Multiple sequence alignment - TraesCS1D01G233000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G233000 chr1D 100.000 2411 0 0 1 2411 321639672 321642082 0.000000e+00 4453.0
1 TraesCS1D01G233000 chr1D 97.290 701 19 0 1 701 399186627 399187327 0.000000e+00 1190.0
2 TraesCS1D01G233000 chr1D 90.731 917 46 19 704 1591 321705244 321704338 0.000000e+00 1186.0
3 TraesCS1D01G233000 chr1D 95.269 465 14 7 996 1459 369925931 369925474 0.000000e+00 730.0
4 TraesCS1D01G233000 chr1D 85.680 419 25 8 1786 2204 321704265 321703882 2.230000e-110 409.0
5 TraesCS1D01G233000 chr1D 99.390 164 1 0 2248 2411 321650047 321650210 5.040000e-77 298.0
6 TraesCS1D01G233000 chr1D 99.390 164 1 0 2248 2411 321657321 321657484 5.040000e-77 298.0
7 TraesCS1D01G233000 chr1D 99.390 164 1 0 2248 2411 321662390 321662553 5.040000e-77 298.0
8 TraesCS1D01G233000 chr1B 87.383 1601 96 48 704 2247 434408801 434410352 0.000000e+00 1740.0
9 TraesCS1D01G233000 chr1B 93.137 1020 30 17 704 1693 434423484 434422475 0.000000e+00 1459.0
10 TraesCS1D01G233000 chr1B 93.305 702 46 1 1 702 238681399 238682099 0.000000e+00 1035.0
11 TraesCS1D01G233000 chr1B 88.210 458 38 9 1794 2247 434422342 434421897 1.270000e-147 532.0
12 TraesCS1D01G233000 chr1A 88.589 1113 68 24 704 1789 400975639 400974559 0.000000e+00 1297.0
13 TraesCS1D01G233000 chr1A 94.484 562 25 1 710 1271 400960540 400961095 0.000000e+00 861.0
14 TraesCS1D01G233000 chr1A 85.513 780 71 34 703 1459 468599502 468598742 0.000000e+00 776.0
15 TraesCS1D01G233000 chr1A 86.992 369 28 10 1881 2247 400962843 400963193 4.830000e-107 398.0
16 TraesCS1D01G233000 chr1A 90.127 314 8 8 1266 1556 400962216 400962529 1.050000e-103 387.0
17 TraesCS1D01G233000 chr1A 88.966 290 17 6 1958 2247 400974408 400974134 6.380000e-91 344.0
18 TraesCS1D01G233000 chr1A 90.141 71 7 0 1898 1968 400974494 400974424 2.550000e-15 93.5
19 TraesCS1D01G233000 chr2D 98.006 702 13 1 1 702 88389885 88389185 0.000000e+00 1218.0
20 TraesCS1D01G233000 chr2D 95.584 702 31 0 1 702 36050895 36051596 0.000000e+00 1125.0
21 TraesCS1D01G233000 chr3B 94.744 704 37 0 1 704 806263463 806262760 0.000000e+00 1096.0
22 TraesCS1D01G233000 chr7D 96.937 653 18 2 49 700 236499420 236500071 0.000000e+00 1094.0
23 TraesCS1D01G233000 chr7D 98.171 164 3 0 2248 2411 362087740 362087577 1.090000e-73 287.0
24 TraesCS1D01G233000 chr7D 97.561 164 4 0 2248 2411 633784346 633784509 5.070000e-72 281.0
25 TraesCS1D01G233000 chr7D 95.732 164 7 0 2248 2411 362079998 362079835 5.110000e-67 265.0
26 TraesCS1D01G233000 chr7D 94.737 171 7 2 2241 2411 633773702 633773870 5.110000e-67 265.0
27 TraesCS1D01G233000 chr7D 94.444 162 8 1 2244 2405 60785654 60785814 5.150000e-62 248.0
28 TraesCS1D01G233000 chr5B 92.029 690 55 0 14 703 53652924 53652235 0.000000e+00 970.0
29 TraesCS1D01G233000 chr7B 91.595 702 57 2 1 702 41489632 41488933 0.000000e+00 968.0
30 TraesCS1D01G233000 chr6B 91.051 704 61 2 1 703 33077167 33076465 0.000000e+00 950.0
31 TraesCS1D01G233000 chr4D 86.352 784 64 31 710 1466 444176988 444177755 0.000000e+00 815.0
32 TraesCS1D01G233000 chr4A 86.031 766 70 26 736 1475 23611491 23610737 0.000000e+00 787.0
33 TraesCS1D01G233000 chrUn 99.390 164 1 0 2248 2411 315718113 315717950 5.040000e-77 298.0
34 TraesCS1D01G233000 chr3A 86.056 251 19 5 1973 2213 27167847 27168091 3.080000e-64 255.0
35 TraesCS1D01G233000 chr3A 85.657 251 20 5 1973 2213 27128288 27128532 1.430000e-62 250.0
36 TraesCS1D01G233000 chr3A 85.259 251 21 5 1973 2213 27069701 27069945 6.660000e-61 244.0
37 TraesCS1D01G233000 chr3A 85.656 244 20 4 1973 2207 27213461 27213698 2.390000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G233000 chr1D 321639672 321642082 2410 False 4453.000000 4453 100.000000 1 2411 1 chr1D.!!$F1 2410
