Multiple sequence alignment - TraesCS1D01G234400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G234400 chr1D 100.000 2678 0 0 1 2678 323500313 323497636 0.000000e+00 4946.0
1 TraesCS1D01G234400 chr1D 93.127 2008 126 11 433 2434 322759646 322757645 0.000000e+00 2933.0
2 TraesCS1D01G234400 chr1D 92.629 2008 135 11 434 2434 322784382 322782381 0.000000e+00 2876.0
3 TraesCS1D01G234400 chr1D 92.135 2009 146 9 433 2436 322997125 322995124 0.000000e+00 2824.0
4 TraesCS1D01G234400 chr1D 91.629 2007 151 11 433 2436 322910490 322908498 0.000000e+00 2760.0
5 TraesCS1D01G234400 chr1D 94.432 1760 85 8 443 2194 323117089 323115335 0.000000e+00 2695.0
6 TraesCS1D01G234400 chr1D 93.961 1391 72 10 1052 2434 322927026 322925640 0.000000e+00 2093.0
7 TraesCS1D01G234400 chr1D 88.235 646 45 8 426 1067 322928475 322927857 0.000000e+00 743.0
8 TraesCS1D01G234400 chr1D 92.025 489 37 1 2192 2678 323107732 323107244 0.000000e+00 686.0
9 TraesCS1D01G234400 chr1D 92.208 462 34 2 1 461 323117588 323117128 0.000000e+00 652.0
10 TraesCS1D01G234400 chr1D 90.022 461 45 1 2 461 322784876 322784416 1.770000e-166 595.0
11 TraesCS1D01G234400 chr1D 89.805 461 44 3 2 461 322928935 322928477 2.970000e-164 588.0
12 TraesCS1D01G234400 chr1D 89.588 461 47 1 2 461 322760139 322759679 3.840000e-163 584.0
13 TraesCS1D01G234400 chr1D 88.995 418 43 3 2 418 322923192 322922777 5.110000e-142 514.0
14 TraesCS1D01G234400 chr1D 92.340 235 17 1 227 461 322997390 322997157 1.540000e-87 333.0
15 TraesCS1D01G234400 chr1D 83.810 105 15 2 1400 1503 325491093 325490990 6.100000e-17 99.0
16 TraesCS1D01G234400 chr1A 92.982 1482 95 6 858 2337 32801453 32799979 0.000000e+00 2152.0
17 TraesCS1D01G234400 chr1A 93.040 1092 68 7 433 1522 398893436 398892351 0.000000e+00 1589.0
18 TraesCS1D01G234400 chr1A 90.757 1017 66 7 433 1447 398859907 398858917 0.000000e+00 1332.0
19 TraesCS1D01G234400 chr1A 92.174 690 46 5 1652 2337 398843834 398843149 0.000000e+00 968.0
20 TraesCS1D01G234400 chr1A 93.213 221 13 1 2117 2335 398890448 398890228 9.250000e-85 324.0
21 TraesCS1D01G234400 chr1A 92.442 172 12 1 290 461 32823262 32823092 7.410000e-61 244.0
22 TraesCS1D01G234400 chr1A 93.571 140 8 1 1516 1655 398857347 398857209 9.720000e-50 207.0
23 TraesCS1D01G234400 chr1A 75.194 387 71 19 1406 1783 424393367 424393737 2.760000e-35 159.0
24 TraesCS1D01G234400 chr1A 91.509 106 9 0 356 461 398860043 398859938 2.150000e-31 147.0
25 TraesCS1D01G234400 chr1A 82.051 195 13 5 288 461 398893660 398893467 2.150000e-31 147.0
26 TraesCS1D01G234400 chr1A 91.111 90 7 1 288 377 398860131 398860043 1.300000e-23 121.0
27 TraesCS1D01G234400 chr1A 80.952 126 13 8 203 321 62208158 62208279 3.670000e-14 89.8
28 TraesCS1D01G234400 chr1B 87.154 615 62 12 620 1229 435369393 435368791 0.000000e+00 682.0
29 TraesCS1D01G234400 chr1B 80.165 121 22 2 202 321 276054996 276054877 3.670000e-14 89.8
30 TraesCS1D01G234400 chr2D 88.889 252 19 6 2436 2678 556022285 556022536 4.330000e-78 302.0
31 TraesCS1D01G234400 chr4B 85.366 246 27 5 2439 2678 483504917 483504675 2.060000e-61 246.0
32 TraesCS1D01G234400 chr6B 85.356 239 30 3 2441 2677 256441540 256441775 2.660000e-60 243.0
33 TraesCS1D01G234400 chr6B 84.064 251 24 11 2432 2673 632271870 632272113 7.460000e-56 228.0
34 TraesCS1D01G234400 chr3D 83.704 270 29 8 138 392 116332193 116332462 9.580000e-60 241.0
35 TraesCS1D01G234400 chr3D 90.625 96 9 0 35 130 116331579 116331674 7.780000e-26 128.0
36 TraesCS1D01G234400 chr3D 81.600 125 23 0 197 321 341514834 341514958 1.310000e-18 104.0
37 TraesCS1D01G234400 chr3D 88.608 79 7 2 383 461 584047333 584047409 7.890000e-16 95.3
38 TraesCS1D01G234400 chr5A 84.553 246 23 12 2440 2678 195633062 195632825 2.070000e-56 230.0
