Multiple sequence alignment - TraesCS1D01G234000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G234000 chr1D 100.000 3467 0 0 1 3467 322280826 322277360 0.000000e+00 6403.0
1 TraesCS1D01G234000 chr1B 94.168 2675 109 19 802 3465 435163314 435160676 0.000000e+00 4032.0
2 TraesCS1D01G234000 chr1B 93.321 539 28 2 269 802 435175575 435175040 0.000000e+00 789.0
3 TraesCS1D01G234000 chr1B 96.377 276 10 0 1 276 435188907 435188632 4.080000e-124 455.0
4 TraesCS1D01G234000 chr1B 96.970 33 1 0 542 574 435175511 435175543 4.830000e-04 56.5
5 TraesCS1D01G234000 chr1A 90.453 1456 65 16 868 2271 406176474 406175041 0.000000e+00 1851.0
6 TraesCS1D01G234000 chr1A 92.477 1090 60 12 2295 3382 406174762 406173693 0.000000e+00 1539.0
7 TraesCS1D01G234000 chr1A 92.096 291 12 3 578 868 406176785 406176506 1.940000e-107 399.0
8 TraesCS1D01G234000 chr1A 94.898 98 5 0 1 98 406176889 406176792 1.670000e-33 154.0
9 TraesCS1D01G234000 chr1A 96.296 54 2 0 3414 3467 406173688 406173635 4.770000e-14 89.8
10 TraesCS1D01G234000 chrUn 91.026 156 8 2 303 452 79229022 79228867 4.540000e-49 206.0
11 TraesCS1D01G234000 chr4B 90.446 157 8 3 303 452 82604847 82605003 2.110000e-47 200.0
12 TraesCS1D01G234000 chr4B 86.928 153 14 2 306 452 553526869 553526717 2.140000e-37 167.0
13 TraesCS1D01G234000 chr6A 89.103 156 9 4 303 452 17832187 17832340 1.640000e-43 187.0
14 TraesCS1D01G234000 chr6A 86.538 156 15 3 304 453 557141876 557141721 2.140000e-37 167.0
15 TraesCS1D01G234000 chr3D 88.235 153 12 2 304 450 593452624 593452776 9.890000e-41 178.0
16 TraesCS1D01G234000 chr3D 89.474 114 12 0 452 565 593452817 593452930 1.000000e-30 145.0
17 TraesCS1D01G234000 chr3D 86.364 110 15 0 464 573 562220632 562220523 1.690000e-23 121.0
18 TraesCS1D01G234000 chr5A 88.079 151 12 2 306 450 524201374 524201224 1.280000e-39 174.0
19 TraesCS1D01G234000 chr5B 86.928 153 14 2 304 450 6363024 6363176 2.140000e-37 167.0
20 TraesCS1D01G234000 chr5B 88.281 128 10 2 452 578 6363217 6363340 7.750000e-32 148.0
21 TraesCS1D01G234000 chr2B 87.963 108 11 2 467 574 88624425 88624320 3.630000e-25 126.0
22 TraesCS1D01G234000 chr3A 75.974 154 33 4 1391 1542 690194620 690194469 3.710000e-10 76.8
23 TraesCS1D01G234000 chr6B 100.000 28 0 0 548 575 550720828 550720801 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G234000 chr1D 322277360 322280826 3466 True 6403.00 6403 100.000 1 3467 1 chr1D.!!$R1 3466
1 TraesCS1D01G234000 chr1B 435160676 435163314 2638 True 4032.00 4032 94.168 802 3465 1 chr1B.!!$R1 2663
2 TraesCS1D01G234000 chr1B 435175040 435175575 535 True 789.00 789 93.321 269 802 1 chr1B.!!$R2 533
3 TraesCS1D01G234000 chr1A 406173635 406176889 3254 True 806.56 1851 93.244 1 3467 5 chr1A.!!$R1 3466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.106335 CACAGCATGCACCCCAAAAA 59.894 50.0 21.98 0.0 42.53 1.94 F
231 232 0.110238 CGGTTCTTGCACACGGATTG 60.110 55.0 0.00 0.0 0.00 2.67 F
232 233 0.240945 GGTTCTTGCACACGGATTGG 59.759 55.0 0.00 0.0 0.00 3.16 F
256 257 0.664166 GGTTGCCGCAAAGATGTGTG 60.664 55.0 7.54 0.0 35.21 3.82 F
266 267 0.670546 AAGATGTGTGGTCGAAGCCG 60.671 55.0 0.00 0.0 37.07 5.52 F
1873 1960 1.262640 GGCAGGAGGAGAAACCGGTA 61.263 60.0 8.00 0.0 44.74 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1666 1750 0.538057 TGGCCTTGGAGTTGCTCTTG 60.538 55.000 3.32 0.00 0.00 3.02 R
1667 1751 0.538287 GTGGCCTTGGAGTTGCTCTT 60.538 55.000 3.32 0.00 0.00 2.85 R
1775 1859 1.738099 GATGGCTGACAGCGTCGTT 60.738 57.895 20.82 3.84 43.62 3.85 R
1832 1916 1.813337 GCTGCTTCCGCTTCCTCTC 60.813 63.158 0.00 0.00 36.97 3.20 R
2095 2185 2.815647 GAGTAGTGGCAGCACGGC 60.816 66.667 0.00 0.00 41.67 5.68 R