1 TraesCS1D01G233000 chr1D 399186627 399187327 700 False 1190.000000 1190 97.290000 1 701 1 chr1D.!!$F5 700
2 TraesCS1D01G233000 chr1D 321703882 321705244 1362 True 797.500000 1186 88.205500 704 2204 2 chr1D.!!$R2 1500
3 TraesCS1D01G233000 chr1B 434408801 434410352 1551 False 1740.000000 1740 87.383000 704 2247 1 chr1B.!!$F2 1543
4 TraesCS1D01G233000 chr1B 238681399 238682099 700 False 1035.000000 1035 93.305000 1 702 1 chr1B.!!$F1 701
5 TraesCS1D01G233000 chr1B 434421897 434423484 1587 True 995.500000 1459 90.673500 704 2247 2 chr1B.!!$R1 1543
6 TraesCS1D01G233000 chr1A 468598742 468599502 760 True 776.000000 776 85.513000 703 1459 1 chr1A.!!$R1 756
7 TraesCS1D01G233000 chr1A 400974134 400975639 1505 True 578.166667 1297 89.232000 704 2247 3 chr1A.!!$R2 1543
8 TraesCS1D01G233000 chr1A 400960540 400963193 2653 False 548.666667 861 90.534333 710 2247 3 chr1A.!!$F1 1537
9 TraesCS1D01G233000 chr2D 88389185 88389885 700 True 1218.000000 1218 98.006000 1 702 1 chr2D.!!$R1 701
10 TraesCS1D01G233000 chr2D 36050895 36051596 701 False 1125.000000 1125 95.584000 1 702 1 chr2D.!!$F1 701
11 TraesCS1D01G233000 chr3B 806262760 806263463 703 True 1096.000000 1096 94.744000 1 704 1 chr3B.!!$R1 703
12 TraesCS1D01G233000 chr7D 236499420 236500071 651 False 1094.000000 1094 96.937000 49 700 1 chr7D.!!$F2 651
13 TraesCS1D01G233000 chr5B 53652235 53652924 689 True 970.000000 970 92.029000 14 703 1 chr5B.!!$R1 689
14 TraesCS1D01G233000 chr7B 41488933 41489632 699 True 968.000000 968 91.595000 1 702 1 chr7B.!!$R1 701
15 TraesCS1D01G233000 chr6B 33076465 33077167 702 True 950.000000 950 91.051000 1 703 1 chr6B.!!$R1 702
16 TraesCS1D01G233000 chr4D 444176988 444177755 767 False 815.000000 815 86.352000 710 1466 1 chr4D.!!$F1 756
17 TraesCS1D01G233000 chr4A 23610737 23611491 754 True 787.000000 787 86.031000 736 1475 1 chr4A.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
823 828 1.000145 GATCCAACGCTCGAAACTCC 59.0 55.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2277 3621 0.183492 GTGGCATCATTAGCAGGGGA 59.817 55.0 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 1.195448 GGCGATCCACGAGCAAATATG 59.805 52.381 0.00 0.00 45.77 1.78
117 118 5.350365 TCAAGTACATGCGTTTATTCAGTCC 59.650 40.000 0.00 0.00 0.00 3.85
368 371 1.063616 CACTCTTGAATGCATGGCGAG 59.936 52.381 0.00 5.34 0.00 5.03
471 474 1.790755 TCCGAGACAACAATCCAACG 58.209 50.000 0.00 0.00 0.00 4.10
502 505 8.614469 TGGTGCGATCATACATGAAATAATAA 57.386 30.769 0.00 0.00 40.69 1.40
640 643 4.131088 GACAGCCGGACGGACTCC 62.131 72.222 15.99 0.00 37.50 3.85
668 671 4.319190 CGTCCATGTAAACATTGTGACGTT 60.319 41.667 20.47 0.00 33.61 3.99
689 692 6.013689 CGTTGTAATAAAAGCTTCGGAGTTC 58.986 40.000 0.00 0.00 0.00 3.01
821 826 1.714794 CAGATCCAACGCTCGAAACT 58.285 50.000 0.00 0.00 0.00 2.66
823 828 1.000145 GATCCAACGCTCGAAACTCC 59.000 55.000 0.00 0.00 0.00 3.85
846 857 2.001269 CCCTCCCCTCCCGAAACAT 61.001 63.158 0.00 0.00 0.00 2.71
937 966 3.245052 CCTCCTTGTTCCTCATTCCACTT 60.245 47.826 0.00 0.00 0.00 3.16
941 970 3.140325 TGTTCCTCATTCCACTTCCAC 57.860 47.619 0.00 0.00 0.00 4.02
1460 2653 5.288952 GGTGTAGAGATGCGTTAGTTTCTTC 59.711 44.000 0.00 0.00 0.00 2.87
1633 2880 6.700081 TCGATAGATTTATCCCTCAACGTTTG 59.300 38.462 0.00 0.00 42.67 2.93
1634 2881 6.073765 CGATAGATTTATCCCTCAACGTTTGG 60.074 42.308 0.00 3.89 33.52 3.28
1661 2908 0.887933 ATTTGCTGGTAAAGGTGCCG 59.112 50.000 0.00 0.00 30.63 5.69
1706 2986 0.251916 TATGCCCCAGTTCAGTTCGG 59.748 55.000 0.00 0.00 0.00 4.30
1726 3006 2.677524 TGCCCCTGCTCACATTGC 60.678 61.111 0.00 0.00 38.71 3.56
1739 3019 5.006649 TGCTCACATTGCACTATAATTCGAC 59.993 40.000 0.00 0.00 35.31 4.20
1742 3022 6.573434 TCACATTGCACTATAATTCGACTCT 58.427 36.000 0.00 0.00 0.00 3.24
1774 3054 2.021208 GCCCTTGCTCTCTCAATTCCC 61.021 57.143 0.00 0.00 33.53 3.97