39 TraesCS1D01G234400 chr5A 82.443 262 28 14 2430 2678 642536224 642535968 2.090000e-51 213.0
40 TraesCS1D01G234400 chr2A 87.879 198 17 5 2439 2631 706509625 706509820 2.680000e-55 226.0
41 TraesCS1D01G234400 chr5D 82.857 245 29 12 2439 2678 87191293 87191057 9.720000e-50 207.0
42 TraesCS1D01G234400 chr3B 90.667 75 5 2 387 461 434984606 434984534 6.100000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G234400 chr1D 323497636 323500313 2677 True 4946.000000 4946 100.000000 1 2678 1 chr1D.!!$R3 2677
1 TraesCS1D01G234400 chr1D 322908498 322910490 1992 True 2760.000000 2760 91.629000 433 2436 1 chr1D.!!$R1 2003
2 TraesCS1D01G234400 chr1D 322757645 322760139 2494 True 1758.500000 2933 91.357500 2 2434 2 chr1D.!!$R5 2432
3 TraesCS1D01G234400 chr1D 322782381 322784876 2495 True 1735.500000 2876 91.325500 2 2434 2 chr1D.!!$R6 2432
4 TraesCS1D01G234400 chr1D 323115335 323117588 2253 True 1673.500000 2695 93.320000 1 2194 2 chr1D.!!$R9 2193
5 TraesCS1D01G234400 chr1D 322995124 322997390 2266 True 1578.500000 2824 92.237500 227 2436 2 chr1D.!!$R8 2209
6 TraesCS1D01G234400 chr1D 322922777 322928935 6158 True 984.500000 2093 90.249000 2 2434 4 chr1D.!!$R7 2432
7 TraesCS1D01G234400 chr1A 32799979 32801453 1474 True 2152.000000 2152 92.982000 858 2337 1 chr1A.!!$R1 1479
8 TraesCS1D01G234400 chr1A 398843149 398843834 685 True 968.000000 968 92.174000 1652 2337 1 chr1A.!!$R3 685
9 TraesCS1D01G234400 chr1A 398890228 398893660 3432 True 686.666667 1589 89.434667 288 2335 3 chr1A.!!$R5 2047
10 TraesCS1D01G234400 chr1A 398857209 398860131 2922 True 451.750000 1332 91.737000 288 1655 4 chr1A.!!$R4 1367
11 TraesCS1D01G234400 chr1B 435368791 435369393 602 True 682.000000 682 87.154000 620 1229 1 chr1B.!!$R2 609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
211 213 1.436195 GCATGCAAACGGCCGAGATA 61.436 55.0 35.9 14.24 43.89 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1832 4856 2.440627 CTGTCTCATTCCATGGATCCCA 59.559 50.0 17.06 0.0 38.19 4.37 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 115 4.547367 CAGCCCCGGTCGATTCCC 62.547 72.222 0.00 0.00 0.00 3.97
135 136 3.365265 GCCAACCTTGCCCACGAG 61.365 66.667 0.00 0.00 0.00 4.18
200 202 5.814188 TGTTGTCAATAGTTTTGCATGCAAA 59.186 32.000 35.80 35.80 43.23 3.68
211 213 1.436195 GCATGCAAACGGCCGAGATA 61.436 55.000 35.90 14.24 43.89 1.98
424 447 8.590204 TCATCCCATAATATAAGAGCGTGTTTA 58.410 33.333 0.00 0.00 0.00 2.01
493 578 6.388100 ACATACTCCCTCCATCCCATAATATG 59.612 42.308 0.00 0.00 0.00 1.78
494 579 3.525199 ACTCCCTCCATCCCATAATATGC 59.475 47.826 0.00 0.00 0.00 3.14
617 706 7.118680 AGACTAACACATTTGTTTATACACCGG 59.881 37.037 0.00 0.00 43.89 5.28
795 885 4.400120 TGCGTGGTTATTTTTAGGAGGTT 58.600 39.130 0.00 0.00 0.00 3.50
955 1048 1.926510 GAAACACACCAAAGCAGCAAC 59.073 47.619 0.00 0.00 0.00 4.17
985 1078 7.581011 AAATGGCAAAAATTGATACTCGAAC 57.419 32.000 0.00 0.00 0.00 3.95
1011 1104 4.525487 TCGCCCGTTCCTCTATATAAACAT 59.475 41.667 0.00 0.00 0.00 2.71
1109 2048 6.119536 ACAATTTCGTTATGGCTCTAATCCA 58.880 36.000 0.00 0.00 38.09 3.41
1117 2056 3.459232 TGGCTCTAATCCAGATCAACG 57.541 47.619 0.00 0.00 31.13 4.10
1155 2094 2.791383 TGGCACTTTTGATGGTTTCG 57.209 45.000 0.00 0.00 0.00 3.46
1256 2201 4.032558 CGCTTATTTTGGGACGAACTACTC 59.967 45.833 0.00 0.00 0.00 2.59
1281 2226 6.371548 CGACACTTATTTTGAGATGAAGGGAA 59.628 38.462 0.00 0.00 0.00 3.97
1630 4135 2.030363 CCGTAATGGTGCATGTTGTTGT 60.030 45.455 0.00 0.00 0.00 3.32
1656 4212 5.336744 CAAACGTTTGTAGAGCAGGAAAAA 58.663 37.500 28.72 0.00 33.59 1.94
1698 4722 5.449177 GGAAATAAAGATTCACTTGGGAGCG 60.449 44.000 0.00 0.00 38.98 5.03
1783 4807 0.034896 ACTCGAACCGCTTTCATGGT 59.965 50.000 0.00 0.00 41.20 3.55
1794 4818 7.164230 ACCGCTTTCATGGTTCATTTTATTA 57.836 32.000 0.00 0.00 33.81 0.98
