Multiple sequence alignment - TraesCS1D01G233400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G233400 chr1D 100.000 5019 0 0 1 5019 321926554 321921536 0.000000e+00 9269.0
1 TraesCS1D01G233400 chr1D 79.310 754 121 19 44 793 234443261 234443983 3.490000e-136 496.0
2 TraesCS1D01G233400 chr1D 85.652 230 29 3 69 297 298336467 298336241 6.490000e-59 239.0
3 TraesCS1D01G233400 chr1D 88.158 152 15 1 4871 5019 351251001 351251152 1.440000e-40 178.0
4 TraesCS1D01G233400 chr1B 95.536 2397 75 12 2128 4509 434565983 434563604 0.000000e+00 3805.0
5 TraesCS1D01G233400 chr1B 94.118 2057 83 15 44 2094 434568008 434565984 0.000000e+00 3094.0
6 TraesCS1D01G233400 chr1B 85.831 367 18 11 4496 4854 434562421 434562081 4.780000e-95 359.0
7 TraesCS1D01G233400 chr1B 76.543 648 101 18 44 686 309198916 309199517 1.760000e-79 307.0
8 TraesCS1D01G233400 chr1B 84.967 153 21 2 4013 4164 434564242 434564091 2.420000e-33 154.0
9 TraesCS1D01G233400 chr1A 92.565 2569 121 26 548 3099 405523038 405520523 0.000000e+00 3622.0
10 TraesCS1D01G233400 chr1A 92.959 1747 89 8 3112 4842 405518524 405516796 0.000000e+00 2514.0
11 TraesCS1D01G233400 chr1A 87.041 517 38 4 44 557 405561580 405561090 1.580000e-154 556.0
12 TraesCS1D01G233400 chr1A 86.335 161 19 1 4862 5019 302930731 302930891 6.680000e-39 172.0
13 TraesCS1D01G233400 chr1A 95.122 41 2 0 7 47 405561562 405561522 1.170000e-06 65.8
14 TraesCS1D01G233400 chr3D 79.138 719 102 25 44 757 512611142 512611817 2.130000e-123 453.0
15 TraesCS1D01G233400 chr3D 88.235 153 13 4 4871 5019 602344433 602344584 1.440000e-40 178.0
16 TraesCS1D01G233400 chr2B 78.036 774 131 24 44 809 666189599 666188857 7.660000e-123 451.0
17 TraesCS1D01G233400 chr3B 78.750 720 107 26 44 759 675160607 675159930 1.660000e-119 440.0
18 TraesCS1D01G233400 chr3B 90.000 110 8 2 1805 1913 442082482 442082589 6.780000e-29 139.0
19 TraesCS1D01G233400 chr5D 79.221 539 83 20 44 556 308169037 308169572 1.030000e-91 348.0
20 TraesCS1D01G233400 chr5D 76.984 504 109 7 294 793 95996113 95996613 1.060000e-71 281.0
21 TraesCS1D01G233400 chr5D 85.976 164 17 3 4862 5019 534015763 534015926 2.400000e-38 171.0
22 TraesCS1D01G233400 chr7A 85.654 237 30 3 44 279 443344402 443344169 3.880000e-61 246.0
23 TraesCS1D01G233400 chr6B 83.459 266 31 8 44 300 169169198 169168937 8.400000e-58 235.0
24 TraesCS1D01G233400 chr7B 85.345 232 26 5 55 281 517119225 517118997 3.020000e-57 233.0
25 TraesCS1D01G233400 chr6A 88.889 153 13 2 4871 5019 597670898 597671050 8.580000e-43 185.0
26 TraesCS1D01G233400 chr6A 88.158 152 15 1 4871 5019 132355543 132355392 1.440000e-40 178.0
27 TraesCS1D01G233400 chr4D 88.816 152 14 1 4871 5019 481594494 481594645 3.090000e-42 183.0
28 TraesCS1D01G233400 chr2A 87.342 158 17 1 4865 5019 776404907 776405064 1.440000e-40 178.0
29 TraesCS1D01G233400 chr2A 86.709 158 18 1 4865 5019 776430712 776430869 6.680000e-39 172.0
30 TraesCS1D01G233400 chr6D 91.667 60 4 1 579 638 277641487 277641545 1.160000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G233400 chr1D 321921536 321926554 5018 True 9269 9269 100.000 1 5019 1 chr1D.!!$R2 5018
1 TraesCS1D01G233400 chr1D 234443261 234443983 722 False 496 496 79.310 44 793 1 chr1D.!!$F1 749
2 TraesCS1D01G233400 chr1B 434562081 434568008 5927 True 1853 3805 90.113 44 4854 4 chr1B.!!$R1 4810
3 TraesCS1D01G233400 chr1B 309198916 309199517 601 False 307 307 76.543 44 686 1 chr1B.!!$F1 642
4 TraesCS1D01G233400 chr1A 405516796 405523038 6242 True 3068 3622 92.762 548 4842 2 chr1A.!!$R1 4294
5 TraesCS1D01G233400 chr3D 512611142 512611817 675 False 453 453 79.138 44 757 1 chr3D.!!$F1 713
6 TraesCS1D01G233400 chr2B 666188857 666189599 742 True 451 451 78.036 44 809 1 chr2B.!!$R1 765