1775 3055 1.409381 CCCTTGCTCTCTCAATTCCCC 60.409 57.143 0.00 0.00 0.00 4.81
1776 3056 1.283029 CCTTGCTCTCTCAATTCCCCA 59.717 52.381 0.00 0.00 0.00 4.96
1784 3064 3.033909 CTCTCAATTCCCCATTTTCCCC 58.966 50.000 0.00 0.00 0.00 4.81
1805 3103 3.057033 CCTTCTTGCATGGAAAGGAACAG 60.057 47.826 11.26 0.00 0.00 3.16
1814 3112 4.453480 TGGAAAGGAACAGAGTGGATTT 57.547 40.909 0.00 0.00 0.00 2.17
1818 3116 5.105997 GGAAAGGAACAGAGTGGATTTGATG 60.106 44.000 0.00 0.00 0.00 3.07
1823 3121 5.123979 GGAACAGAGTGGATTTGATGGTTAC 59.876 44.000 0.00 0.00 0.00 2.50
1843 3141 7.387948 TGGTTACTCTCTTCTTTTGCTACAATC 59.612 37.037 0.00 0.00 0.00 2.67
1844 3142 7.412020 GGTTACTCTCTTCTTTTGCTACAATCG 60.412 40.741 0.00 0.00 0.00 3.34
1895 3196 9.868277 TGAATGTTAAGTTTCAAATGTTCTGTT 57.132 25.926 0.00 0.00 0.00 3.16
1938 3241 4.785914 TCCCATAAACAAGTGTAGGGATCA 59.214 41.667 2.76 0.00 38.84 2.92
1969 3300 1.768275 TGGCGTGTATCCATGGAAGAT 59.232 47.619 20.67 4.84 0.00 2.40
1970 3301 2.969262 TGGCGTGTATCCATGGAAGATA 59.031 45.455 20.67 3.67 0.00 1.98
1971 3302 3.006859 TGGCGTGTATCCATGGAAGATAG 59.993 47.826 20.67 11.68 0.00 2.08
1995 3326 7.624549 AGTATGAAATTCTGGCTGTTCTAAGA 58.375 34.615 0.00 0.00 0.00 2.10
1997 3328 4.697352 TGAAATTCTGGCTGTTCTAAGAGC 59.303 41.667 3.37 3.37 43.91 4.09
2014 3348 3.287222 AGAGCACTAACTGGTTTTGCAA 58.713 40.909 16.54 0.00 34.61 4.08
2040 3377 8.394971 TGTCATGTGATGTTTTCTTTACTGAT 57.605 30.769 0.00 0.00 0.00 2.90
2047 3384 8.999431 GTGATGTTTTCTTTACTGATTCCTGTA 58.001 33.333 0.00 0.00 0.00 2.74
2131 3468 1.792949 CTTTGTGGCTCGACACTGTAC 59.207 52.381 4.33 0.00 41.84 2.90
2215 3559 8.871125 AGGCATTTGTTAGTAGTACTAGCATAT 58.129 33.333 22.72 20.21 40.68 1.78
2254 3598 8.399425 ACTATAGCATCTTATATAGTGTGACGC 58.601 37.037 0.00 0.00 41.46 5.19
2255 3599 4.810790 AGCATCTTATATAGTGTGACGCC 58.189 43.478 0.00 0.00 0.00 5.68
2256 3600 3.927142 GCATCTTATATAGTGTGACGCCC 59.073 47.826 0.00 0.00 0.00 6.13
2257 3601 3.909776 TCTTATATAGTGTGACGCCCG 57.090 47.619 0.00 0.00 0.00 6.13
2258 3602 2.555325 TCTTATATAGTGTGACGCCCGG 59.445 50.000 0.00 0.00 0.00 5.73
2259 3603 2.275134 TATATAGTGTGACGCCCGGA 57.725 50.000 0.73 0.00 0.00 5.14
2260 3604 1.629043 ATATAGTGTGACGCCCGGAT 58.371 50.000 0.73 0.00 0.00 4.18
2261 3605 2.275134 TATAGTGTGACGCCCGGATA 57.725 50.000 0.73 0.00 0.00 2.59
2262 3606 1.405872 ATAGTGTGACGCCCGGATAA 58.594 50.000 0.73 0.00 0.00 1.75
2263 3607 1.405872 TAGTGTGACGCCCGGATAAT 58.594 50.000 0.73 0.00 0.00 1.28
2264 3608 0.539986 AGTGTGACGCCCGGATAATT 59.460 50.000 0.73 0.00 0.00 1.40
2265 3609 1.758280 AGTGTGACGCCCGGATAATTA 59.242 47.619 0.73 0.00 0.00 1.40
2266 3610 2.168936 AGTGTGACGCCCGGATAATTAA 59.831 45.455 0.73 0.00 0.00 1.40
2267 3611 2.542595 GTGTGACGCCCGGATAATTAAG 59.457 50.000 0.73 0.00 0.00 1.85
2268 3612 1.529865 GTGACGCCCGGATAATTAAGC 59.470 52.381 0.73 0.00 0.00 3.09
2269 3613 1.414919 TGACGCCCGGATAATTAAGCT 59.585 47.619 0.73 0.00 0.00 3.74
2270 3614 2.629137 TGACGCCCGGATAATTAAGCTA 59.371 45.455 0.73 0.00 0.00 3.32
2271 3615 2.991866 GACGCCCGGATAATTAAGCTAC 59.008 50.000 0.73 0.00 0.00 3.58
2272 3616 2.366266 ACGCCCGGATAATTAAGCTACA 59.634 45.455 0.73 0.00 0.00 2.74
2273 3617 2.993899 CGCCCGGATAATTAAGCTACAG 59.006 50.000 0.73 0.00 0.00 2.74
2274 3618 3.554337 CGCCCGGATAATTAAGCTACAGT 60.554 47.826 0.73 0.00 0.00 3.55
2275 3619 4.321452 CGCCCGGATAATTAAGCTACAGTA 60.321 45.833 0.73 0.00 0.00 2.74
2276 3620 5.544650 GCCCGGATAATTAAGCTACAGTAA 58.455 41.667 0.73 0.00 0.00 2.24
2277 3621 6.171213 GCCCGGATAATTAAGCTACAGTAAT 58.829 40.000 0.73 0.00 0.00 1.89
2278 3622 6.313164 GCCCGGATAATTAAGCTACAGTAATC 59.687 42.308 0.73 0.00 0.00 1.75
2279 3623 6.817140 CCCGGATAATTAAGCTACAGTAATCC 59.183 42.308 0.73 0.00 0.00 3.01
2280 3624 6.817140 CCGGATAATTAAGCTACAGTAATCCC 59.183 42.308 0.00 0.00 0.00 3.85