1832 4856 5.424252 TCGGAACATTCTATTAACTGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
1965 4990 7.985184 ACCCAATAAAGAAAAGGAAAAACAGAC 59.015 33.333 0.00 0.00 0.00 3.51
2032 5220 7.365497 TCTGGCTAGTCAAATCAGATCAATA 57.635 36.000 0.00 0.00 30.58 1.90
2159 6082 1.529226 TTCGCCCATTTGAACGACAT 58.471 45.000 0.00 0.00 33.69 3.06
2163 6086 2.159393 CGCCCATTTGAACGACATCAAT 60.159 45.455 0.00 0.00 38.98 2.57
2188 6111 2.159043 TCATCTGGTTCTTCATCCTCGC 60.159 50.000 0.00 0.00 0.00 5.03
2323 6248 2.103771 CCTGCCAGCAGCTAAGAATCTA 59.896 50.000 14.26 0.00 44.23 1.98
2337 6262 6.128688 GCTAAGAATCTATCTCCATTTGCGAC 60.129 42.308 0.00 0.00 37.42 5.19
2339 6264 4.346418 AGAATCTATCTCCATTTGCGACCT 59.654 41.667 0.00 0.00 30.46 3.85
2436 6361 5.855925 CAGTTTCATAAACGCTGCATTTGTA 59.144 36.000 3.68 0.00 45.88 2.41
2437 6362 6.527722 CAGTTTCATAAACGCTGCATTTGTAT 59.472 34.615 3.68 0.00 45.88 2.29
2438 6363 6.747280 AGTTTCATAAACGCTGCATTTGTATC 59.253 34.615 3.68 0.00 45.88 2.24
2439 6364 4.832019 TCATAAACGCTGCATTTGTATCG 58.168 39.130 3.68 0.00 0.00 2.92
2441 6366 3.822594 AAACGCTGCATTTGTATCGAA 57.177 38.095 0.00 0.00 0.00 3.71
2442 6367 3.822594 AACGCTGCATTTGTATCGAAA 57.177 38.095 0.00 0.00 0.00 3.46
2443 6368 3.822594 ACGCTGCATTTGTATCGAAAA 57.177 38.095 0.00 0.00 0.00 2.29
2444 6369 4.153958 ACGCTGCATTTGTATCGAAAAA 57.846 36.364 0.00 0.00 0.00 1.94
2445 6370 4.158384 ACGCTGCATTTGTATCGAAAAAG 58.842 39.130 0.00 0.00 0.00 2.27
2446 6371 3.543494 CGCTGCATTTGTATCGAAAAAGG 59.457 43.478 0.00 0.00 0.00 3.11
2447 6372 3.304293 GCTGCATTTGTATCGAAAAAGGC 59.696 43.478 16.49 16.49 41.94 4.35
2448 6373 4.737054 CTGCATTTGTATCGAAAAAGGCT 58.263 39.130 20.98 0.00 42.06 4.58
2450 6375 5.537188 TGCATTTGTATCGAAAAAGGCTTT 58.463 33.333 20.98 6.68 42.06 3.51
2463 6388 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
2464 6389 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
2467 6392 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
2469 6394 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
2470 6395 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
2484 6409 1.904287 AATAAAGCAACCACCGAGCA 58.096 45.000 0.00 0.00 0.00 4.26
2485 6410 1.165270 ATAAAGCAACCACCGAGCAC 58.835 50.000 0.00 0.00 0.00 4.40
2486 6411 0.179043 TAAAGCAACCACCGAGCACA 60.179 50.000 0.00 0.00 0.00 4.57
2487 6412 1.034838 AAAGCAACCACCGAGCACAA 61.035 50.000 0.00 0.00 0.00 3.33
2488 6413 1.034838 AAGCAACCACCGAGCACAAA 61.035 50.000 0.00 0.00 0.00 2.83
2489 6414 1.008538 GCAACCACCGAGCACAAAG 60.009 57.895 0.00 0.00 0.00 2.77
2490 6415 1.724582 GCAACCACCGAGCACAAAGT 61.725 55.000 0.00 0.00 0.00 2.66
2491 6416 0.738389 CAACCACCGAGCACAAAGTT 59.262 50.000 0.00 0.00 0.00 2.66
2493 6418 0.107410 ACCACCGAGCACAAAGTTCA 60.107 50.000 0.00 0.00 0.00 3.18
2495 6420 1.013596 CACCGAGCACAAAGTTCACA 58.986 50.000 0.00 0.00 0.00 3.58
2496 6421 1.400142 CACCGAGCACAAAGTTCACAA 59.600 47.619 0.00 0.00 0.00 3.33
2497 6422 2.088423 ACCGAGCACAAAGTTCACAAA 58.912 42.857 0.00 0.00 0.00 2.83
2498 6423 2.097466 ACCGAGCACAAAGTTCACAAAG 59.903 45.455 0.00 0.00 0.00 2.77
2500 6425 3.311322 CCGAGCACAAAGTTCACAAAGTA 59.689 43.478 0.00 0.00 0.00 2.24
2501 6426 4.271687 CGAGCACAAAGTTCACAAAGTAC 58.728 43.478 0.00 0.00 0.00 2.73
2502 6427 4.598062 GAGCACAAAGTTCACAAAGTACC 58.402 43.478 0.00 0.00 0.00 3.34
2503 6428 4.013728 AGCACAAAGTTCACAAAGTACCA 58.986 39.130 0.00 0.00 0.00 3.25
2505 6430 4.976116 GCACAAAGTTCACAAAGTACCATC 59.024 41.667 0.00 0.00 0.00 3.51
2506 6431 5.519722 CACAAAGTTCACAAAGTACCATCC 58.480 41.667 0.00 0.00 0.00 3.51
2507 6432 5.067153 CACAAAGTTCACAAAGTACCATCCA 59.933 40.000 0.00 0.00 0.00 3.41
2508 6433 5.833131 ACAAAGTTCACAAAGTACCATCCAT 59.167 36.000 0.00 0.00 0.00 3.41