3160 3524 0.108615 CTCTGGTGGTCATGGTCGTC 60.109 60.000 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.106335 CACAGCATGCACCCCAAAAA 59.894 50.000 21.98 0.00 42.53 1.94
27 28 1.115467 TGCACCCCAAAAACACGAAT 58.885 45.000 0.00 0.00 0.00 3.34
36 37 4.466828 CCAAAAACACGAATAGAGCACAG 58.533 43.478 0.00 0.00 0.00 3.66
67 68 1.705337 GCACACAAGCACACGTCACT 61.705 55.000 0.00 0.00 0.00 3.41
98 99 2.524394 AGGAGCTCACCACGGTGT 60.524 61.111 17.19 0.00 45.55 4.16
99 100 2.048127 GGAGCTCACCACGGTGTC 60.048 66.667 17.19 6.45 45.55 3.67
100 101 2.048127 GAGCTCACCACGGTGTCC 60.048 66.667 15.65 8.16 45.55 4.02
101 102 2.842462 AGCTCACCACGGTGTCCA 60.842 61.111 15.65 0.00 45.55 4.02
103 104 2.867855 GCTCACCACGGTGTCCAGA 61.868 63.158 15.65 0.00 45.55 3.86
104 105 1.290324 CTCACCACGGTGTCCAGAG 59.710 63.158 15.65 2.06 45.55 3.35
105 106 2.357517 CACCACGGTGTCCAGAGC 60.358 66.667 8.11 0.00 40.91 4.09
106 107 2.842462 ACCACGGTGTCCAGAGCA 60.842 61.111 7.45 0.00 0.00 4.26
107 108 2.047844 CCACGGTGTCCAGAGCAG 60.048 66.667 7.45 0.00 0.00 4.24
108 109 2.740055 CACGGTGTCCAGAGCAGC 60.740 66.667 0.00 0.00 0.00 5.25
111 112 2.581354 GGTGTCCAGAGCAGCGAT 59.419 61.111 0.00 0.00 0.00 4.58
112 113 1.078848 GGTGTCCAGAGCAGCGATT 60.079 57.895 0.00 0.00 0.00 3.34
113 114 1.086634 GGTGTCCAGAGCAGCGATTC 61.087 60.000 0.00 0.00 0.00 2.52
114 115 1.086634 GTGTCCAGAGCAGCGATTCC 61.087 60.000 0.00 0.00 0.00 3.01
115 116 1.260538 TGTCCAGAGCAGCGATTCCT 61.261 55.000 0.00 0.00 0.00 3.36
116 117 0.529555 GTCCAGAGCAGCGATTCCTC 60.530 60.000 0.00 0.00 0.00 3.71
117 118 1.227497 CCAGAGCAGCGATTCCTCC 60.227 63.158 0.00 0.00 0.00 4.30
118 119 1.591059 CAGAGCAGCGATTCCTCCG 60.591 63.158 0.00 0.00 0.00 4.63
125 126 4.812476 CGATTCCTCCGCCGCACA 62.812 66.667 0.00 0.00 0.00 4.57
126 127 3.195698 GATTCCTCCGCCGCACAC 61.196 66.667 0.00 0.00 0.00 3.82
154 155 2.893398 CGACTTCGCCCTAGCCTT 59.107 61.111 0.00 0.00 34.57 4.35
155 156 1.227002 CGACTTCGCCCTAGCCTTC 60.227 63.158 0.00 0.00 34.57 3.46
156 157 1.144276 GACTTCGCCCTAGCCTTCC 59.856 63.158 0.00 0.00 34.57 3.46
157 158 1.612442 ACTTCGCCCTAGCCTTCCA 60.612 57.895 0.00 0.00 34.57 3.53
158 159 0.983378 ACTTCGCCCTAGCCTTCCAT 60.983 55.000 0.00 0.00 34.57 3.41
159 160 0.533755 CTTCGCCCTAGCCTTCCATG 60.534 60.000 0.00 0.00 34.57 3.66
160 161 1.983119 TTCGCCCTAGCCTTCCATGG 61.983 60.000 4.97 4.97 34.57 3.66
176 177 4.715523 GGCTTGCCCACTGCCGTA 62.716 66.667 0.00 0.00 40.16 4.02
177 178 3.127533 GCTTGCCCACTGCCGTAG 61.128 66.667 0.00 0.00 40.16 3.51
178 179 3.127533 CTTGCCCACTGCCGTAGC 61.128 66.667 0.00 0.00 40.16 3.58
179 180 3.612247 CTTGCCCACTGCCGTAGCT 62.612 63.158 0.00 0.00 40.80 3.32
180 181 3.605749 TTGCCCACTGCCGTAGCTC 62.606 63.158 0.00 0.00 40.80 4.09
181 182 4.840005 GCCCACTGCCGTAGCTCC 62.840 72.222 0.00 0.00 40.80 4.70
182 183 3.077556 CCCACTGCCGTAGCTCCT 61.078 66.667 0.00 0.00 40.80 3.69
183 184 2.185350 CCACTGCCGTAGCTCCTG 59.815 66.667 0.00 0.00 40.80 3.86
184 185 2.510238 CACTGCCGTAGCTCCTGC 60.510 66.667 0.00 0.00 40.80 4.85
185 186 2.997315 ACTGCCGTAGCTCCTGCA 60.997 61.111 0.00 0.00 42.74 4.41
186 187 2.510238 CTGCCGTAGCTCCTGCAC 60.510 66.667 0.00 0.00 42.74 4.57
187 188 4.435436 TGCCGTAGCTCCTGCACG 62.435 66.667 0.00 0.00 42.74 5.34
190 191 4.778415 CGTAGCTCCTGCACGCGT 62.778 66.667 5.58 5.58 42.74 6.01
191 192 2.881352 GTAGCTCCTGCACGCGTC 60.881 66.667 9.86 5.12 42.74 5.19
192 193 3.370231 TAGCTCCTGCACGCGTCA 61.370 61.111 9.86 10.11 42.74 4.35
193 194 3.626680 TAGCTCCTGCACGCGTCAC 62.627 63.158 9.86 5.06 42.74 3.67
195 196 3.108289 CTCCTGCACGCGTCACAG 61.108 66.667 24.94 24.94 0.00 3.66