2281 3625 6.817140 CGGATAATTAAGCTACAGTAATCCCC 59.183 42.308 0.00 0.00 0.00 4.81
2282 3626 7.310485 CGGATAATTAAGCTACAGTAATCCCCT 60.310 40.741 0.00 0.00 0.00 4.79
2283 3627 7.824779 GGATAATTAAGCTACAGTAATCCCCTG 59.175 40.741 0.00 0.00 36.01 4.45
2284 3628 4.417426 TTAAGCTACAGTAATCCCCTGC 57.583 45.455 0.00 0.00 33.09 4.85
2285 3629 2.182516 AGCTACAGTAATCCCCTGCT 57.817 50.000 0.00 0.00 33.09 4.24
2286 3630 3.330126 AGCTACAGTAATCCCCTGCTA 57.670 47.619 0.00 0.00 33.09 3.49
2287 3631 3.654273 AGCTACAGTAATCCCCTGCTAA 58.346 45.455 0.00 0.00 33.09 3.09
2288 3632 4.235372 AGCTACAGTAATCCCCTGCTAAT 58.765 43.478 0.00 0.00 33.09 1.73
2289 3633 4.040952 AGCTACAGTAATCCCCTGCTAATG 59.959 45.833 0.00 0.00 33.09 1.90
2290 3634 4.040461 GCTACAGTAATCCCCTGCTAATGA 59.960 45.833 0.00 0.00 33.09 2.57
2291 3635 5.280215 GCTACAGTAATCCCCTGCTAATGAT 60.280 44.000 0.00 0.00 33.09 2.45
2292 3636 4.978099 ACAGTAATCCCCTGCTAATGATG 58.022 43.478 0.00 0.00 33.09 3.07
2293 3637 3.755378 CAGTAATCCCCTGCTAATGATGC 59.245 47.826 0.00 0.00 0.00 3.91
2294 3638 2.299326 AATCCCCTGCTAATGATGCC 57.701 50.000 0.00 0.00 0.00 4.40
2295 3639 1.151760 ATCCCCTGCTAATGATGCCA 58.848 50.000 0.00 0.00 0.00 4.92
2296 3640 0.183492 TCCCCTGCTAATGATGCCAC 59.817 55.000 0.00 0.00 0.00 5.01
2297 3641 1.168407 CCCCTGCTAATGATGCCACG 61.168 60.000 0.00 0.00 0.00 4.94
2298 3642 0.464373 CCCTGCTAATGATGCCACGT 60.464 55.000 0.00 0.00 0.00 4.49
2299 3643 0.940126 CCTGCTAATGATGCCACGTC 59.060 55.000 0.00 0.00 0.00 4.34
2300 3644 1.655484 CTGCTAATGATGCCACGTCA 58.345 50.000 0.00 0.00 0.00 4.35
2301 3645 1.328680 CTGCTAATGATGCCACGTCAC 59.671 52.381 0.00 0.00 0.00 3.67
2302 3646 0.657840 GCTAATGATGCCACGTCACC 59.342 55.000 0.00 0.00 0.00 4.02
2303 3647 1.743772 GCTAATGATGCCACGTCACCT 60.744 52.381 0.00 0.00 0.00 4.00
2304 3648 2.205074 CTAATGATGCCACGTCACCTC 58.795 52.381 0.00 0.00 0.00 3.85
2305 3649 0.392998 AATGATGCCACGTCACCTCC 60.393 55.000 0.00 0.00 0.00 4.30
2306 3650 2.509336 GATGCCACGTCACCTCCG 60.509 66.667 0.00 0.00 0.00 4.63
2307 3651 3.296709 GATGCCACGTCACCTCCGT 62.297 63.158 0.00 0.00 39.52 4.69
2308 3652 2.781595 GATGCCACGTCACCTCCGTT 62.782 60.000 0.00 0.00 36.17 4.44
2309 3653 1.537814 ATGCCACGTCACCTCCGTTA 61.538 55.000 0.00 0.00 36.17 3.18
2310 3654 1.735559 GCCACGTCACCTCCGTTAC 60.736 63.158 0.00 0.00 36.17 2.50
2311 3655 1.962144 CCACGTCACCTCCGTTACT 59.038 57.895 0.00 0.00 36.17 2.24
2312 3656 0.388134 CCACGTCACCTCCGTTACTG 60.388 60.000 0.00 0.00 36.17 2.74
2313 3657 0.313043 CACGTCACCTCCGTTACTGT 59.687 55.000 0.00 0.00 36.17 3.55
2314 3658 1.035139 ACGTCACCTCCGTTACTGTT 58.965 50.000 0.00 0.00 34.28 3.16
2315 3659 1.269413 ACGTCACCTCCGTTACTGTTG 60.269 52.381 0.00 0.00 34.28 3.33
2316 3660 1.145803 GTCACCTCCGTTACTGTTGC 58.854 55.000 0.00 0.00 0.00 4.17
2317 3661 1.045407 TCACCTCCGTTACTGTTGCT 58.955 50.000 0.00 0.00 0.00 3.91
2318 3662 1.148310 CACCTCCGTTACTGTTGCTG 58.852 55.000 0.00 0.00 0.00 4.41
2319 3663 1.045407 ACCTCCGTTACTGTTGCTGA 58.955 50.000 0.00 0.00 0.00 4.26
2320 3664 1.623811 ACCTCCGTTACTGTTGCTGAT 59.376 47.619 0.00 0.00 0.00 2.90
2321 3665 2.271800 CCTCCGTTACTGTTGCTGATC 58.728 52.381 0.00 0.00 0.00 2.92
2322 3666 2.093973 CCTCCGTTACTGTTGCTGATCT 60.094 50.000 0.00 0.00 0.00 2.75
2323 3667 3.589988 CTCCGTTACTGTTGCTGATCTT 58.410 45.455 0.00 0.00 0.00 2.40
2324 3668 3.997021 CTCCGTTACTGTTGCTGATCTTT 59.003 43.478 0.00 0.00 0.00 2.52
2325 3669 3.994392 TCCGTTACTGTTGCTGATCTTTC 59.006 43.478 0.00 0.00 0.00 2.62
2326 3670 3.181530 CCGTTACTGTTGCTGATCTTTCG 60.182 47.826 0.00 0.00 0.00 3.46
2327 3671 3.428870 CGTTACTGTTGCTGATCTTTCGT 59.571 43.478 0.00 0.00 0.00 3.85
2328 3672 4.084537 CGTTACTGTTGCTGATCTTTCGTT 60.085 41.667 0.00 0.00 0.00 3.85
2329 3673 5.118050 CGTTACTGTTGCTGATCTTTCGTTA 59.882 40.000 0.00 0.00 0.00 3.18