7 TraesCS1D01G233400 chr3B 675159930 675160607 677 True 440 440 78.750 44 759 1 chr3B.!!$R1 715
8 TraesCS1D01G233400 chr5D 308169037 308169572 535 False 348 348 79.221 44 556 1 chr5D.!!$F2 512
9 TraesCS1D01G233400 chr5D 95996113 95996613 500 False 281 281 76.984 294 793 1 chr5D.!!$F1 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
566 659 0.036875 GGCTGGCTAAATAGGGCGAT 59.963 55.0 0.0 0.0 0.0 4.58 F
2520 2626 0.318360 TTGTACTCGTGGTGCTCGTG 60.318 55.0 0.0 0.0 0.0 4.35 F
3726 5833 0.583438 CCAAGAACGCACACTCACAG 59.417 55.0 0.0 0.0 0.0 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2522 2628 0.238289 AAATGCAAACTGACGAGGCG 59.762 50.0 0.0 0.0 0.0 5.52 R
3782 5889 0.317479 GTGGTGCTAGTCGAAGGTGT 59.683 55.0 0.0 0.0 0.0 4.16 R
4990 8303 0.038067 CATGGTTGCATGTGGTGGTG 60.038 55.0 0.0 0.0 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.910536 ATCGATCATAACAAGGAGTTCAAC 57.089 37.500 0.00 0.00 41.64 3.18
26 27 5.789521 TCGATCATAACAAGGAGTTCAACA 58.210 37.500 0.00 0.00 41.64 3.33
27 28 6.227522 TCGATCATAACAAGGAGTTCAACAA 58.772 36.000 0.00 0.00 41.64 2.83
28 29 6.708502 TCGATCATAACAAGGAGTTCAACAAA 59.291 34.615 0.00 0.00 41.64 2.83
29 30 6.797033 CGATCATAACAAGGAGTTCAACAAAC 59.203 38.462 0.00 0.00 41.64 2.93
40 41 5.173774 AGTTCAACAAACTAGCACACATG 57.826 39.130 0.00 0.00 46.55 3.21
41 42 4.640201 AGTTCAACAAACTAGCACACATGT 59.360 37.500 0.00 0.00 46.55 3.21
42 43 5.125417 AGTTCAACAAACTAGCACACATGTT 59.875 36.000 0.00 0.00 46.55 2.71
58 59 4.626604 CACATGTTTTCAACACAGCAACTT 59.373 37.500 0.00 0.00 45.50 2.66
95 104 5.630680 GGAGTTCAACAAATTAGCACACATG 59.369 40.000 0.00 0.00 0.00 3.21
96 105 6.147864 AGTTCAACAAATTAGCACACATGT 57.852 33.333 0.00 0.00 0.00 3.21
98 107 7.041107 AGTTCAACAAATTAGCACACATGTTT 58.959 30.769 0.00 0.00 0.00 2.83
101 110 4.691175 ACAAATTAGCACACATGTTTGCA 58.309 34.783 32.24 17.47 41.48 4.08
102 111 5.299148 ACAAATTAGCACACATGTTTGCAT 58.701 33.333 32.24 21.33 41.48 3.96
103 112 6.453943 ACAAATTAGCACACATGTTTGCATA 58.546 32.000 32.24 21.79 41.48 3.14
104 113 6.365789 ACAAATTAGCACACATGTTTGCATAC 59.634 34.615 32.24 9.08 41.48 2.39
105 114 5.902613 ATTAGCACACATGTTTGCATACT 57.097 34.783 32.24 17.87 41.48 2.12
106 115 7.389803 AATTAGCACACATGTTTGCATACTA 57.610 32.000 32.24 16.95 41.48 1.82
107 116 4.952262 AGCACACATGTTTGCATACTAG 57.048 40.909 32.24 5.44 41.48 2.57
108 117 4.326826 AGCACACATGTTTGCATACTAGT 58.673 39.130 32.24 12.29 41.48 2.57
109 118 5.487433 AGCACACATGTTTGCATACTAGTA 58.513 37.500 32.24 4.77 41.48 1.82
110 119 6.115446 AGCACACATGTTTGCATACTAGTAT 58.885 36.000 32.24 9.71 41.48 2.12
254 317 1.078778 ATCGGCGGTGTACAATGCA 60.079 52.632 18.91 0.00 0.00 3.96
255 318 0.463654 ATCGGCGGTGTACAATGCAT 60.464 50.000 18.91 0.00 0.00 3.96
256 319 0.175989 TCGGCGGTGTACAATGCATA 59.824 50.000 18.91 6.49 0.00 3.14
257 320 1.010580 CGGCGGTGTACAATGCATAA 58.989 50.000 18.91 0.00 0.00 1.90
258 321 1.267832 CGGCGGTGTACAATGCATAAC 60.268 52.381 18.91 0.00 0.00 1.89
259 322 1.740585 GGCGGTGTACAATGCATAACA 59.259 47.619 18.91 2.22 0.00 2.41
260 323 2.357637 GGCGGTGTACAATGCATAACAT 59.642 45.455 18.91 0.00 42.30 2.71
261 324 3.362295 GCGGTGTACAATGCATAACATG 58.638 45.455 13.98 0.00 39.60 3.21
262 325 3.791789 GCGGTGTACAATGCATAACATGG 60.792 47.826 13.98 3.18 39.60 3.66
263 326 3.376859 CGGTGTACAATGCATAACATGGT 59.623 43.478 0.00 0.00 45.39 3.55
264 327 4.495679 CGGTGTACAATGCATAACATGGTC 60.496 45.833 0.00 0.00 38.70 4.02
265 328 4.397730 GGTGTACAATGCATAACATGGTCA 59.602 41.667 0.00 0.00 38.70 4.02
266 329 5.331902 GTGTACAATGCATAACATGGTCAC 58.668 41.667 0.00 5.10 38.70 3.67
267 330 5.006386 TGTACAATGCATAACATGGTCACA 58.994 37.500 0.00 0.00 38.70 3.58
268 331 5.474876 TGTACAATGCATAACATGGTCACAA 59.525 36.000 0.00 0.00 38.70 3.33
