58.588 52.381 3.70 0.00 45.16 2.24
337 338 1.000171 CGCCAGCTACAGCATCTGATA 60.000 52.381 3.70 0.00 45.16 2.15
338 339 0.249784 CGCCAGCTACAGCATCTGAT 60.250 55.000 3.70 0.00 45.16 2.90
339 340 1.142531 CGCCAGCTACAGCATCTGA 59.857 57.895 3.70 0.00 45.16 3.27
340 341 0.249784 ATCGCCAGCTACAGCATCTG 60.250 55.000 3.70 0.00 45.16 2.90
341 342 1.332195 TATCGCCAGCTACAGCATCT 58.668 50.000 3.70 0.00 45.16 2.90
342 343 1.998315 CATATCGCCAGCTACAGCATC 59.002 52.381 3.70 0.00 45.16 3.91
343 344 1.345741 ACATATCGCCAGCTACAGCAT 59.654 47.619 3.70 0.00 45.16 3.79
344 345 0.752658 ACATATCGCCAGCTACAGCA 59.247 50.000 3.70 0.00 45.16 4.41
345 346 1.423395 GACATATCGCCAGCTACAGC 58.577 55.000 0.00 0.00 42.49 4.40
346 347 1.341209 TGGACATATCGCCAGCTACAG 59.659 52.381 0.00 0.00 0.00 2.74
347 348 1.341209 CTGGACATATCGCCAGCTACA 59.659 52.381 7.30 0.00 44.53 2.74
348 349 2.071688 CTGGACATATCGCCAGCTAC 57.928 55.000 7.30 0.00 44.53 3.58
353 354 0.107897 AAACGCTGGACATATCGCCA 60.108 50.000 0.00 0.00 0.00 5.69
354 355 1.014352 AAAACGCTGGACATATCGCC 58.986 50.000 0.00 0.00 0.00 5.54
355 356 3.936902 TTAAAACGCTGGACATATCGC 57.063 42.857 0.00 0.00 0.00 4.58
361 362 9.562408 TCCATTAATATATTAAAACGCTGGACA 57.438 29.630 22.45 10.43 34.23 4.02
366 367 9.554724 CGCATTCCATTAATATATTAAAACGCT 57.445 29.630 19.23 2.87 36.02 5.07
367 368 9.337091 ACGCATTCCATTAATATATTAAAACGC 57.663 29.630 19.23 13.10 36.02 4.84
374 375 9.677567 GAACACAACGCATTCCATTAATATATT 57.322 29.630 2.97 2.97 0.00 1.28
375 376 8.296713 GGAACACAACGCATTCCATTAATATAT 58.703 33.333 0.00 0.00 41.40 0.86
376 377 7.500892 AGGAACACAACGCATTCCATTAATATA 59.499 33.333 5.13 0.00 43.75 0.86
377 378 6.321181 AGGAACACAACGCATTCCATTAATAT 59.679 34.615 5.13 0.00 43.75 1.28
378 379 5.650266 AGGAACACAACGCATTCCATTAATA 59.350 36.000 5.13 0.00 43.75 0.98
379 380 4.462483 AGGAACACAACGCATTCCATTAAT 59.538 37.500 5.13 0.00 43.75 1.40
380 381 3.823873 AGGAACACAACGCATTCCATTAA 59.176 39.130 5.13 0.00 43.75 1.40
381 382 3.417101 AGGAACACAACGCATTCCATTA 58.583 40.909 5.13 0.00 43.75 1.90
382 383 2.238521 AGGAACACAACGCATTCCATT 58.761 42.857 5.13 0.00 43.75 3.16
383 384 1.909700 AGGAACACAACGCATTCCAT 58.090 45.000 5.13 0.00 43.75 3.41
384 385 1.686355 AAGGAACACAACGCATTCCA 58.314 45.000 5.13 0.00 43.75 3.53