2330 3674 6.526222 GTTACTGTTGCTGATCTTTCGTTAG 58.474 40.000 0.00 0.00 0.00 2.34
2331 3675 4.632153 ACTGTTGCTGATCTTTCGTTAGT 58.368 39.130 0.00 0.00 0.00 2.24
2332 3676 5.057149 ACTGTTGCTGATCTTTCGTTAGTT 58.943 37.500 0.00 0.00 0.00 2.24
2333 3677 5.177696 ACTGTTGCTGATCTTTCGTTAGTTC 59.822 40.000 0.00 0.00 0.00 3.01
2334 3678 5.053811 TGTTGCTGATCTTTCGTTAGTTCA 58.946 37.500 0.00 0.00 0.00 3.18
2335 3679 5.525745 TGTTGCTGATCTTTCGTTAGTTCAA 59.474 36.000 0.00 0.00 0.00 2.69
2336 3680 6.037720 TGTTGCTGATCTTTCGTTAGTTCAAA 59.962 34.615 0.00 0.00 0.00 2.69
2337 3681 6.612247 TGCTGATCTTTCGTTAGTTCAAAA 57.388 33.333 0.00 0.00 0.00 2.44
2338 3682 6.427150 TGCTGATCTTTCGTTAGTTCAAAAC 58.573 36.000 0.00 0.00 0.00 2.43
2339 3683 5.851703 GCTGATCTTTCGTTAGTTCAAAACC 59.148 40.000 0.00 0.00 0.00 3.27
2340 3684 5.981174 TGATCTTTCGTTAGTTCAAAACCG 58.019 37.500 0.00 0.00 0.00 4.44
2341 3685 4.799419 TCTTTCGTTAGTTCAAAACCGG 57.201 40.909 0.00 0.00 0.00 5.28
2342 3686 4.190772 TCTTTCGTTAGTTCAAAACCGGT 58.809 39.130 0.00 0.00 0.00 5.28
2343 3687 4.270808 TCTTTCGTTAGTTCAAAACCGGTC 59.729 41.667 8.04 0.00 0.00 4.79
2344 3688 2.482864 TCGTTAGTTCAAAACCGGTCC 58.517 47.619 8.04 0.00 0.00 4.46
2345 3689 2.158986 TCGTTAGTTCAAAACCGGTCCA 60.159 45.455 8.04 0.00 0.00 4.02
2346 3690 2.613133 CGTTAGTTCAAAACCGGTCCAA 59.387 45.455 8.04 0.00 0.00 3.53
2347 3691 3.065095 CGTTAGTTCAAAACCGGTCCAAA 59.935 43.478 8.04 0.00 0.00 3.28
2348 3692 4.438472 CGTTAGTTCAAAACCGGTCCAAAA 60.438 41.667 8.04 0.00 0.00 2.44
2349 3693 5.409211 GTTAGTTCAAAACCGGTCCAAAAA 58.591 37.500 8.04 0.00 0.00 1.94
2350 3694 4.746535 AGTTCAAAACCGGTCCAAAAAT 57.253 36.364 8.04 0.00 0.00 1.82
2351 3695 4.689071 AGTTCAAAACCGGTCCAAAAATC 58.311 39.130 8.04 0.00 0.00 2.17
2352 3696 4.160626 AGTTCAAAACCGGTCCAAAAATCA 59.839 37.500 8.04 0.00 0.00 2.57
2353 3697 4.737855 TCAAAACCGGTCCAAAAATCAA 57.262 36.364 8.04 0.00 0.00 2.57
2354 3698 5.086104 TCAAAACCGGTCCAAAAATCAAA 57.914 34.783 8.04 0.00 0.00 2.69
2355 3699 5.675538 TCAAAACCGGTCCAAAAATCAAAT 58.324 33.333 8.04 0.00 0.00 2.32
2356 3700 6.116126 TCAAAACCGGTCCAAAAATCAAATT 58.884 32.000 8.04 0.00 0.00 1.82
2357 3701 6.258947 TCAAAACCGGTCCAAAAATCAAATTC 59.741 34.615 8.04 0.00 0.00 2.17
2358 3702 4.946478 ACCGGTCCAAAAATCAAATTCA 57.054 36.364 0.00 0.00 0.00 2.57
2359 3703 5.283457 ACCGGTCCAAAAATCAAATTCAA 57.717 34.783 0.00 0.00 0.00 2.69
2360 3704 5.675538 ACCGGTCCAAAAATCAAATTCAAA 58.324 33.333 0.00 0.00 0.00 2.69
2361 3705 6.116126 ACCGGTCCAAAAATCAAATTCAAAA 58.884 32.000 0.00 0.00 0.00 2.44
2362 3706 6.770303 ACCGGTCCAAAAATCAAATTCAAAAT 59.230 30.769 0.00 0.00 0.00 1.82
2363 3707 7.934120 ACCGGTCCAAAAATCAAATTCAAAATA 59.066 29.630 0.00 0.00 0.00 1.40
2364 3708 8.945057 CCGGTCCAAAAATCAAATTCAAAATAT 58.055 29.630 0.00 0.00 0.00 1.28
2365 3709 9.757859 CGGTCCAAAAATCAAATTCAAAATATG 57.242 29.630 0.00 0.00 0.00 1.78
2375 3719 8.726650 TCAAATTCAAAATATGACAGACAACG 57.273 30.769 0.00 0.00 37.92 4.10
2376 3720 8.563732 TCAAATTCAAAATATGACAGACAACGA 58.436 29.630 0.00 0.00 37.92 3.85
2377 3721 9.179552 CAAATTCAAAATATGACAGACAACGAA 57.820 29.630 0.00 0.00 37.92 3.85
2378 3722 9.743057 AAATTCAAAATATGACAGACAACGAAA 57.257 25.926 0.00 0.00 37.92 3.46
2379 3723 8.955061 ATTCAAAATATGACAGACAACGAAAG 57.045 30.769 0.00 0.00 37.92 2.62
2380 3724 7.490962 TCAAAATATGACAGACAACGAAAGT 57.509 32.000 0.00 0.00 38.79 2.66
2381 3725 7.925993 TCAAAATATGACAGACAACGAAAGTT 58.074 30.769 0.00 0.00 44.44 2.66
2382 3726 8.402472 TCAAAATATGACAGACAACGAAAGTTT 58.598 29.630 0.00 0.00 42.18 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 118 7.901029 TGATAGCTTCAAGTTCCCTCATATAG 58.099 38.462 0.00 0.00 0.00 1.31
471 474 6.597883 TTCATGTATGATCGCACCATATGCC 61.598 44.000 0.00 0.00 43.32 4.40