269 332 5.465532 ACAATGCATAACATGGTCACAAA 57.534 34.783 0.00 0.00 38.70 2.83
270 333 5.851720 ACAATGCATAACATGGTCACAAAA 58.148 33.333 0.00 0.00 38.70 2.44
271 334 6.465948 ACAATGCATAACATGGTCACAAAAT 58.534 32.000 0.00 0.00 38.70 1.82
272 335 6.935771 ACAATGCATAACATGGTCACAAAATT 59.064 30.769 0.00 0.00 38.70 1.82
273 336 7.444792 ACAATGCATAACATGGTCACAAAATTT 59.555 29.630 0.00 0.00 38.70 1.82
274 337 8.933807 CAATGCATAACATGGTCACAAAATTTA 58.066 29.630 0.00 0.00 39.60 1.40
275 338 9.499479 AATGCATAACATGGTCACAAAATTTAA 57.501 25.926 0.00 0.00 39.60 1.52
276 339 8.304202 TGCATAACATGGTCACAAAATTTAAC 57.696 30.769 0.00 0.00 0.00 2.01
277 340 7.386299 TGCATAACATGGTCACAAAATTTAACC 59.614 33.333 0.00 0.00 0.00 2.85
278 341 7.386299 GCATAACATGGTCACAAAATTTAACCA 59.614 33.333 13.71 13.71 43.68 3.67
469 561 1.673337 GCACGACCCCAACTTACCC 60.673 63.158 0.00 0.00 0.00 3.69
566 659 0.036875 GGCTGGCTAAATAGGGCGAT 59.963 55.000 0.00 0.00 0.00 4.58
601 694 3.969250 GACGCCAATTCCTCCCGCA 62.969 63.158 0.00 0.00 0.00 5.69
772 866 2.459060 TCGTGCGGACCAAAATTCTA 57.541 45.000 0.00 0.00 0.00 2.10
797 891 4.023291 ACAGGTCAGACAACCAAACAATT 58.977 39.130 2.17 0.00 42.12 2.32
798 892 4.097892 ACAGGTCAGACAACCAAACAATTC 59.902 41.667 2.17 0.00 42.12 2.17
1293 1394 2.351111 GCTTATGTGCTTCTCTGTCTGC 59.649 50.000 0.00 0.00 0.00 4.26
1402 1503 2.124736 TGCGCTCCAGGTAATGCC 60.125 61.111 9.73 0.00 37.58 4.40
1425 1526 2.159028 TCCGTCGGACATTGCATATTCA 60.159 45.455 10.71 0.00 0.00 2.57
1711 1814 7.671302 ACTTTCAAGTAATGCTAGAGAACTCA 58.329 34.615 0.00 0.00 37.52 3.41
1747 1851 9.088512 CGTAATCTAGTATATTCATGGAAAGGC 57.911 37.037 0.00 0.00 0.00 4.35
2109 2215 4.130286 TCACCCAACCAAATGTTCAAAC 57.870 40.909 0.00 0.00 34.00 2.93
2220 2326 7.902917 TCGAAAATCAATGTTTAAGACTATGCG 59.097 33.333 0.00 0.00 0.00 4.73
2227 2333 7.277098 TCAATGTTTAAGACTATGCGGTACTTC 59.723 37.037 0.00 0.00 0.00 3.01
2262 2368 8.325421 TCGTATTGTAAATTTTCACCAAGCTA 57.675 30.769 0.00 0.00 0.00 3.32
2266 2372 6.909550 TGTAAATTTTCACCAAGCTACCAT 57.090 33.333 0.00 0.00 0.00 3.55
2516 2622 5.351465 CAGATTATTTTGTACTCGTGGTGCT 59.649 40.000 0.00 0.00 0.00 4.40
2517 2623 5.581085 AGATTATTTTGTACTCGTGGTGCTC 59.419 40.000 0.00 0.00 0.00 4.26
2518 2624 1.493772 TTTTGTACTCGTGGTGCTCG 58.506 50.000 0.00 0.00 0.00 5.03
2519 2625 0.386476 TTTGTACTCGTGGTGCTCGT 59.614 50.000 0.00 0.00 0.00 4.18
2520 2626 0.318360 TTGTACTCGTGGTGCTCGTG 60.318 55.000 0.00 0.00 0.00 4.35
2521 2627 1.443872 GTACTCGTGGTGCTCGTGG 60.444 63.158 0.00 0.00 0.00 4.94
2522 2628 3.277211 TACTCGTGGTGCTCGTGGC 62.277 63.158 0.00 0.00 42.22 5.01
2539 2645 2.680913 GCGCCTCGTCAGTTTGCAT 61.681 57.895 0.00 0.00 0.00 3.96
2781 2890 7.956420 AGAAACAGTATTTACACGATTGTCA 57.044 32.000 0.00 0.00 37.15 3.58
2806 2915 9.889128 CAAATGTTATTCATCCCCATTTTAACT 57.111 29.630 0.00 0.00 34.46 2.24
2822 2931 6.441093 TTTTAACTGCTCCATGATAAGCTG 57.559 37.500 15.14 15.14 41.58 4.24
2946 3055 9.142515 CACATGTAAATCAATTTAGCATGTGTT 57.857 29.630 29.88 16.72 46.95 3.32
2961 3070 1.268999 TGTGTTTGTCCTCAATTGCGC 60.269 47.619 0.00 0.00 33.32 6.09
2985 3094 8.362639 CGCCTTTCTAGTAATAATTGTACCCTA 58.637 37.037 0.00 0.00 0.00 3.53
3141 5239 2.416747 CGCTGATTCTTGTGACCTTGA 58.583 47.619 0.00 0.00 0.00 3.02
3177 5283 8.654230 TTCTTCTGAAATCTGAAATCCGATAG 57.346 34.615 4.62 0.00 34.24 2.08
3178 5284 6.703607 TCTTCTGAAATCTGAAATCCGATAGC 59.296 38.462 4.62 0.00 34.24 2.97
3186 5292 2.995939 TGAAATCCGATAGCGATCATGC 59.004 45.455 0.00 0.00 40.82 4.06
3726 5833 0.583438 CCAAGAACGCACACTCACAG 59.417 55.000 0.00 0.00 0.00 3.66
3727 5834 1.290203 CAAGAACGCACACTCACAGT 58.710 50.000 0.00 0.00 0.00 3.55
3745 5852 3.260884 ACAGTATCCACATTGAACGGTCT 59.739 43.478 0.33 0.00 0.00 3.85
3782 5889 1.605165 GGGTTGATTCCCGTTGGCA 60.605 57.895 0.00 0.00 37.93 4.92
