Multiple sequence alignment - TraesCS1D01G233200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G233200 chr1D 100.000 2868 0 0 1 2868 321705991 321703124 0.000000e+00 5297
1 TraesCS1D01G233200 chr1D 90.731 917 46 19 748 1654 321640375 321641262 0.000000e+00 1186
2 TraesCS1D01G233200 chr1D 97.412 425 9 2 1039 1462 369925931 369925508 0.000000e+00 723
3 TraesCS1D01G233200 chr1D 95.467 353 16 0 1 353 204998752 204998400 5.360000e-157 564
4 TraesCS1D01G233200 chr1D 85.817 416 24 8 1727 2107 321641457 321641872 2.660000e-110 409
5 TraesCS1D01G233200 chr1B 91.525 1062 60 16 609 1654 434423621 434422574 0.000000e+00 1435
6 TraesCS1D01G233200 chr1B 92.191 922 45 13 740 1648 434408793 434409700 0.000000e+00 1279
7 TraesCS1D01G233200 chr1B 97.400 423 11 0 1032 1454 492369058 492368636 0.000000e+00 721
8 TraesCS1D01G233200 chr1B 88.319 565 29 10 1712 2242 434422365 434421804 0.000000e+00 643
9 TraesCS1D01G233200 chr1B 88.028 568 24 12 1717 2242 434409880 434410445 1.450000e-177 632
10 TraesCS1D01G233200 chr1A 94.760 916 41 6 736 1648 400975650 400974739 0.000000e+00 1419
11 TraesCS1D01G233200 chr1A 93.137 612 41 1 2258 2868 245932878 245932267 0.000000e+00 896
12 TraesCS1D01G233200 chr1A 92.845 587 42 0 2282 2868 245942067 245941481 0.000000e+00 852
13 TraesCS1D01G233200 chr1A 86.769 718 71 19 753 1454 468599494 468598785 0.000000e+00 778
14 TraesCS1D01G233200 chr1A 89.867 375 30 5 1870 2242 400974408 400974040 2.590000e-130 475
15 TraesCS1D01G233200 chr1A 93.312 314 18 3 1309 1619 400962216 400962529 7.240000e-126 460
16 TraesCS1D01G233200 chr1A 84.464 457 34 13 1811 2242 400962843 400963287 1.590000e-112 416
17 TraesCS1D01G233200 chr1A 91.398 93 5 2 496 586 400960350 400960441 1.080000e-24 124
18 TraesCS1D01G233200 chr6D 97.608 627 15 0 2242 2868 178003276 178002650 0.000000e+00 1075
19 TraesCS1D01G233200 chr6D 93.779 643 24 3 2242 2868 76002881 76002239 0.000000e+00 952
20 TraesCS1D01G233200 chr6D 91.977 349 28 0 1 349 22673244 22673592 9.230000e-135 490
21 TraesCS1D01G233200 chr6D 91.691 349 29 0 1 349 22357598 22357946 4.300000e-133 484
22 TraesCS1D01G233200 chr6D 90.544 349 33 0 1 349 22833851 22834199 2.010000e-126 462
23 TraesCS1D01G233200 chr6D 90.120 334 33 0 16 349 22455974 22456307 4.390000e-118 435
24 TraesCS1D01G233200 chr6D 89.820 334 34 0 16 349 22563073 22563406 2.040000e-116 429
25 TraesCS1D01G233200 chr6D 87.393 349 44 0 1 349 360696630 360696978 4.450000e-108 401
26 TraesCS1D01G233200 chr7A 95.694 627 27 0 2242 2868 696025869 696026495 0.000000e+00 1009
27 TraesCS1D01G233200 chr7A 92.687 629 43 2 2240 2868 195395330 195394705 0.000000e+00 904
28 TraesCS1D01G233200 chr3D 94.586 628 31 2 2241 2868 146047672 146048296 0.000000e+00 968
29 TraesCS1D01G233200 chr3D 93.103 348 24 0 1 348 369478017 369477670 7.090000e-141 510
30 TraesCS1D01G233200 chr3D 90.028 351 33 2 1 350 278783428 278783777 1.210000e-123 453
31 TraesCS1D01G233200 chr3A 92.834 614 41 1 2258 2868 692350142 692350755 0.000000e+00 887
32 TraesCS1D01G233200 chr3A 93.123 349 22 2 1 348 738073784 738073437 7.090000e-141 510
33 TraesCS1D01G233200 chr3A 87.179 351 21 8 1868 2199 27167835 27168180 7.500000e-101 377
34 TraesCS1D01G233200 chr3A 86.857 350 24 9 1868 2199 27213449 27213794 3.490000e-99 372
35 TraesCS1D01G233200 chr3A 86.857 350 23 8 1868 2199 27069689 27070033 1.260000e-98 370
36 TraesCS1D01G233200 chr3A 86.610 351 23 8 1868 2199 27128276 27128621 1.620000e-97 366
37 TraesCS1D01G233200 chr2D 92.195 615 44 2 2258 2868 229827018 229827632 0.000000e+00 867
38 TraesCS1D01G233200 chr2D 90.043 231 21 2 2242 2471 421780886 421780657 6.010000e-77 298
39 TraesCS1D01G233200 chr4A 87.801 705 58 20 780 1465 23611491 23610796 0.000000e+00 800
40 TraesCS1D01G233200 chr6B 93.033 488 19 11 1040 1515 58777810 58778294 0.000000e+00 699
41 TraesCS1D01G233200 chr4D 94.901 353 18 0 1 353 499741973 499741621 1.160000e-153 553
42 TraesCS1D01G233200 chr4D 87.571 354 42 2 1 353 507766515 507766163 2.660000e-110 409
43 TraesCS1D01G233200 chr7D 93.220 354 22 2 1 353 618287857 618287505 1.180000e-143 520
44 TraesCS1D01G233200 chr2B 93.429 350 21 2 1 349 617878836 617879184 4.240000e-143 518
45 TraesCS1D01G233200 chr7B 92.635 353 26 0 1 353 706320080 706319728 2.550000e-140 508


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G233200 chr1D 321703124 321705991 2867 True 5297.000000 5297 100.000000 1 2868 1 chr1D.!!$R2 2867
1 TraesCS1D01G233200 chr1D 321640375 321641872 1497 False 797.500000 1186 88.274000 748 2107 2 chr1D.!!$F1 1359
2 TraesCS1D01G233200 chr1B 434421804 434423621 1817 True 1039.000000 1435 89.922000 609 2242 2 chr1B.!!$R2 1633
3 TraesCS1D01G233200 chr1B 434408793 434410445 1652 False 955.500000 1279 90.109500 740 2242 2 chr1B.!!$F1 1502
4 TraesCS1D01G233200 chr1A 400974040 400975650 1610 True 947.000000 1419 92.313500 736 2242 2 chr1A.!!$R4 1506
5 TraesCS1D01G233200 chr1A 245932267 245932878 611 True 896.000000 896 93.137000 2258 2868 1 chr1A.!!$R1 610
6 TraesCS1D01G233200 chr1A 245941481 245942067 586 True 852.000000 852 92.845000 2282 2868 1 chr1A.!!$R2 586
7 TraesCS1D01G233200 chr1A 468598785 468599494 709 True 778.000000 778 86.769000 753 1454 1 chr1A.!!$R3 701
8 TraesCS1D01G233200 chr1A 400960350 400963287 2937 False 333.333333 460 89.724667 496 2242 3 chr1A.!!$F1 1746
9 TraesCS1D01G233200 chr6D 178002650 178003276 626 True 1075.000000 1075 97.608000 2242 2868 1 chr6D.!!$R2 626
10 TraesCS1D01G233200 chr6D 76002239 76002881 642 True 952.000000 952 93.779000 2242 2868 1 chr6D.!!$R1 626
11 TraesCS1D01G233200 chr7A 696025869 696026495 626 False 1009.000000 1009 95.694000 2242 2868 1 chr7A.!!$F1 626
12 TraesCS1D01G233200 chr7A 195394705 195395330 625 True 904.000000 904 92.687000 2240 2868 1 chr7A.!!$R1 628
13 TraesCS1D01G233200 chr3D 146047672 146048296 624 False 968.000000 968 94.586000 2241 2868 1 chr3D.!!$F1 627
14 TraesCS1D01G233200 chr3A 692350142 692350755 613 False 887.000000 887 92.834000 2258 2868 1 chr3A.!!$F5 610
15 TraesCS1D01G233200 chr2D 229827018 229827632 614 False 867.000000 867 92.195000 2258 2868 1 chr2D.!!$F1 610
16 TraesCS1D01G233200 chr4A 23610796 23611491 695 True 800.000000 800 87.801000 780 1465 1 chr4A.!!$R1 685

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
356 357 0.105760 AGTCAGATCCGCCATCTCCT 60.106 55.0 0.00 0.00 40.20 3.69 F
367 368 0.174389 CCATCTCCTCGGCGATATGG 59.826 60.0 11.27 16.76 32.19 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 2971 0.179702 GATCAGATCCAGTGGCAGCA 59.820 55.000 3.51 0.0 0.00 4.41 R
2019 3520 1.730902 CGACAGTGGCGACTCACAG 60.731 63.158 14.90 0.0 39.93 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.038863 TCCACAACTCCCACCATACT 57.961 50.000 0.00 0.00 0.00 2.12
20 21 3.193395 TCCACAACTCCCACCATACTA 57.807 47.619 0.00 0.00 0.00 1.82
21 22 3.104512 TCCACAACTCCCACCATACTAG 58.895 50.000 0.00 0.00 0.00 2.57
22 23 2.420129 CCACAACTCCCACCATACTAGC 60.420 54.545 0.00 0.00 0.00 3.42
23 24 1.480954 ACAACTCCCACCATACTAGCG 59.519 52.381 0.00 0.00 0.00 4.26
24 25 0.464452 AACTCCCACCATACTAGCGC 59.536 55.000 0.00 0.00 0.00 5.92
25 26 0.686441 ACTCCCACCATACTAGCGCA 60.686 55.000 11.47 0.00 0.00 6.09
26 27 0.464036 CTCCCACCATACTAGCGCAA 59.536 55.000 11.47 0.00 0.00 4.85
27 28 0.177141 TCCCACCATACTAGCGCAAC 59.823 55.000 11.47 0.00 0.00 4.17
28 29 0.107897 CCCACCATACTAGCGCAACA 60.108 55.000 11.47 0.00 0.00 3.33
29 30 1.677518 CCCACCATACTAGCGCAACAA 60.678 52.381 11.47 0.00 0.00 2.83
30 31 2.288666 CCACCATACTAGCGCAACAAT 58.711 47.619 11.47 0.00 0.00 2.71
31 32 3.462982 CCACCATACTAGCGCAACAATA 58.537 45.455 11.47 0.00 0.00 1.90
32 33 3.494626 CCACCATACTAGCGCAACAATAG 59.505 47.826 11.47 4.40 0.00 1.73
33 34 4.119862 CACCATACTAGCGCAACAATAGT 58.880 43.478 11.47 10.94 34.29 2.12
34 35 5.286438 CACCATACTAGCGCAACAATAGTA 58.714 41.667 11.47 12.95 36.67 1.82
35 36 5.175126 CACCATACTAGCGCAACAATAGTAC 59.825 44.000 11.47 0.00 35.45 2.73
36 37 4.381863 CCATACTAGCGCAACAATAGTACG 59.618 45.833 11.47 5.02 35.45 3.67
37 38 3.770263 ACTAGCGCAACAATAGTACGA 57.230 42.857 11.47 0.00 31.29 3.43
38 39 4.100707 ACTAGCGCAACAATAGTACGAA 57.899 40.909 11.47 0.00 31.29 3.85
39 40 4.103357 ACTAGCGCAACAATAGTACGAAG 58.897 43.478 11.47 0.00 31.29 3.79
40 41 2.268298 AGCGCAACAATAGTACGAAGG 58.732 47.619 11.47 0.00 31.29 3.46
41 42 1.997606 GCGCAACAATAGTACGAAGGT 59.002 47.619 0.30 0.00 31.29 3.50
42 43 2.028883 GCGCAACAATAGTACGAAGGTC 59.971 50.000 0.30 0.00 31.29 3.85
43 44 3.508762 CGCAACAATAGTACGAAGGTCT 58.491 45.455 0.00 0.00 31.29 3.85
44 45 3.924686 CGCAACAATAGTACGAAGGTCTT 59.075 43.478 0.00 0.00 31.29 3.01
45 46 4.387862 CGCAACAATAGTACGAAGGTCTTT 59.612 41.667 0.00 0.00 31.29 2.52
46 47 5.444218 CGCAACAATAGTACGAAGGTCTTTC 60.444 44.000 0.00 0.00 31.29 2.62
47 48 5.407387 GCAACAATAGTACGAAGGTCTTTCA 59.593 40.000 0.00 0.00 35.43 2.69
48 49 6.092259 GCAACAATAGTACGAAGGTCTTTCAT 59.908 38.462 0.00 0.00 35.43 2.57