502 505 8.370182 ACACAAAAGGAAATTTGATCTATGCTT 58.630 29.630 0.00 0.00 41.73 3.91
640 643 5.049060 TCACAATGTTTACATGGACGAAAGG 60.049 40.000 4.29 0.00 36.56 3.11
668 671 4.092383 GCGAACTCCGAAGCTTTTATTACA 59.908 41.667 0.00 0.00 41.76 2.41
881 902 0.545787 TTTAAGGAGGGGAGACGGCA 60.546 55.000 0.00 0.00 0.00 5.69
937 966 0.252513 TCGGGAGATTTGGGAGTGGA 60.253 55.000 0.00 0.00 0.00 4.02
941 970 0.253044 TTGCTCGGGAGATTTGGGAG 59.747 55.000 0.00 0.00 38.80 4.30
1008 1054 2.483745 CTCGCCGTCTGCTTCGTA 59.516 61.111 0.00 0.00 38.05 3.43
1149 1195 1.847328 TCTGGTACTTGCGGATCTCA 58.153 50.000 0.00 0.00 0.00 3.27
1460 2653 0.892755 TACCACAGACACGGGCTAAG 59.107 55.000 0.00 0.00 0.00 2.18
1661 2908 3.139850 CCTCATGTTCATCAGATCCAGC 58.860 50.000 0.00 0.00 0.00 4.85
1706 2986 3.951769 AATGTGAGCAGGGGCAGGC 62.952 63.158 0.00 0.00 44.61 4.85
1722 3002 6.018425 CAGCAAGAGTCGAATTATAGTGCAAT 60.018 38.462 0.00 0.00 31.95 3.56
1726 3006 6.269315 AGACAGCAAGAGTCGAATTATAGTG 58.731 40.000 0.00 0.00 40.84 2.74
1739 3019 2.681848 CAAGGGCATTAGACAGCAAGAG 59.318 50.000 0.00 0.00 0.00 2.85
1742 3022 1.176527 GCAAGGGCATTAGACAGCAA 58.823 50.000 0.00 0.00 40.72 3.91
1774 3054 2.093341 CCATGCAAGAAGGGGAAAATGG 60.093 50.000 0.00 0.00 0.00 3.16
1775 3055 2.833338 TCCATGCAAGAAGGGGAAAATG 59.167 45.455 0.00 0.00 0.00 2.32
1776 3056 3.188880 TCCATGCAAGAAGGGGAAAAT 57.811 42.857 0.00 0.00 0.00 1.82
1784 3064 3.822735 TCTGTTCCTTTCCATGCAAGAAG 59.177 43.478 0.00 0.00 0.00 2.85
1805 3103 5.983540 AGAGAGTAACCATCAAATCCACTC 58.016 41.667 0.00 0.00 32.90 3.51
1814 3112 5.869579 AGCAAAAGAAGAGAGTAACCATCA 58.130 37.500 0.00 0.00 0.00 3.07
1818 3116 7.412020 CGATTGTAGCAAAAGAAGAGAGTAACC 60.412 40.741 0.00 0.00 0.00 2.85
1823 3121 5.406780 ACACGATTGTAGCAAAAGAAGAGAG 59.593 40.000 0.00 0.00 32.60 3.20
1843 3141 1.850377 TTGGCATTCAAAAGCACACG 58.150 45.000 0.00 0.00 31.46 4.49
1844 3142 3.656559 AGATTGGCATTCAAAAGCACAC 58.343 40.909 11.57 0.00 39.05 3.82
1895 3196 3.531538 GACAACCTCCAGCGATAAATGA 58.468 45.455 0.00 0.00 0.00 2.57
1969 3300 8.758829 TCTTAGAACAGCCAGAATTTCATACTA 58.241 33.333 0.00 0.00 0.00 1.82
1970 3301 7.624549 TCTTAGAACAGCCAGAATTTCATACT 58.375 34.615 0.00 0.00 0.00 2.12
1971 3302 7.466590 GCTCTTAGAACAGCCAGAATTTCATAC 60.467 40.741 0.00 0.00 0.00 2.39
1995 3326 3.384467 ACATTGCAAAACCAGTTAGTGCT 59.616 39.130 1.71 0.26 35.78 4.40
1997 3328 4.930963 TGACATTGCAAAACCAGTTAGTG 58.069 39.130 1.71 0.00 0.00 2.74
2014 3348 8.394971 TCAGTAAAGAAAACATCACATGACAT 57.605 30.769 0.00 0.00 0.00 3.06
2040 3377 4.342665 GTCCAAAACCCACAAATACAGGAA 59.657 41.667 0.00 0.00 0.00 3.36
2047 3384 3.039252 TGGAGTCCAAAACCCACAAAT 57.961 42.857 10.20 0.00 0.00 2.32
2247 3591 2.828877 CTTAATTATCCGGGCGTCACA 58.171 47.619 0.00 0.00 0.00 3.58
2248 3592 1.529865 GCTTAATTATCCGGGCGTCAC 59.470 52.381 0.00 0.00 0.00 3.67
2249 3593 1.414919 AGCTTAATTATCCGGGCGTCA 59.585 47.619 0.00 0.00 0.00 4.35
2250 3594 2.165319 AGCTTAATTATCCGGGCGTC 57.835 50.000 0.00 0.00 0.00 5.19
2251 3595 2.366266 TGTAGCTTAATTATCCGGGCGT 59.634 45.455 0.00 0.00 0.00 5.68
2252 3596 2.993899 CTGTAGCTTAATTATCCGGGCG 59.006 50.000 0.00 0.00 0.00 6.13
2253 3597 4.004196 ACTGTAGCTTAATTATCCGGGC 57.996 45.455 0.00 0.00 0.00 6.13
2254 3598 6.817140 GGATTACTGTAGCTTAATTATCCGGG 59.183 42.308 0.00 0.00 0.00 5.73
2255 3599 6.817140 GGGATTACTGTAGCTTAATTATCCGG 59.183 42.308 0.00 0.00 31.87 5.14
2256 3600 6.817140 GGGGATTACTGTAGCTTAATTATCCG 59.183 42.308 0.00 0.00 31.87 4.18
2257 3601 7.824779 CAGGGGATTACTGTAGCTTAATTATCC 59.175 40.741 0.00 0.00 0.00 2.59
2258 3602 7.334671 GCAGGGGATTACTGTAGCTTAATTATC 59.665 40.741 0.00 0.00 38.22 1.75
2259 3603 7.017651 AGCAGGGGATTACTGTAGCTTAATTAT 59.982 37.037 0.00 0.00 38.22 1.28
2260 3604 6.329197 AGCAGGGGATTACTGTAGCTTAATTA 59.671 38.462 0.00 0.00 38.22 1.40