4006 6113 5.462240 TCTGACCTGATCTGGACAATATCT 58.538 41.667 24.13 0.00 32.05 1.98
4035 6142 4.089065 GCACTGAGTTTTTCGATGCATTTC 59.911 41.667 0.00 0.00 0.00 2.17
4039 6146 6.206634 ACTGAGTTTTTCGATGCATTTCCTAA 59.793 34.615 0.00 0.00 0.00 2.69
4041 6148 7.601856 TGAGTTTTTCGATGCATTTCCTAATT 58.398 30.769 0.00 0.00 0.00 1.40
4067 6174 5.589192 ACAATACTTGTATGAGCTACGGTC 58.411 41.667 0.00 0.00 43.27 4.79
4100 6207 3.859386 CACATCGAACATCGTTGATGAGA 59.141 43.478 13.36 9.47 42.09 3.27
4113 6220 6.280643 TCGTTGATGAGAACCAGGTTATATG 58.719 40.000 4.25 0.00 0.00 1.78
4151 6258 5.934781 ACCTGATTTGGACAATATCTCTCC 58.065 41.667 0.00 0.00 0.00 3.71
4199 6306 3.308595 CGTTTGAGCTATCGCCAATTGTA 59.691 43.478 4.43 0.00 36.60 2.41
4247 6354 2.196749 CATCCAGCAGTGACGTGATAC 58.803 52.381 0.00 0.00 0.00 2.24
4440 6548 6.076092 CGTTCAAGCAAACTTCTCTTTTTACG 60.076 38.462 0.00 0.00 32.29 3.18
4460 6568 2.352030 CGCACCTCTTGTACTTCGGTAA 60.352 50.000 0.00 0.00 31.63 2.85
4503 6612 2.762887 CAGAGCTCCATCCAACTAGACA 59.237 50.000 10.93 0.00 0.00 3.41
4589 7895 5.280521 CCTGGGTCTAGGTAAGATGTTTTGT 60.281 44.000 0.00 0.00 36.36 2.83
4614 7920 8.867935 GTTTGATGGTATCAGATATTCAGATCG 58.132 37.037 0.00 0.00 40.94 3.69
4653 7959 4.218417 AGCATGACGATTTGCTAGGTTTTT 59.782 37.500 0.00 0.00 46.92 1.94
4720 8026 6.257169 GTGAGAAACACCGATTATAACGAG 57.743 41.667 8.43 4.63 43.05 4.18
4738 8044 6.598753 AACGAGGAAAATGGATTATGTACG 57.401 37.500 0.00 0.00 0.00 3.67
4754 8066 3.787785 TGTACGTGCATACCATTCGAAT 58.212 40.909 4.39 4.39 0.00 3.34
4780 8092 1.518367 TTGGACAGGGGAAGAGTTGT 58.482 50.000 0.00 0.00 0.00 3.32
4790 8102 0.321996 GAAGAGTTGTTCTCCCCGCT 59.678 55.000 0.00 0.00 43.71 5.52
4854 8167 8.129496 TGGATCATATATACCTAGTTTTCGCA 57.871 34.615 0.00 0.00 0.00 5.10
4855 8168 8.590204 TGGATCATATATACCTAGTTTTCGCAA 58.410 33.333 0.00 0.00 0.00 4.85
4856 8169 9.431887 GGATCATATATACCTAGTTTTCGCAAA 57.568 33.333 0.00 0.00 0.00 3.68
4933 8246 2.418692 CATGCAAACATGCCACATTGT 58.581 42.857 0.00 0.00 46.75 2.71
4934 8247 2.151881 TGCAAACATGCCACATTGTC 57.848 45.000 0.00 0.00 0.00 3.18
4935 8248 1.411612 TGCAAACATGCCACATTGTCA 59.588 42.857 0.00 0.00 0.00 3.58
4936 8249 2.037381 TGCAAACATGCCACATTGTCAT 59.963 40.909 0.00 0.00 0.00 3.06
4937 8250 3.257624 TGCAAACATGCCACATTGTCATA 59.742 39.130 0.00 0.00 0.00 2.15
4938 8251 3.613737 GCAAACATGCCACATTGTCATAC 59.386 43.478 0.00 0.00 0.00 2.39
4939 8252 4.807443 CAAACATGCCACATTGTCATACA 58.193 39.130 0.00 0.00 0.00 2.29
4940 8253 5.228665 CAAACATGCCACATTGTCATACAA 58.771 37.500 0.00 0.00 42.95 2.41
4942 8255 5.664294 ACATGCCACATTGTCATACAATT 57.336 34.783 2.59 0.00 45.80 2.32
4943 8256 6.772360 ACATGCCACATTGTCATACAATTA 57.228 33.333 2.59 0.00 45.80 1.40
4944 8257 6.563422 ACATGCCACATTGTCATACAATTAC 58.437 36.000 2.59 0.00 45.80 1.89
4945 8258 5.228579 TGCCACATTGTCATACAATTACG 57.771 39.130 2.59 0.00 45.80 3.18
4946 8259 4.938226 TGCCACATTGTCATACAATTACGA 59.062 37.500 2.59 0.00 45.80 3.43
4947 8260 5.412904 TGCCACATTGTCATACAATTACGAA 59.587 36.000 2.59 0.00 45.80 3.85
4948 8261 6.094742 TGCCACATTGTCATACAATTACGAAT 59.905 34.615 2.59 0.00 45.80 3.34
4949 8262 6.414694 GCCACATTGTCATACAATTACGAATG 59.585 38.462 2.59 0.00 45.80 2.67
4950 8263 6.912051 CCACATTGTCATACAATTACGAATGG 59.088 38.462 2.59 2.04 45.80 3.16
4951 8264 6.912051 CACATTGTCATACAATTACGAATGGG 59.088 38.462 2.59 0.00 45.80 4.00
4952 8265 6.826231 ACATTGTCATACAATTACGAATGGGA 59.174 34.615 2.59 0.00 45.80 4.37
4953 8266 7.502226 ACATTGTCATACAATTACGAATGGGAT 59.498 33.333 2.59 0.00 45.80 3.85
4954 8267 8.998377 CATTGTCATACAATTACGAATGGGATA 58.002 33.333 2.59 0.00 45.80 2.59
4955 8268 8.966069 TTGTCATACAATTACGAATGGGATAA 57.034 30.769 0.00 0.00 32.34 1.75