198 199 2.433145 CTGCACGCGTCACAGGAT 60.433 61.111 24.42 0.00 0.00 3.24
199 200 2.029288 CTGCACGCGTCACAGGATT 61.029 57.895 24.42 0.00 0.00 3.01
200 201 1.568612 CTGCACGCGTCACAGGATTT 61.569 55.000 24.42 0.00 0.00 2.17
201 202 1.154413 GCACGCGTCACAGGATTTG 60.154 57.895 9.86 0.00 0.00 2.32
202 203 1.841663 GCACGCGTCACAGGATTTGT 61.842 55.000 9.86 0.00 41.94 2.83
211 212 1.523758 ACAGGATTTGTGGTCGAAGC 58.476 50.000 0.00 0.00 38.99 3.86
212 213 0.804989 CAGGATTTGTGGTCGAAGCC 59.195 55.000 0.00 0.00 42.17 4.35
213 214 0.673644 AGGATTTGTGGTCGAAGCCG 60.674 55.000 0.00 0.00 45.31 5.52
214 215 1.644786 GGATTTGTGGTCGAAGCCGG 61.645 60.000 0.00 0.00 34.41 6.13
215 216 0.953960 GATTTGTGGTCGAAGCCGGT 60.954 55.000 1.90 0.00 36.24 5.28
216 217 0.536460 ATTTGTGGTCGAAGCCGGTT 60.536 50.000 1.90 0.00 36.24 4.44
217 218 1.161563 TTTGTGGTCGAAGCCGGTTC 61.162 55.000 1.90 4.98 36.24 3.62
218 219 2.035237 TTGTGGTCGAAGCCGGTTCT 62.035 55.000 1.90 0.00 36.24 3.01
219 220 1.301479 GTGGTCGAAGCCGGTTCTT 60.301 57.895 1.90 0.00 36.24 2.52
220 221 1.301401 TGGTCGAAGCCGGTTCTTG 60.301 57.895 1.90 0.00 36.24 3.02
221 222 2.677979 GGTCGAAGCCGGTTCTTGC 61.678 63.158 1.90 0.00 36.24 4.01
222 223 1.959226 GTCGAAGCCGGTTCTTGCA 60.959 57.895 1.90 0.00 36.24 4.08
223 224 1.959226 TCGAAGCCGGTTCTTGCAC 60.959 57.895 1.90 0.00 36.24 4.57
224 225 2.250939 CGAAGCCGGTTCTTGCACA 61.251 57.895 1.90 0.00 32.33 4.57
225 226 1.282875 GAAGCCGGTTCTTGCACAC 59.717 57.895 1.90 0.00 31.73 3.82
226 227 2.443957 GAAGCCGGTTCTTGCACACG 62.444 60.000 1.90 0.00 31.73 4.49
227 228 4.025401 GCCGGTTCTTGCACACGG 62.025 66.667 1.90 8.76 46.78 4.94
229 230 3.966215 CGGTTCTTGCACACGGAT 58.034 55.556 0.00 0.00 0.00 4.18
230 231 2.244000 CGGTTCTTGCACACGGATT 58.756 52.632 0.00 0.00 0.00 3.01
231 232 0.110238 CGGTTCTTGCACACGGATTG 60.110 55.000 0.00 0.00 0.00 2.67
232 233 0.240945 GGTTCTTGCACACGGATTGG 59.759 55.000 0.00 0.00 0.00 3.16
233 234 0.951558 GTTCTTGCACACGGATTGGT 59.048 50.000 0.00 0.00 0.00 3.67
234 235 2.147958 GTTCTTGCACACGGATTGGTA 58.852 47.619 0.00 0.00 0.00 3.25
235 236 1.803334 TCTTGCACACGGATTGGTAC 58.197 50.000 0.00 0.00 0.00 3.34
236 237 0.802494 CTTGCACACGGATTGGTACC 59.198 55.000 4.43 4.43 0.00 3.34
242 243 3.493213 CGGATTGGTACCGGTTGC 58.507 61.111 15.04 6.32 45.65 4.17
243 244 2.110352 CGGATTGGTACCGGTTGCC 61.110 63.158 15.04 16.89 45.65 4.52
245 246 2.748647 ATTGGTACCGGTTGCCGC 60.749 61.111 15.04 0.00 46.86 6.53
246 247 3.554696 ATTGGTACCGGTTGCCGCA 62.555 57.895 15.04 7.22 46.86 5.69
247 248 3.769369 TTGGTACCGGTTGCCGCAA 62.769 57.895 15.04 0.38 46.86 4.85
248 249 2.979120 GGTACCGGTTGCCGCAAA 60.979 61.111 15.04 0.00 46.86 3.68
249 250 2.559330 GTACCGGTTGCCGCAAAG 59.441 61.111 15.04 5.15 46.86 2.77
250 251 1.962306 GTACCGGTTGCCGCAAAGA 60.962 57.895 15.04 0.00 46.86 2.52
251 252 1.003112 TACCGGTTGCCGCAAAGAT 60.003 52.632 15.04 0.00 46.86 2.40
252 253 1.302383 TACCGGTTGCCGCAAAGATG 61.302 55.000 15.04 0.00 46.86 2.90
253 254 2.625823 CCGGTTGCCGCAAAGATGT 61.626 57.895 7.54 0.00 46.86 3.06
254 255 1.442520 CGGTTGCCGCAAAGATGTG 60.443 57.895 7.54 0.00 41.17 3.21
255 256 1.659794 GGTTGCCGCAAAGATGTGT 59.340 52.632 7.54 0.00 35.21 3.72
256 257 0.664166 GGTTGCCGCAAAGATGTGTG 60.664 55.000 7.54 0.00 35.21 3.82
260 261 1.497278 CCGCAAAGATGTGTGGTCG 59.503 57.895 0.00 0.00 43.05 4.79
261 262 0.948623 CCGCAAAGATGTGTGGTCGA 60.949 55.000 0.00 0.00 43.05 4.20
262 263 0.865111 CGCAAAGATGTGTGGTCGAA 59.135 50.000 0.00 0.00 32.29 3.71
263 264 1.136252 CGCAAAGATGTGTGGTCGAAG 60.136 52.381 0.00 0.00 32.29 3.79
264 265 1.400242 GCAAAGATGTGTGGTCGAAGC 60.400 52.381 0.00 0.00 0.00 3.86
265 266 1.197721 CAAAGATGTGTGGTCGAAGCC 59.802 52.381 0.00 0.00 0.00 4.35