385 386 3.907894 TTAAGGAACACAACGCATTCC 57.092 42.857 0.00 0.00 41.97 3.01
386 387 5.118510 CCATTTTAAGGAACACAACGCATTC 59.881 40.000 0.00 0.00 0.00 2.67
387 388 4.987912 CCATTTTAAGGAACACAACGCATT 59.012 37.500 0.00 0.00 0.00 3.56
388 389 4.279671 TCCATTTTAAGGAACACAACGCAT 59.720 37.500 0.00 0.00 30.71 4.73
389 390 3.632604 TCCATTTTAAGGAACACAACGCA 59.367 39.130 0.00 0.00 30.71 5.24
390 391 4.231718 TCCATTTTAAGGAACACAACGC 57.768 40.909 0.00 0.00 30.71 4.84
391 392 6.975772 TCTTTTCCATTTTAAGGAACACAACG 59.024 34.615 0.00 0.00 44.41 4.10
392 393 8.710835 TTCTTTTCCATTTTAAGGAACACAAC 57.289 30.769 0.00 0.00 44.41 3.32
393 394 9.726438 TTTTCTTTTCCATTTTAAGGAACACAA 57.274 25.926 0.00 0.00 44.41 3.33
394 395 9.726438 TTTTTCTTTTCCATTTTAAGGAACACA 57.274 25.926 0.00 0.00 44.41 3.72
396 397 9.389755 CCTTTTTCTTTTCCATTTTAAGGAACA 57.610 29.630 0.00 0.00 44.41 3.18
397 398 8.836413 CCCTTTTTCTTTTCCATTTTAAGGAAC 58.164 33.333 0.00 0.00 44.41 3.62
398 399 8.773216 TCCCTTTTTCTTTTCCATTTTAAGGAA 58.227 29.630 0.00 0.00 43.13 3.36
399 400 8.325477 TCCCTTTTTCTTTTCCATTTTAAGGA 57.675 30.769 0.00 0.00 33.19 3.36
400 401 9.573166 AATCCCTTTTTCTTTTCCATTTTAAGG 57.427 29.630 0.00 0.00 0.00 2.69
402 403 8.845227 GCAATCCCTTTTTCTTTTCCATTTTAA 58.155 29.630 0.00 0.00 0.00 1.52
403 404 8.217111 AGCAATCCCTTTTTCTTTTCCATTTTA 58.783 29.630 0.00 0.00 0.00 1.52
404 405 7.062322 AGCAATCCCTTTTTCTTTTCCATTTT 58.938 30.769 0.00 0.00 0.00 1.82
405 406 6.604171 AGCAATCCCTTTTTCTTTTCCATTT 58.396 32.000 0.00 0.00 0.00 2.32
406 407 6.191657 AGCAATCCCTTTTTCTTTTCCATT 57.808 33.333 0.00 0.00 0.00 3.16
407 408 5.830799 AGCAATCCCTTTTTCTTTTCCAT 57.169 34.783 0.00 0.00 0.00 3.41
408 409 5.628797 AAGCAATCCCTTTTTCTTTTCCA 57.371 34.783 0.00 0.00 0.00 3.53
409 410 6.759272 AGTAAGCAATCCCTTTTTCTTTTCC 58.241 36.000 0.00 0.00 0.00 3.13
410 411 7.661968 AGAGTAAGCAATCCCTTTTTCTTTTC 58.338 34.615 0.00 0.00 0.00 2.29
411 412 7.522236 CGAGAGTAAGCAATCCCTTTTTCTTTT 60.522 37.037 0.00 0.00 0.00 2.27
412 413 6.072452 CGAGAGTAAGCAATCCCTTTTTCTTT 60.072 38.462 0.00 0.00 0.00 2.52
413 414 5.412904 CGAGAGTAAGCAATCCCTTTTTCTT 59.587 40.000 0.00 0.00 0.00 2.52
414 415 4.938226 CGAGAGTAAGCAATCCCTTTTTCT 59.062 41.667 0.00 0.00 0.00 2.52