4956 8269 8.601845 TGTCATACAATTACGAATGGGATAAG 57.398 34.615 0.00 0.00 0.00 1.73
4957 8270 8.425703 TGTCATACAATTACGAATGGGATAAGA 58.574 33.333 0.00 0.00 0.00 2.10
4958 8271 8.709646 GTCATACAATTACGAATGGGATAAGAC 58.290 37.037 0.00 0.00 0.00 3.01
4959 8272 7.876068 TCATACAATTACGAATGGGATAAGACC 59.124 37.037 0.00 0.00 0.00 3.85
4970 8283 3.567478 GGATAAGACCCAGCTCAACAT 57.433 47.619 0.00 0.00 0.00 2.71
4971 8284 3.209410 GGATAAGACCCAGCTCAACATG 58.791 50.000 0.00 0.00 0.00 3.21
4972 8285 2.113860 TAAGACCCAGCTCAACATGC 57.886 50.000 0.00 0.00 0.00 4.06
4973 8286 0.610232 AAGACCCAGCTCAACATGCC 60.610 55.000 0.00 0.00 0.00 4.40
4974 8287 1.303561 GACCCAGCTCAACATGCCA 60.304 57.895 0.00 0.00 0.00 4.92
4975 8288 0.682209 GACCCAGCTCAACATGCCAT 60.682 55.000 0.00 0.00 0.00 4.40
4976 8289 0.968901 ACCCAGCTCAACATGCCATG 60.969 55.000 2.40 2.40 0.00 3.66
4977 8290 1.141019 CCAGCTCAACATGCCATGC 59.859 57.895 4.17 0.00 0.00 4.06
4978 8291 1.600511 CCAGCTCAACATGCCATGCA 61.601 55.000 4.17 0.00 44.86 3.96
4989 8302 2.747396 TGCCATGCATGAAAAAGACC 57.253 45.000 28.31 6.05 31.71 3.85
4990 8303 1.275856 TGCCATGCATGAAAAAGACCC 59.724 47.619 28.31 5.09 31.71 4.46
4991 8304 1.275856 GCCATGCATGAAAAAGACCCA 59.724 47.619 28.31 0.00 0.00 4.51
4992 8305 2.932187 GCCATGCATGAAAAAGACCCAC 60.932 50.000 28.31 0.00 0.00 4.61
4993 8306 2.354003 CCATGCATGAAAAAGACCCACC 60.354 50.000 28.31 0.00 0.00 4.61
4994 8307 2.079170 TGCATGAAAAAGACCCACCA 57.921 45.000 0.00 0.00 0.00 4.17
4995 8308 1.686052 TGCATGAAAAAGACCCACCAC 59.314 47.619 0.00 0.00 0.00 4.16
4996 8309 1.000843 GCATGAAAAAGACCCACCACC 59.999 52.381 0.00 0.00 0.00 4.61
4997 8310 2.315176 CATGAAAAAGACCCACCACCA 58.685 47.619 0.00 0.00 0.00 4.17
4998 8311 1.770294 TGAAAAAGACCCACCACCAC 58.230 50.000 0.00 0.00 0.00 4.16
4999 8312 1.006043 TGAAAAAGACCCACCACCACA 59.994 47.619 0.00 0.00 0.00 4.17
5000 8313 2.316108 GAAAAAGACCCACCACCACAT 58.684 47.619 0.00 0.00 0.00 3.21
5001 8314 1.703411 AAAAGACCCACCACCACATG 58.297 50.000 0.00 0.00 0.00 3.21
5002 8315 0.827507 AAAGACCCACCACCACATGC 60.828 55.000 0.00 0.00 0.00 4.06
5003 8316 2.005606 AAGACCCACCACCACATGCA 62.006 55.000 0.00 0.00 0.00 3.96
5004 8317 1.530419 GACCCACCACCACATGCAA 60.530 57.895 0.00 0.00 0.00 4.08
5005 8318 1.805428 GACCCACCACCACATGCAAC 61.805 60.000 0.00 0.00 0.00 4.17
5006 8319 2.573083 CCCACCACCACATGCAACC 61.573 63.158 0.00 0.00 0.00 3.77
5007 8320 1.831726 CCACCACCACATGCAACCA 60.832 57.895 0.00 0.00 0.00 3.67
5008 8321 1.186917 CCACCACCACATGCAACCAT 61.187 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.706607 TGTTGAACTCCTTGTTATGATCGATAG 59.293 37.037 0.00 0.00 39.30 2.08
1 2 7.552459 TGTTGAACTCCTTGTTATGATCGATA 58.448 34.615 0.00 0.00 39.30 2.92
2 3 6.406370 TGTTGAACTCCTTGTTATGATCGAT 58.594 36.000 0.00 0.00 39.30 3.59
3 4 5.789521 TGTTGAACTCCTTGTTATGATCGA 58.210 37.500 0.00 0.00 39.30 3.59
4 5 6.480524 TTGTTGAACTCCTTGTTATGATCG 57.519 37.500 0.00 0.00 39.30 3.69
5 6 7.875971 AGTTTGTTGAACTCCTTGTTATGATC 58.124 34.615 0.00 0.00 45.40 2.92
6 7 7.823745 AGTTTGTTGAACTCCTTGTTATGAT 57.176 32.000 0.00 0.00 45.40 2.45
7 8 7.041372 GCTAGTTTGTTGAACTCCTTGTTATGA 60.041 37.037 0.00 0.00 45.40 2.15
8 9 7.078228 GCTAGTTTGTTGAACTCCTTGTTATG 58.922 38.462 0.00 0.00 45.40 1.90
9 10 6.770785 TGCTAGTTTGTTGAACTCCTTGTTAT 59.229 34.615 0.00 0.00 45.40 1.89
10 11 6.037830 GTGCTAGTTTGTTGAACTCCTTGTTA 59.962 38.462 0.00 0.00 45.40 2.41
11 12 4.947388 TGCTAGTTTGTTGAACTCCTTGTT 59.053 37.500 0.00 0.00 45.40 2.83
12 13 4.335594 GTGCTAGTTTGTTGAACTCCTTGT 59.664 41.667 0.00 0.00 45.40 3.16
13 14 4.335315 TGTGCTAGTTTGTTGAACTCCTTG 59.665 41.667 0.00 0.00 45.40 3.61
14 15 4.335594 GTGTGCTAGTTTGTTGAACTCCTT 59.664 41.667 0.00 0.00 45.40 3.36
15 16 3.877508 GTGTGCTAGTTTGTTGAACTCCT 59.122 43.478 0.00 0.00 45.40 3.69