49 50 7.456253 CAACAATAGTACGAAGGTCTTTCATG 58.544 38.462 0.00 0.00 35.43 3.07
50 51 5.581085 ACAATAGTACGAAGGTCTTTCATGC 59.419 40.000 0.00 0.00 35.43 4.06
51 52 3.963428 AGTACGAAGGTCTTTCATGCT 57.037 42.857 0.00 0.00 35.43 3.79
52 53 3.851098 AGTACGAAGGTCTTTCATGCTC 58.149 45.455 0.00 0.00 35.43 4.26
53 54 2.839486 ACGAAGGTCTTTCATGCTCA 57.161 45.000 0.00 0.00 35.43 4.26
54 55 3.340814 ACGAAGGTCTTTCATGCTCAT 57.659 42.857 0.00 0.00 35.43 2.90
55 56 3.005554 ACGAAGGTCTTTCATGCTCATG 58.994 45.455 3.55 3.55 40.09 3.07
56 57 2.223203 CGAAGGTCTTTCATGCTCATGC 60.223 50.000 5.04 0.00 38.65 4.06
57 58 1.760192 AGGTCTTTCATGCTCATGCC 58.240 50.000 5.04 1.02 38.65 4.40
58 59 1.005097 AGGTCTTTCATGCTCATGCCA 59.995 47.619 5.04 0.00 38.65 4.92
59 60 2.029623 GGTCTTTCATGCTCATGCCAT 58.970 47.619 5.04 0.00 38.65 4.40
60 61 2.034305 GGTCTTTCATGCTCATGCCATC 59.966 50.000 5.04 0.00 38.65 3.51
61 62 2.950309 GTCTTTCATGCTCATGCCATCT 59.050 45.455 5.04 0.00 38.65 2.90
62 63 4.132336 GTCTTTCATGCTCATGCCATCTA 58.868 43.478 5.04 0.00 38.65 1.98
63 64 4.577693 GTCTTTCATGCTCATGCCATCTAA 59.422 41.667 5.04 0.00 38.65 2.10
64 65 5.241064 GTCTTTCATGCTCATGCCATCTAAT 59.759 40.000 5.04 0.00 38.65 1.73
65 66 5.472478 TCTTTCATGCTCATGCCATCTAATC 59.528 40.000 5.04 0.00 38.65 1.75
66 67 3.682696 TCATGCTCATGCCATCTAATCC 58.317 45.455 5.04 0.00 38.65 3.01
67 68 3.329814 TCATGCTCATGCCATCTAATCCT 59.670 43.478 5.04 0.00 38.65 3.24
68 69 3.413846 TGCTCATGCCATCTAATCCTC 57.586 47.619 0.00 0.00 38.71 3.71
69 70 2.289257 TGCTCATGCCATCTAATCCTCG 60.289 50.000 0.00 0.00 38.71 4.63
70 71 2.344950 CTCATGCCATCTAATCCTCGC 58.655 52.381 0.00 0.00 0.00 5.03
71 72 1.973515 TCATGCCATCTAATCCTCGCT 59.026 47.619 0.00 0.00 0.00 4.93
72 73 2.369860 TCATGCCATCTAATCCTCGCTT 59.630 45.455 0.00 0.00 0.00 4.68
73 74 2.245159 TGCCATCTAATCCTCGCTTG 57.755 50.000 0.00 0.00 0.00 4.01
74 75 1.202687 TGCCATCTAATCCTCGCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
75 76 1.517242 CCATCTAATCCTCGCTTGGC 58.483 55.000 0.00 0.00 0.00 4.52
76 77 1.202687 CCATCTAATCCTCGCTTGGCA 60.203 52.381 0.00 0.00 0.00 4.92
77 78 2.564771 CATCTAATCCTCGCTTGGCAA 58.435 47.619 0.00 0.00 0.00 4.52
78 79 2.024176 TCTAATCCTCGCTTGGCAAC 57.976 50.000 0.00 0.00 0.00 4.17
79 80 1.555075 TCTAATCCTCGCTTGGCAACT 59.445 47.619 0.00 0.00 37.61 3.16
80 81 1.667724 CTAATCCTCGCTTGGCAACTG 59.332 52.381 0.00 0.00 37.61 3.16
81 82 1.589716 AATCCTCGCTTGGCAACTGC 61.590 55.000 0.00 0.00 41.14 4.40
91 92 4.133796 GCAACTGCCCATTCCGCC 62.134 66.667 0.00 0.00 34.31 6.13
92 93 2.676121 CAACTGCCCATTCCGCCA 60.676 61.111 0.00 0.00 0.00 5.69
93 94 2.361610 AACTGCCCATTCCGCCAG 60.362 61.111 0.00 0.00 0.00 4.85
99 100 3.499737 CCATTCCGCCAGCGTGTC 61.500 66.667 11.55 0.00 37.81 3.67
100 101 2.434884 CATTCCGCCAGCGTGTCT 60.435 61.111 11.55 0.00 37.81 3.41
101 102 2.034879 CATTCCGCCAGCGTGTCTT 61.035 57.895 11.55 0.00 37.81 3.01
102 103 2.034879 ATTCCGCCAGCGTGTCTTG 61.035 57.895 11.55 0.00 37.81 3.02
103 104 2.731691 ATTCCGCCAGCGTGTCTTGT 62.732 55.000 11.55 0.00 37.81 3.16
104 105 2.933878 TTCCGCCAGCGTGTCTTGTT 62.934 55.000 11.55 0.00 37.81 2.83
105 106 2.249309 CGCCAGCGTGTCTTGTTG 59.751 61.111 3.35 0.00 34.35 3.33
106 107 2.243957 CGCCAGCGTGTCTTGTTGA 61.244 57.895 3.35 0.00 34.35 3.18
107 108 1.571460 GCCAGCGTGTCTTGTTGAG 59.429 57.895 0.00 0.00 0.00 3.02
108 109 0.880278 GCCAGCGTGTCTTGTTGAGA 60.880 55.000 0.00 0.00 0.00 3.27
109 110 1.800805 CCAGCGTGTCTTGTTGAGAT 58.199 50.000 0.00 0.00 36.61 2.75
110 111 1.462283 CCAGCGTGTCTTGTTGAGATG 59.538 52.381 0.00 0.00 36.61 2.90
111 112 1.462283 CAGCGTGTCTTGTTGAGATGG 59.538 52.381 0.00 0.00 36.61 3.51
112 113 0.798776 GCGTGTCTTGTTGAGATGGG 59.201 55.000 0.00 0.00 36.61 4.00
113 114 1.442769 CGTGTCTTGTTGAGATGGGG 58.557 55.000 0.00 0.00 36.61 4.96
114 115 1.270839 CGTGTCTTGTTGAGATGGGGT 60.271 52.381 0.00 0.00 36.61 4.95
115 116 2.427506 GTGTCTTGTTGAGATGGGGTC 58.572 52.381 0.00 0.00 36.61 4.46
116 117 1.351017 TGTCTTGTTGAGATGGGGTCC 59.649 52.381 0.00 0.00 36.61 4.46
117 118 1.351017 GTCTTGTTGAGATGGGGTCCA 59.649 52.381 0.00 0.00 36.61 4.02
118 119 2.061848 TCTTGTTGAGATGGGGTCCAA 58.938 47.619 0.00 0.00 36.95 3.53
119 120 2.649312 TCTTGTTGAGATGGGGTCCAAT 59.351 45.455 0.00 0.00 36.95 3.16
120 121 2.806945 TGTTGAGATGGGGTCCAATC 57.193 50.000 0.00 0.00 36.95 2.67
121 122 1.284785 TGTTGAGATGGGGTCCAATCC 59.715 52.381 0.88 0.00 36.95 3.01
122 123 0.546122 TTGAGATGGGGTCCAATCCG 59.454 55.000 0.88 0.00 36.95 4.18
123 124 1.344953 TGAGATGGGGTCCAATCCGG 61.345 60.000 0.00 0.00 36.95 5.14
124 125 2.203351 GATGGGGTCCAATCCGGC 60.203 66.667 0.00 0.00 36.95 6.13
125 126 2.696125 ATGGGGTCCAATCCGGCT 60.696 61.111 0.00 0.00 36.95 5.52
126 127 2.284515 GATGGGGTCCAATCCGGCTT 62.285 60.000 0.00 0.00 36.95 4.35
127 128 2.440247 GGGGTCCAATCCGGCTTG 60.440 66.667 11.14 11.14 33.14 4.01
128 129 3.140814 GGGTCCAATCCGGCTTGC 61.141 66.667 12.62 0.00 33.14 4.01
129 130 3.140814 GGTCCAATCCGGCTTGCC 61.141 66.667 12.62 5.77 33.14 4.52
130 131 3.140814 GTCCAATCCGGCTTGCCC 61.141 66.667 12.62 1.27 33.14 5.36
131 132 3.656280 TCCAATCCGGCTTGCCCA 61.656 61.111 12.62 0.00 33.14 5.36
132 133 2.679642 CCAATCCGGCTTGCCCAA 60.680 61.111 12.62 0.00 0.00 4.12
133 134 2.713967 CCAATCCGGCTTGCCCAAG 61.714 63.158 12.62 3.70 41.24 3.61
134 135 2.362889 AATCCGGCTTGCCCAAGG 60.363 61.111 9.81 1.98 38.80 3.61
144 145 2.679716 GCCCAAGGCCTCACAGAT 59.320 61.111 5.23 0.00 44.06 2.90
145 146 1.452833 GCCCAAGGCCTCACAGATC 60.453 63.158 5.23 0.00 44.06 2.75
146 147 1.225704 CCCAAGGCCTCACAGATCC 59.774 63.158 5.23 0.00 0.00 3.36
147 148 1.277580 CCCAAGGCCTCACAGATCCT 61.278 60.000 5.23 0.00 0.00 3.24
148 149 0.179936 CCAAGGCCTCACAGATCCTC 59.820 60.000 5.23 0.00 0.00 3.71
149 150 0.907486 CAAGGCCTCACAGATCCTCA 59.093 55.000 5.23 0.00 0.00 3.86
150 151 0.908198 AAGGCCTCACAGATCCTCAC 59.092 55.000 5.23 0.00 0.00 3.51
151 152 0.980231 AGGCCTCACAGATCCTCACC 60.980 60.000 0.00 0.00 0.00 4.02
152 153 1.524482 GCCTCACAGATCCTCACCC 59.476 63.158 0.00 0.00 0.00 4.61
153 154 1.267574 GCCTCACAGATCCTCACCCA 61.268 60.000 0.00 0.00 0.00 4.51
154 155 1.279496 CCTCACAGATCCTCACCCAA 58.721 55.000 0.00 0.00 0.00 4.12
155 156 1.209019 CCTCACAGATCCTCACCCAAG 59.791 57.143 0.00 0.00 0.00 3.61
156 157 1.905215 CTCACAGATCCTCACCCAAGT 59.095 52.381 0.00 0.00 0.00 3.16
157 158 3.099905 CTCACAGATCCTCACCCAAGTA 58.900 50.000 0.00 0.00 0.00 2.24
158 159 3.099905 TCACAGATCCTCACCCAAGTAG 58.900 50.000 0.00 0.00 0.00 2.57
159 160 2.834549 CACAGATCCTCACCCAAGTAGT 59.165 50.000 0.00 0.00 0.00 2.73
160 161 3.100671 ACAGATCCTCACCCAAGTAGTC 58.899 50.000 0.00 0.00 0.00 2.59
161 162 2.432510 CAGATCCTCACCCAAGTAGTCC 59.567 54.545 0.00 0.00 0.00 3.85
162 163 2.316372 AGATCCTCACCCAAGTAGTCCT 59.684 50.000 0.00 0.00 0.00 3.85
163 164 3.532232 AGATCCTCACCCAAGTAGTCCTA 59.468 47.826 0.00 0.00 0.00 2.94
164 165 3.383698 TCCTCACCCAAGTAGTCCTAG 57.616 52.381 0.00 0.00 0.00 3.02
165 166 1.757699 CCTCACCCAAGTAGTCCTAGC 59.242 57.143 0.00 0.00 0.00 3.42
166 167 2.457598 CTCACCCAAGTAGTCCTAGCA 58.542 52.381 0.00 0.00 0.00 3.49
167 168 2.832129 CTCACCCAAGTAGTCCTAGCAA 59.168 50.000 0.00 0.00 0.00 3.91
168 169 3.244582 TCACCCAAGTAGTCCTAGCAAA 58.755 45.455 0.00 0.00 0.00 3.68
169 170 3.260884 TCACCCAAGTAGTCCTAGCAAAG 59.739 47.826 0.00 0.00 0.00 2.77
170 171 3.260884 CACCCAAGTAGTCCTAGCAAAGA 59.739 47.826 0.00 0.00 0.00 2.52
171 172 3.261137 ACCCAAGTAGTCCTAGCAAAGAC 59.739 47.826 0.00 0.00 0.00 3.01
172 173 3.512680 CCAAGTAGTCCTAGCAAAGACG 58.487 50.000 0.00 0.00 38.08 4.18
173 174 2.924290 CAAGTAGTCCTAGCAAAGACGC 59.076 50.000 0.00 0.00 38.08 5.19
174 175 2.168496 AGTAGTCCTAGCAAAGACGCA 58.832 47.619 0.00 0.00 38.08 5.24
175 176 2.561419 AGTAGTCCTAGCAAAGACGCAA 59.439 45.455 0.00 0.00 38.08 4.85
191 192 2.688507 CGCAAGTGAGTAGAATGTGGT 58.311 47.619 0.00 0.00 0.00 4.16
192 193 3.067106 CGCAAGTGAGTAGAATGTGGTT 58.933 45.455 0.00 0.00 0.00 3.67
193 194 4.242475 CGCAAGTGAGTAGAATGTGGTTA 58.758 43.478 0.00 0.00 0.00 2.85
194 195 4.688879 CGCAAGTGAGTAGAATGTGGTTAA 59.311 41.667 0.00 0.00 0.00 2.01
195 196 5.351465 CGCAAGTGAGTAGAATGTGGTTAAT 59.649 40.000 0.00 0.00 0.00 1.40
196 197 6.128282 CGCAAGTGAGTAGAATGTGGTTAATT 60.128 38.462 0.00 0.00 0.00 1.40
197 198 7.023575 GCAAGTGAGTAGAATGTGGTTAATTG 58.976 38.462 0.00 0.00 0.00 2.32
198 199 7.308589 GCAAGTGAGTAGAATGTGGTTAATTGT 60.309 37.037 0.00 0.00 0.00 2.71
199 200 8.567948 CAAGTGAGTAGAATGTGGTTAATTGTT 58.432 33.333 0.00 0.00 0.00 2.83
200 201 8.691661 AGTGAGTAGAATGTGGTTAATTGTTT 57.308 30.769 0.00 0.00 0.00 2.83
201 202 8.784043 AGTGAGTAGAATGTGGTTAATTGTTTC 58.216 33.333 0.00 0.00 0.00 2.78
202 203 8.021396 GTGAGTAGAATGTGGTTAATTGTTTCC 58.979 37.037 0.00 0.00 0.00 3.13
203 204 7.942341 TGAGTAGAATGTGGTTAATTGTTTCCT 59.058 33.333 0.00 0.00 0.00 3.36
204 205 8.336801 AGTAGAATGTGGTTAATTGTTTCCTC 57.663 34.615 0.00 0.00 0.00 3.71
205 206 6.590234 AGAATGTGGTTAATTGTTTCCTCC 57.410 37.500 0.00 0.00 0.00 4.30