2509 6434 5.964958 AAGTTCACAAAGTACCATCCATG 57.035 39.130 0.00 0.00 0.00 3.66
2511 6436 5.630121 AGTTCACAAAGTACCATCCATGAA 58.370 37.500 0.00 0.00 0.00 2.57
2512 6437 5.473504 AGTTCACAAAGTACCATCCATGAAC 59.526 40.000 13.36 13.36 43.11 3.18
2513 6438 4.979335 TCACAAAGTACCATCCATGAACA 58.021 39.130 0.00 0.00 0.00 3.18
2514 6439 4.759693 TCACAAAGTACCATCCATGAACAC 59.240 41.667 0.00 0.00 0.00 3.32
2515 6440 4.518590 CACAAAGTACCATCCATGAACACA 59.481 41.667 0.00 0.00 0.00 3.72
2516 6441 4.518970 ACAAAGTACCATCCATGAACACAC 59.481 41.667 0.00 0.00 0.00 3.82
2517 6442 4.365514 AAGTACCATCCATGAACACACA 57.634 40.909 0.00 0.00 0.00 3.72
2521 6446 1.541147 CCATCCATGAACACACACACC 59.459 52.381 0.00 0.00 0.00 4.16
2523 6448 1.163420 TCCATGAACACACACACCGC 61.163 55.000 0.00 0.00 0.00 5.68
2524 6449 1.282570 CATGAACACACACACCGCC 59.717 57.895 0.00 0.00 0.00 6.13
2525 6450 1.153066 ATGAACACACACACCGCCA 60.153 52.632 0.00 0.00 0.00 5.69
2526 6451 1.444119 ATGAACACACACACCGCCAC 61.444 55.000 0.00 0.00 0.00 5.01
2527 6452 2.826738 AACACACACACCGCCACC 60.827 61.111 0.00 0.00 0.00 4.61
2543 6468 3.876300 CCGCAGGCAGTGTCTAAC 58.124 61.111 0.00 0.00 46.14 2.34
2544 6469 1.005037 CCGCAGGCAGTGTCTAACA 60.005 57.895 0.00 0.00 46.14 2.41
2546 6471 0.038251 CGCAGGCAGTGTCTAACAGA 60.038 55.000 0.00 0.00 0.00 3.41
2547 6472 1.433534 GCAGGCAGTGTCTAACAGAC 58.566 55.000 0.00 0.00 45.26 3.51
2557 6482 3.861569 GTCTAACAGACAAGCACACAC 57.138 47.619 1.46 0.00 44.45 3.82
2560 6485 1.819928 AACAGACAAGCACACACACA 58.180 45.000 0.00 0.00 0.00 3.72
2561 6486 1.819928 ACAGACAAGCACACACACAA 58.180 45.000 0.00 0.00 0.00 3.33
2562 6487 1.468520 ACAGACAAGCACACACACAAC 59.531 47.619 0.00 0.00 0.00 3.32
2563 6488 1.468127 CAGACAAGCACACACACAACA 59.532 47.619 0.00 0.00 0.00 3.33
2564 6489 2.095314 CAGACAAGCACACACACAACAA 60.095 45.455 0.00 0.00 0.00 2.83
2565 6490 2.556189 AGACAAGCACACACACAACAAA 59.444 40.909 0.00 0.00 0.00 2.83
2566 6491 2.916716 GACAAGCACACACACAACAAAG 59.083 45.455 0.00 0.00 0.00 2.77
2567 6492 2.261345 CAAGCACACACACAACAAAGG 58.739 47.619 0.00 0.00 0.00 3.11
2568 6493 1.832883 AGCACACACACAACAAAGGA 58.167 45.000 0.00 0.00 0.00 3.36
2569 6494 1.745087 AGCACACACACAACAAAGGAG 59.255 47.619 0.00 0.00 0.00 3.69
2571 6496 2.094752 GCACACACACAACAAAGGAGTT 60.095 45.455 0.00 0.00 0.00 3.01
2572 6497 3.758300 CACACACACAACAAAGGAGTTC 58.242 45.455 0.00 0.00 0.00 3.01
2573 6498 3.190327 CACACACACAACAAAGGAGTTCA 59.810 43.478 0.00 0.00 0.00 3.18
2574 6499 3.440173 ACACACACAACAAAGGAGTTCAG 59.560 43.478 0.00 0.00 0.00 3.02
2575 6500 2.423538 ACACACAACAAAGGAGTTCAGC 59.576 45.455 0.00 0.00 0.00 4.26
2576 6501 2.684881 CACACAACAAAGGAGTTCAGCT 59.315 45.455 0.00 0.00 0.00 4.24
2577 6502 2.684881 ACACAACAAAGGAGTTCAGCTG 59.315 45.455 7.63 7.63 0.00 4.24
2579 6504 2.684881 ACAACAAAGGAGTTCAGCTGTG 59.315 45.455 14.67 4.30 0.00 3.66
2580 6505 1.972872 ACAAAGGAGTTCAGCTGTGG 58.027 50.000 14.67 0.00 0.00 4.17
2582 6507 0.538287 AAAGGAGTTCAGCTGTGGGC 60.538 55.000 14.67 2.31 42.19 5.36
2583 6508 1.708993 AAGGAGTTCAGCTGTGGGCA 61.709 55.000 14.67 0.00 44.79 5.36
2584 6509 1.968540 GGAGTTCAGCTGTGGGCAC 60.969 63.158 14.67 4.31 44.79 5.01
2585 6510 1.227943 GAGTTCAGCTGTGGGCACA 60.228 57.895 14.67 0.00 44.79 4.57
2592 6517 2.723746 CTGTGGGCACAGCACAAC 59.276 61.111 0.00 0.00 46.28 3.32
2593 6518 2.044551 TGTGGGCACAGCACAACA 60.045 55.556 0.00 0.00 46.28 3.33
2594 6519 1.665264 CTGTGGGCACAGCACAACAA 61.665 55.000 0.00 0.00 46.28 2.83
2595 6520 1.066257 GTGGGCACAGCACAACAAG 59.934 57.895 0.00 0.00 46.28 3.16
2596 6521 2.028043 GGGCACAGCACAACAAGC 59.972 61.111 0.00 0.00 0.00 4.01
2597 6522 2.028043 GGCACAGCACAACAAGCC 59.972 61.111 0.00 0.00 34.71 4.35
2598 6523 2.028043 GCACAGCACAACAAGCCC 59.972 61.111 0.00 0.00 0.00 5.19