16 17 3.625764 TGTGTGCTAGTTTGTTGAACTCC 59.374 43.478 0.00 0.00 45.40 3.85
17 18 4.875544 TGTGTGCTAGTTTGTTGAACTC 57.124 40.909 0.00 0.00 45.40 3.01
19 20 4.920376 ACATGTGTGCTAGTTTGTTGAAC 58.080 39.130 0.00 0.00 38.58 3.18
20 21 5.574891 AACATGTGTGCTAGTTTGTTGAA 57.425 34.783 0.00 0.00 0.00 2.69
21 22 5.574891 AAACATGTGTGCTAGTTTGTTGA 57.425 34.783 0.00 0.00 33.35 3.18
22 23 5.804473 TGAAAACATGTGTGCTAGTTTGTTG 59.196 36.000 0.00 0.00 34.70 3.33
23 24 5.960113 TGAAAACATGTGTGCTAGTTTGTT 58.040 33.333 0.00 0.00 34.70 2.83
24 25 5.574891 TGAAAACATGTGTGCTAGTTTGT 57.425 34.783 0.00 0.00 34.70 2.83
41 42 9.809096 TTATGATTTAAGTTGCTGTGTTGAAAA 57.191 25.926 0.00 0.00 0.00 2.29
42 43 9.243637 GTTATGATTTAAGTTGCTGTGTTGAAA 57.756 29.630 0.00 0.00 0.00 2.69
84 85 5.937540 ACTAGTATGCAAACATGTGTGCTAA 59.062 36.000 34.76 22.72 41.48 3.09
95 104 8.812147 TGTGCAGTATATACTAGTATGCAAAC 57.188 34.615 23.08 15.22 33.78 2.93
96 105 9.639601 GATGTGCAGTATATACTAGTATGCAAA 57.360 33.333 23.08 19.94 33.78 3.68
98 107 8.348285 TGATGTGCAGTATATACTAGTATGCA 57.652 34.615 23.09 21.08 34.13 3.96
101 110 9.025041 TGCTTGATGTGCAGTATATACTAGTAT 57.975 33.333 19.07 19.07 35.31 2.12
102 111 8.404107 TGCTTGATGTGCAGTATATACTAGTA 57.596 34.615 15.03 4.77 35.31 1.82
103 112 7.290110 TGCTTGATGTGCAGTATATACTAGT 57.710 36.000 15.03 0.00 35.31 2.57
104 113 9.295214 GTATGCTTGATGTGCAGTATATACTAG 57.705 37.037 15.03 10.63 44.04 2.57
105 114 9.025041 AGTATGCTTGATGTGCAGTATATACTA 57.975 33.333 15.03 0.31 44.04 1.82
106 115 7.901029 AGTATGCTTGATGTGCAGTATATACT 58.099 34.615 9.71 9.71 44.04 2.12
107 116 9.077674 GTAGTATGCTTGATGTGCAGTATATAC 57.922 37.037 4.60 4.60 44.04 1.47
108 117 8.251026 GGTAGTATGCTTGATGTGCAGTATATA 58.749 37.037 0.00 0.00 44.04 0.86
109 118 7.099764 GGTAGTATGCTTGATGTGCAGTATAT 58.900 38.462 0.00 0.00 44.04 0.86
110 119 6.041523 TGGTAGTATGCTTGATGTGCAGTATA 59.958 38.462 0.00 0.00 44.04 1.47
269 332 9.407380 TCTGTGAGCATGTTATATGGTTAAATT 57.593 29.630 0.00 0.00 0.00 1.82
270 333 8.978874 TCTGTGAGCATGTTATATGGTTAAAT 57.021 30.769 0.00 0.00 0.00 1.40
271 334 8.978874 ATCTGTGAGCATGTTATATGGTTAAA 57.021 30.769 0.00 0.00 0.00 1.52
272 335 8.432013 AGATCTGTGAGCATGTTATATGGTTAA 58.568 33.333 0.00 0.00 0.00 2.01
273 336 7.966812 AGATCTGTGAGCATGTTATATGGTTA 58.033 34.615 0.00 0.00 0.00 2.85
274 337 6.835174 AGATCTGTGAGCATGTTATATGGTT 58.165 36.000 0.00 0.00 0.00 3.67
275 338 6.430962 AGATCTGTGAGCATGTTATATGGT 57.569 37.500 0.00 0.00 0.00 3.55
276 339 7.332926 GGTTAGATCTGTGAGCATGTTATATGG 59.667 40.741 5.18 0.00 0.00 2.74
277 340 7.062722 CGGTTAGATCTGTGAGCATGTTATATG 59.937 40.741 5.18 0.00 0.00 1.78
278 341 7.093354 CGGTTAGATCTGTGAGCATGTTATAT 58.907 38.462 5.18 0.00 0.00 0.86
288 351 5.500645 TGTGATACGGTTAGATCTGTGAG 57.499 43.478 5.18 0.00 0.00 3.51
537 630 0.037326 TTAGCCAGCCTCACTTCACG 60.037 55.000 0.00 0.00 0.00 4.35
566 659 0.323629 GTCACCTCCCACCGAATCAA 59.676 55.000 0.00 0.00 0.00 2.57
601 694 1.462791 CGCGTGTTTTCGAAAAAGCT 58.537 45.000 28.18 0.00 0.00 3.74
772 866 4.787551 TGTTTGGTTGTCTGACCTGTATT 58.212 39.130 5.17 0.00 40.47 1.89
813 907 2.679837 CGCAACAAGCCTAATCATGTCT 59.320 45.455 0.00 0.00 41.38 3.41
843 937 1.061131 CATCAATGACGCGTCTGGTTC 59.939 52.381 36.27 13.52 0.00 3.62
845 939 0.246360 TCATCAATGACGCGTCTGGT 59.754 50.000 36.27 22.87 0.00 4.00
846 940 1.358877 TTCATCAATGACGCGTCTGG 58.641 50.000 36.27 25.25 36.36 3.86
1402 1503 1.864565 TATGCAATGTCCGACGGATG 58.135 50.000 21.53 15.53 32.73 3.51
1425 1526 2.665185 GGCCGACAGACAAACGCT 60.665 61.111 0.00 0.00 0.00 5.07
1457 1558 1.303561 TTCCTGTGCACATCCCTGC 60.304 57.895 22.00 0.00 37.70 4.85
1569 1670 6.172136 AGCAGAATAGAGATTGCACTACAT 57.828 37.500 0.00 0.00 38.97 2.29
1747 1851 4.857871 TCACTTCCGCAAATTCTAATCG 57.142 40.909 0.00 0.00 0.00 3.34