206 207 6.314917 AGAATGTGGTTAATTGTTTCCTCCT 58.685 36.000 0.00 0.00 0.00 3.69
207 208 6.434340 AGAATGTGGTTAATTGTTTCCTCCTC 59.566 38.462 0.00 0.00 0.00 3.71
208 209 4.403734 TGTGGTTAATTGTTTCCTCCTCC 58.596 43.478 0.00 0.00 0.00 4.30
209 210 4.105697 TGTGGTTAATTGTTTCCTCCTCCT 59.894 41.667 0.00 0.00 0.00 3.69
210 211 4.459337 GTGGTTAATTGTTTCCTCCTCCTG 59.541 45.833 0.00 0.00 0.00 3.86
211 212 4.017126 GGTTAATTGTTTCCTCCTCCTGG 58.983 47.826 0.00 0.00 0.00 4.45
212 213 4.508584 GGTTAATTGTTTCCTCCTCCTGGT 60.509 45.833 0.00 0.00 34.23 4.00
213 214 3.441500 AATTGTTTCCTCCTCCTGGTC 57.558 47.619 0.00 0.00 34.23 4.02
214 215 1.814429 TTGTTTCCTCCTCCTGGTCA 58.186 50.000 0.00 0.00 34.23 4.02
215 216 1.056660 TGTTTCCTCCTCCTGGTCAC 58.943 55.000 0.00 0.00 34.23 3.67
216 217 1.056660 GTTTCCTCCTCCTGGTCACA 58.943 55.000 0.00 0.00 34.23 3.58
217 218 1.420138 GTTTCCTCCTCCTGGTCACAA 59.580 52.381 0.00 0.00 34.23 3.33
218 219 1.814429 TTCCTCCTCCTGGTCACAAA 58.186 50.000 0.00 0.00 34.23 2.83
219 220 1.814429 TCCTCCTCCTGGTCACAAAA 58.186 50.000 0.00 0.00 34.23 2.44
220 221 1.420138 TCCTCCTCCTGGTCACAAAAC 59.580 52.381 0.00 0.00 34.23 2.43
221 222 1.512926 CTCCTCCTGGTCACAAAACG 58.487 55.000 0.00 0.00 34.23 3.60
222 223 0.107831 TCCTCCTGGTCACAAAACGG 59.892 55.000 0.00 0.00 34.23 4.44
223 224 0.889186 CCTCCTGGTCACAAAACGGG 60.889 60.000 0.00 0.00 0.00 5.28
224 225 1.515521 CTCCTGGTCACAAAACGGGC 61.516 60.000 0.00 0.00 0.00 6.13
225 226 1.826054 CCTGGTCACAAAACGGGCA 60.826 57.895 0.00 0.00 0.00 5.36
226 227 1.358759 CTGGTCACAAAACGGGCAC 59.641 57.895 0.00 0.00 0.00 5.01
228 229 2.353030 GTCACAAAACGGGCACGC 60.353 61.111 9.12 0.00 46.04 5.34
229 230 3.943034 TCACAAAACGGGCACGCG 61.943 61.111 9.12 3.53 46.04 6.01
230 231 4.244802 CACAAAACGGGCACGCGT 62.245 61.111 9.12 5.58 46.04 6.01
231 232 3.510675 ACAAAACGGGCACGCGTT 61.511 55.556 18.21 18.21 44.33 4.84
232 233 2.724358 CAAAACGGGCACGCGTTC 60.724 61.111 22.93 3.91 42.40 3.95
233 234 2.898343 AAAACGGGCACGCGTTCT 60.898 55.556 22.93 9.32 42.40 3.01
234 235 3.175976 AAAACGGGCACGCGTTCTG 62.176 57.895 22.93 13.00 42.40 3.02
241 242 4.374702 CACGCGTTCTGGTGCAGC 62.375 66.667 10.22 9.47 0.00 5.25
242 243 4.908687 ACGCGTTCTGGTGCAGCA 62.909 61.111 19.03 19.03 0.00 4.41
243 244 4.081030 CGCGTTCTGGTGCAGCAG 62.081 66.667 34.65 34.65 0.00 4.24
244 245 4.395583 GCGTTCTGGTGCAGCAGC 62.396 66.667 35.36 23.64 42.57 5.25
245 246 3.730761 CGTTCTGGTGCAGCAGCC 61.731 66.667 35.36 26.57 41.13 4.85
246 247 3.368571 GTTCTGGTGCAGCAGCCC 61.369 66.667 35.36 24.82 41.13 5.19
247 248 3.573229 TTCTGGTGCAGCAGCCCT 61.573 61.111 35.36 0.00 41.13 5.19
248 249 3.557903 TTCTGGTGCAGCAGCCCTC 62.558 63.158 35.36 0.00 41.13 4.30
249 250 4.031129 CTGGTGCAGCAGCCCTCT 62.031 66.667 30.93 0.00 41.13 3.69
250 251 3.972971 CTGGTGCAGCAGCCCTCTC 62.973 68.421 30.93 0.00 41.13 3.20
251 252 4.792804 GGTGCAGCAGCCCTCTCC 62.793 72.222 14.00 0.00 41.13 3.71
252 253 3.715097 GTGCAGCAGCCCTCTCCT 61.715 66.667 0.00 0.00 41.13 3.69
253 254 3.397439 TGCAGCAGCCCTCTCCTC 61.397 66.667 0.00 0.00 41.13 3.71
254 255 4.527583 GCAGCAGCCCTCTCCTCG 62.528 72.222 0.00 0.00 33.58 4.63
255 256 4.527583 CAGCAGCCCTCTCCTCGC 62.528 72.222 0.00 0.00 0.00 5.03
257 258 4.087892 GCAGCCCTCTCCTCGCAA 62.088 66.667 0.00 0.00 0.00 4.85
258 259 2.186384 CAGCCCTCTCCTCGCAAG 59.814 66.667 0.00 0.00 0.00 4.01
259 260 2.284258 AGCCCTCTCCTCGCAAGT 60.284 61.111 0.00 0.00 39.48 3.16
260 261 1.915769 AGCCCTCTCCTCGCAAGTT 60.916 57.895 0.00 0.00 39.48 2.66
261 262 1.743252 GCCCTCTCCTCGCAAGTTG 60.743 63.158 0.00 0.00 39.48 3.16
262 263 1.975327 CCCTCTCCTCGCAAGTTGA 59.025 57.895 7.16 0.00 39.48 3.18
263 264 0.539051 CCCTCTCCTCGCAAGTTGAT 59.461 55.000 7.16 0.00 39.48 2.57
264 265 1.472376 CCCTCTCCTCGCAAGTTGATC 60.472 57.143 7.16 0.00 39.48 2.92
265 266 1.472376 CCTCTCCTCGCAAGTTGATCC 60.472 57.143 7.16 0.00 39.48 3.36
266 267 0.173481 TCTCCTCGCAAGTTGATCCG 59.827 55.000 7.16 0.67 39.48 4.18
267 268 0.173481 CTCCTCGCAAGTTGATCCGA 59.827 55.000 7.16 5.49 39.48 4.55
268 269 0.108804 TCCTCGCAAGTTGATCCGAC 60.109 55.000 7.16 0.00 39.48 4.79
269 270 1.413767 CCTCGCAAGTTGATCCGACG 61.414 60.000 7.16 0.00 39.48 5.12
270 271 0.732880 CTCGCAAGTTGATCCGACGT 60.733 55.000 7.16 0.00 39.48 4.34
271 272 0.731514 TCGCAAGTTGATCCGACGTC 60.732 55.000 7.16 5.18 39.48 4.34
272 273 1.683790 CGCAAGTTGATCCGACGTCC 61.684 60.000 10.58 0.00 0.00 4.79
273 274 0.669318 GCAAGTTGATCCGACGTCCA 60.669 55.000 10.58 0.00 0.00 4.02
274 275 1.790755 CAAGTTGATCCGACGTCCAA 58.209 50.000 10.58 5.40 0.00 3.53
275 276 1.459592 CAAGTTGATCCGACGTCCAAC 59.540 52.381 20.89 20.89 39.17 3.77
276 277 0.677288 AGTTGATCCGACGTCCAACA 59.323 50.000 26.47 13.87 40.77 3.33
277 278 0.788391 GTTGATCCGACGTCCAACAC 59.212 55.000 22.51 8.39 38.84 3.32
278 279 0.320073 TTGATCCGACGTCCAACACC 60.320 55.000 10.58 0.00 0.00 4.16
279 280 1.183030 TGATCCGACGTCCAACACCT 61.183 55.000 10.58 0.00 0.00 4.00
280 281 0.813184 GATCCGACGTCCAACACCTA 59.187 55.000 10.58 0.00 0.00 3.08
281 282 1.407979 GATCCGACGTCCAACACCTAT 59.592 52.381 10.58 0.00 0.00 2.57
282 283 0.813184 TCCGACGTCCAACACCTATC 59.187 55.000 10.58 0.00 0.00 2.08
283 284 0.179119 CCGACGTCCAACACCTATCC 60.179 60.000 10.58 0.00 0.00 2.59
284 285 0.179119 CGACGTCCAACACCTATCCC 60.179 60.000 10.58 0.00 0.00 3.85
285 286 1.192428 GACGTCCAACACCTATCCCT 58.808 55.000 3.51 0.00 0.00 4.20
286 287 0.902531 ACGTCCAACACCTATCCCTG 59.097 55.000 0.00 0.00 0.00 4.45
287 288 1.191535 CGTCCAACACCTATCCCTGA 58.808 55.000 0.00 0.00 0.00 3.86
288 289 1.137086 CGTCCAACACCTATCCCTGAG 59.863 57.143 0.00 0.00 0.00 3.35
289 290 1.486726 GTCCAACACCTATCCCTGAGG 59.513 57.143 0.00 0.00 40.22 3.86
290 291 0.839946 CCAACACCTATCCCTGAGGG 59.160 60.000 12.53 12.53 46.11 4.30
291 292 0.181350 CAACACCTATCCCTGAGGGC 59.819 60.000 14.20 0.00 43.94 5.19
292 293 0.988678 AACACCTATCCCTGAGGGCC 60.989 60.000 14.20 0.00 43.94 5.80
293 294 1.384502 CACCTATCCCTGAGGGCCA 60.385 63.158 14.20 1.14 43.94 5.36
294 295 0.988145 CACCTATCCCTGAGGGCCAA 60.988 60.000 14.20 0.00 43.94 4.52
295 296 0.988678 ACCTATCCCTGAGGGCCAAC 60.989 60.000 14.20 0.00 43.94 3.77
296 297 1.709994 CCTATCCCTGAGGGCCAACC 61.710 65.000 14.20 0.00 43.94 3.77
297 298 0.988145 CTATCCCTGAGGGCCAACCA 60.988 60.000 14.20 0.00 43.94 3.67
298 299 0.551377 TATCCCTGAGGGCCAACCAA 60.551 55.000 14.20 0.00 43.94 3.67
299 300 1.867595 ATCCCTGAGGGCCAACCAAG 61.868 60.000 14.20 0.00 43.94 3.61
300 301 2.845345 CCCTGAGGGCCAACCAAGT 61.845 63.158 3.66 0.00 43.89 3.16
301 302 1.604593 CCTGAGGGCCAACCAAGTG 60.605 63.158 6.18 0.00 43.89 3.16
302 303 1.455849 CTGAGGGCCAACCAAGTGA 59.544 57.895 6.18 0.00 43.89 3.41
303 304 0.178992 CTGAGGGCCAACCAAGTGAA 60.179 55.000 6.18 0.00 43.89 3.18
304 305 0.260230 TGAGGGCCAACCAAGTGAAA 59.740 50.000 6.18 0.00 43.89 2.69
305 306 1.342474 TGAGGGCCAACCAAGTGAAAA 60.342 47.619 6.18 0.00 43.89 2.29
306 307 1.760029 GAGGGCCAACCAAGTGAAAAA 59.240 47.619 6.18 0.00 43.89 1.94
307 308 2.368548 GAGGGCCAACCAAGTGAAAAAT 59.631 45.455 6.18 0.00 43.89 1.82
308 309 2.368548 AGGGCCAACCAAGTGAAAAATC 59.631 45.455 6.18 0.00 43.89 2.17
309 310 2.368548 GGGCCAACCAAGTGAAAAATCT 59.631 45.455 4.39 0.00 39.85 2.40
310 311 3.392882 GGCCAACCAAGTGAAAAATCTG 58.607 45.455 0.00 0.00 35.26 2.90
311 312 2.802247 GCCAACCAAGTGAAAAATCTGC 59.198 45.455 0.00 0.00 0.00 4.26
312 313 3.740764 GCCAACCAAGTGAAAAATCTGCA 60.741 43.478 0.00 0.00 0.00 4.41
313 314 3.803778 CCAACCAAGTGAAAAATCTGCAC 59.196 43.478 0.00 0.00 0.00 4.57
314 315 3.733443 ACCAAGTGAAAAATCTGCACC 57.267 42.857 0.00 0.00 33.14 5.01
315 316 3.030291 ACCAAGTGAAAAATCTGCACCA 58.970 40.909 0.00 0.00 33.14 4.17
316 317 3.642848 ACCAAGTGAAAAATCTGCACCAT 59.357 39.130 0.00 0.00 33.14 3.55
317 318 3.991773 CCAAGTGAAAAATCTGCACCATG 59.008 43.478 0.00 0.00 33.14 3.66
318 319 4.262121 CCAAGTGAAAAATCTGCACCATGA 60.262 41.667 0.00 0.00 33.14 3.07
319 320 4.778534 AGTGAAAAATCTGCACCATGAG 57.221 40.909 0.00 0.00 33.14 2.90
320 321 3.508793 AGTGAAAAATCTGCACCATGAGG 59.491 43.478 0.00 0.00 42.21 3.86
321 322 2.827322 TGAAAAATCTGCACCATGAGGG 59.173 45.455 0.00 0.00 44.81 4.30
330 331 2.347114 CCATGAGGGTGCACGTGA 59.653 61.111 22.23 1.04 0.00 4.35
331 332 2.034879 CCATGAGGGTGCACGTGAC 61.035 63.158 22.23 14.21 0.00 3.67
332 333 1.004560 CATGAGGGTGCACGTGACT 60.005 57.895 22.23 10.97 0.00 3.41
333 334 0.603707 CATGAGGGTGCACGTGACTT 60.604 55.000 22.23 4.56 0.00 3.01
334 335 0.320771 ATGAGGGTGCACGTGACTTC 60.321 55.000 22.23 14.29 0.00 3.01
335 336 1.668151 GAGGGTGCACGTGACTTCC 60.668 63.158 22.23 14.06 0.00 3.46
336 337 2.110213 GGGTGCACGTGACTTCCA 59.890 61.111 22.23 3.91 0.00 3.53
337 338 1.525077 GGGTGCACGTGACTTCCAA 60.525 57.895 22.23 0.00 0.00 3.53
338 339 1.507141 GGGTGCACGTGACTTCCAAG 61.507 60.000 22.23 0.00 0.00 3.61
339 340 0.814010 GGTGCACGTGACTTCCAAGT 60.814 55.000 22.23 0.00 43.16 3.16
348 349 3.842869 ACTTCCAAGTCAGATCCGC 57.157 52.632 0.00 0.00 32.86 5.54