2261 3605 5.132816 AGCAGGGGATTACTGTAGCTTAATT 59.867 40.000 0.00 0.00 38.22 1.40
2262 3606 4.660771 AGCAGGGGATTACTGTAGCTTAAT 59.339 41.667 0.00 0.00 38.22 1.40
2263 3607 4.037927 AGCAGGGGATTACTGTAGCTTAA 58.962 43.478 0.00 0.00 38.22 1.85
2264 3608 3.654273 AGCAGGGGATTACTGTAGCTTA 58.346 45.455 0.00 0.00 38.22 3.09
2265 3609 2.482494 AGCAGGGGATTACTGTAGCTT 58.518 47.619 0.00 0.00 38.22 3.74
2266 3610 2.182516 AGCAGGGGATTACTGTAGCT 57.817 50.000 0.00 0.00 38.22 3.32
2267 3611 4.040461 TCATTAGCAGGGGATTACTGTAGC 59.960 45.833 0.00 0.00 38.22 3.58
2268 3612 5.808366 TCATTAGCAGGGGATTACTGTAG 57.192 43.478 0.00 0.00 38.22 2.74
2269 3613 5.513094 GCATCATTAGCAGGGGATTACTGTA 60.513 44.000 0.00 0.00 38.22 2.74
2270 3614 4.747931 GCATCATTAGCAGGGGATTACTGT 60.748 45.833 0.00 0.00 38.22 3.55
2271 3615 3.755378 GCATCATTAGCAGGGGATTACTG 59.245 47.826 0.00 0.00 38.95 2.74
2272 3616 3.245052 GGCATCATTAGCAGGGGATTACT 60.245 47.826 0.00 0.00 0.00 2.24
2273 3617 3.084786 GGCATCATTAGCAGGGGATTAC 58.915 50.000 0.00 0.00 0.00 1.89
2274 3618 2.715880 TGGCATCATTAGCAGGGGATTA 59.284 45.455 0.00 0.00 0.00 1.75
2275 3619 1.500303 TGGCATCATTAGCAGGGGATT 59.500 47.619 0.00 0.00 0.00 3.01
2276 3620 1.151760 TGGCATCATTAGCAGGGGAT 58.848 50.000 0.00 0.00 0.00 3.85
2277 3621 0.183492 GTGGCATCATTAGCAGGGGA 59.817 55.000 0.00 0.00 0.00 4.81
2278 3622 1.168407 CGTGGCATCATTAGCAGGGG 61.168 60.000 0.00 0.00 0.00 4.79
2279 3623 0.464373 ACGTGGCATCATTAGCAGGG 60.464 55.000 0.00 0.00 0.00 4.45
2280 3624 0.940126 GACGTGGCATCATTAGCAGG 59.060 55.000 0.00 0.00 0.00 4.85
2281 3625 1.328680 GTGACGTGGCATCATTAGCAG 59.671 52.381 0.00 0.00 0.00 4.24
2282 3626 1.368641 GTGACGTGGCATCATTAGCA 58.631 50.000 0.00 0.00 0.00 3.49
2283 3627 0.657840 GGTGACGTGGCATCATTAGC 59.342 55.000 0.00 0.00 0.00 3.09
2284 3628 2.205074 GAGGTGACGTGGCATCATTAG 58.795 52.381 0.00 0.00 0.00 1.73
2285 3629 1.134521 GGAGGTGACGTGGCATCATTA 60.135 52.381 0.00 0.00 0.00 1.90
2286 3630 0.392998 GGAGGTGACGTGGCATCATT 60.393 55.000 0.00 0.00 0.00 2.57
2287 3631 1.221840 GGAGGTGACGTGGCATCAT 59.778 57.895 0.00 0.00 0.00 2.45
2288 3632 2.662596 GGAGGTGACGTGGCATCA 59.337 61.111 0.00 0.00 0.00 3.07
2289 3633 2.509336 CGGAGGTGACGTGGCATC 60.509 66.667 0.00 0.00 0.00 3.91
2290 3634 1.537814 TAACGGAGGTGACGTGGCAT 61.538 55.000 0.00 0.00 44.83 4.40
2291 3635 2.201708 TAACGGAGGTGACGTGGCA 61.202 57.895 0.00 0.00 44.83 4.92
2292 3636 1.735559 GTAACGGAGGTGACGTGGC 60.736 63.158 0.00 0.00 44.83 5.01
2293 3637 0.388134 CAGTAACGGAGGTGACGTGG 60.388 60.000 0.00 0.00 44.83 4.94
2294 3638 0.313043 ACAGTAACGGAGGTGACGTG 59.687 55.000 0.00 0.00 44.83 4.49
2296 3640 1.415374 CAACAGTAACGGAGGTGACG 58.585 55.000 0.00 0.00 32.28 4.35
2297 3641 1.145803 GCAACAGTAACGGAGGTGAC 58.854 55.000 0.00 0.00 0.00 3.67
2298 3642 1.045407 AGCAACAGTAACGGAGGTGA 58.955 50.000 0.00 0.00 0.00 4.02
2299 3643 1.148310 CAGCAACAGTAACGGAGGTG 58.852 55.000 0.00 0.00 0.00 4.00
2300 3644 1.045407 TCAGCAACAGTAACGGAGGT 58.955 50.000 0.00 0.00 0.00 3.85
2301 3645 2.093973 AGATCAGCAACAGTAACGGAGG 60.094 50.000 0.00 0.00 0.00 4.30
2302 3646 3.238108 AGATCAGCAACAGTAACGGAG 57.762 47.619 0.00 0.00 0.00 4.63
2303 3647 3.678056 AAGATCAGCAACAGTAACGGA 57.322 42.857 0.00 0.00 0.00 4.69
2304 3648 3.181530 CGAAAGATCAGCAACAGTAACGG 60.182 47.826 0.00 0.00 0.00 4.44
2305 3649 3.428870 ACGAAAGATCAGCAACAGTAACG 59.571 43.478 0.00 0.00 0.00 3.18
2306 3650 4.992381 ACGAAAGATCAGCAACAGTAAC 57.008 40.909 0.00 0.00 0.00 2.50
2307 3651 6.220930 ACTAACGAAAGATCAGCAACAGTAA 58.779 36.000 0.00 0.00 0.00 2.24
2308 3652 5.779922 ACTAACGAAAGATCAGCAACAGTA 58.220 37.500 0.00 0.00 0.00 2.74
2309 3653 4.632153 ACTAACGAAAGATCAGCAACAGT 58.368 39.130 0.00 0.00 0.00 3.55
2310 3654 5.177511 TGAACTAACGAAAGATCAGCAACAG 59.822 40.000 0.00 0.00 0.00 3.16
2311 3655 5.053811 TGAACTAACGAAAGATCAGCAACA 58.946 37.500 0.00 0.00 0.00 3.33