1790 1894 8.903820 GGAAAGGCAAACAGTCACTATAAATAT 58.096 33.333 0.00 0.00 0.00 1.28
2088 2194 3.118592 GGTTTGAACATTTGGTTGGGTGA 60.119 43.478 0.00 0.00 40.63 4.02
2137 2243 3.912528 TCTCCTAGATCCCAATCCCATTG 59.087 47.826 0.00 0.00 39.94 2.82
2197 2303 7.826690 ACCGCATAGTCTTAAACATTGATTTT 58.173 30.769 0.00 0.00 0.00 1.82
2220 2326 6.092259 ACAATACGATGCTTTGAAGAAGTACC 59.908 38.462 0.00 0.00 0.00 3.34
2262 2368 5.911752 TGTATCTGCACAAAAACAAATGGT 58.088 33.333 0.00 0.00 0.00 3.55
2266 2372 6.166279 TGGTTTGTATCTGCACAAAAACAAA 58.834 32.000 3.19 3.62 46.81 2.83
2493 2599 5.488341 AGCACCACGAGTACAAAATAATCT 58.512 37.500 0.00 0.00 0.00 2.40
2518 2624 2.665185 AAACTGACGAGGCGCCAC 60.665 61.111 31.54 23.03 0.00 5.01
2519 2625 2.664851 CAAACTGACGAGGCGCCA 60.665 61.111 31.54 6.15 0.00 5.69
2520 2626 4.090057 GCAAACTGACGAGGCGCC 62.090 66.667 21.89 21.89 0.00 6.53
2521 2627 2.187599 AATGCAAACTGACGAGGCGC 62.188 55.000 0.00 0.00 0.00 6.53
2522 2628 0.238289 AAATGCAAACTGACGAGGCG 59.762 50.000 0.00 0.00 0.00 5.52
2523 2629 2.422276 AAAATGCAAACTGACGAGGC 57.578 45.000 0.00 0.00 0.00 4.70
2524 2630 4.024048 ACTGTAAAATGCAAACTGACGAGG 60.024 41.667 0.00 0.00 0.00 4.63
2539 2645 1.144913 AGCCAAGGGAGCACTGTAAAA 59.855 47.619 0.00 0.00 0.00 1.52
2773 2882 6.183360 TGGGGATGAATAACATTTGACAATCG 60.183 38.462 0.00 0.00 39.56 3.34
2781 2890 9.889128 CAGTTAAAATGGGGATGAATAACATTT 57.111 29.630 0.00 0.00 41.84 2.32
2806 2915 1.211212 AGTGCAGCTTATCATGGAGCA 59.789 47.619 15.61 0.00 41.31 4.26
2822 2931 2.280708 GCATGAATTGAATTCGCAGTGC 59.719 45.455 12.72 14.61 42.15 4.40
2946 3055 1.269448 GAAAGGCGCAATTGAGGACAA 59.731 47.619 10.83 0.00 40.42 3.18
2985 3094 7.986085 AGTGCTGTTCTTTTGTTCATATAGT 57.014 32.000 0.00 0.00 0.00 2.12
3060 3169 5.443283 AGAAAATATCATCAGCTGCCTCAA 58.557 37.500 9.47 0.00 0.00 3.02
3177 5283 4.849926 CAGCATAATAACTTGCATGATCGC 59.150 41.667 6.60 0.00 41.35 4.58
3178 5284 6.232139 TCAGCATAATAACTTGCATGATCG 57.768 37.500 6.60 0.00 41.35 3.69
3295 5402 7.631717 AGATGGAATTAGTTTCAAGTAAGGC 57.368 36.000 0.00 0.00 35.94 4.35
3359 5466 2.390225 ATTTTGGTGCCCTGTGGTTA 57.610 45.000 0.00 0.00 0.00 2.85
3726 5833 3.596214 ACAGACCGTTCAATGTGGATAC 58.404 45.455 0.00 0.00 0.00 2.24
3727 5834 3.973206 ACAGACCGTTCAATGTGGATA 57.027 42.857 0.00 0.00 0.00 2.59
3745 5852 3.579302 CAGTGGGGGCCCTCAACA 61.579 66.667 30.93 15.60 36.94 3.33
3782 5889 0.317479 GTGGTGCTAGTCGAAGGTGT 59.683 55.000 0.00 0.00 0.00 4.16
3811 5918 3.842436 ACTTACCTAAATTCCACCGGAGT 59.158 43.478 9.46 0.00 31.21 3.85
4006 6113 1.872237 CGAAAAACTCAGTGCCGGAGA 60.872 52.381 5.05 0.00 36.26 3.71
4067 6174 4.777140 TGTTCGATGTGCTAATCAATCG 57.223 40.909 0.00 0.00 0.00 3.34
4100 6207 3.118408 TCTGAAGCGCATATAACCTGGTT 60.118 43.478 17.44 17.44 0.00 3.67
4113 6220 1.005340 CAGGTCAGAATCTGAAGCGC 58.995 55.000 15.28 0.00 42.46 5.92
4247 6354 5.295431 TGAAATTCTAACACGCCAGAATG 57.705 39.130 0.00 0.00 39.91 2.67
4440 6548 3.308438 TTACCGAAGTACAAGAGGTGC 57.692 47.619 11.07 0.00 36.49 5.01
4460 6568 8.473358 TCTGAAATGAATATGCAAATCCAGAT 57.527 30.769 0.00 0.00 0.00 2.90
4503 6612 1.134521 TCGTGTCTCTTGTGGCTTGTT 60.135 47.619 0.00 0.00 0.00 2.83
4589 7895 8.588472 ACGATCTGAATATCTGATACCATCAAA 58.412 33.333 0.00 0.00 39.11 2.69
4614 7920 3.118261 TCATGCTCCTGACCAAATCCTAC 60.118 47.826 0.00 0.00 0.00 3.18
4720 8026 5.493133 TGCACGTACATAATCCATTTTCC 57.507 39.130 0.00 0.00 0.00 3.13
4738 8044 6.704512 AAACAAAATTCGAATGGTATGCAC 57.295 33.333 12.25 0.00 0.00 4.57
4754 8066 3.704061 CTCTTCCCCTGTCCAAAACAAAA 59.296 43.478 0.00 0.00 37.45 2.44
4780 8092 1.003355 CTTGCAGAAGCGGGGAGAA 60.003 57.895 0.00 0.00 46.23 2.87
4910 8223 9.828698 ATGACAATGTGGCATGTTTGCATGTTA 62.829 37.037 9.00 0.00 46.11 2.41