349 350 0.250513 ACTTCCAAGTCAGATCCGCC 59.749 55.000 0.00 0.00 32.86 6.13
350 351 0.250234 CTTCCAAGTCAGATCCGCCA 59.750 55.000 0.00 0.00 0.00 5.69
351 352 0.911769 TTCCAAGTCAGATCCGCCAT 59.088 50.000 0.00 0.00 0.00 4.40
352 353 0.465705 TCCAAGTCAGATCCGCCATC 59.534 55.000 0.00 0.00 0.00 3.51
353 354 0.467384 CCAAGTCAGATCCGCCATCT 59.533 55.000 0.00 0.00 43.33 2.90
354 355 1.539929 CCAAGTCAGATCCGCCATCTC 60.540 57.143 0.00 0.00 40.20 2.75
355 356 0.755686 AAGTCAGATCCGCCATCTCC 59.244 55.000 0.00 0.00 40.20 3.71
356 357 0.105760 AGTCAGATCCGCCATCTCCT 60.106 55.000 0.00 0.00 40.20 3.69
357 358 0.316841 GTCAGATCCGCCATCTCCTC 59.683 60.000 0.00 0.00 40.20 3.71
358 359 1.175347 TCAGATCCGCCATCTCCTCG 61.175 60.000 0.00 0.00 40.20 4.63
359 360 1.905843 AGATCCGCCATCTCCTCGG 60.906 63.158 0.00 0.00 37.24 4.63
360 361 3.581687 GATCCGCCATCTCCTCGGC 62.582 68.421 0.00 0.00 45.28 5.54
364 365 3.366629 GCCATCTCCTCGGCGATA 58.633 61.111 11.27 0.15 38.82 2.92
365 366 1.893786 GCCATCTCCTCGGCGATAT 59.106 57.895 11.27 0.00 38.82 1.63
366 367 0.459237 GCCATCTCCTCGGCGATATG 60.459 60.000 11.27 11.82 38.82 1.78
367 368 0.174389 CCATCTCCTCGGCGATATGG 59.826 60.000 11.27 16.76 32.19 2.74
368 369 0.459237 CATCTCCTCGGCGATATGGC 60.459 60.000 11.27 0.27 40.44 4.40
379 380 3.299340 GCGATATGGCCCGGTATATAG 57.701 52.381 0.00 3.81 0.00 1.31
380 381 2.889045 GCGATATGGCCCGGTATATAGA 59.111 50.000 0.00 0.00 0.00 1.98
381 382 3.510360 GCGATATGGCCCGGTATATAGAT 59.490 47.826 0.00 0.00 0.00 1.98
382 383 4.618460 GCGATATGGCCCGGTATATAGATG 60.618 50.000 0.00 0.00 0.00 2.90
383 384 4.523173 CGATATGGCCCGGTATATAGATGT 59.477 45.833 0.00 0.00 0.00 3.06
384 385 5.335740 CGATATGGCCCGGTATATAGATGTC 60.336 48.000 0.00 0.00 0.00 3.06
385 386 3.468071 TGGCCCGGTATATAGATGTCT 57.532 47.619 0.00 0.00 0.00 3.41
386 387 3.786553 TGGCCCGGTATATAGATGTCTT 58.213 45.455 0.00 0.00 0.00 3.01
387 388 3.767673 TGGCCCGGTATATAGATGTCTTC 59.232 47.826 0.00 0.00 0.00 2.87
388 389 4.024670 GGCCCGGTATATAGATGTCTTCT 58.975 47.826 0.00 0.00 38.57 2.85
389 390 4.466726 GGCCCGGTATATAGATGTCTTCTT 59.533 45.833 0.00 0.00 35.79 2.52
390 391 5.394333 GGCCCGGTATATAGATGTCTTCTTC 60.394 48.000 0.00 0.00 35.79 2.87
391 392 5.419471 GCCCGGTATATAGATGTCTTCTTCT 59.581 44.000 0.00 0.00 35.79 2.85
392 393 6.071278 GCCCGGTATATAGATGTCTTCTTCTT 60.071 42.308 0.00 0.00 35.79 2.52
393 394 7.540299 CCCGGTATATAGATGTCTTCTTCTTC 58.460 42.308 0.00 0.00 35.79 2.87
394 395 7.363094 CCCGGTATATAGATGTCTTCTTCTTCC 60.363 44.444 0.00 0.00 35.79 3.46
395 396 7.394923 CCGGTATATAGATGTCTTCTTCTTCCT 59.605 40.741 0.00 0.00 35.79 3.36
396 397 8.455682 CGGTATATAGATGTCTTCTTCTTCCTC 58.544 40.741 0.00 0.00 35.79 3.71
397 398 9.528489 GGTATATAGATGTCTTCTTCTTCCTCT 57.472 37.037 0.00 0.00 35.79 3.69
400 401 9.881773 ATATAGATGTCTTCTTCTTCCTCTTCT 57.118 33.333 0.00 0.00 35.79 2.85
401 402 6.933514 AGATGTCTTCTTCTTCCTCTTCTT 57.066 37.500 0.00 0.00 0.00 2.52
402 403 6.935167 AGATGTCTTCTTCTTCCTCTTCTTC 58.065 40.000 0.00 0.00 0.00 2.87
403 404 6.496565 AGATGTCTTCTTCTTCCTCTTCTTCA 59.503 38.462 0.00 0.00 0.00 3.02
404 405 6.678568 TGTCTTCTTCTTCCTCTTCTTCAT 57.321 37.500 0.00 0.00 0.00 2.57
405 406 7.072263 TGTCTTCTTCTTCCTCTTCTTCATT 57.928 36.000 0.00 0.00 0.00 2.57
406 407 7.512992 TGTCTTCTTCTTCCTCTTCTTCATTT 58.487 34.615 0.00 0.00 0.00 2.32
407 408 7.659390 TGTCTTCTTCTTCCTCTTCTTCATTTC 59.341 37.037 0.00 0.00 0.00 2.17
408 409 7.119116 GTCTTCTTCTTCCTCTTCTTCATTTCC 59.881 40.741 0.00 0.00 0.00 3.13
409 410 6.694445 TCTTCTTCCTCTTCTTCATTTCCT 57.306 37.500 0.00 0.00 0.00 3.36
410 411 6.471146 TCTTCTTCCTCTTCTTCATTTCCTG 58.529 40.000 0.00 0.00 0.00 3.86
411 412 6.270927 TCTTCTTCCTCTTCTTCATTTCCTGA 59.729 38.462 0.00 0.00 0.00 3.86
412 413 6.633325 TCTTCCTCTTCTTCATTTCCTGAT 57.367 37.500 0.00 0.00 32.72 2.90
413 414 6.413052 TCTTCCTCTTCTTCATTTCCTGATG 58.587 40.000 0.00 0.00 32.72 3.07
414 415 5.768980 TCCTCTTCTTCATTTCCTGATGT 57.231 39.130 0.00 0.00 32.72 3.06
415 416 6.131972 TCCTCTTCTTCATTTCCTGATGTT 57.868 37.500 0.00 0.00 32.72 2.71
416 417 6.176183 TCCTCTTCTTCATTTCCTGATGTTC 58.824 40.000 0.00 0.00 32.72 3.18
417 418 5.942236 CCTCTTCTTCATTTCCTGATGTTCA 59.058 40.000 0.00 0.00 32.72 3.18
418 419 6.602406 CCTCTTCTTCATTTCCTGATGTTCAT 59.398 38.462 0.00 0.00 32.72 2.57
419 420 7.122353 CCTCTTCTTCATTTCCTGATGTTCATT 59.878 37.037 0.00 0.00 32.72 2.57
420 421 7.823665 TCTTCTTCATTTCCTGATGTTCATTG 58.176 34.615 0.00 0.00 32.72 2.82
421 422 7.666804 TCTTCTTCATTTCCTGATGTTCATTGA 59.333 33.333 0.00 0.00 32.72 2.57
422 423 7.149569 TCTTCATTTCCTGATGTTCATTGAC 57.850 36.000 0.00 0.00 32.72 3.18
423 424 6.944290 TCTTCATTTCCTGATGTTCATTGACT 59.056 34.615 0.00 0.00 32.72 3.41
424 425 6.748333 TCATTTCCTGATGTTCATTGACTC 57.252 37.500 0.00 0.00 0.00 3.36
425 426 5.352293 TCATTTCCTGATGTTCATTGACTCG 59.648 40.000 0.00 0.00 0.00 4.18
426 427 3.961480 TCCTGATGTTCATTGACTCGT 57.039 42.857 0.00 0.00 0.00 4.18
427 428 3.588955 TCCTGATGTTCATTGACTCGTG 58.411 45.455 0.00 0.00 0.00 4.35
428 429 3.006859 TCCTGATGTTCATTGACTCGTGT 59.993 43.478 0.00 0.00 0.00 4.49
429 430 4.219725 TCCTGATGTTCATTGACTCGTGTA 59.780 41.667 0.00 0.00 0.00 2.90
430 431 4.564372 CCTGATGTTCATTGACTCGTGTAG 59.436 45.833 0.00 0.00 0.00 2.74
431 432 4.494484 TGATGTTCATTGACTCGTGTAGG 58.506 43.478 0.00 0.00 0.00 3.18
432 433 3.313012 TGTTCATTGACTCGTGTAGGG 57.687 47.619 0.00 0.00 0.00 3.53
433 434 2.631062 TGTTCATTGACTCGTGTAGGGT 59.369 45.455 0.00 0.00 35.24 4.34
434 435 3.070446 TGTTCATTGACTCGTGTAGGGTT 59.930 43.478 0.00 0.00 30.37 4.11
435 436 4.062991 GTTCATTGACTCGTGTAGGGTTT 58.937 43.478 0.00 0.00 30.37 3.27
436 437 4.345859 TCATTGACTCGTGTAGGGTTTT 57.654 40.909 0.00 0.00 30.37 2.43
437 438 4.312443 TCATTGACTCGTGTAGGGTTTTC 58.688 43.478 0.00 0.00 30.37 2.29
438 439 4.039973 TCATTGACTCGTGTAGGGTTTTCT 59.960 41.667 0.00 0.00 30.37 2.52
439 440 4.411256 TTGACTCGTGTAGGGTTTTCTT 57.589 40.909 0.00 0.00 30.37 2.52
440 441 3.724374 TGACTCGTGTAGGGTTTTCTTG 58.276 45.455 0.00 0.00 30.37 3.02
441 442 3.064931 GACTCGTGTAGGGTTTTCTTGG 58.935 50.000 0.00 0.00 30.37 3.61
442 443 2.436911 ACTCGTGTAGGGTTTTCTTGGT 59.563 45.455 0.00 0.00 0.00 3.67
443 444 2.806244 CTCGTGTAGGGTTTTCTTGGTG 59.194 50.000 0.00 0.00 0.00 4.17
444 445 1.265905 CGTGTAGGGTTTTCTTGGTGC 59.734 52.381 0.00 0.00 0.00 5.01
445 446 2.583143 GTGTAGGGTTTTCTTGGTGCT 58.417 47.619 0.00 0.00 0.00 4.40
446 447 2.956333 GTGTAGGGTTTTCTTGGTGCTT 59.044 45.455 0.00 0.00 0.00 3.91
447 448 2.955660 TGTAGGGTTTTCTTGGTGCTTG 59.044 45.455 0.00 0.00 0.00 4.01
448 449 2.159179 AGGGTTTTCTTGGTGCTTGT 57.841 45.000 0.00 0.00 0.00 3.16
449 450 1.756538 AGGGTTTTCTTGGTGCTTGTG 59.243 47.619 0.00 0.00 0.00 3.33
450 451 1.570813 GGTTTTCTTGGTGCTTGTGC 58.429 50.000 0.00 0.00 40.20 4.57
459 460 4.846551 TGCTTGTGCACAGTACGT 57.153 50.000 20.59 0.00 45.31 3.57
460 461 3.969995 TGCTTGTGCACAGTACGTA 57.030 47.368 20.59 2.75 45.31 3.57
461 462 1.493772 TGCTTGTGCACAGTACGTAC 58.506 50.000 20.59 18.10 45.31 3.67
462 463 1.202428 TGCTTGTGCACAGTACGTACA 60.202 47.619 26.55 4.64 45.31 2.90
463 464 1.862201 GCTTGTGCACAGTACGTACAA 59.138 47.619 26.55 12.43 36.75 2.41
464 465 3.770765 CTTGTGCACAGTACGTACAAG 57.229 47.619 26.55 19.92 45.98 3.16
465 466 1.493772 TGTGCACAGTACGTACAAGC 58.506 50.000 26.55 24.04 0.00 4.01
466 467 1.202428 TGTGCACAGTACGTACAAGCA 60.202 47.619 26.55 26.00 0.00 3.91
467 468 1.862201 GTGCACAGTACGTACAAGCAA 59.138 47.619 28.77 16.97 33.60 3.91
468 469 1.862201 TGCACAGTACGTACAAGCAAC 59.138 47.619 26.55 13.87 30.55 4.17
469 470 2.132762 GCACAGTACGTACAAGCAACT 58.867 47.619 26.55 3.63 0.00 3.16
470 471 2.155155 GCACAGTACGTACAAGCAACTC 59.845 50.000 26.55 4.63 0.00 3.01
471 472 3.639538 CACAGTACGTACAAGCAACTCT 58.360 45.455 26.55 0.40 0.00 3.24
472 473 4.049186 CACAGTACGTACAAGCAACTCTT 58.951 43.478 26.55 0.00 34.78 2.85
473 474 4.506654 CACAGTACGTACAAGCAACTCTTT 59.493 41.667 26.55 0.00 31.27 2.52
474 475 4.506654 ACAGTACGTACAAGCAACTCTTTG 59.493 41.667 26.55 13.71 35.62 2.77
604 637 4.087892 CTGGTCCGGTCCTGGCAG 62.088 72.222 18.85 7.75 0.00 4.85
605 638 4.631740 TGGTCCGGTCCTGGCAGA 62.632 66.667 17.94 0.00 0.00 4.26
606 639 3.319198 GGTCCGGTCCTGGCAGAA 61.319 66.667 17.94 0.00 0.00 3.02
607 640 2.266055 GTCCGGTCCTGGCAGAAG 59.734 66.667 17.94 0.00 0.00 2.85
622 655 2.351738 GCAGAAGAATTGAAACGTGGGG 60.352 50.000 0.00 0.00 0.00 4.96
624 657 3.568007 CAGAAGAATTGAAACGTGGGGAA 59.432 43.478 0.00 0.00 0.00 3.97
656 689 0.873312 CATCCTCGATCACGCCACTG 60.873 60.000 0.00 0.00 39.58 3.66
677 712 0.891373 TCTGAACTGAAGAGAGGCCG 59.109 55.000 0.00 0.00 0.00 6.13
723 758 4.113815 CCCCGAGCAGGCAATCCA 62.114 66.667 0.00 0.00 39.21 3.41
822 858 3.411351 CGTGCCTCACCCGAAACG 61.411 66.667 0.00 0.00 0.00 3.60
865 901 1.428448 CAGATCCAACGCTCGAAACA 58.572 50.000 0.00 0.00 0.00 2.83
968 1028 2.375345 GGAGCCCCGAATCCTTCCA 61.375 63.158 0.00 0.00 32.51 3.53
970 1030 0.250510 GAGCCCCGAATCCTTCCATC 60.251 60.000 0.00 0.00 0.00 3.51