2599 6524 2.784356 GCACAGCACAACAAGCCCA 61.784 57.895 0.00 0.00 0.00 5.36
2600 6525 1.815196 CACAGCACAACAAGCCCAA 59.185 52.632 0.00 0.00 0.00 4.12
2602 6527 0.969917 ACAGCACAACAAGCCCAACA 60.970 50.000 0.00 0.00 0.00 3.33
2603 6528 0.528249 CAGCACAACAAGCCCAACAC 60.528 55.000 0.00 0.00 0.00 3.32
2604 6529 0.969917 AGCACAACAAGCCCAACACA 60.970 50.000 0.00 0.00 0.00 3.72
2605 6530 0.528249 GCACAACAAGCCCAACACAG 60.528 55.000 0.00 0.00 0.00 3.66
2606 6531 1.102154 CACAACAAGCCCAACACAGA 58.898 50.000 0.00 0.00 0.00 3.41
2608 6533 1.064758 ACAACAAGCCCAACACAGAGA 60.065 47.619 0.00 0.00 0.00 3.10
2611 6536 0.947244 CAAGCCCAACACAGAGACAC 59.053 55.000 0.00 0.00 0.00 3.67
2614 6539 0.463654 GCCCAACACAGAGACACACA 60.464 55.000 0.00 0.00 0.00 3.72
2616 6541 1.942657 CCCAACACAGAGACACACAAG 59.057 52.381 0.00 0.00 0.00 3.16
2619 6544 1.656652 ACACAGAGACACACAAGCAC 58.343 50.000 0.00 0.00 0.00 4.40
2620 6545 0.578683 CACAGAGACACACAAGCACG 59.421 55.000 0.00 0.00 0.00 5.34
2621 6546 1.154205 ACAGAGACACACAAGCACGC 61.154 55.000 0.00 0.00 0.00 5.34
2622 6547 1.143838 AGAGACACACAAGCACGCA 59.856 52.632 0.00 0.00 0.00 5.24
2624 6549 1.428370 GAGACACACAAGCACGCACA 61.428 55.000 0.00 0.00 0.00 4.57
2627 6552 1.136356 CACACAAGCACGCACAACA 59.864 52.632 0.00 0.00 0.00 3.33
2628 6553 1.133363 CACACAAGCACGCACAACAC 61.133 55.000 0.00 0.00 0.00 3.32
2629 6554 1.136356 CACAAGCACGCACAACACA 59.864 52.632 0.00 0.00 0.00 3.72
2630 6555 0.455802 CACAAGCACGCACAACACAA 60.456 50.000 0.00 0.00 0.00 3.33
2631 6556 0.242286 ACAAGCACGCACAACACAAA 59.758 45.000 0.00 0.00 0.00 2.83
2632 6557 1.135141 ACAAGCACGCACAACACAAAT 60.135 42.857 0.00 0.00 0.00 2.32
2633 6558 1.255859 CAAGCACGCACAACACAAATG 59.744 47.619 0.00 0.00 0.00 2.32
2634 6559 0.248990 AGCACGCACAACACAAATGG 60.249 50.000 0.00 0.00 0.00 3.16
2635 6560 0.527385 GCACGCACAACACAAATGGT 60.527 50.000 0.00 0.00 0.00 3.55
2644 6569 3.177883 CACAAATGGTGGCGTCAAC 57.822 52.632 0.00 0.00 44.04 3.18
2645 6570 0.660005 CACAAATGGTGGCGTCAACG 60.660 55.000 0.00 0.00 44.04 4.10
2646 6571 0.816018 ACAAATGGTGGCGTCAACGA 60.816 50.000 0.00 0.00 43.02 3.85
2657 6582 3.296836 TCAACGACGCGGGGAAGA 61.297 61.111 12.47 0.00 0.00 2.87
2658 6583 2.125673 CAACGACGCGGGGAAGAT 60.126 61.111 12.47 0.00 0.00 2.40
2659 6584 2.165301 CAACGACGCGGGGAAGATC 61.165 63.158 12.47 0.00 0.00 2.75
2660 6585 2.348888 AACGACGCGGGGAAGATCT 61.349 57.895 12.47 0.00 0.00 2.75
2661 6586 1.033746 AACGACGCGGGGAAGATCTA 61.034 55.000 12.47 0.00 0.00 1.98
2662 6587 1.033746 ACGACGCGGGGAAGATCTAA 61.034 55.000 12.47 0.00 0.00 2.10
2663 6588 0.314302 CGACGCGGGGAAGATCTAAT 59.686 55.000 12.47 0.00 0.00 1.73
2664 6589 1.666311 CGACGCGGGGAAGATCTAATC 60.666 57.143 12.47 0.00 0.00 1.75
2665 6590 0.680061 ACGCGGGGAAGATCTAATCC 59.320 55.000 12.47 5.02 34.85 3.01
2667 6592 0.037232 GCGGGGAAGATCTAATCCGG 60.037 60.000 23.09 16.81 38.12 5.14
2671 6596 1.276705 GGGAAGATCTAATCCGGCTCC 59.723 57.143 7.26 2.81 36.54 4.70
2672 6597 1.067495 GGAAGATCTAATCCGGCTCCG 60.067 57.143 0.00 0.48 39.44 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.009335 CGTCACGTTGAGGTCGACA 60.009 57.895 18.91 0.00 0.00 4.35
70 71 2.882876 CATCCCGTCGGACGAGTT 59.117 61.111 30.33 10.93 46.05 3.01
135 136 1.432270 GCCATAGTTCACGCCAGCTC 61.432 60.000 0.00 0.00 0.00 4.09
200 202 2.406401 CGAACGTATCTCGGCCGT 59.594 61.111 27.15 8.80 44.69 5.68
596 684 6.660094 ATACCCGGTGTATAAACAAATGTGTT 59.340 34.615 12.31 0.00 39.97 3.32
832 924 5.527582 CCGACTACAAAAATATCCAGAAGGG 59.472 44.000 0.00 0.00 34.83 3.95
982 1075 0.391263 AGAGGAACGGGCGATTGTTC 60.391 55.000 5.77 5.77 42.87 3.18
985 1078 3.594603 ATATAGAGGAACGGGCGATTG 57.405 47.619 0.00 0.00 0.00 2.67
996 1089 8.871125 GGTTCCTTCTGATGTTTATATAGAGGA 58.129 37.037 0.00 0.00 0.00 3.71