266 267 0.670546 AAGATGTGTGGTCGAAGCCG 60.671 55.000 0.00 0.00 37.07 5.52
267 268 1.374252 GATGTGTGGTCGAAGCCGT 60.374 57.895 0.00 0.00 37.05 5.68
283 284 1.810030 CGTCAAGTAAGAGGCGGCC 60.810 63.158 12.11 12.11 0.00 6.13
291 292 1.945354 TAAGAGGCGGCCGAGAAGTG 61.945 60.000 33.48 0.00 0.00 3.16
292 293 4.821589 GAGGCGGCCGAGAAGTGG 62.822 72.222 33.48 0.00 0.00 4.00
330 331 4.122776 CGGATCCTCTAACATTCACAAGG 58.877 47.826 10.75 0.00 0.00 3.61
349 350 8.208224 TCACAAGGAATGTTAGAGAAGTTACAA 58.792 33.333 0.00 0.00 41.46 2.41
354 355 8.822805 AGGAATGTTAGAGAAGTTACAATACCA 58.177 33.333 0.00 0.00 0.00 3.25
371 377 8.888579 ACAATACCATAACTTCTTTCTATCCG 57.111 34.615 0.00 0.00 0.00 4.18
479 485 7.733402 ATTGTACGTACCAACAGTAAACAAT 57.267 32.000 22.43 10.65 36.83 2.71
487 493 7.148474 CGTACCAACAGTAAACAATCTGCTAAT 60.148 37.037 0.00 0.00 35.37 1.73
491 497 8.391106 CCAACAGTAAACAATCTGCTAATAGTC 58.609 37.037 0.00 0.00 35.37 2.59
530 536 8.029522 TCTTGAATTTACACTAGACTAGCACTG 58.970 37.037 9.52 3.47 0.00 3.66
546 552 2.554032 GCACTGTAGCATGGTGACTTTT 59.446 45.455 7.89 0.00 33.32 2.27
572 578 4.120589 GTGAATGTTAGAGGATCCGGTTC 58.879 47.826 5.98 1.67 33.66 3.62
573 579 3.134081 TGAATGTTAGAGGATCCGGTTCC 59.866 47.826 22.05 22.05 33.66 3.62
1289 1355 2.257371 CGATGGTGTGTCGTCGGT 59.743 61.111 0.00 0.00 41.07 4.69
1308 1391 3.815401 CGGTTCTCCAACATTTTCACTCT 59.185 43.478 0.00 0.00 33.70 3.24
1309 1392 4.319766 CGGTTCTCCAACATTTTCACTCTG 60.320 45.833 0.00 0.00 33.70 3.35
1310 1393 4.540824 GTTCTCCAACATTTTCACTCTGC 58.459 43.478 0.00 0.00 32.14 4.26
1513 1597 2.281761 AAGAACGCCCAGCTGTGG 60.282 61.111 13.81 14.43 44.56 4.17
1666 1750 3.723348 GGGACAAACGCCGCAGAC 61.723 66.667 0.00 0.00 0.00 3.51
1667 1751 2.970324 GGACAAACGCCGCAGACA 60.970 61.111 0.00 0.00 0.00 3.41
1689 1773 2.520458 CAACTCCAAGGCCACCCA 59.480 61.111 5.01 0.00 0.00 4.51
1713 1797 3.771577 AGAAGATCCCAACAAAGTCGT 57.228 42.857 0.00 0.00 0.00 4.34
1873 1960 1.262640 GGCAGGAGGAGAAACCGGTA 61.263 60.000 8.00 0.00 44.74 4.02
1936 2023 1.526686 CAGCCACACTTGCCACTCA 60.527 57.895 0.00 0.00 0.00 3.41
2095 2185 2.793946 CTCCCGTACACGTACCCG 59.206 66.667 0.58 0.00 37.74 5.28
2113 2203 2.656646 CCGTGCTGCCACTACTCA 59.343 61.111 0.00 0.00 39.86 3.41
2207 2297 1.885871 GACAATGCCAACTCCTGCC 59.114 57.895 0.00 0.00 0.00 4.85
2275 2365 5.178809 ACCGTCAAGTTAATTGCAGTTAGTC 59.821 40.000 1.70 0.95 38.89 2.59
2420 2776 7.169140 GTGATGACCCAACTTTGTAAAATTGTC 59.831 37.037 0.00 0.00 0.00 3.18
2474 2830 8.622948 TTAATCAGGTTTCTCTTTTCCTCTTC 57.377 34.615 0.00 0.00 0.00 2.87
2489 2845 5.695851 TCCTCTTCTCATTTTCTTGTTGC 57.304 39.130 0.00 0.00 0.00 4.17
2514 2870 9.918630 GCATCTAGATGTAAATTATTTGCCAAT 57.081 29.630 28.92 0.00 40.80 3.16
2630 2986 2.299993 TTGTCATGAGCTCCGTGATC 57.700 50.000 18.39 13.44 42.29 2.92
2643 2999 0.863799 CGTGATCCGATTGCATGAGG 59.136 55.000 0.00 0.00 39.56 3.86
2688 3044 3.430098 GGCAATCACAGTTTTGGTCAACA 60.430 43.478 0.00 0.00 0.00 3.33
2689 3045 4.180057 GCAATCACAGTTTTGGTCAACAA 58.820 39.130 0.00 0.00 37.28 2.83
2690 3046 4.032786 GCAATCACAGTTTTGGTCAACAAC 59.967 41.667 0.00 0.00 39.19 3.32
2723 3079 1.154197 GACCGACTTAACTGCCAACC 58.846 55.000 0.00 0.00 0.00 3.77
2744 3100 5.269189 ACCCCAAAAAGAAAAAGAGACTGA 58.731 37.500 0.00 0.00 0.00 3.41
2807 3163 2.026915 TGATGTGGATTGACAGGACTGG 60.027 50.000 4.14 0.00 34.19 4.00
2816 3172 0.680061 GACAGGACTGGAAAGACCGT 59.320 55.000 4.14 0.00 42.61 4.83
2843 3200 2.029649 ACATGTTGCTTCTGATTGCCAC 60.030 45.455 0.00 1.91 0.00 5.01
2857 3214 0.249120 TGCCACCGAATCGAGACAAT 59.751 50.000 3.36 0.00 0.00 2.71