4912 8225 7.763469 ATGACAATGTGGCATGTTTGCATGT 62.763 40.000 9.00 0.00 46.11 3.21
4913 8226 5.390821 ATGACAATGTGGCATGTTTGCATG 61.391 41.667 0.00 3.45 46.11 4.06
4914 8227 3.307129 ATGACAATGTGGCATGTTTGCAT 60.307 39.130 0.00 1.62 46.11 3.96
4915 8228 2.037381 ATGACAATGTGGCATGTTTGCA 59.963 40.909 0.00 0.00 46.11 4.08
4916 8229 2.690786 ATGACAATGTGGCATGTTTGC 58.309 42.857 0.00 0.00 46.11 3.68
4930 8243 8.966069 TTATCCCATTCGTAATTGTATGACAA 57.034 30.769 0.00 0.00 42.95 3.18
4931 8244 8.425703 TCTTATCCCATTCGTAATTGTATGACA 58.574 33.333 0.00 0.00 0.00 3.58
4932 8245 8.709646 GTCTTATCCCATTCGTAATTGTATGAC 58.290 37.037 0.00 0.00 0.00 3.06
4933 8246 7.876068 GGTCTTATCCCATTCGTAATTGTATGA 59.124 37.037 0.00 0.00 0.00 2.15
4934 8247 7.119262 GGGTCTTATCCCATTCGTAATTGTATG 59.881 40.741 0.00 0.00 46.30 2.39
4935 8248 7.166167 GGGTCTTATCCCATTCGTAATTGTAT 58.834 38.462 0.00 0.00 46.30 2.29
4936 8249 6.527423 GGGTCTTATCCCATTCGTAATTGTA 58.473 40.000 0.00 0.00 46.30 2.41
4937 8250 5.374071 GGGTCTTATCCCATTCGTAATTGT 58.626 41.667 0.00 0.00 46.30 2.71
4938 8251 5.941948 GGGTCTTATCCCATTCGTAATTG 57.058 43.478 0.00 0.00 46.30 2.32
4950 8263 3.209410 CATGTTGAGCTGGGTCTTATCC 58.791 50.000 0.00 0.00 0.00 2.59
4951 8264 2.615912 GCATGTTGAGCTGGGTCTTATC 59.384 50.000 0.00 0.00 0.00 1.75
4952 8265 2.648059 GCATGTTGAGCTGGGTCTTAT 58.352 47.619 0.00 0.00 0.00 1.73
4953 8266 1.340017 GGCATGTTGAGCTGGGTCTTA 60.340 52.381 0.00 0.00 0.00 2.10
4954 8267 0.610232 GGCATGTTGAGCTGGGTCTT 60.610 55.000 0.00 0.00 0.00 3.01
4955 8268 1.001641 GGCATGTTGAGCTGGGTCT 60.002 57.895 0.00 0.00 0.00 3.85
4956 8269 0.682209 ATGGCATGTTGAGCTGGGTC 60.682 55.000 0.00 0.00 0.00 4.46
4957 8270 0.968901 CATGGCATGTTGAGCTGGGT 60.969 55.000 19.32 0.00 0.00 4.51
4958 8271 1.813859 CATGGCATGTTGAGCTGGG 59.186 57.895 19.32 0.00 0.00 4.45
4959 8272 1.141019 GCATGGCATGTTGAGCTGG 59.859 57.895 26.94 0.28 0.00 4.85
4960 8273 1.887301 TGCATGGCATGTTGAGCTG 59.113 52.632 26.94 2.60 31.71 4.24
4961 8274 4.426971 TGCATGGCATGTTGAGCT 57.573 50.000 26.94 0.00 31.71 4.09
4970 8283 1.275856 GGGTCTTTTTCATGCATGGCA 59.724 47.619 25.97 10.93 44.86 4.92
4971 8284 1.275856 TGGGTCTTTTTCATGCATGGC 59.724 47.619 25.97 0.78 0.00 4.40
4972 8285 2.354003 GGTGGGTCTTTTTCATGCATGG 60.354 50.000 25.97 10.04 0.00 3.66
4973 8286 2.299582 TGGTGGGTCTTTTTCATGCATG 59.700 45.455 21.07 21.07 0.00 4.06
4974 8287 2.299867 GTGGTGGGTCTTTTTCATGCAT 59.700 45.455 0.00 0.00 0.00 3.96
4975 8288 1.686052 GTGGTGGGTCTTTTTCATGCA 59.314 47.619 0.00 0.00 0.00 3.96
4976 8289 1.000843 GGTGGTGGGTCTTTTTCATGC 59.999 52.381 0.00 0.00 0.00 4.06
4977 8290 2.035832 GTGGTGGTGGGTCTTTTTCATG 59.964 50.000 0.00 0.00 0.00 3.07
4978 8291 2.316108 GTGGTGGTGGGTCTTTTTCAT 58.684 47.619 0.00 0.00 0.00 2.57
4979 8292 1.006043 TGTGGTGGTGGGTCTTTTTCA 59.994 47.619 0.00 0.00 0.00 2.69
4980 8293 1.770294 TGTGGTGGTGGGTCTTTTTC 58.230 50.000 0.00 0.00 0.00 2.29
4981 8294 2.038659 CATGTGGTGGTGGGTCTTTTT 58.961 47.619 0.00 0.00 0.00 1.94
4982 8295 1.703411 CATGTGGTGGTGGGTCTTTT 58.297 50.000 0.00 0.00 0.00 2.27
4983 8296 0.827507 GCATGTGGTGGTGGGTCTTT 60.828 55.000 0.00 0.00 0.00 2.52
4984 8297 1.228552 GCATGTGGTGGTGGGTCTT 60.229 57.895 0.00 0.00 0.00 3.01
4985 8298 2.005606 TTGCATGTGGTGGTGGGTCT 62.006 55.000 0.00 0.00 0.00 3.85
4986 8299 1.530419 TTGCATGTGGTGGTGGGTC 60.530 57.895 0.00 0.00 0.00 4.46
4987 8300 1.832167 GTTGCATGTGGTGGTGGGT 60.832 57.895 0.00 0.00 0.00 4.51
4988 8301 2.573083 GGTTGCATGTGGTGGTGGG 61.573 63.158 0.00 0.00 0.00 4.61
4989 8302 1.186917 ATGGTTGCATGTGGTGGTGG 61.187 55.000 0.00 0.00 0.00 4.61
4990 8303 0.038067 CATGGTTGCATGTGGTGGTG 60.038 55.000 0.00 0.00 0.00 4.17
4991 8304 2.353858 CATGGTTGCATGTGGTGGT 58.646 52.632 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.