415 416 4.095036 CCGAGAGTAAGCAATCCCTTTTTC 59.905 45.833 0.00 0.00 0.00 2.29
416 417 4.010349 CCGAGAGTAAGCAATCCCTTTTT 58.990 43.478 0.00 0.00 0.00 1.94
417 418 3.263425 TCCGAGAGTAAGCAATCCCTTTT 59.737 43.478 0.00 0.00 0.00 2.27
418 419 2.838202 TCCGAGAGTAAGCAATCCCTTT 59.162 45.455 0.00 0.00 0.00 3.11
419 420 2.168728 GTCCGAGAGTAAGCAATCCCTT 59.831 50.000 0.00 0.00 0.00 3.95
420 421 1.757699 GTCCGAGAGTAAGCAATCCCT 59.242 52.381 0.00 0.00 0.00 4.20
421 422 1.480954 TGTCCGAGAGTAAGCAATCCC 59.519 52.381 0.00 0.00 0.00 3.85
422 423 2.541556 GTGTCCGAGAGTAAGCAATCC 58.458 52.381 0.00 0.00 0.00 3.01
423 424 2.186076 CGTGTCCGAGAGTAAGCAATC 58.814 52.381 0.00 0.00 35.63 2.67
424 425 1.544691 ACGTGTCCGAGAGTAAGCAAT 59.455 47.619 0.00 0.00 37.88 3.56
425 426 0.956633 ACGTGTCCGAGAGTAAGCAA 59.043 50.000 0.00 0.00 37.88 3.91
426 427 0.520404 GACGTGTCCGAGAGTAAGCA 59.480 55.000 0.00 0.00 37.88 3.91
427 428 0.803740 AGACGTGTCCGAGAGTAAGC 59.196 55.000 0.00 0.00 37.88 3.09
428 429 2.483106 TGAAGACGTGTCCGAGAGTAAG 59.517 50.000 0.00 0.00 37.88 2.34
429 430 2.225019 GTGAAGACGTGTCCGAGAGTAA 59.775 50.000 0.00 0.00 37.88 2.24
430 431 1.802960 GTGAAGACGTGTCCGAGAGTA 59.197 52.381 0.00 0.00 37.88 2.59
431 432 0.592148 GTGAAGACGTGTCCGAGAGT 59.408 55.000 0.00 0.00 37.88 3.24
432 433 0.875728 AGTGAAGACGTGTCCGAGAG 59.124 55.000 0.00 0.00 37.88 3.20
433 434 1.315690 AAGTGAAGACGTGTCCGAGA 58.684 50.000 0.00 0.00 37.88 4.04
434 435 2.983402 TAAGTGAAGACGTGTCCGAG 57.017 50.000 0.00 0.00 37.88 4.63
435 436 2.670229 GCATAAGTGAAGACGTGTCCGA 60.670 50.000 0.00 0.00 37.88 4.55
436 437 1.654105 GCATAAGTGAAGACGTGTCCG 59.346 52.381 0.00 0.00 40.83 4.79
437 438 2.960819 AGCATAAGTGAAGACGTGTCC 58.039 47.619 0.00 0.00 0.00 4.02
438 439 6.310467 TGATTAAGCATAAGTGAAGACGTGTC 59.690 38.462 0.00 0.00 0.00 3.67
439 440 6.163476 TGATTAAGCATAAGTGAAGACGTGT 58.837 36.000 0.00 0.00 0.00 4.49
440 441 6.647212 TGATTAAGCATAAGTGAAGACGTG 57.353 37.500 0.00 0.00 0.00 4.49
441 442 6.874134 ACTTGATTAAGCATAAGTGAAGACGT 59.126 34.615 0.00 0.00 37.43 4.34
442 443 7.295952 ACTTGATTAAGCATAAGTGAAGACG 57.704 36.000 0.00 0.00 37.43 4.18
448 449 5.882557 ACCCTCACTTGATTAAGCATAAGTG 59.117 40.000 16.06 16.06 46.94 3.16