984 1054 3.609853 CTTCCATCGTTCCTCATTCCAA 58.390 45.455 0.00 0.00 0.00 3.53
992 1062 2.299013 GTTCCTCATTCCAACCCCAAAC 59.701 50.000 0.00 0.00 0.00 2.93
997 1067 0.251608 ATTCCAACCCCAAACCTCCG 60.252 55.000 0.00 0.00 0.00 4.63
1465 2673 2.515757 GCCTAGGCTGCTTCCTGC 60.516 66.667 27.17 0.00 43.25 4.85
1466 2674 3.041469 GCCTAGGCTGCTTCCTGCT 62.041 63.158 27.17 0.00 43.37 4.24
1467 2675 1.145819 CCTAGGCTGCTTCCTGCTC 59.854 63.158 0.00 0.00 43.37 4.26
1470 2679 4.811364 GGCTGCTTCCTGCTCCCC 62.811 72.222 0.00 0.00 43.37 4.81
1486 2695 0.251354 CCCCAGTGTCTGATCTGGTG 59.749 60.000 21.53 12.56 46.79 4.17
1500 2709 2.958818 TCTGGTGTTGAGGTGTAGAGT 58.041 47.619 0.00 0.00 0.00 3.24
1546 2758 1.816835 TCTGTGGTAGTAAGGCTCGTG 59.183 52.381 0.00 0.00 0.00 4.35
1580 2798 2.642427 TGGTGTGATGTATGTGATGGC 58.358 47.619 0.00 0.00 0.00 4.40
1582 2800 3.216800 GGTGTGATGTATGTGATGGCAT 58.783 45.455 0.00 0.00 0.00 4.40
1654 2908 4.008330 CCTGCTTGTTTGTCTGATCTCAT 58.992 43.478 0.00 0.00 0.00 2.90
1656 2971 5.821470 CCTGCTTGTTTGTCTGATCTCATAT 59.179 40.000 0.00 0.00 0.00 1.78
1658 2973 5.065602 TGCTTGTTTGTCTGATCTCATATGC 59.934 40.000 0.00 0.00 0.00 3.14
1675 2990 0.179702 TGCTGCCACTGGATCTGATC 59.820 55.000 9.18 9.18 0.00 2.92
1693 3013 4.843728 TGATCCACTATGTTCCTTTCCAC 58.156 43.478 0.00 0.00 0.00 4.02
1694 3014 3.328382 TCCACTATGTTCCTTTCCACG 57.672 47.619 0.00 0.00 0.00 4.94
1695 3015 1.737793 CCACTATGTTCCTTTCCACGC 59.262 52.381 0.00 0.00 0.00 5.34
1696 3016 2.422597 CACTATGTTCCTTTCCACGCA 58.577 47.619 0.00 0.00 0.00 5.24
1708 3135 2.791383 TCCACGCAATTTTTCCACTG 57.209 45.000 0.00 0.00 0.00 3.66
1710 3137 2.034053 TCCACGCAATTTTTCCACTGTC 59.966 45.455 0.00 0.00 0.00 3.51
1767 3203 5.645497 ACATAGTGGATTGTCTCTTCTTTGC 59.355 40.000 0.00 0.00 0.00 3.68
1862 3305 5.067954 AGGTTGTCCCATAAACAAGTGTAC 58.932 41.667 0.00 0.00 37.30 2.90
1863 3306 5.067954 GGTTGTCCCATAAACAAGTGTACT 58.932 41.667 0.00 0.00 37.30 2.73
2019 3520 8.178313 GCACTCTGTTGAAGGATTAATAAACTC 58.822 37.037 0.00 0.00 0.00 3.01
2118 3619 8.696043 ATAGGCATTTGTTATTAATCAGAGCA 57.304 30.769 0.00 0.00 0.00 4.26
2119 3620 7.035840 AGGCATTTGTTATTAATCAGAGCAG 57.964 36.000 0.00 0.00 0.00 4.24
2120 3621 5.689068 GGCATTTGTTATTAATCAGAGCAGC 59.311 40.000 0.00 0.00 0.00 5.25
2121 3622 6.267817 GCATTTGTTATTAATCAGAGCAGCA 58.732 36.000 0.00 0.00 0.00 4.41
2122 3623 6.197842 GCATTTGTTATTAATCAGAGCAGCAC 59.802 38.462 0.00 0.00 0.00 4.40
2123 3624 6.816134 TTTGTTATTAATCAGAGCAGCACA 57.184 33.333 0.00 0.00 0.00 4.57
2124 3625 7.395190 TTTGTTATTAATCAGAGCAGCACAT 57.605 32.000 0.00 0.00 0.00 3.21
2131 3642 7.628769 TTAATCAGAGCAGCACATTATCAAA 57.371 32.000 0.00 0.00 0.00 2.69
2295 3807 2.661176 AGGTTGTAGGGGAAGGATGA 57.339 50.000 0.00 0.00 0.00 2.92
2445 3979 7.765695 TGCTTGATTCCAAAAAGAGTCTTAT 57.234 32.000 5.65 0.00 0.00 1.73
2617 4154 3.760035 GCGGAACTCCTCGAGGCA 61.760 66.667 27.39 14.38 33.35 4.75
2696 4234 2.100989 GTCCTCCGGAATGTAGTCTGT 58.899 52.381 5.23 0.00 31.38 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.038863 AGTATGGTGGGAGTTGTGGA 57.961 50.000 0.00 0.00 0.00 4.02
1 2 2.420129 GCTAGTATGGTGGGAGTTGTGG 60.420 54.545 0.00 0.00 0.00 4.17
5 6 0.464452 GCGCTAGTATGGTGGGAGTT 59.536 55.000 0.00 0.00 0.00 3.01
6 7 0.686441 TGCGCTAGTATGGTGGGAGT 60.686 55.000 9.73 0.00 0.00 3.85
7 8 0.464036 TTGCGCTAGTATGGTGGGAG 59.536 55.000 9.73 0.00 0.00 4.30
8 9 0.177141 GTTGCGCTAGTATGGTGGGA 59.823 55.000 9.73 0.00 0.00 4.37
9 10 0.107897 TGTTGCGCTAGTATGGTGGG 60.108 55.000 9.73 0.00 0.00 4.61
10 11 1.732941 TTGTTGCGCTAGTATGGTGG 58.267 50.000 9.73 0.00 0.00 4.61
11 12 4.119862 ACTATTGTTGCGCTAGTATGGTG 58.880 43.478 9.73 0.00 0.00 4.17
12 13 4.402056 ACTATTGTTGCGCTAGTATGGT 57.598 40.909 9.73 2.65 0.00 3.55
13 14 4.381863 CGTACTATTGTTGCGCTAGTATGG 59.618 45.833 18.42 10.55 33.94 2.74
14 15 5.209977 TCGTACTATTGTTGCGCTAGTATG 58.790 41.667 19.43 19.43 36.76 2.39
15 16 5.428496 TCGTACTATTGTTGCGCTAGTAT 57.572 39.130 9.73 0.00 32.31 2.12
16 17 4.880886 TCGTACTATTGTTGCGCTAGTA 57.119 40.909 9.73 9.19 0.00 1.82
17 18 3.770263 TCGTACTATTGTTGCGCTAGT 57.230 42.857 9.73 10.28 0.00 2.57
18 19 3.486108 CCTTCGTACTATTGTTGCGCTAG 59.514 47.826 9.73 3.75 0.00 3.42
19 20 3.119388 ACCTTCGTACTATTGTTGCGCTA 60.119 43.478 9.73 0.00 0.00 4.26
20 21 2.268298 CCTTCGTACTATTGTTGCGCT 58.732 47.619 9.73 0.00 0.00 5.92
21 22 1.997606 ACCTTCGTACTATTGTTGCGC 59.002 47.619 0.00 0.00 0.00 6.09
22 23 3.508762 AGACCTTCGTACTATTGTTGCG 58.491 45.455 0.00 0.00 0.00 4.85
23 24 5.407387 TGAAAGACCTTCGTACTATTGTTGC 59.593 40.000 0.00 0.00 36.78 4.17
24 25 7.456253 CATGAAAGACCTTCGTACTATTGTTG 58.544 38.462 0.00 0.00 36.78 3.33
25 26 6.092259 GCATGAAAGACCTTCGTACTATTGTT 59.908 38.462 0.00 0.00 36.78 2.83
26 27 5.581085 GCATGAAAGACCTTCGTACTATTGT 59.419 40.000 0.00 0.00 36.78 2.71
27 28 5.812642 AGCATGAAAGACCTTCGTACTATTG 59.187 40.000 0.00 0.00 36.78 1.90
28 29 5.978814 AGCATGAAAGACCTTCGTACTATT 58.021 37.500 0.00 0.00 36.78 1.73
29 30 5.127194 TGAGCATGAAAGACCTTCGTACTAT 59.873 40.000 0.00 0.00 36.78 2.12
30 31 4.461431 TGAGCATGAAAGACCTTCGTACTA 59.539 41.667 0.00 0.00 36.78 1.82
31 32 3.258372 TGAGCATGAAAGACCTTCGTACT 59.742 43.478 0.00 0.00 36.78 2.73
32 33 3.585862 TGAGCATGAAAGACCTTCGTAC 58.414 45.455 0.00 0.00 36.78 3.67
33 34 3.953712 TGAGCATGAAAGACCTTCGTA 57.046 42.857 0.00 0.00 36.78 3.43
34 35 2.839486 TGAGCATGAAAGACCTTCGT 57.161 45.000 0.00 0.00 36.78 3.85
35 36 2.223203 GCATGAGCATGAAAGACCTTCG 60.223 50.000 14.27 0.00 41.20 3.79
36 37 2.098770 GGCATGAGCATGAAAGACCTTC 59.901 50.000 14.27 0.00 44.61 3.46
37 38 2.097825 GGCATGAGCATGAAAGACCTT 58.902 47.619 14.27 0.00 44.61 3.50
38 39 1.005097 TGGCATGAGCATGAAAGACCT 59.995 47.619 14.27 0.00 44.61 3.85
39 40 1.466856 TGGCATGAGCATGAAAGACC 58.533 50.000 14.27 5.99 44.61 3.85
40 41 2.950309 AGATGGCATGAGCATGAAAGAC 59.050 45.455 14.27 1.91 44.61 3.01
41 42 3.292492 AGATGGCATGAGCATGAAAGA 57.708 42.857 14.27 0.00 44.61 2.52
42 43 5.335740 GGATTAGATGGCATGAGCATGAAAG 60.336 44.000 14.27 0.00 44.61 2.62
43 44 4.521639 GGATTAGATGGCATGAGCATGAAA 59.478 41.667 14.27 1.80 44.61 2.69
44 45 4.077108 GGATTAGATGGCATGAGCATGAA 58.923 43.478 14.27 2.14 44.61 2.57
45 46 3.329814 AGGATTAGATGGCATGAGCATGA 59.670 43.478 14.27 0.00 44.61 3.07
46 47 3.687125 AGGATTAGATGGCATGAGCATG 58.313 45.455 3.81 6.11 44.61 4.06
47 48 3.619242 CGAGGATTAGATGGCATGAGCAT 60.619 47.826 3.81 0.00 44.61 3.79
48 49 2.289257 CGAGGATTAGATGGCATGAGCA 60.289 50.000 3.81 0.00 44.61 4.26
49 50 2.344950 CGAGGATTAGATGGCATGAGC 58.655 52.381 3.81 0.00 41.10 4.26
50 51 2.028294 AGCGAGGATTAGATGGCATGAG 60.028 50.000 3.81 0.00 0.00 2.90
51 52 1.973515 AGCGAGGATTAGATGGCATGA 59.026 47.619 3.81 0.00 0.00 3.07
52 53 2.469274 AGCGAGGATTAGATGGCATG 57.531 50.000 3.81 0.00 0.00 4.06
53 54 2.551721 CCAAGCGAGGATTAGATGGCAT 60.552 50.000 0.00 0.00 0.00 4.40
54 55 1.202687 CCAAGCGAGGATTAGATGGCA 60.203 52.381 0.00 0.00 0.00 4.92
55 56 1.517242 CCAAGCGAGGATTAGATGGC 58.483 55.000 0.00 0.00 0.00 4.40
56 57 1.202687 TGCCAAGCGAGGATTAGATGG 60.203 52.381 1.32 0.00 0.00 3.51
57 58 2.245159 TGCCAAGCGAGGATTAGATG 57.755 50.000 1.32 0.00 0.00 2.90
58 59 2.171448 AGTTGCCAAGCGAGGATTAGAT 59.829 45.455 1.32 0.00 0.00 1.98
59 60 1.555075 AGTTGCCAAGCGAGGATTAGA 59.445 47.619 1.32 0.00 0.00 2.10
60 61 1.667724 CAGTTGCCAAGCGAGGATTAG 59.332 52.381 1.32 0.00 0.00 1.73
61 62 1.737838 CAGTTGCCAAGCGAGGATTA 58.262 50.000 1.32 0.00 0.00 1.75
62 63 1.589716 GCAGTTGCCAAGCGAGGATT 61.590 55.000 1.32 0.00 34.31 3.01
63 64 2.042831 GCAGTTGCCAAGCGAGGAT 61.043 57.895 1.32 0.00 34.31 3.24
64 65 2.669569 GCAGTTGCCAAGCGAGGA 60.670 61.111 1.32 0.00 34.31 3.71
74 75 4.133796 GGCGGAATGGGCAGTTGC 62.134 66.667 0.00 0.00 41.14 4.17
75 76 2.676121 TGGCGGAATGGGCAGTTG 60.676 61.111 0.00 0.00 37.59 3.16
82 83 3.499737 GACACGCTGGCGGAATGG 61.500 66.667 18.99 5.78 44.69 3.16
83 84 2.034879 AAGACACGCTGGCGGAATG 61.035 57.895 18.99 10.65 44.69 2.67
84 85 2.034879 CAAGACACGCTGGCGGAAT 61.035 57.895 18.99 3.92 44.69 3.01
85 86 2.664851 CAAGACACGCTGGCGGAA 60.665 61.111 18.99 0.00 44.69 4.30
86 87 3.454587 AACAAGACACGCTGGCGGA 62.455 57.895 18.99 0.00 44.69 5.54
87 88 2.972505 AACAAGACACGCTGGCGG 60.973 61.111 18.99 10.29 44.69 6.13
88 89 2.162921 CTCAACAAGACACGCTGGCG 62.163 60.000 13.56 13.56 46.03 5.69
89 90 0.880278 TCTCAACAAGACACGCTGGC 60.880 55.000 0.00 0.00 0.00 4.85
90 91 1.462283 CATCTCAACAAGACACGCTGG 59.538 52.381 0.00 0.00 36.65 4.85
91 92 1.462283 CCATCTCAACAAGACACGCTG 59.538 52.381 0.00 0.00 36.65 5.18
92 93 1.609061 CCCATCTCAACAAGACACGCT 60.609 52.381 0.00 0.00 36.65 5.07
93 94 0.798776 CCCATCTCAACAAGACACGC 59.201 55.000 0.00 0.00 36.65 5.34
94 95 1.270839 ACCCCATCTCAACAAGACACG 60.271 52.381 0.00 0.00 36.65 4.49
95 96 2.427506 GACCCCATCTCAACAAGACAC 58.572 52.381 0.00 0.00 36.65 3.67
96 97 1.351017 GGACCCCATCTCAACAAGACA 59.649 52.381 0.00 0.00 36.65 3.41
97 98 1.351017 TGGACCCCATCTCAACAAGAC 59.649 52.381 0.00 0.00 36.65 3.01