2883 3240 7.062322 ACTTTCCATGCATTAACCTGATCATA 58.938 34.615 0.00 0.00 0.00 2.15
2926 3283 3.009143 GTGATTTACCCTGACTTGTCCCT 59.991 47.826 0.00 0.00 0.00 4.20
2934 3291 5.098663 ACCCTGACTTGTCCCTTCTTAATA 58.901 41.667 0.00 0.00 0.00 0.98
2943 3300 9.362151 ACTTGTCCCTTCTTAATACATTTTTCA 57.638 29.630 0.00 0.00 0.00 2.69
2946 3303 9.527157 TGTCCCTTCTTAATACATTTTTCATGA 57.473 29.630 0.00 0.00 0.00 3.07
2960 3317 4.853924 TTTCATGACTTCAGAAAAGGGC 57.146 40.909 0.00 0.00 0.00 5.19
2975 3332 1.362224 AGGGCAACAAGAGAAGGCTA 58.638 50.000 0.00 0.00 39.74 3.93
2985 3343 4.021544 ACAAGAGAAGGCTAGAGTTGACAG 60.022 45.833 0.00 0.00 0.00 3.51
3011 3369 3.212685 CTCTTCCTCATTGAATGGCCTC 58.787 50.000 3.32 0.00 0.00 4.70
3125 3489 2.439701 CAGAGGGCAGTGCATGGG 60.440 66.667 18.61 0.00 0.00 4.00
3174 3538 2.380410 GCACGACGACCATGACCAC 61.380 63.158 0.00 0.00 0.00 4.16
3175 3539 1.736645 CACGACGACCATGACCACC 60.737 63.158 0.00 0.00 0.00 4.61
3177 3541 1.446099 CGACGACCATGACCACCAG 60.446 63.158 0.00 0.00 0.00 4.00
3178 3542 1.873270 CGACGACCATGACCACCAGA 61.873 60.000 0.00 0.00 0.00 3.86
3179 3543 0.108615 GACGACCATGACCACCAGAG 60.109 60.000 0.00 0.00 0.00 3.35
3180 3544 1.448540 CGACCATGACCACCAGAGC 60.449 63.158 0.00 0.00 0.00 4.09
3184 3548 1.379916 CATGACCACCAGAGCCCAA 59.620 57.895 0.00 0.00 0.00 4.12
3267 3631 2.101582 ACAGCTTGTTAGGATAGAGGCG 59.898 50.000 0.00 0.00 0.00 5.52
3290 3654 5.796935 CGACAAATGTGAGAAATCCATGTTC 59.203 40.000 0.00 0.00 0.00 3.18
3392 3756 0.107017 ATGGTATGGGCTGCACACTC 60.107 55.000 6.79 2.84 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.093973 CCTTCCTGTGCTCTATTCGTGT 60.094 50.000 0.00 0.00 0.00 4.49
27 28 1.599047 GCTGCCTTCCTGTGCTCTA 59.401 57.895 0.00 0.00 0.00 2.43
98 99 1.680522 GGAGGAATCGCTGCTCTGGA 61.681 60.000 0.00 0.00 42.05 3.86
99 100 1.227497 GGAGGAATCGCTGCTCTGG 60.227 63.158 0.00 0.00 42.05 3.86
100 101 1.591059 CGGAGGAATCGCTGCTCTG 60.591 63.158 0.00 3.71 42.05 3.35
101 102 2.811101 CGGAGGAATCGCTGCTCT 59.189 61.111 0.00 0.00 42.05 4.09
108 109 4.812476 TGTGCGGCGGAGGAATCG 62.812 66.667 9.78 0.00 0.00 3.34
109 110 3.195698 GTGTGCGGCGGAGGAATC 61.196 66.667 9.78 0.00 0.00 2.52
137 138 1.227002 GAAGGCTAGGGCGAAGTCG 60.227 63.158 0.00 0.00 43.27 4.18
138 139 1.144276 GGAAGGCTAGGGCGAAGTC 59.856 63.158 0.00 0.00 39.81 3.01
139 140 0.983378 ATGGAAGGCTAGGGCGAAGT 60.983 55.000 0.00 0.00 39.81 3.01
140 141 0.533755 CATGGAAGGCTAGGGCGAAG 60.534 60.000 0.00 0.00 39.81 3.79
141 142 1.526887 CATGGAAGGCTAGGGCGAA 59.473 57.895 0.00 0.00 39.81 4.70
142 143 2.443394 CCATGGAAGGCTAGGGCGA 61.443 63.158 5.56 0.00 39.81 5.54
143 144 2.111878 CCATGGAAGGCTAGGGCG 59.888 66.667 5.56 0.00 39.81 6.13
151 152 2.037687 TGGGCAAGCCATGGAAGG 59.962 61.111 18.40 4.07 37.98 3.46
152 153 1.304713 AGTGGGCAAGCCATGGAAG 60.305 57.895 18.40 4.92 37.98 3.46
153 154 1.607178 CAGTGGGCAAGCCATGGAA 60.607 57.895 18.40 0.00 37.98 3.53
154 155 2.036098 CAGTGGGCAAGCCATGGA 59.964 61.111 18.40 0.00 37.98 3.41
155 156 3.766691 GCAGTGGGCAAGCCATGG 61.767 66.667 13.87 7.63 43.97 3.66
164 165 4.840005 GGAGCTACGGCAGTGGGC 62.840 72.222 0.00 4.23 41.70 5.36
165 166 3.077556 AGGAGCTACGGCAGTGGG 61.078 66.667 0.00 0.00 41.70 4.61
166 167 2.185350 CAGGAGCTACGGCAGTGG 59.815 66.667 0.00 0.00 41.70 4.00
167 168 2.510238 GCAGGAGCTACGGCAGTG 60.510 66.667 16.93 0.00 41.70 3.66
168 169 2.997315 TGCAGGAGCTACGGCAGT 60.997 61.111 20.67 0.00 42.74 4.40
169 170 2.510238 GTGCAGGAGCTACGGCAG 60.510 66.667 24.99 0.00 42.74 4.85
170 171 4.435436 CGTGCAGGAGCTACGGCA 62.435 66.667 20.67 20.67 42.74 5.69
173 174 4.778415 ACGCGTGCAGGAGCTACG 62.778 66.667 12.93 6.21 43.32 3.51