2312 3656 5.591643 TGAACTAACGAAAGATCAGCAAC 57.408 39.130 0.00 0.00 0.00 4.17
2313 3657 6.612247 TTTGAACTAACGAAAGATCAGCAA 57.388 33.333 0.00 0.00 30.99 3.91
2314 3658 6.427150 GTTTTGAACTAACGAAAGATCAGCA 58.573 36.000 0.00 0.00 30.99 4.41
2315 3659 5.851703 GGTTTTGAACTAACGAAAGATCAGC 59.148 40.000 0.00 0.00 30.99 4.26
2316 3660 6.071463 CGGTTTTGAACTAACGAAAGATCAG 58.929 40.000 0.00 0.00 30.99 2.90
2317 3661 5.049954 CCGGTTTTGAACTAACGAAAGATCA 60.050 40.000 0.00 0.00 0.00 2.92
2318 3662 5.049886 ACCGGTTTTGAACTAACGAAAGATC 60.050 40.000 0.00 0.00 0.00 2.75
2319 3663 4.818005 ACCGGTTTTGAACTAACGAAAGAT 59.182 37.500 0.00 0.00 0.00 2.40
2320 3664 4.190772 ACCGGTTTTGAACTAACGAAAGA 58.809 39.130 0.00 0.00 0.00 2.52
2321 3665 4.521010 GACCGGTTTTGAACTAACGAAAG 58.479 43.478 9.42 0.00 0.00 2.62
2322 3666 3.312146 GGACCGGTTTTGAACTAACGAAA 59.688 43.478 9.42 0.00 0.00 3.46
2323 3667 2.871633 GGACCGGTTTTGAACTAACGAA 59.128 45.455 9.42 0.00 0.00 3.85
2324 3668 2.158986 TGGACCGGTTTTGAACTAACGA 60.159 45.455 9.42 0.00 0.00 3.85
2325 3669 2.211806 TGGACCGGTTTTGAACTAACG 58.788 47.619 9.42 0.00 0.00 3.18
2326 3670 4.635833 TTTGGACCGGTTTTGAACTAAC 57.364 40.909 9.42 0.00 0.00 2.34
2327 3671 5.656213 TTTTTGGACCGGTTTTGAACTAA 57.344 34.783 9.42 0.00 0.00 2.24
2328 3672 5.360144 TGATTTTTGGACCGGTTTTGAACTA 59.640 36.000 9.42 0.00 0.00 2.24
2329 3673 4.160626 TGATTTTTGGACCGGTTTTGAACT 59.839 37.500 9.42 0.00 0.00 3.01
2330 3674 4.434520 TGATTTTTGGACCGGTTTTGAAC 58.565 39.130 9.42 0.00 0.00 3.18
2331 3675 4.737855 TGATTTTTGGACCGGTTTTGAA 57.262 36.364 9.42 0.80 0.00 2.69
2332 3676 4.737855 TTGATTTTTGGACCGGTTTTGA 57.262 36.364 9.42 0.00 0.00 2.69
2333 3677 6.037610 TGAATTTGATTTTTGGACCGGTTTTG 59.962 34.615 9.42 0.00 0.00 2.44
2334 3678 6.116126 TGAATTTGATTTTTGGACCGGTTTT 58.884 32.000 9.42 0.00 0.00 2.43
2335 3679 5.675538 TGAATTTGATTTTTGGACCGGTTT 58.324 33.333 9.42 0.00 0.00 3.27
2336 3680 5.283457 TGAATTTGATTTTTGGACCGGTT 57.717 34.783 9.42 0.00 0.00 4.44
2337 3681 4.946478 TGAATTTGATTTTTGGACCGGT 57.054 36.364 6.92 6.92 0.00 5.28
2338 3682 6.610741 TTTTGAATTTGATTTTTGGACCGG 57.389 33.333 0.00 0.00 0.00 5.28
2339 3683 9.757859 CATATTTTGAATTTGATTTTTGGACCG 57.242 29.630 0.00 0.00 0.00 4.79
2349 3693 9.345517 CGTTGTCTGTCATATTTTGAATTTGAT 57.654 29.630 0.00 0.00 35.70 2.57
2350 3694 8.563732 TCGTTGTCTGTCATATTTTGAATTTGA 58.436 29.630 0.00 0.00 35.70 2.69
2351 3695 8.726650 TCGTTGTCTGTCATATTTTGAATTTG 57.273 30.769 0.00 0.00 35.70 2.32
2352 3696 9.743057 TTTCGTTGTCTGTCATATTTTGAATTT 57.257 25.926 0.00 0.00 35.70 1.82
2353 3697 9.398170 CTTTCGTTGTCTGTCATATTTTGAATT 57.602 29.630 0.00 0.00 35.70 2.17
2354 3698 8.567948 ACTTTCGTTGTCTGTCATATTTTGAAT 58.432 29.630 0.00 0.00 35.70 2.57
2355 3699 7.925993 ACTTTCGTTGTCTGTCATATTTTGAA 58.074 30.769 0.00 0.00 35.70 2.69
2356 3700 7.490962 ACTTTCGTTGTCTGTCATATTTTGA 57.509 32.000 0.00 0.00 0.00 2.69
2357 3701 8.560576 AAACTTTCGTTGTCTGTCATATTTTG 57.439 30.769 0.00 0.00 32.65 2.44
2358 3702 9.233232 GAAAACTTTCGTTGTCTGTCATATTTT 57.767 29.630 0.00 0.00 35.02 1.82
2359 3703 8.402472 TGAAAACTTTCGTTGTCTGTCATATTT 58.598 29.630 0.00 0.00 38.07 1.40
2360 3704 7.925993 TGAAAACTTTCGTTGTCTGTCATATT 58.074 30.769 0.00 0.00 38.07 1.28
2361 3705 7.490962 TGAAAACTTTCGTTGTCTGTCATAT 57.509 32.000 0.00 0.00 38.07 1.78
2362 3706 6.912203 TGAAAACTTTCGTTGTCTGTCATA 57.088 33.333 0.00 0.00 38.07 2.15
2363 3707 5.811399 TGAAAACTTTCGTTGTCTGTCAT 57.189 34.783 0.00 0.00 38.07 3.06
2364 3708 5.614923 TTGAAAACTTTCGTTGTCTGTCA 57.385 34.783 0.00 0.00 38.07 3.58
2365 3709 6.921332 TTTTGAAAACTTTCGTTGTCTGTC 57.079 33.333 0.00 0.00 38.07 3.51
2366 3710 9.581099 AATATTTTGAAAACTTTCGTTGTCTGT 57.419 25.926 0.00 0.00 38.07 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.