98 99 1.741028 TGGACCCCATCTCAACAAGA 58.259 50.000 0.00 0.00 38.72 3.02
99 100 2.584835 TTGGACCCCATCTCAACAAG 57.415 50.000 0.00 0.00 31.53 3.16
100 101 2.291540 GGATTGGACCCCATCTCAACAA 60.292 50.000 0.93 0.00 31.53 2.83
101 102 1.284785 GGATTGGACCCCATCTCAACA 59.715 52.381 0.93 0.00 31.53 3.33
102 103 1.747206 CGGATTGGACCCCATCTCAAC 60.747 57.143 0.93 0.00 31.53 3.18
103 104 0.546122 CGGATTGGACCCCATCTCAA 59.454 55.000 0.93 0.00 31.53 3.02
104 105 1.344953 CCGGATTGGACCCCATCTCA 61.345 60.000 0.00 0.00 42.00 3.27
105 106 1.451936 CCGGATTGGACCCCATCTC 59.548 63.158 0.00 0.00 42.00 2.75
106 107 2.757124 GCCGGATTGGACCCCATCT 61.757 63.158 5.05 0.00 42.00 2.90
107 108 2.203351 GCCGGATTGGACCCCATC 60.203 66.667 5.05 0.00 42.00 3.51
108 109 2.316586 AAGCCGGATTGGACCCCAT 61.317 57.895 2.94 0.00 42.00 4.00
109 110 2.938798 AAGCCGGATTGGACCCCA 60.939 61.111 2.94 0.00 42.00 4.96
110 111 2.440247 CAAGCCGGATTGGACCCC 60.440 66.667 24.73 0.00 42.00 4.95
111 112 3.140814 GCAAGCCGGATTGGACCC 61.141 66.667 31.83 12.99 42.00 4.46
112 113 3.140814 GGCAAGCCGGATTGGACC 61.141 66.667 31.83 21.94 42.00 4.46
113 114 3.140814 GGGCAAGCCGGATTGGAC 61.141 66.667 31.83 17.10 42.00 4.02
114 115 3.216985 TTGGGCAAGCCGGATTGGA 62.217 57.895 31.83 0.00 42.00 3.53
115 116 2.679642 TTGGGCAAGCCGGATTGG 60.680 61.111 31.83 15.07 42.50 3.16
116 117 2.713967 CCTTGGGCAAGCCGGATTG 61.714 63.158 27.79 27.79 37.11 2.67
117 118 2.362889 CCTTGGGCAAGCCGGATT 60.363 61.111 5.05 0.00 37.11 3.01
128 129 1.225704 GGATCTGTGAGGCCTTGGG 59.774 63.158 6.77 0.00 0.00 4.12
129 130 0.179936 GAGGATCTGTGAGGCCTTGG 59.820 60.000 6.77 0.00 0.00 3.61
130 131 0.907486 TGAGGATCTGTGAGGCCTTG 59.093 55.000 6.77 0.00 34.92 3.61
131 132 0.908198 GTGAGGATCTGTGAGGCCTT 59.092 55.000 6.77 0.00 34.92 4.35
132 133 0.980231 GGTGAGGATCTGTGAGGCCT 60.980 60.000 3.86 3.86 34.92 5.19
133 134 1.524482 GGTGAGGATCTGTGAGGCC 59.476 63.158 0.00 0.00 34.92 5.19
134 135 1.267574 TGGGTGAGGATCTGTGAGGC 61.268 60.000 0.00 0.00 34.92 4.70
135 136 1.209019 CTTGGGTGAGGATCTGTGAGG 59.791 57.143 0.00 0.00 34.92 3.86
136 137 1.905215 ACTTGGGTGAGGATCTGTGAG 59.095 52.381 0.00 0.00 34.92 3.51
137 138 2.030027 ACTTGGGTGAGGATCTGTGA 57.970 50.000 0.00 0.00 34.92 3.58
138 139 2.834549 ACTACTTGGGTGAGGATCTGTG 59.165 50.000 0.00 0.00 34.92 3.66
139 140 3.100671 GACTACTTGGGTGAGGATCTGT 58.899 50.000 0.00 0.00 34.92 3.41
140 141 2.432510 GGACTACTTGGGTGAGGATCTG 59.567 54.545 0.00 0.00 34.92 2.90
141 142 2.316372 AGGACTACTTGGGTGAGGATCT 59.684 50.000 0.00 0.00 34.92 2.75
142 143 2.753247 AGGACTACTTGGGTGAGGATC 58.247 52.381 0.00 0.00 0.00 3.36
143 144 2.950990 AGGACTACTTGGGTGAGGAT 57.049 50.000 0.00 0.00 0.00 3.24
144 145 2.623502 GCTAGGACTACTTGGGTGAGGA 60.624 54.545 0.00 0.00 0.00 3.71
145 146 1.757699 GCTAGGACTACTTGGGTGAGG 59.242 57.143 0.00 0.00 0.00 3.86
146 147 2.457598 TGCTAGGACTACTTGGGTGAG 58.542 52.381 0.00 0.00 0.00 3.51
147 148 2.615986 TGCTAGGACTACTTGGGTGA 57.384 50.000 0.00 0.00 0.00 4.02
148 149 3.260884 TCTTTGCTAGGACTACTTGGGTG 59.739 47.826 0.00 0.00 0.00 4.61
149 150 3.261137 GTCTTTGCTAGGACTACTTGGGT 59.739 47.826 3.23 0.00 0.00 4.51
150 151 3.676324 CGTCTTTGCTAGGACTACTTGGG 60.676 52.174 8.61 0.00 0.00 4.12
151 152 3.512680 CGTCTTTGCTAGGACTACTTGG 58.487 50.000 8.61 0.00 0.00 3.61
152 153 2.924290 GCGTCTTTGCTAGGACTACTTG 59.076 50.000 8.61 0.00 0.00 3.16
153 154 2.561419 TGCGTCTTTGCTAGGACTACTT 59.439 45.455 8.61 0.00 35.36 2.24
154 155 2.168496 TGCGTCTTTGCTAGGACTACT 58.832 47.619 8.61 0.00 35.36 2.57
155 156 2.649331 TGCGTCTTTGCTAGGACTAC 57.351 50.000 8.61 1.98 35.36 2.73
156 157 2.561419 ACTTGCGTCTTTGCTAGGACTA 59.439 45.455 8.61 0.00 41.18 2.59
157 158 1.344763 ACTTGCGTCTTTGCTAGGACT 59.655 47.619 8.61 0.00 41.18 3.85
158 159 1.461127 CACTTGCGTCTTTGCTAGGAC 59.539 52.381 0.29 0.29 41.18 3.85
159 160 1.343142 TCACTTGCGTCTTTGCTAGGA 59.657 47.619 2.60 0.00 41.18 2.94
160 161 1.728971 CTCACTTGCGTCTTTGCTAGG 59.271 52.381 2.60 0.00 41.18 3.02
161 162 2.408050 ACTCACTTGCGTCTTTGCTAG 58.592 47.619 0.00 0.00 42.32 3.42
162 163 2.526304 ACTCACTTGCGTCTTTGCTA 57.474 45.000 0.00 0.00 35.36 3.49
163 164 2.035961 TCTACTCACTTGCGTCTTTGCT 59.964 45.455 0.00 0.00 35.36 3.91
164 165 2.404215 TCTACTCACTTGCGTCTTTGC 58.596 47.619 0.00 0.00 0.00 3.68
165 166 4.449068 ACATTCTACTCACTTGCGTCTTTG 59.551 41.667 0.00 0.00 0.00 2.77
166 167 4.449068 CACATTCTACTCACTTGCGTCTTT 59.551 41.667 0.00 0.00 0.00 2.52
167 168 3.990469 CACATTCTACTCACTTGCGTCTT 59.010 43.478 0.00 0.00 0.00 3.01
168 169 3.579709 CACATTCTACTCACTTGCGTCT 58.420 45.455 0.00 0.00 0.00 4.18
169 170 2.668457 CCACATTCTACTCACTTGCGTC 59.332 50.000 0.00 0.00 0.00 5.19
170 171 2.037251 ACCACATTCTACTCACTTGCGT 59.963 45.455 0.00 0.00 0.00 5.24
171 172 2.688507 ACCACATTCTACTCACTTGCG 58.311 47.619 0.00 0.00 0.00 4.85
172 173 6.743575 ATTAACCACATTCTACTCACTTGC 57.256 37.500 0.00 0.00 0.00 4.01
173 174 8.099364 ACAATTAACCACATTCTACTCACTTG 57.901 34.615 0.00 0.00 0.00 3.16
174 175 8.691661 AACAATTAACCACATTCTACTCACTT 57.308 30.769 0.00 0.00 0.00 3.16
175 176 8.691661 AAACAATTAACCACATTCTACTCACT 57.308 30.769 0.00 0.00 0.00 3.41
176 177 8.021396 GGAAACAATTAACCACATTCTACTCAC 58.979 37.037 0.00 0.00 0.00 3.51
177 178 7.942341 AGGAAACAATTAACCACATTCTACTCA 59.058 33.333 0.00 0.00 0.00 3.41
178 179 8.336801 AGGAAACAATTAACCACATTCTACTC 57.663 34.615 0.00 0.00 0.00 2.59
179 180 7.393515 GGAGGAAACAATTAACCACATTCTACT 59.606 37.037 0.00 0.00 0.00 2.57
180 181 7.393515 AGGAGGAAACAATTAACCACATTCTAC 59.606 37.037 0.00 0.00 0.00 2.59
181 182 7.466804 AGGAGGAAACAATTAACCACATTCTA 58.533 34.615 0.00 0.00 0.00 2.10
182 183 6.314917 AGGAGGAAACAATTAACCACATTCT 58.685 36.000 0.00 0.00 0.00 2.40
183 184 6.350194 GGAGGAGGAAACAATTAACCACATTC 60.350 42.308 0.00 0.00 0.00 2.67
184 185 5.480422 GGAGGAGGAAACAATTAACCACATT 59.520 40.000 0.00 0.00 0.00 2.71
185 186 5.016831 GGAGGAGGAAACAATTAACCACAT 58.983 41.667 0.00 0.00 0.00 3.21
186 187 4.105697 AGGAGGAGGAAACAATTAACCACA 59.894 41.667 0.00 0.00 0.00 4.17
187 188 4.459337 CAGGAGGAGGAAACAATTAACCAC 59.541 45.833 0.00 0.00 0.00 4.16
188 189 4.508405 CCAGGAGGAGGAAACAATTAACCA 60.508 45.833 0.00 0.00 36.89 3.67
189 190 4.017126 CCAGGAGGAGGAAACAATTAACC 58.983 47.826 0.00 0.00 36.89 2.85
190 191 4.663334 ACCAGGAGGAGGAAACAATTAAC 58.337 43.478 0.00 0.00 38.69 2.01
191 192 4.352595 TGACCAGGAGGAGGAAACAATTAA 59.647 41.667 0.00 0.00 38.69 1.40
192 193 3.913799 TGACCAGGAGGAGGAAACAATTA 59.086 43.478 0.00 0.00 38.69 1.40
193 194 2.716424 TGACCAGGAGGAGGAAACAATT 59.284 45.455 0.00 0.00 38.69 2.32
194 195 2.040412 GTGACCAGGAGGAGGAAACAAT 59.960 50.000 0.00 0.00 38.69 2.71
195 196 1.420138 GTGACCAGGAGGAGGAAACAA 59.580 52.381 0.00 0.00 38.69 2.83
196 197 1.056660 GTGACCAGGAGGAGGAAACA 58.943 55.000 0.00 0.00 38.69 2.83
197 198 1.056660 TGTGACCAGGAGGAGGAAAC 58.943 55.000 0.00 0.00 38.69 2.78
198 199 1.814429 TTGTGACCAGGAGGAGGAAA 58.186 50.000 0.00 0.00 38.69 3.13
199 200 1.814429 TTTGTGACCAGGAGGAGGAA 58.186 50.000 0.00 0.00 38.69 3.36
200 201 1.420138 GTTTTGTGACCAGGAGGAGGA 59.580 52.381 0.00 0.00 38.69 3.71
201 202 1.878102 CGTTTTGTGACCAGGAGGAGG 60.878 57.143 0.00 0.00 38.69 4.30
202 203 1.512926 CGTTTTGTGACCAGGAGGAG 58.487 55.000 0.00 0.00 38.69 3.69
203 204 0.107831 CCGTTTTGTGACCAGGAGGA 59.892 55.000 0.00 0.00 38.69 3.71
204 205 0.889186 CCCGTTTTGTGACCAGGAGG 60.889 60.000 0.00 0.00 42.21 4.30
205 206 1.515521 GCCCGTTTTGTGACCAGGAG 61.516 60.000 0.00 0.00 0.00 3.69
206 207 1.527380 GCCCGTTTTGTGACCAGGA 60.527 57.895 0.00 0.00 0.00 3.86
207 208 1.826054 TGCCCGTTTTGTGACCAGG 60.826 57.895 0.00 0.00 0.00 4.45
208 209 1.358759 GTGCCCGTTTTGTGACCAG 59.641 57.895 0.00 0.00 0.00 4.00
209 210 2.473760 CGTGCCCGTTTTGTGACCA 61.474 57.895 0.00 0.00 0.00 4.02
210 211 2.330041 CGTGCCCGTTTTGTGACC 59.670 61.111 0.00 0.00 0.00 4.02
211 212 2.353030 GCGTGCCCGTTTTGTGAC 60.353 61.111 0.00 0.00 36.15 3.67
212 213 3.943034 CGCGTGCCCGTTTTGTGA 61.943 61.111 0.00 0.00 36.15 3.58
213 214 4.244802 ACGCGTGCCCGTTTTGTG 62.245 61.111 12.93 0.00 38.47 3.33
224 225 4.374702 GCTGCACCAGAACGCGTG 62.375 66.667 14.98 1.65 32.44 5.34
225 226 4.908687 TGCTGCACCAGAACGCGT 62.909 61.111 5.58 5.58 32.44 6.01
226 227 4.081030 CTGCTGCACCAGAACGCG 62.081 66.667 3.53 3.53 34.77 6.01
227 228 4.395583 GCTGCTGCACCAGAACGC 62.396 66.667 13.32 0.00 39.41 4.84
228 229 3.730761 GGCTGCTGCACCAGAACG 61.731 66.667 17.89 0.00 41.91 3.95
229 230 3.368571 GGGCTGCTGCACCAGAAC 61.369 66.667 17.89 4.60 41.91 3.01
230 231 3.557903 GAGGGCTGCTGCACCAGAA 62.558 63.158 14.92 0.00 45.43 3.02
231 232 4.025858 GAGGGCTGCTGCACCAGA 62.026 66.667 14.92 0.00 45.43 3.86
232 233 3.972971 GAGAGGGCTGCTGCACCAG 62.973 68.421 14.92 4.55 45.43 4.00
233 234 4.025858 GAGAGGGCTGCTGCACCA 62.026 66.667 14.92 0.00 45.43 4.17
234 235 4.792804 GGAGAGGGCTGCTGCACC 62.793 72.222 14.92 13.78 45.43 5.01
235 236 3.678951 GAGGAGAGGGCTGCTGCAC 62.679 68.421 17.89 14.38 43.46 4.57