174 175 2.881352 GACGCGTGCAGGAGCTAC 60.881 66.667 20.70 0.00 42.74 3.58
175 176 3.370231 TGACGCGTGCAGGAGCTA 61.370 61.111 20.70 0.00 42.74 3.32
178 179 3.108289 CTGTGACGCGTGCAGGAG 61.108 66.667 20.70 9.89 0.00 3.69
181 182 1.568612 AAATCCTGTGACGCGTGCAG 61.569 55.000 20.70 23.56 0.00 4.41
182 183 1.596752 AAATCCTGTGACGCGTGCA 60.597 52.632 20.70 15.02 0.00 4.57
183 184 1.154413 CAAATCCTGTGACGCGTGC 60.154 57.895 20.70 10.36 0.00 5.34
184 185 2.234613 ACAAATCCTGTGACGCGTG 58.765 52.632 20.70 0.43 36.69 5.34
185 186 4.771127 ACAAATCCTGTGACGCGT 57.229 50.000 13.85 13.85 36.69 6.01
192 193 1.523758 GCTTCGACCACAAATCCTGT 58.476 50.000 0.00 0.00 39.56 4.00
193 194 0.804989 GGCTTCGACCACAAATCCTG 59.195 55.000 0.00 0.00 0.00 3.86
194 195 0.673644 CGGCTTCGACCACAAATCCT 60.674 55.000 0.00 0.00 35.61 3.24
195 196 1.644786 CCGGCTTCGACCACAAATCC 61.645 60.000 0.00 0.00 35.61 3.01
196 197 0.953960 ACCGGCTTCGACCACAAATC 60.954 55.000 0.00 0.00 35.61 2.17
197 198 0.536460 AACCGGCTTCGACCACAAAT 60.536 50.000 0.00 0.00 35.61 2.32
198 199 1.153127 AACCGGCTTCGACCACAAA 60.153 52.632 0.00 0.00 35.61 2.83
199 200 1.595929 GAACCGGCTTCGACCACAA 60.596 57.895 0.00 0.00 35.61 3.33
200 201 2.029964 GAACCGGCTTCGACCACA 59.970 61.111 0.00 0.00 35.61 4.17
201 202 1.301479 AAGAACCGGCTTCGACCAC 60.301 57.895 0.00 0.00 33.60 4.16
202 203 1.301401 CAAGAACCGGCTTCGACCA 60.301 57.895 0.00 0.00 33.60 4.02
203 204 2.677979 GCAAGAACCGGCTTCGACC 61.678 63.158 0.00 0.00 33.60 4.79
204 205 1.959226 TGCAAGAACCGGCTTCGAC 60.959 57.895 0.00 1.14 33.60 4.20
205 206 1.959226 GTGCAAGAACCGGCTTCGA 60.959 57.895 0.00 0.00 33.60 3.71
206 207 2.250939 TGTGCAAGAACCGGCTTCG 61.251 57.895 0.00 0.00 33.60 3.79
207 208 1.282875 GTGTGCAAGAACCGGCTTC 59.717 57.895 0.00 4.90 0.00 3.86
208 209 2.542907 CGTGTGCAAGAACCGGCTT 61.543 57.895 0.00 0.00 0.00 4.35
209 210 2.972505 CGTGTGCAAGAACCGGCT 60.973 61.111 0.00 0.00 0.00 5.52
210 211 4.025401 CCGTGTGCAAGAACCGGC 62.025 66.667 0.00 0.00 30.71 6.13
211 212 1.234615 AATCCGTGTGCAAGAACCGG 61.235 55.000 0.00 0.00 36.09 5.28
212 213 0.110238 CAATCCGTGTGCAAGAACCG 60.110 55.000 0.00 0.00 0.00 4.44
213 214 0.240945 CCAATCCGTGTGCAAGAACC 59.759 55.000 0.00 0.00 0.00 3.62
214 215 0.951558 ACCAATCCGTGTGCAAGAAC 59.048 50.000 0.00 0.00 0.00 3.01
215 216 2.147958 GTACCAATCCGTGTGCAAGAA 58.852 47.619 0.00 0.00 0.00 2.52
216 217 1.609580 GGTACCAATCCGTGTGCAAGA 60.610 52.381 7.15 0.00 0.00 3.02
217 218 0.802494 GGTACCAATCCGTGTGCAAG 59.198 55.000 7.15 0.00 0.00 4.01
218 219 0.951525 CGGTACCAATCCGTGTGCAA 60.952 55.000 13.54 0.00 42.62 4.08
219 220 1.374885 CGGTACCAATCCGTGTGCA 60.375 57.895 13.54 0.00 42.62 4.57
220 221 2.104253 CCGGTACCAATCCGTGTGC 61.104 63.158 13.54 0.00 45.63 4.57
221 222 0.320946 AACCGGTACCAATCCGTGTG 60.321 55.000 8.00 0.00 45.63 3.82
222 223 0.320946 CAACCGGTACCAATCCGTGT 60.321 55.000 8.00 0.00 45.63 4.49
223 224 1.641123 GCAACCGGTACCAATCCGTG 61.641 60.000 8.00 0.00 45.63 4.94
224 225 1.376295 GCAACCGGTACCAATCCGT 60.376 57.895 8.00 0.00 45.63 4.69
225 226 2.110352 GGCAACCGGTACCAATCCG 61.110 63.158 19.25 0.00 46.49 4.18
226 227 2.110352 CGGCAACCGGTACCAATCC 61.110 63.158 22.65 10.80 44.15 3.01
227 228 3.493213 CGGCAACCGGTACCAATC 58.507 61.111 22.65 4.28 44.15 2.67
237 238 0.664166 CACACATCTTTGCGGCAACC 60.664 55.000 16.15 0.00 0.00 3.77
238 239 0.664166 CCACACATCTTTGCGGCAAC 60.664 55.000 16.15 0.00 0.00 4.17
239 240 1.106351 ACCACACATCTTTGCGGCAA 61.106 50.000 12.11 12.11 0.00 4.52
240 241 1.514678 GACCACACATCTTTGCGGCA 61.515 55.000 0.00 0.00 0.00 5.69
241 242 1.210155 GACCACACATCTTTGCGGC 59.790 57.895 0.00 0.00 0.00 6.53
242 243 0.948623 TCGACCACACATCTTTGCGG 60.949 55.000 0.00 0.00 0.00 5.69