1109 2048 2.545526 CACAGAACACTTGCGTTGATCT 59.454 45.455 0.00 0.00 0.00 2.75
1117 2056 2.606308 CCATCAAGCACAGAACACTTGC 60.606 50.000 0.00 0.00 40.45 4.01
1256 2201 5.874810 TCCCTTCATCTCAAAATAAGTGTCG 59.125 40.000 0.00 0.00 0.00 4.35
1630 4135 2.875933 CCTGCTCTACAAACGTTTGGAA 59.124 45.455 36.52 25.50 42.34 3.53
1656 4212 6.983906 ATTTCCAAACTTCATTCTTGGTCT 57.016 33.333 0.35 0.00 40.47 3.85
1794 4818 3.503365 TGTTCCGAATATATCCGGGTCT 58.497 45.455 10.79 0.00 45.36 3.85
1832 4856 2.440627 CTGTCTCATTCCATGGATCCCA 59.559 50.000 17.06 0.00 38.19 4.37
1934 4959 9.740710 TTTTTCCTTTTCTTTATTGGGTTTTGA 57.259 25.926 0.00 0.00 0.00 2.69
1965 4990 4.191544 TCTAATTTGACTGGCCAGATTCG 58.808 43.478 39.19 21.82 0.00 3.34
2159 6082 6.600822 GGATGAAGAACCAGATGAAAGATTGA 59.399 38.462 0.00 0.00 0.00 2.57
2163 6086 5.625426 CGAGGATGAAGAACCAGATGAAAGA 60.625 44.000 0.00 0.00 0.00 2.52
2188 6111 6.873605 TCCAAATGTGACACAAGTCTATAGTG 59.126 38.462 13.23 0.00 45.20 2.74
2249 6174 1.055849 TCATGCCATACTGCGGGTAT 58.944 50.000 0.00 0.00 41.38 2.73
2315 6240 5.059833 GGTCGCAAATGGAGATAGATTCTT 58.940 41.667 0.00 0.00 33.74 2.52
2323 6248 0.254178 AGCAGGTCGCAAATGGAGAT 59.746 50.000 0.00 0.00 46.13 2.75
2337 6262 1.605710 GCACATGGCACTATTAGCAGG 59.394 52.381 0.00 0.00 43.97 4.85
2339 6264 1.064832 TGGCACATGGCACTATTAGCA 60.065 47.619 3.65 0.00 46.12 3.49
2417 6342 4.568760 TCGATACAAATGCAGCGTTTATGA 59.431 37.500 12.38 4.04 0.00 2.15
2447 6372 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
2448 6373 5.823353 CTTTATTTATAAAGCGGGGCGAAA 58.177 37.500 8.78 0.00 41.69 3.46
2459 6384 6.151312 TGCTCGGTGGTTGCTTTATTTATAAA 59.849 34.615 0.00 0.00 0.00 1.40
2460 6385 5.648526 TGCTCGGTGGTTGCTTTATTTATAA 59.351 36.000 0.00 0.00 0.00 0.98
2461 6386 5.065474 GTGCTCGGTGGTTGCTTTATTTATA 59.935 40.000 0.00 0.00 0.00 0.98
2462 6387 4.013728 TGCTCGGTGGTTGCTTTATTTAT 58.986 39.130 0.00 0.00 0.00 1.40
2463 6388 3.189702 GTGCTCGGTGGTTGCTTTATTTA 59.810 43.478 0.00 0.00 0.00 1.40
2464 6389 2.030274 GTGCTCGGTGGTTGCTTTATTT 60.030 45.455 0.00 0.00 0.00 1.40
2467 6392 0.179043 TGTGCTCGGTGGTTGCTTTA 60.179 50.000 0.00 0.00 0.00 1.85
2469 6394 1.034838 TTTGTGCTCGGTGGTTGCTT 61.035 50.000 0.00 0.00 0.00 3.91
2470 6395 1.447317 CTTTGTGCTCGGTGGTTGCT 61.447 55.000 0.00 0.00 0.00 3.91
2471 6396 1.008538 CTTTGTGCTCGGTGGTTGC 60.009 57.895 0.00 0.00 0.00 4.17
2474 6399 0.107410 TGAACTTTGTGCTCGGTGGT 60.107 50.000 0.00 0.00 0.00 4.16
2476 6401 1.013596 TGTGAACTTTGTGCTCGGTG 58.986 50.000 0.00 0.00 0.00 4.94
2477 6402 1.745232 TTGTGAACTTTGTGCTCGGT 58.255 45.000 0.00 0.00 0.00 4.69
2479 6404 3.405170 ACTTTGTGAACTTTGTGCTCG 57.595 42.857 0.00 0.00 0.00 5.03
2480 6405 4.095782 TGGTACTTTGTGAACTTTGTGCTC 59.904 41.667 0.00 0.00 0.00 4.26
2481 6406 4.013728 TGGTACTTTGTGAACTTTGTGCT 58.986 39.130 0.00 0.00 0.00 4.40
2482 6407 4.364415 TGGTACTTTGTGAACTTTGTGC 57.636 40.909 0.00 0.00 0.00 4.57
2484 6409 5.197451 TGGATGGTACTTTGTGAACTTTGT 58.803 37.500 0.00 0.00 0.00 2.83
2485 6410 5.766150 TGGATGGTACTTTGTGAACTTTG 57.234 39.130 0.00 0.00 0.00 2.77
2486 6411 6.068010 TCATGGATGGTACTTTGTGAACTTT 58.932 36.000 0.00 0.00 0.00 2.66
2487 6412 5.630121 TCATGGATGGTACTTTGTGAACTT 58.370 37.500 0.00 0.00 0.00 2.66
2488 6413 5.241403 TCATGGATGGTACTTTGTGAACT 57.759 39.130 0.00 0.00 0.00 3.01
2489 6414 5.240623 TGTTCATGGATGGTACTTTGTGAAC 59.759 40.000 15.62 15.62 42.55 3.18
2490 6415 5.240623 GTGTTCATGGATGGTACTTTGTGAA 59.759 40.000 0.00 0.00 0.00 3.18
2491 6416 4.759693 GTGTTCATGGATGGTACTTTGTGA 59.240 41.667 0.00 0.00 0.00 3.58
2493 6418 4.518970 GTGTGTTCATGGATGGTACTTTGT 59.481 41.667 0.00 0.00 0.00 2.83
2495 6420 4.518970 GTGTGTGTTCATGGATGGTACTTT 59.481 41.667 0.00 0.00 0.00 2.66