236 237 3.397439 GAGGAGAGGGCTGCTGCA 61.397 66.667 17.89 0.88 43.46 4.41
237 238 4.527583 CGAGGAGAGGGCTGCTGC 62.528 72.222 7.10 7.10 43.46 5.25
238 239 4.527583 GCGAGGAGAGGGCTGCTG 62.528 72.222 0.00 0.00 43.46 4.41
240 241 4.087892 TTGCGAGGAGAGGGCTGC 62.088 66.667 0.00 0.00 0.00 5.25
241 242 2.177594 AACTTGCGAGGAGAGGGCTG 62.178 60.000 5.79 0.00 0.00 4.85
242 243 1.915769 AACTTGCGAGGAGAGGGCT 60.916 57.895 5.79 0.00 0.00 5.19
243 244 1.743252 CAACTTGCGAGGAGAGGGC 60.743 63.158 5.79 0.00 0.00 5.19
244 245 0.539051 ATCAACTTGCGAGGAGAGGG 59.461 55.000 5.79 0.00 0.00 4.30
245 246 1.472376 GGATCAACTTGCGAGGAGAGG 60.472 57.143 5.79 0.00 0.00 3.69
246 247 1.800655 CGGATCAACTTGCGAGGAGAG 60.801 57.143 5.79 0.00 31.44 3.20
247 248 0.173481 CGGATCAACTTGCGAGGAGA 59.827 55.000 5.79 2.92 31.44 3.71
248 249 0.173481 TCGGATCAACTTGCGAGGAG 59.827 55.000 5.79 0.00 34.39 3.69
249 250 0.108804 GTCGGATCAACTTGCGAGGA 60.109 55.000 5.79 0.00 40.20 3.71
250 251 1.413767 CGTCGGATCAACTTGCGAGG 61.414 60.000 5.79 0.00 40.20 4.63
251 252 0.732880 ACGTCGGATCAACTTGCGAG 60.733 55.000 0.00 0.00 40.20 5.03
252 253 0.731514 GACGTCGGATCAACTTGCGA 60.732 55.000 0.00 0.00 37.11 5.10
253 254 1.683790 GGACGTCGGATCAACTTGCG 61.684 60.000 9.92 0.00 0.00 4.85
254 255 0.669318 TGGACGTCGGATCAACTTGC 60.669 55.000 9.92 0.00 0.00 4.01
255 256 1.459592 GTTGGACGTCGGATCAACTTG 59.540 52.381 21.05 0.00 37.21 3.16
256 257 1.069513 TGTTGGACGTCGGATCAACTT 59.930 47.619 25.48 0.00 39.87 2.66
257 258 0.677288 TGTTGGACGTCGGATCAACT 59.323 50.000 25.48 0.00 39.87 3.16
258 259 0.788391 GTGTTGGACGTCGGATCAAC 59.212 55.000 21.36 21.36 39.68 3.18
259 260 0.320073 GGTGTTGGACGTCGGATCAA 60.320 55.000 9.92 5.15 0.00 2.57
260 261 1.183030 AGGTGTTGGACGTCGGATCA 61.183 55.000 9.92 0.00 0.00 2.92
261 262 0.813184 TAGGTGTTGGACGTCGGATC 59.187 55.000 9.92 0.00 0.00 3.36
262 263 1.407979 GATAGGTGTTGGACGTCGGAT 59.592 52.381 9.92 0.00 0.00 4.18
263 264 0.813184 GATAGGTGTTGGACGTCGGA 59.187 55.000 9.92 0.00 0.00 4.55
264 265 0.179119 GGATAGGTGTTGGACGTCGG 60.179 60.000 9.92 0.00 0.00 4.79
265 266 0.179119 GGGATAGGTGTTGGACGTCG 60.179 60.000 9.92 0.00 0.00 5.12
266 267 1.134788 CAGGGATAGGTGTTGGACGTC 60.135 57.143 7.13 7.13 0.00 4.34
267 268 0.902531 CAGGGATAGGTGTTGGACGT 59.097 55.000 0.00 0.00 0.00 4.34
268 269 1.137086 CTCAGGGATAGGTGTTGGACG 59.863 57.143 0.00 0.00 0.00 4.79
269 270 1.486726 CCTCAGGGATAGGTGTTGGAC 59.513 57.143 0.00 0.00 33.58 4.02
270 271 1.879575 CCTCAGGGATAGGTGTTGGA 58.120 55.000 0.00 0.00 33.58 3.53
283 284 1.604593 CACTTGGTTGGCCCTCAGG 60.605 63.158 0.00 0.00 0.00 3.86
284 285 0.178992 TTCACTTGGTTGGCCCTCAG 60.179 55.000 0.00 0.00 0.00 3.35
285 286 0.260230 TTTCACTTGGTTGGCCCTCA 59.740 50.000 0.00 0.00 0.00 3.86
286 287 1.408969 TTTTCACTTGGTTGGCCCTC 58.591 50.000 0.00 0.00 0.00 4.30
287 288 1.872773 TTTTTCACTTGGTTGGCCCT 58.127 45.000 0.00 0.00 0.00 5.19
288 289 2.368548 AGATTTTTCACTTGGTTGGCCC 59.631 45.455 0.00 0.00 0.00 5.80
289 290 3.392882 CAGATTTTTCACTTGGTTGGCC 58.607 45.455 0.00 0.00 0.00 5.36
290 291 2.802247 GCAGATTTTTCACTTGGTTGGC 59.198 45.455 0.00 0.00 0.00 4.52
291 292 3.803778 GTGCAGATTTTTCACTTGGTTGG 59.196 43.478 0.00 0.00 0.00 3.77
292 293 3.803778 GGTGCAGATTTTTCACTTGGTTG 59.196 43.478 0.00 0.00 0.00 3.77
293 294 3.450457 TGGTGCAGATTTTTCACTTGGTT 59.550 39.130 0.00 0.00 0.00 3.67
294 295 3.030291 TGGTGCAGATTTTTCACTTGGT 58.970 40.909 0.00 0.00 0.00 3.67
295 296 3.731652 TGGTGCAGATTTTTCACTTGG 57.268 42.857 0.00 0.00 0.00 3.61
296 297 4.873817 TCATGGTGCAGATTTTTCACTTG 58.126 39.130 0.00 0.00 0.00 3.16
297 298 4.021719 CCTCATGGTGCAGATTTTTCACTT 60.022 41.667 0.00 0.00 0.00 3.16
298 299 3.508793 CCTCATGGTGCAGATTTTTCACT 59.491 43.478 0.00 0.00 0.00 3.41
299 300 3.367703 CCCTCATGGTGCAGATTTTTCAC 60.368 47.826 0.00 0.00 0.00 3.18
300 301 2.827322 CCCTCATGGTGCAGATTTTTCA 59.173 45.455 0.00 0.00 0.00 2.69
301 302 3.515330 CCCTCATGGTGCAGATTTTTC 57.485 47.619 0.00 0.00 0.00 2.29
313 314 2.034879 GTCACGTGCACCCTCATGG 61.035 63.158 11.67 0.00 41.37 3.66
314 315 0.603707 AAGTCACGTGCACCCTCATG 60.604 55.000 11.67 2.40 0.00 3.07
315 316 0.320771 GAAGTCACGTGCACCCTCAT 60.321 55.000 11.67 0.00 0.00 2.90
316 317 1.069090 GAAGTCACGTGCACCCTCA 59.931 57.895 11.67 0.00 0.00 3.86
317 318 1.668151 GGAAGTCACGTGCACCCTC 60.668 63.158 11.67 9.35 0.00 4.30
318 319 1.978455 TTGGAAGTCACGTGCACCCT 61.978 55.000 11.67 0.67 0.00 4.34
319 320 1.507141 CTTGGAAGTCACGTGCACCC 61.507 60.000 11.67 9.68 0.00 4.61
320 321 0.814010 ACTTGGAAGTCACGTGCACC 60.814 55.000 11.67 13.34 32.86 5.01
321 322 2.690326 ACTTGGAAGTCACGTGCAC 58.310 52.632 11.67 6.82 32.86 4.57
330 331 0.250513 GGCGGATCTGACTTGGAAGT 59.749 55.000 5.48 0.00 43.16 3.01
331 332 0.250234 TGGCGGATCTGACTTGGAAG 59.750 55.000 9.31 0.00 0.00 3.46
332 333 0.911769 ATGGCGGATCTGACTTGGAA 59.088 50.000 9.31 0.00 0.00 3.53
333 334 0.465705 GATGGCGGATCTGACTTGGA 59.534 55.000 9.31 0.00 0.00 3.53
334 335 0.467384 AGATGGCGGATCTGACTTGG 59.533 55.000 9.31 0.00 40.19 3.61
335 336 1.539929 GGAGATGGCGGATCTGACTTG 60.540 57.143 9.31 0.00 41.91 3.16
336 337 0.755686 GGAGATGGCGGATCTGACTT 59.244 55.000 9.31 1.35 41.91 3.01
337 338 0.105760 AGGAGATGGCGGATCTGACT 60.106 55.000 9.31 0.01 41.91 3.41
338 339 0.316841 GAGGAGATGGCGGATCTGAC 59.683 60.000 5.48 1.97 41.91 3.51
339 340 1.175347 CGAGGAGATGGCGGATCTGA 61.175 60.000 5.48 0.00 41.91 3.27
340 341 1.288439 CGAGGAGATGGCGGATCTG 59.712 63.158 0.00 0.00 41.91 2.90
341 342 3.770589 CGAGGAGATGGCGGATCT 58.229 61.111 0.00 0.00 44.78 2.75
347 348 3.753179 CCATATCGCCGAGGAGATGGC 62.753 61.905 16.84 0.00 45.63 4.40
348 349 0.174389 CCATATCGCCGAGGAGATGG 59.826 60.000 16.84 12.73 46.02 3.51
349 350 0.459237 GCCATATCGCCGAGGAGATG 60.459 60.000 16.84 4.39 36.19 2.90
350 351 1.608717 GGCCATATCGCCGAGGAGAT 61.609 60.000 12.72 12.72 39.64 2.75
351 352 2.276116 GGCCATATCGCCGAGGAGA 61.276 63.158 0.00 0.00 39.64 3.71
352 353 2.262915 GGCCATATCGCCGAGGAG 59.737 66.667 0.00 0.00 39.64 3.69
359 360 2.889045 TCTATATACCGGGCCATATCGC 59.111 50.000 6.32 0.00 0.00 4.58
360 361 4.523173 ACATCTATATACCGGGCCATATCG 59.477 45.833 6.32 0.00 0.00 2.92
361 362 5.775701 AGACATCTATATACCGGGCCATATC 59.224 44.000 6.32 0.00 0.00 1.63
362 363 5.716979 AGACATCTATATACCGGGCCATAT 58.283 41.667 6.32 8.46 0.00 1.78
363 364 5.138758 AGACATCTATATACCGGGCCATA 57.861 43.478 6.32 0.18 0.00 2.74
364 365 3.995636 AGACATCTATATACCGGGCCAT 58.004 45.455 6.32 0.00 0.00 4.40
365 366 3.468071 AGACATCTATATACCGGGCCA 57.532 47.619 6.32 0.00 0.00 5.36
366 367 4.024670 AGAAGACATCTATATACCGGGCC 58.975 47.826 6.32 0.00 36.32 5.80
367 368 5.419471 AGAAGAAGACATCTATATACCGGGC 59.581 44.000 6.32 0.00 37.42 6.13
368 369 7.363094 GGAAGAAGAAGACATCTATATACCGGG 60.363 44.444 6.32 0.00 37.42 5.73
369 370 7.394923 AGGAAGAAGAAGACATCTATATACCGG 59.605 40.741 0.00 0.00 37.42 5.28
370 371 8.343168 AGGAAGAAGAAGACATCTATATACCG 57.657 38.462 0.00 0.00 37.42 4.02
371 372 9.528489 AGAGGAAGAAGAAGACATCTATATACC 57.472 37.037 0.00 0.00 37.42 2.73
374 375 9.881773 AGAAGAGGAAGAAGAAGACATCTATAT 57.118 33.333 0.00 0.00 37.42 0.86
375 376 9.707957 AAGAAGAGGAAGAAGAAGACATCTATA 57.292 33.333 0.00 0.00 37.42 1.31
376 377 8.608185 AAGAAGAGGAAGAAGAAGACATCTAT 57.392 34.615 0.00 0.00 37.42 1.98
377 378 7.671819 TGAAGAAGAGGAAGAAGAAGACATCTA 59.328 37.037 0.00 0.00 37.42 1.98
378 379 6.496565 TGAAGAAGAGGAAGAAGAAGACATCT 59.503 38.462 0.00 0.00 41.32 2.90
379 380 6.696411 TGAAGAAGAGGAAGAAGAAGACATC 58.304 40.000 0.00 0.00 0.00 3.06
380 381 6.678568 TGAAGAAGAGGAAGAAGAAGACAT 57.321 37.500 0.00 0.00 0.00 3.06
381 382 6.678568 ATGAAGAAGAGGAAGAAGAAGACA 57.321 37.500 0.00 0.00 0.00 3.41
382 383 7.119116 GGAAATGAAGAAGAGGAAGAAGAAGAC 59.881 40.741 0.00 0.00 0.00 3.01
383 384 7.017056 AGGAAATGAAGAAGAGGAAGAAGAAGA 59.983 37.037 0.00 0.00 0.00 2.87
384 385 7.119553 CAGGAAATGAAGAAGAGGAAGAAGAAG 59.880 40.741 0.00 0.00 0.00 2.85
385 386 6.939163 CAGGAAATGAAGAAGAGGAAGAAGAA 59.061 38.462 0.00 0.00 0.00 2.52
386 387 6.270927 TCAGGAAATGAAGAAGAGGAAGAAGA 59.729 38.462 0.00 0.00 34.02 2.87
387 388 6.471146 TCAGGAAATGAAGAAGAGGAAGAAG 58.529 40.000 0.00 0.00 34.02 2.85
388 389 6.439636 TCAGGAAATGAAGAAGAGGAAGAA 57.560 37.500 0.00 0.00 34.02 2.52
389 390 6.013032 ACATCAGGAAATGAAGAAGAGGAAGA 60.013 38.462 0.00 0.00 42.53 2.87
390 391 6.179040 ACATCAGGAAATGAAGAAGAGGAAG 58.821 40.000 0.00 0.00 42.53 3.46
391 392 6.131972 ACATCAGGAAATGAAGAAGAGGAA 57.868 37.500 0.00 0.00 42.53 3.36
392 393 5.768980 ACATCAGGAAATGAAGAAGAGGA 57.231 39.130 0.00 0.00 42.53 3.71
393 394 5.942236 TGAACATCAGGAAATGAAGAAGAGG 59.058 40.000 0.00 0.00 42.53 3.69
394 395 7.627298 ATGAACATCAGGAAATGAAGAAGAG 57.373 36.000 0.00 0.00 42.53 2.85
395 396 7.666804 TCAATGAACATCAGGAAATGAAGAAGA 59.333 33.333 0.00 0.00 42.53 2.87
396 397 7.754027 GTCAATGAACATCAGGAAATGAAGAAG 59.246 37.037 0.00 0.00 42.53 2.85
397 398 7.449395 AGTCAATGAACATCAGGAAATGAAGAA 59.551 33.333 0.00 0.00 42.53 2.52