243 244 0.865111 TTCGACCACACATCTTTGCG 59.135 50.000 0.00 0.00 0.00 4.85
244 245 1.400242 GCTTCGACCACACATCTTTGC 60.400 52.381 0.00 0.00 0.00 3.68
245 246 1.197721 GGCTTCGACCACACATCTTTG 59.802 52.381 0.00 0.00 0.00 2.77
246 247 1.523758 GGCTTCGACCACACATCTTT 58.476 50.000 0.00 0.00 0.00 2.52
247 248 0.670546 CGGCTTCGACCACACATCTT 60.671 55.000 0.00 0.00 35.61 2.40
248 249 1.079819 CGGCTTCGACCACACATCT 60.080 57.895 0.00 0.00 35.61 2.90
249 250 1.352156 GACGGCTTCGACCACACATC 61.352 60.000 0.00 0.00 37.63 3.06
250 251 1.374252 GACGGCTTCGACCACACAT 60.374 57.895 0.00 0.00 37.63 3.21
251 252 2.028484 GACGGCTTCGACCACACA 59.972 61.111 0.00 0.00 37.63 3.72
252 253 1.557443 CTTGACGGCTTCGACCACAC 61.557 60.000 0.00 0.00 37.63 3.82
253 254 1.300620 CTTGACGGCTTCGACCACA 60.301 57.895 0.00 0.00 37.63 4.17
254 255 0.038892 TACTTGACGGCTTCGACCAC 60.039 55.000 0.00 0.00 37.63 4.16
255 256 0.675083 TTACTTGACGGCTTCGACCA 59.325 50.000 0.00 0.00 37.63 4.02
256 257 1.068055 TCTTACTTGACGGCTTCGACC 60.068 52.381 0.00 0.00 37.63 4.79
257 258 2.251893 CTCTTACTTGACGGCTTCGAC 58.748 52.381 0.00 0.00 37.63 4.20
258 259 1.201647 CCTCTTACTTGACGGCTTCGA 59.798 52.381 0.00 0.00 37.63 3.71
259 260 1.630148 CCTCTTACTTGACGGCTTCG 58.370 55.000 0.00 0.00 40.22 3.79
260 261 1.360820 GCCTCTTACTTGACGGCTTC 58.639 55.000 0.00 0.00 37.76 3.86
261 262 0.389948 CGCCTCTTACTTGACGGCTT 60.390 55.000 0.00 0.00 38.58 4.35
262 263 1.215647 CGCCTCTTACTTGACGGCT 59.784 57.895 0.00 0.00 38.58 5.52
263 264 1.810030 CCGCCTCTTACTTGACGGC 60.810 63.158 0.00 0.00 37.40 5.68
264 265 1.810030 GCCGCCTCTTACTTGACGG 60.810 63.158 0.00 0.00 43.37 4.79
265 266 1.810030 GGCCGCCTCTTACTTGACG 60.810 63.158 0.71 0.00 0.00 4.35
266 267 1.810030 CGGCCGCCTCTTACTTGAC 60.810 63.158 14.67 0.00 0.00 3.18
267 268 1.945354 CTCGGCCGCCTCTTACTTGA 61.945 60.000 23.51 0.00 0.00 3.02
456 462 6.985645 AGATTGTTTACTGTTGGTACGTACAA 59.014 34.615 26.02 13.80 34.26 2.41
457 463 6.421501 CAGATTGTTTACTGTTGGTACGTACA 59.578 38.462 26.02 8.37 0.00 2.90
461 467 4.451096 AGCAGATTGTTTACTGTTGGTACG 59.549 41.667 0.00 0.00 36.62 3.67
465 471 8.268850 ACTATTAGCAGATTGTTTACTGTTGG 57.731 34.615 0.00 0.00 36.62 3.77
479 485 7.735326 AGAAAAGTTAGGGACTATTAGCAGA 57.265 36.000 0.00 0.00 42.38 4.26
487 493 9.862149 AAATTCAAGAAGAAAAGTTAGGGACTA 57.138 29.630 0.00 0.00 40.22 2.59
491 497 9.678941 GTGTAAATTCAAGAAGAAAAGTTAGGG 57.321 33.333 0.00 0.00 40.22 3.53
522 528 2.167281 AGTCACCATGCTACAGTGCTAG 59.833 50.000 0.00 0.00 0.00 3.42
530 536 4.515191 TCACAAGAAAAGTCACCATGCTAC 59.485 41.667 0.00 0.00 0.00 3.58
546 552 4.141937 CCGGATCCTCTAACATTCACAAGA 60.142 45.833 10.75 0.00 0.00 3.02
659 665 2.724672 ACTCTATAGGGATCAGGGCTCA 59.275 50.000 6.63 0.00 0.00 4.26
829 835 1.152881 GCCATCACCACCATCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
1151 1214 3.377798 GGAGGGTAAGACTCGAGTAACAG 59.622 52.174 20.09 0.00 35.82 3.16
1289 1355 4.276678 CAGCAGAGTGAAAATGTTGGAGAA 59.723 41.667 0.00 0.00 0.00 2.87
1308 1391 2.369860 AGATGGACAAGTGAAGACAGCA 59.630 45.455 0.00 0.00 0.00 4.41
1309 1392 3.051081 AGATGGACAAGTGAAGACAGC 57.949 47.619 0.00 0.00 0.00 4.40
1310 1393 7.524912 CAAAATAGATGGACAAGTGAAGACAG 58.475 38.462 0.00 0.00 0.00 3.51
1468 1552 2.186384 CGGAGCCTCTTCAGCAGG 59.814 66.667 0.00 0.00 0.00 4.85
1566 1650 1.861971 GTCGTTCTTGGTTTCTCCGT 58.138 50.000 0.00 0.00 39.52 4.69
1650 1734 2.443957 CTTGTCTGCGGCGTTTGTCC 62.444 60.000 9.37 0.00 0.00 4.02
1656 1740 3.807631 TTGCTCTTGTCTGCGGCGT 62.808 57.895 9.37 0.00 0.00 5.68
1666 1750 0.538057 TGGCCTTGGAGTTGCTCTTG 60.538 55.000 3.32 0.00 0.00 3.02