449 450 6.067217 ACCCTCACTTGATTAAGCATAAGT 57.933 37.500 0.00 0.00 37.43 2.24
450 451 6.038714 GGAACCCTCACTTGATTAAGCATAAG 59.961 42.308 0.00 0.00 37.43 1.73
451 452 5.885912 GGAACCCTCACTTGATTAAGCATAA 59.114 40.000 0.00 0.00 37.43 1.90
452 453 5.045213 TGGAACCCTCACTTGATTAAGCATA 60.045 40.000 0.00 0.00 37.43 3.14
453 454 4.263905 TGGAACCCTCACTTGATTAAGCAT 60.264 41.667 0.00 0.00 37.43 3.79
454 455 3.073798 TGGAACCCTCACTTGATTAAGCA 59.926 43.478 0.00 0.00 37.43 3.91
455 456 3.686016 TGGAACCCTCACTTGATTAAGC 58.314 45.455 0.00 0.00 37.43 3.09
456 457 5.945784 TGAATGGAACCCTCACTTGATTAAG 59.054 40.000 0.00 0.00 39.86 1.85
457 458 5.886609 TGAATGGAACCCTCACTTGATTAA 58.113 37.500 0.00 0.00 0.00 1.40
458 459 5.512942 TGAATGGAACCCTCACTTGATTA 57.487 39.130 0.00 0.00 0.00 1.75
459 460 4.387026 TGAATGGAACCCTCACTTGATT 57.613 40.909 0.00 0.00 0.00 2.57
460 461 4.202609 ACTTGAATGGAACCCTCACTTGAT 60.203 41.667 0.00 0.00 0.00 2.57
461 462 3.138283 ACTTGAATGGAACCCTCACTTGA 59.862 43.478 0.00 0.00 0.00 3.02
462 463 3.490348 ACTTGAATGGAACCCTCACTTG 58.510 45.455 0.00 0.00 0.00 3.16
463 464 3.884037 ACTTGAATGGAACCCTCACTT 57.116 42.857 0.00 0.00 0.00 3.16
464 465 4.993705 TTACTTGAATGGAACCCTCACT 57.006 40.909 0.00 0.00 0.00 3.41
465 466 7.696992 TTTATTACTTGAATGGAACCCTCAC 57.303 36.000 0.00 0.00 0.00 3.51
466 467 7.726291 TGTTTTATTACTTGAATGGAACCCTCA 59.274 33.333 0.00 0.00 0.00 3.86
467 468 8.117813 TGTTTTATTACTTGAATGGAACCCTC 57.882 34.615 0.00 0.00 0.00 4.30
468 469 8.364894 GTTGTTTTATTACTTGAATGGAACCCT 58.635 33.333 0.00 0.00 0.00 4.34
469 470 8.145122 TGTTGTTTTATTACTTGAATGGAACCC 58.855 33.333 0.00 0.00 0.00 4.11
470 471 9.705290 ATGTTGTTTTATTACTTGAATGGAACC 57.295 29.630 0.00 0.00 0.00 3.62
486 488 3.502979 GGTGCTCCCGTAATGTTGTTTTA 59.497 43.478 0.00 0.00 0.00 1.52
487 489 2.295070 GGTGCTCCCGTAATGTTGTTTT 59.705 45.455 0.00 0.00 0.00 2.43
488 490 1.883926 GGTGCTCCCGTAATGTTGTTT 59.116 47.619 0.00 0.00 0.00 2.83
496 498 1.271856 TGAAGATGGTGCTCCCGTAA 58.728 50.000 1.59 0.00 35.15 3.18
497 499 1.271856 TTGAAGATGGTGCTCCCGTA 58.728 50.000 1.59 0.00 35.15 4.02
498 500 0.400213 TTTGAAGATGGTGCTCCCGT 59.600 50.000 1.59 0.00 35.15 5.28
499 501 1.200020 GTTTTGAAGATGGTGCTCCCG 59.800 52.381 1.59 0.00 35.15 5.14