398 399 6.944290 AGTCAATGAACATCAGGAAATGAAGA 59.056 34.615 0.00 0.00 42.53 2.87
399 400 7.154435 AGTCAATGAACATCAGGAAATGAAG 57.846 36.000 0.00 0.00 42.53 3.02
400 401 6.128200 CGAGTCAATGAACATCAGGAAATGAA 60.128 38.462 0.00 0.00 42.53 2.57
401 402 5.352293 CGAGTCAATGAACATCAGGAAATGA 59.648 40.000 0.00 0.00 43.70 2.57
402 403 5.122869 ACGAGTCAATGAACATCAGGAAATG 59.877 40.000 0.00 0.00 0.00 2.32
403 404 5.122869 CACGAGTCAATGAACATCAGGAAAT 59.877 40.000 0.00 0.00 0.00 2.17
404 405 4.452114 CACGAGTCAATGAACATCAGGAAA 59.548 41.667 0.00 0.00 0.00 3.13
405 406 3.996363 CACGAGTCAATGAACATCAGGAA 59.004 43.478 0.00 0.00 0.00 3.36
406 407 3.006859 ACACGAGTCAATGAACATCAGGA 59.993 43.478 0.00 0.00 0.00 3.86
407 408 3.329386 ACACGAGTCAATGAACATCAGG 58.671 45.455 0.00 0.00 0.00 3.86
408 409 4.564372 CCTACACGAGTCAATGAACATCAG 59.436 45.833 0.00 0.00 0.00 2.90
409 410 4.494484 CCTACACGAGTCAATGAACATCA 58.506 43.478 0.00 0.00 0.00 3.07
410 411 3.865745 CCCTACACGAGTCAATGAACATC 59.134 47.826 0.00 0.00 0.00 3.06
411 412 3.260884 ACCCTACACGAGTCAATGAACAT 59.739 43.478 0.00 0.00 0.00 2.71
412 413 2.631062 ACCCTACACGAGTCAATGAACA 59.369 45.455 0.00 0.00 0.00 3.18
413 414 3.314541 ACCCTACACGAGTCAATGAAC 57.685 47.619 0.00 0.00 0.00 3.18
414 415 4.345859 AAACCCTACACGAGTCAATGAA 57.654 40.909 0.00 0.00 0.00 2.57
415 416 4.039973 AGAAAACCCTACACGAGTCAATGA 59.960 41.667 0.00 0.00 0.00 2.57
416 417 4.315803 AGAAAACCCTACACGAGTCAATG 58.684 43.478 0.00 0.00 0.00 2.82
417 418 4.618920 AGAAAACCCTACACGAGTCAAT 57.381 40.909 0.00 0.00 0.00 2.57
418 419 4.124238 CAAGAAAACCCTACACGAGTCAA 58.876 43.478 0.00 0.00 0.00 3.18
419 420 3.493699 CCAAGAAAACCCTACACGAGTCA 60.494 47.826 0.00 0.00 0.00 3.41
420 421 3.064931 CCAAGAAAACCCTACACGAGTC 58.935 50.000 0.00 0.00 0.00 3.36
421 422 2.436911 ACCAAGAAAACCCTACACGAGT 59.563 45.455 0.00 0.00 0.00 4.18
422 423 2.806244 CACCAAGAAAACCCTACACGAG 59.194 50.000 0.00 0.00 0.00 4.18
423 424 2.841215 CACCAAGAAAACCCTACACGA 58.159 47.619 0.00 0.00 0.00 4.35
424 425 1.265905 GCACCAAGAAAACCCTACACG 59.734 52.381 0.00 0.00 0.00 4.49
425 426 2.583143 AGCACCAAGAAAACCCTACAC 58.417 47.619 0.00 0.00 0.00 2.90
426 427 2.955660 CAAGCACCAAGAAAACCCTACA 59.044 45.455 0.00 0.00 0.00 2.74
427 428 2.956333 ACAAGCACCAAGAAAACCCTAC 59.044 45.455 0.00 0.00 0.00 3.18
428 429 2.955660 CACAAGCACCAAGAAAACCCTA 59.044 45.455 0.00 0.00 0.00 3.53
429 430 1.756538 CACAAGCACCAAGAAAACCCT 59.243 47.619 0.00 0.00 0.00 4.34
430 431 1.806247 GCACAAGCACCAAGAAAACCC 60.806 52.381 0.00 0.00 41.58 4.11
431 432 1.570813 GCACAAGCACCAAGAAAACC 58.429 50.000 0.00 0.00 41.58 3.27
443 444 1.493772 TGTACGTACTGTGCACAAGC 58.506 50.000 25.12 12.35 38.35 4.01
444 445 2.096909 GCTTGTACGTACTGTGCACAAG 60.097 50.000 25.12 20.61 44.55 3.16
445 446 1.862201 GCTTGTACGTACTGTGCACAA 59.138 47.619 25.12 11.84 43.25 3.33
446 447 1.202428 TGCTTGTACGTACTGTGCACA 60.202 47.619 25.12 20.37 43.25 4.57
447 448 1.493772 TGCTTGTACGTACTGTGCAC 58.506 50.000 25.12 10.75 43.25 4.57
448 449 1.862201 GTTGCTTGTACGTACTGTGCA 59.138 47.619 25.12 25.09 41.76 4.57
449 450 2.132762 AGTTGCTTGTACGTACTGTGC 58.867 47.619 25.12 23.21 0.00 4.57
450 451 3.639538 AGAGTTGCTTGTACGTACTGTG 58.360 45.455 25.12 15.70 0.00 3.66
451 452 4.317671 AAGAGTTGCTTGTACGTACTGT 57.682 40.909 25.12 1.68 34.93 3.55
452 453 5.006649 CAAAGAGTTGCTTGTACGTACTG 57.993 43.478 25.12 18.23 36.80 2.74
461 462 7.013083 AGATTATATCTGGCAAAGAGTTGCTTG 59.987 37.037 10.93 5.03 46.28 4.01
462 463 7.059156 AGATTATATCTGGCAAAGAGTTGCTT 58.941 34.615 10.93 0.00 46.28 3.91
463 464 6.599445 AGATTATATCTGGCAAAGAGTTGCT 58.401 36.000 10.93 0.00 46.28 3.91
464 465 6.874288 AGATTATATCTGGCAAAGAGTTGC 57.126 37.500 2.81 2.81 44.99 4.17
477 478 8.744652 GTGTACTGATAGGTGCAGATTATATCT 58.255 37.037 0.00 0.00 41.15 1.98
478 479 8.523658 TGTGTACTGATAGGTGCAGATTATATC 58.476 37.037 0.00 0.00 36.86 1.63
479 480 8.422577 TGTGTACTGATAGGTGCAGATTATAT 57.577 34.615 0.00 0.00 36.86 0.86
480 481 7.724061 TCTGTGTACTGATAGGTGCAGATTATA 59.276 37.037 0.00 0.00 36.86 0.98
481 482 6.551227 TCTGTGTACTGATAGGTGCAGATTAT 59.449 38.462 0.00 0.00 36.86 1.28
482 483 5.891551 TCTGTGTACTGATAGGTGCAGATTA 59.108 40.000 0.00 0.00 36.86 1.75
483 484 4.711846 TCTGTGTACTGATAGGTGCAGATT 59.288 41.667 0.00 0.00 36.86 2.40
484 485 4.281657 TCTGTGTACTGATAGGTGCAGAT 58.718 43.478 0.00 0.00 36.86 2.90
485 486 3.697166 TCTGTGTACTGATAGGTGCAGA 58.303 45.455 0.00 0.00 36.86 4.26
486 487 4.081972 ACTTCTGTGTACTGATAGGTGCAG 60.082 45.833 0.00 0.00 39.26 4.41
487 488 3.832490 ACTTCTGTGTACTGATAGGTGCA 59.168 43.478 0.00 0.00 0.00 4.57
488 489 4.082190 TCACTTCTGTGTACTGATAGGTGC 60.082 45.833 0.00 0.00 44.14 5.01
489 490 5.644977 TCACTTCTGTGTACTGATAGGTG 57.355 43.478 0.00 0.00 44.14 4.00
490 491 4.158764 GCTCACTTCTGTGTACTGATAGGT 59.841 45.833 0.00 0.00 44.14 3.08
491 492 4.440802 GGCTCACTTCTGTGTACTGATAGG 60.441 50.000 0.00 0.00 44.14 2.57
492 493 4.158579 TGGCTCACTTCTGTGTACTGATAG 59.841 45.833 0.00 0.00 44.14 2.08
493 494 4.086457 TGGCTCACTTCTGTGTACTGATA 58.914 43.478 0.00 0.00 44.14 2.15
494 495 2.899900 TGGCTCACTTCTGTGTACTGAT 59.100 45.455 0.00 0.00 44.14 2.90
501 502 1.607509 CCTCACTGGCTCACTTCTGTG 60.608 57.143 0.00 0.00 45.07 3.66
544 545 2.762887 CAGACTCTGTTCCTATGCCTCA 59.237 50.000 0.00 0.00 0.00 3.86
546 547 2.114616 CCAGACTCTGTTCCTATGCCT 58.885 52.381 5.32 0.00 0.00 4.75
547 548 2.111384 TCCAGACTCTGTTCCTATGCC 58.889 52.381 5.32 0.00 0.00 4.40
604 637 3.818773 TCTTCCCCACGTTTCAATTCTTC 59.181 43.478 0.00 0.00 0.00 2.87
605 638 3.827722 TCTTCCCCACGTTTCAATTCTT 58.172 40.909 0.00 0.00 0.00 2.52
606 639 3.502123 TCTTCCCCACGTTTCAATTCT 57.498 42.857 0.00 0.00 0.00 2.40
607 640 4.577834 TTTCTTCCCCACGTTTCAATTC 57.422 40.909 0.00 0.00 0.00 2.17
622 655 2.359214 GAGGATGGGCCGAAATTTCTTC 59.641 50.000 15.92 7.21 43.43 2.87
624 657 1.747206 CGAGGATGGGCCGAAATTTCT 60.747 52.381 15.92 0.00 43.43 2.52
656 689 1.066502 GGCCTCTCTTCAGTTCAGACC 60.067 57.143 0.00 0.00 0.00 3.85
730 765 2.305127 GCAGCTGCGTTGCCTTTTG 61.305 57.895 25.23 0.00 33.76 2.44
865 901 1.906824 TGTTTCGGGAGAGAGGCGT 60.907 57.895 0.00 0.00 41.75 5.68
968 1028 1.064685 GGGGTTGGAATGAGGAACGAT 60.065 52.381 0.00 0.00 0.00 3.73
970 1030 0.037590 TGGGGTTGGAATGAGGAACG 59.962 55.000 0.00 0.00 0.00 3.95
984 1054 2.002018 TTGCTTCGGAGGTTTGGGGT 62.002 55.000 0.00 0.00 0.00 4.95
992 1062 1.068434 GAGAGAGGATTGCTTCGGAGG 59.932 57.143 0.00 0.00 0.00 4.30
997 1067 0.873743 CGCGGAGAGAGGATTGCTTC 60.874 60.000 0.00 0.00 0.00 3.86
1030 1111 2.764128 GCCATCGGGAGTGGAGGA 60.764 66.667 0.00 0.00 39.12 3.71
1270 1351 0.680061 GGTCGGTCTTGAAGTCCTGT 59.320 55.000 6.89 0.00 0.00 4.00
1465 2673 0.829333 CCAGATCAGACACTGGGGAG 59.171 60.000 14.54 0.00 46.76 4.30
1466 2674 2.996985 CCAGATCAGACACTGGGGA 58.003 57.895 14.54 0.00 46.76 4.81
1470 2679 3.324117 CTCAACACCAGATCAGACACTG 58.676 50.000 0.00 0.00 0.00 3.66
1486 2695 5.598769 ACTAACACAACTCTACACCTCAAC 58.401 41.667 0.00 0.00 0.00 3.18
1500 2709 6.148150 CACGGGCTAATAAGAAACTAACACAA 59.852 38.462 0.00 0.00 0.00 3.33
1546 2758 1.533731 CACACCATAACACAACCGTCC 59.466 52.381 0.00 0.00 0.00 4.79
1580 2798 9.010029 TCCATTGATGATGATAACAAGATGATG 57.990 33.333 0.00 0.00 38.03 3.07
1582 2800 8.983702 TTCCATTGATGATGATAACAAGATGA 57.016 30.769 0.00 0.00 38.03 2.92
1654 2908 1.499368 TCAGATCCAGTGGCAGCATA 58.501 50.000 3.51 0.00 0.00 3.14
1656 2971 0.179702 GATCAGATCCAGTGGCAGCA 59.820 55.000 3.51 0.00 0.00 4.41
1675 2990 1.737793 GCGTGGAAAGGAACATAGTGG 59.262 52.381 0.00 0.00 0.00 4.00
1676 2991 2.422597 TGCGTGGAAAGGAACATAGTG 58.577 47.619 0.00 0.00 0.00 2.74
1682 3002 3.493129 GGAAAAATTGCGTGGAAAGGAAC 59.507 43.478 0.00 0.00 0.00 3.62
1683 3003 3.133003 TGGAAAAATTGCGTGGAAAGGAA 59.867 39.130 0.00 0.00 0.00 3.36
1685 3005 2.799978 GTGGAAAAATTGCGTGGAAAGG 59.200 45.455 0.00 0.00 0.00 3.11
1686 3006 3.490526 CAGTGGAAAAATTGCGTGGAAAG 59.509 43.478 0.00 0.00 0.00 2.62
1687 3007 3.118956 ACAGTGGAAAAATTGCGTGGAAA 60.119 39.130 0.00 0.00 0.00 3.13
1688 3008 2.428890 ACAGTGGAAAAATTGCGTGGAA 59.571 40.909 0.00 0.00 0.00 3.53
1689 3009 2.028130 ACAGTGGAAAAATTGCGTGGA 58.972 42.857 0.00 0.00 0.00 4.02
1693 3013 2.679355 TCGACAGTGGAAAAATTGCG 57.321 45.000 0.00 0.00 0.00 4.85
1694 3014 3.244976 CCATCGACAGTGGAAAAATTGC 58.755 45.455 0.00 0.00 39.12 3.56
1695 3015 4.503741 ACCATCGACAGTGGAAAAATTG 57.496 40.909 10.49 0.00 39.12 2.32
1696 3016 5.768164 AGTAACCATCGACAGTGGAAAAATT 59.232 36.000 10.49 0.00 39.12 1.82
1767 3203 3.983344 GCATTCAAAAGCACAACTGTAGG 59.017 43.478 0.00 0.00 0.00 3.18
2019 3520 1.730902 CGACAGTGGCGACTCACAG 60.731 63.158 14.90 0.00 39.93 3.66
2111 3612 5.494632 CATTTGATAATGTGCTGCTCTGA 57.505 39.130 0.00 0.00 37.06 3.27
2295 3807 1.739338 CTCATCGCCTCGCCCTACTT 61.739 60.000 0.00 0.00 0.00 2.24
2366 3900 2.764547 GGAGCCGGAACCCTAGCT 60.765 66.667 5.05 0.00 34.30 3.32
2617 4154 1.336755 GGTGTTTGACGCTGGTTGATT 59.663 47.619 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.