2496 6421 4.072131 GTGTGTGTTCATGGATGGTACTT 58.928 43.478 0.00 0.00 0.00 2.24
2497 6422 3.072330 TGTGTGTGTTCATGGATGGTACT 59.928 43.478 0.00 0.00 0.00 2.73
2498 6423 3.188460 GTGTGTGTGTTCATGGATGGTAC 59.812 47.826 0.00 0.00 0.00 3.34
2500 6425 2.229792 GTGTGTGTGTTCATGGATGGT 58.770 47.619 0.00 0.00 0.00 3.55
2501 6426 1.541147 GGTGTGTGTGTTCATGGATGG 59.459 52.381 0.00 0.00 0.00 3.51
2502 6427 1.197492 CGGTGTGTGTGTTCATGGATG 59.803 52.381 0.00 0.00 0.00 3.51
2503 6428 1.522668 CGGTGTGTGTGTTCATGGAT 58.477 50.000 0.00 0.00 0.00 3.41
2505 6430 1.282570 GCGGTGTGTGTGTTCATGG 59.717 57.895 0.00 0.00 0.00 3.66
2506 6431 1.282570 GGCGGTGTGTGTGTTCATG 59.717 57.895 0.00 0.00 0.00 3.07
2507 6432 1.153066 TGGCGGTGTGTGTGTTCAT 60.153 52.632 0.00 0.00 0.00 2.57
2508 6433 2.109739 GTGGCGGTGTGTGTGTTCA 61.110 57.895 0.00 0.00 0.00 3.18
2509 6434 2.713154 GTGGCGGTGTGTGTGTTC 59.287 61.111 0.00 0.00 0.00 3.18
2525 6450 1.004918 GTTAGACACTGCCTGCGGT 60.005 57.895 0.00 0.00 35.66 5.68
2526 6451 1.005037 TGTTAGACACTGCCTGCGG 60.005 57.895 0.00 0.00 0.00 5.69
2527 6452 0.038251 TCTGTTAGACACTGCCTGCG 60.038 55.000 0.00 0.00 0.00 5.18
2528 6453 1.433534 GTCTGTTAGACACTGCCTGC 58.566 55.000 4.20 0.00 44.45 4.85
2538 6463 3.194861 GTGTGTGTGCTTGTCTGTTAGA 58.805 45.455 0.00 0.00 0.00 2.10
2539 6464 2.935849 TGTGTGTGTGCTTGTCTGTTAG 59.064 45.455 0.00 0.00 0.00 2.34
2540 6465 2.979240 TGTGTGTGTGCTTGTCTGTTA 58.021 42.857 0.00 0.00 0.00 2.41
2541 6466 1.819928 TGTGTGTGTGCTTGTCTGTT 58.180 45.000 0.00 0.00 0.00 3.16
2542 6467 1.468520 GTTGTGTGTGTGCTTGTCTGT 59.531 47.619 0.00 0.00 0.00 3.41
2543 6468 1.468127 TGTTGTGTGTGTGCTTGTCTG 59.532 47.619 0.00 0.00 0.00 3.51
2544 6469 1.819928 TGTTGTGTGTGTGCTTGTCT 58.180 45.000 0.00 0.00 0.00 3.41
2546 6471 2.352617 CCTTTGTTGTGTGTGTGCTTGT 60.353 45.455 0.00 0.00 0.00 3.16
2547 6472 2.094803 TCCTTTGTTGTGTGTGTGCTTG 60.095 45.455 0.00 0.00 0.00 4.01
2548 6473 2.164219 CTCCTTTGTTGTGTGTGTGCTT 59.836 45.455 0.00 0.00 0.00 3.91
2549 6474 1.745087 CTCCTTTGTTGTGTGTGTGCT 59.255 47.619 0.00 0.00 0.00 4.40
2550 6475 1.472480 ACTCCTTTGTTGTGTGTGTGC 59.528 47.619 0.00 0.00 0.00 4.57
2551 6476 3.190327 TGAACTCCTTTGTTGTGTGTGTG 59.810 43.478 0.00 0.00 0.00 3.82
2552 6477 3.417101 TGAACTCCTTTGTTGTGTGTGT 58.583 40.909 0.00 0.00 0.00 3.72
2553 6478 3.731867 GCTGAACTCCTTTGTTGTGTGTG 60.732 47.826 0.00 0.00 0.00 3.82
2554 6479 2.423538 GCTGAACTCCTTTGTTGTGTGT 59.576 45.455 0.00 0.00 0.00 3.72
2555 6480 2.684881 AGCTGAACTCCTTTGTTGTGTG 59.315 45.455 0.00 0.00 0.00 3.82
2556 6481 2.684881 CAGCTGAACTCCTTTGTTGTGT 59.315 45.455 8.42 0.00 0.00 3.72
2557 6482 2.684881 ACAGCTGAACTCCTTTGTTGTG 59.315 45.455 23.35 0.00 0.00 3.33
2560 6485 2.301346 CCACAGCTGAACTCCTTTGTT 58.699 47.619 23.35 0.00 0.00 2.83
2561 6486 1.477558 CCCACAGCTGAACTCCTTTGT 60.478 52.381 23.35 0.00 0.00 2.83
2562 6487 1.242076 CCCACAGCTGAACTCCTTTG 58.758 55.000 23.35 5.12 0.00 2.77
2563 6488 0.538287 GCCCACAGCTGAACTCCTTT 60.538 55.000 23.35 0.00 38.99 3.11
2564 6489 1.073897 GCCCACAGCTGAACTCCTT 59.926 57.895 23.35 0.00 38.99 3.36
2565 6490 2.149383 TGCCCACAGCTGAACTCCT 61.149 57.895 23.35 0.00 44.23 3.69
2566 6491 1.968540 GTGCCCACAGCTGAACTCC 60.969 63.158 23.35 5.00 44.23 3.85
2567 6492 1.227943 TGTGCCCACAGCTGAACTC 60.228 57.895 23.35 7.26 44.23 3.01
2568 6493 2.918248 TGTGCCCACAGCTGAACT 59.082 55.556 23.35 0.00 44.23 3.01
2576 6501 1.665264 CTTGTTGTGCTGTGCCCACA 61.665 55.000 0.71 0.71 41.11 4.17
2577 6502 1.066257 CTTGTTGTGCTGTGCCCAC 59.934 57.895 0.00 0.00 0.00 4.61
2579 6504 2.028043 GCTTGTTGTGCTGTGCCC 59.972 61.111 0.00 0.00 0.00 5.36
2580 6505 2.028043 GGCTTGTTGTGCTGTGCC 59.972 61.111 0.00 0.00 0.00 5.01
2582 6507 0.528249 GTTGGGCTTGTTGTGCTGTG 60.528 55.000 0.00 0.00 0.00 3.66