500 502 2.519013 AGTTTTGAAGATGGTGCTCCC 58.481 47.619 1.59 0.00 0.00 4.30
550 552 3.190535 CACATTGGCTTGGTTGGTACTAC 59.809 47.826 0.00 0.00 0.00 2.73
551 553 3.417101 CACATTGGCTTGGTTGGTACTA 58.583 45.455 0.00 0.00 0.00 1.82
910 1015 2.024655 AGGTGATCACATTTGGCTCCAT 60.025 45.455 26.47 0.00 0.00 3.41
976 1081 1.338973 CACAAGTGCCTTGACAGCATT 59.661 47.619 18.22 0.00 43.42 3.56
978 1083 0.107263 TCACAAGTGCCTTGACAGCA 60.107 50.000 18.22 0.00 43.42 4.41
1523 1628 4.201783 CGTAAACGTCATGAAGAAATCCCC 60.202 45.833 15.90 0.00 34.11 4.81
2358 2463 2.576832 GCCCAATGCAACAGCCAGT 61.577 57.895 0.00 0.00 40.77 4.00
2582 2687 4.696402 ACGTTCTACACCAAGTTGTTGAAA 59.304 37.500 7.48 0.00 41.04 2.69
2603 2709 1.268386 GGACATGCATGCTCATTCACG 60.268 52.381 26.53 0.00 0.00 4.35
2715 2821 6.690194 ACTTTTCTTTGGCTCTGCATATAG 57.310 37.500 0.00 0.00 0.00 1.31
2895 5608 2.551032 CGTGTAGACAGGACTGTGTGTA 59.449 50.000 10.08 0.00 45.05 2.90
2896 5609 1.337071 CGTGTAGACAGGACTGTGTGT 59.663 52.381 10.08 0.00 45.05 3.72
2897 5610 1.930817 GCGTGTAGACAGGACTGTGTG 60.931 57.143 10.08 0.00 45.05 3.82
2898 5611 0.314302 GCGTGTAGACAGGACTGTGT 59.686 55.000 10.08 8.56 45.05 3.72
2899 5612 0.388649 GGCGTGTAGACAGGACTGTG 60.389 60.000 10.08 0.00 45.05 3.66
2901 5614 0.388649 GTGGCGTGTAGACAGGACTG 60.389 60.000 9.45 0.00 39.56 3.51
2902 5615 1.533469 GGTGGCGTGTAGACAGGACT 61.533 60.000 9.45 0.00 39.56 3.85
2903 5616 1.080025 GGTGGCGTGTAGACAGGAC 60.080 63.158 6.55 3.92 39.56 3.85
2904 5617 0.902984 ATGGTGGCGTGTAGACAGGA 60.903 55.000 6.55 0.00 39.56 3.86
2905 5618 0.740868 CATGGTGGCGTGTAGACAGG 60.741 60.000 0.00 0.00 39.56 4.00
2906 5619 0.740868 CCATGGTGGCGTGTAGACAG 60.741 60.000 2.57 0.00 39.56 3.51
2907 5620 1.295101 CCATGGTGGCGTGTAGACA 59.705 57.895 2.57 0.00 33.74 3.41
2908 5621 1.449601 CCCATGGTGGCGTGTAGAC 60.450 63.158 11.73 0.00 35.79 2.59
2909 5622 2.986290 CCCATGGTGGCGTGTAGA 59.014 61.111 11.73 0.00 35.79 2.59
2910 5623 2.824041 GCCCATGGTGGCGTGTAG 60.824 66.667 11.73 0.00 42.54 2.74
3225 5976 3.607078 CGTTAAGTTCCTTCAGCAAGTGC 60.607 47.826 0.00 0.00 42.49 4.40
3357 6124 1.348064 AGCAGCACTAACTGGGTGTA 58.652 50.000 0.00 0.00 38.16 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.