1667 1751 0.538287 GTGGCCTTGGAGTTGCTCTT 60.538 55.000 3.32 0.00 0.00 2.85
1689 1773 4.697352 CGACTTTGTTGGGATCTTCTTCAT 59.303 41.667 0.00 0.00 0.00 2.57
1725 1809 3.181967 CGTCTTGAGCCGGCTTCG 61.182 66.667 33.34 23.90 0.00 3.79
1775 1859 1.738099 GATGGCTGACAGCGTCGTT 60.738 57.895 20.82 3.84 43.62 3.85
1832 1916 1.813337 GCTGCTTCCGCTTCCTCTC 60.813 63.158 0.00 0.00 36.97 3.20
1873 1960 3.785859 ACCGTGGCGATGGCATCT 61.786 61.111 23.97 1.59 40.92 2.90
1936 2023 3.779850 CTGCTGCAGGTGTGGTGGT 62.780 63.158 21.71 0.00 0.00 4.16
2095 2185 2.815647 GAGTAGTGGCAGCACGGC 60.816 66.667 0.00 0.00 41.67 5.68
2207 2297 2.887568 GCTCCCTCACATCACGCG 60.888 66.667 3.53 3.53 0.00 6.01
2309 2663 6.179040 ACCTCGTGATGTTTCTACTAGTAGT 58.821 40.000 25.58 8.14 34.84 2.73
2310 2664 6.680874 ACCTCGTGATGTTTCTACTAGTAG 57.319 41.667 21.87 21.87 34.56 2.57
2311 2665 6.883217 AGAACCTCGTGATGTTTCTACTAGTA 59.117 38.462 1.89 1.89 0.00 1.82
2451 2807 6.846988 AGAAGAGGAAAAGAGAAACCTGATT 58.153 36.000 0.00 0.00 32.53 2.57
2452 2808 6.043706 TGAGAAGAGGAAAAGAGAAACCTGAT 59.956 38.462 0.00 0.00 32.53 2.90
2474 2830 7.759465 ACATCTAGATGCAACAAGAAAATGAG 58.241 34.615 28.86 3.29 42.39 2.90
2514 2870 3.306989 CCAAGGCAGTCATCTCACTACAA 60.307 47.826 0.00 0.00 0.00 2.41
2573 2929 4.391155 ACGGACTTGTTGGCAGTATTTAA 58.609 39.130 0.00 0.00 27.85 1.52
2574 2930 4.010667 ACGGACTTGTTGGCAGTATTTA 57.989 40.909 0.00 0.00 27.85 1.40
2630 2986 0.680921 ACCAACCCTCATGCAATCGG 60.681 55.000 0.00 0.00 0.00 4.18
2643 2999 4.806640 AATCATCACATTCCAACCAACC 57.193 40.909 0.00 0.00 0.00 3.77
2688 3044 6.962567 TAAGTCGGTCTTGACATGAACATGTT 60.963 38.462 19.19 11.78 42.91 2.71
2689 3045 5.510690 TAAGTCGGTCTTGACATGAACATGT 60.511 40.000 18.43 18.43 44.08 3.21
2690 3046 3.329386 AGTCGGTCTTGACATGAACATG 58.671 45.455 12.43 12.43 41.41 3.21
2723 3079 6.456795 AGTCAGTCTCTTTTTCTTTTTGGG 57.543 37.500 0.00 0.00 0.00 4.12
2744 3100 9.337396 TGACATAAAACACTGATTCAGTTAAGT 57.663 29.630 16.64 9.24 42.59 2.24
2807 3163 4.610680 GCAACATGTTCACTACGGTCTTTC 60.611 45.833 8.48 0.00 0.00 2.62
2816 3172 5.335113 GCAATCAGAAGCAACATGTTCACTA 60.335 40.000 8.48 0.00 0.00 2.74
2843 3200 4.430007 TGGAAAGTATTGTCTCGATTCGG 58.570 43.478 6.18 0.00 0.00 4.30
2857 3214 6.422333 TGATCAGGTTAATGCATGGAAAGTA 58.578 36.000 0.00 0.00 0.00 2.24
2934 3291 7.212274 CCCTTTTCTGAAGTCATGAAAAATGT 58.788 34.615 0.00 0.00 38.61 2.71
2943 3300 3.565307 TGTTGCCCTTTTCTGAAGTCAT 58.435 40.909 0.00 0.00 0.00 3.06
2946 3303 3.631250 TCTTGTTGCCCTTTTCTGAAGT 58.369 40.909 0.00 0.00 0.00 3.01
2960 3317 4.688413 GTCAACTCTAGCCTTCTCTTGTTG 59.312 45.833 0.00 0.00 36.05 3.33
2975 3332 2.630580 GGAAGAGGACACTGTCAACTCT 59.369 50.000 11.34 10.91 34.40 3.24
2985 3343 3.944015 CCATTCAATGAGGAAGAGGACAC 59.056 47.826 0.00 0.00 31.23 3.67
3011 3369 1.601759 CTGGGTGGTTGCTCTGGTG 60.602 63.158 0.00 0.00 0.00 4.17
3159 3523 1.446099 CTGGTGGTCATGGTCGTCG 60.446 63.158 0.00 0.00 0.00 5.12
3160 3524 0.108615 CTCTGGTGGTCATGGTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
3161 3525 1.975327 CTCTGGTGGTCATGGTCGT 59.025 57.895 0.00 0.00 0.00 4.34
3162 3526 1.448540 GCTCTGGTGGTCATGGTCG 60.449 63.158 0.00 0.00 0.00 4.79
3180 3544 2.284112 AGCATGGTGGCCTTTGGG 60.284 61.111 3.32 0.00 0.00 4.12
3184 3548 1.980772 GCTTGAGCATGGTGGCCTT 60.981 57.895 0.00 0.00 41.59 4.35
3267 3631 5.796935 CGAACATGGATTTCTCACATTTGTC 59.203 40.000 0.00 0.00 0.00 3.18
3290 3654 2.498892 GCTTGTTGCACTTTGCTCG 58.501 52.632 0.00 0.00 45.31 5.03
3386 3750 5.582269 CCACCATTATAACTGTCAGAGTGTG 59.418 44.000 6.91 2.69 34.02 3.82
3392 3756 3.531538 ACGCCACCATTATAACTGTCAG 58.468 45.455 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.