2583 6508 0.969917 TGTTGGGCTTGTTGTGCTGT 60.970 50.000 0.00 0.00 0.00 4.40
2584 6509 0.528249 GTGTTGGGCTTGTTGTGCTG 60.528 55.000 0.00 0.00 0.00 4.41
2585 6510 0.969917 TGTGTTGGGCTTGTTGTGCT 60.970 50.000 0.00 0.00 0.00 4.40
2586 6511 0.528249 CTGTGTTGGGCTTGTTGTGC 60.528 55.000 0.00 0.00 0.00 4.57
2589 6514 1.334869 GTCTCTGTGTTGGGCTTGTTG 59.665 52.381 0.00 0.00 0.00 3.33
2590 6515 1.064758 TGTCTCTGTGTTGGGCTTGTT 60.065 47.619 0.00 0.00 0.00 2.83
2591 6516 0.546122 TGTCTCTGTGTTGGGCTTGT 59.454 50.000 0.00 0.00 0.00 3.16
2592 6517 0.947244 GTGTCTCTGTGTTGGGCTTG 59.053 55.000 0.00 0.00 0.00 4.01
2593 6518 0.546122 TGTGTCTCTGTGTTGGGCTT 59.454 50.000 0.00 0.00 0.00 4.35
2594 6519 0.179045 GTGTGTCTCTGTGTTGGGCT 60.179 55.000 0.00 0.00 0.00 5.19
2595 6520 0.463654 TGTGTGTCTCTGTGTTGGGC 60.464 55.000 0.00 0.00 0.00 5.36
2596 6521 1.942657 CTTGTGTGTCTCTGTGTTGGG 59.057 52.381 0.00 0.00 0.00 4.12
2597 6522 1.331756 GCTTGTGTGTCTCTGTGTTGG 59.668 52.381 0.00 0.00 0.00 3.77
2598 6523 2.009051 TGCTTGTGTGTCTCTGTGTTG 58.991 47.619 0.00 0.00 0.00 3.33
2599 6524 2.009774 GTGCTTGTGTGTCTCTGTGTT 58.990 47.619 0.00 0.00 0.00 3.32
2600 6525 1.656652 GTGCTTGTGTGTCTCTGTGT 58.343 50.000 0.00 0.00 0.00 3.72
2602 6527 1.154205 GCGTGCTTGTGTGTCTCTGT 61.154 55.000 0.00 0.00 0.00 3.41
2603 6528 1.153597 TGCGTGCTTGTGTGTCTCTG 61.154 55.000 0.00 0.00 0.00 3.35
2604 6529 1.143838 TGCGTGCTTGTGTGTCTCT 59.856 52.632 0.00 0.00 0.00 3.10
2605 6530 1.276844 GTGCGTGCTTGTGTGTCTC 59.723 57.895 0.00 0.00 0.00 3.36
2606 6531 1.024046 TTGTGCGTGCTTGTGTGTCT 61.024 50.000 0.00 0.00 0.00 3.41
2608 6533 1.136565 GTTGTGCGTGCTTGTGTGT 59.863 52.632 0.00 0.00 0.00 3.72
2611 6536 0.455802 TTGTGTTGTGCGTGCTTGTG 60.456 50.000 0.00 0.00 0.00 3.33
2614 6539 1.558741 CATTTGTGTTGTGCGTGCTT 58.441 45.000 0.00 0.00 0.00 3.91
2616 6541 0.527385 ACCATTTGTGTTGTGCGTGC 60.527 50.000 0.00 0.00 0.00 5.34
2619 6544 1.214373 GCCACCATTTGTGTTGTGCG 61.214 55.000 0.00 0.00 43.85 5.34
2620 6545 1.214373 CGCCACCATTTGTGTTGTGC 61.214 55.000 0.00 0.00 43.85 4.57
2621 6546 0.102120 ACGCCACCATTTGTGTTGTG 59.898 50.000 0.00 0.00 43.85 3.33
2622 6547 0.383949 GACGCCACCATTTGTGTTGT 59.616 50.000 0.00 0.00 43.85 3.32
2624 6549 1.107114 TTGACGCCACCATTTGTGTT 58.893 45.000 0.00 0.00 43.85 3.32
2627 6552 0.816018 TCGTTGACGCCACCATTTGT 60.816 50.000 0.00 0.00 39.60 2.83
2628 6553 0.385473 GTCGTTGACGCCACCATTTG 60.385 55.000 0.00 0.00 39.60 2.32
2629 6554 1.946267 GTCGTTGACGCCACCATTT 59.054 52.632 0.00 0.00 39.60 2.32
2630 6555 3.650369 GTCGTTGACGCCACCATT 58.350 55.556 0.00 0.00 39.60 3.16
2639 6564 2.830704 ATCTTCCCCGCGTCGTTGAC 62.831 60.000 4.92 0.00 0.00 3.18
2640 6565 2.552585 GATCTTCCCCGCGTCGTTGA 62.553 60.000 4.92 0.00 0.00 3.18
2641 6566 2.125673 ATCTTCCCCGCGTCGTTG 60.126 61.111 4.92 0.00 0.00 4.10
2642 6567 1.033746 TAGATCTTCCCCGCGTCGTT 61.034 55.000 4.92 0.00 0.00 3.85
2643 6568 1.033746 TTAGATCTTCCCCGCGTCGT 61.034 55.000 4.92 0.00 0.00 4.34
2644 6569 0.314302 ATTAGATCTTCCCCGCGTCG 59.686 55.000 4.92 0.00 0.00 5.12
2645 6570 1.336980 GGATTAGATCTTCCCCGCGTC 60.337 57.143 4.92 0.00 0.00 5.19
2646 6571 0.680061 GGATTAGATCTTCCCCGCGT 59.320 55.000 4.92 0.00 0.00 6.01
2647 6572 0.388649 CGGATTAGATCTTCCCCGCG 60.389 60.000 0.00 0.00 0.00 6.46
2648 6573 0.037232 CCGGATTAGATCTTCCCCGC 60.037 60.000 18.25 0.00 36.01 6.13
2649 6574 0.037232 GCCGGATTAGATCTTCCCCG 60.037 60.000 5.05 17.27 36.98 5.73
2650 6575 1.276705 GAGCCGGATTAGATCTTCCCC 59.723 57.143 5.05 0.00 0.00 4.81
2651 6576 1.276705 GGAGCCGGATTAGATCTTCCC 59.723 57.143 5.05 0.00 0.00 3.97
2652 6577 1.067495 CGGAGCCGGATTAGATCTTCC 60.067 57.143 5.05 1.29 35.56 3.46
2653 6578 2.355717 CGGAGCCGGATTAGATCTTC 57.644 55.000 5.05 0.00 35.56 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.