Multiple sequence alignment - TraesCS1D01G232700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G232700 chr1D 100.000 5749 0 0 1 5749 321270127 321275875 0.000000e+00 10617.0
1 TraesCS1D01G232700 chr1A 92.634 2335 107 16 3441 5749 401639936 401637641 0.000000e+00 3299.0
2 TraesCS1D01G232700 chr1A 91.248 1474 68 32 1946 3381 401641467 401640017 0.000000e+00 1951.0
3 TraesCS1D01G232700 chr1A 88.014 876 46 25 559 1393 401649485 401648628 0.000000e+00 981.0
4 TraesCS1D01G232700 chr1A 90.930 441 32 5 1 440 401650006 401649573 2.310000e-163 586.0
5 TraesCS1D01G232700 chr1A 83.088 272 43 3 5479 5749 95862213 95861944 1.600000e-60 244.0
6 TraesCS1D01G232700 chr1A 100.000 34 0 0 1411 1444 401641951 401641918 4.810000e-06 63.9
7 TraesCS1D01G232700 chr1A 79.167 96 17 3 568 660 410434921 410434826 4.810000e-06 63.9
8 TraesCS1D01G232700 chr1B 89.548 2191 129 46 1929 4067 434186508 434188650 0.000000e+00 2686.0
9 TraesCS1D01G232700 chr1B 96.294 1484 50 3 4271 5749 434189056 434190539 0.000000e+00 2431.0
10 TraesCS1D01G232700 chr1B 88.347 1107 77 27 612 1690 434185220 434186302 0.000000e+00 1282.0
11 TraesCS1D01G232700 chr1B 91.111 180 12 3 4072 4249 434188732 434188909 2.070000e-59 241.0
12 TraesCS1D01G232700 chr1B 79.008 262 44 9 271 528 308341295 308341041 9.910000e-38 169.0
13 TraesCS1D01G232700 chr1B 83.036 112 19 0 5482 5593 420364639 420364528 1.020000e-17 102.0
14 TraesCS1D01G232700 chr2A 81.752 274 47 3 5477 5749 749850225 749850496 5.800000e-55 226.0
15 TraesCS1D01G232700 chr5A 81.111 270 48 3 5481 5749 702872040 702871773 4.510000e-51 213.0
16 TraesCS1D01G232700 chr6B 90.698 86 7 1 2838 2923 211682777 211682693 4.710000e-21 113.0
17 TraesCS1D01G232700 chr6B 100.000 33 0 0 3014 3046 211682668 211682636 1.730000e-05 62.1
18 TraesCS1D01G232700 chr6B 97.143 35 1 0 3480 3514 211641630 211641596 6.220000e-05 60.2
19 TraesCS1D01G232700 chr6D 97.143 35 1 0 3480 3514 119461093 119461059 6.220000e-05 60.2
20 TraesCS1D01G232700 chr5D 100.000 28 0 0 5378 5405 451540971 451540998 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G232700 chr1D 321270127 321275875 5748 False 10617.0 10617 100.000000 1 5749 1 chr1D.!!$F1 5748
1 TraesCS1D01G232700 chr1A 401637641 401641951 4310 True 1771.3 3299 94.627333 1411 5749 3 chr1A.!!$R3 4338
2 TraesCS1D01G232700 chr1A 401648628 401650006 1378 True 783.5 981 89.472000 1 1393 2 chr1A.!!$R4 1392
3 TraesCS1D01G232700 chr1B 434185220 434190539 5319 False 1660.0 2686 91.325000 612 5749 4 chr1B.!!$F1 5137

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
490 529 0.038021 TATTGGCAGTTGGAGCAGCA 59.962 50.0 0.00 0.00 0.00 4.41 F
1168 1249 0.038892 CTACCAGGTACGTGCGTGTT 60.039 55.0 21.83 12.76 0.00 3.32 F
1169 1250 0.039256 TACCAGGTACGTGCGTGTTC 60.039 55.0 21.83 0.00 0.00 3.18 F
1399 1481 0.394216 TTATTGGCTCCGTGCTGCAT 60.394 50.0 5.27 0.00 42.39 3.96 F
2658 2872 0.417841 AACAGGAGGAAGAGGGCCTA 59.582 55.0 5.73 0.00 35.44 3.93 F
3382 3602 0.107508 CATGGTCGGCTGGTGAGAAT 60.108 55.0 0.00 0.00 0.00 2.40 F
3815 4057 0.389948 CGGTACTGGTCAGGTGCTTC 60.390 60.0 2.87 0.00 0.00 3.86 F
4413 4860 0.038251 CTGCACTCAGGTGAGCGTTA 60.038 55.0 6.91 0.00 45.79 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2187 2344 0.321298 ACGCCTAGAAACCAACGCAT 60.321 50.000 0.00 0.00 0.00 4.73 R
2786 3000 0.179026 CTGGATCCCTGCAGTGATGG 60.179 60.000 16.91 8.43 36.19 3.51 R
2787 3001 0.835276 TCTGGATCCCTGCAGTGATG 59.165 55.000 16.91 2.62 41.30 3.07 R
2968 3182 1.273048 GCAACACCCATCAGAATGCAA 59.727 47.619 0.00 0.00 34.76 4.08 R
4221 4543 0.099436 GGTGATGAAGCGGCAATGTC 59.901 55.000 1.45 0.00 0.00 3.06 R
4374 4821 0.172578 CGAGTGTGCTCCCGATGTAA 59.827 55.000 0.00 0.00 38.49 2.41 R
4722 5172 0.319813 TGAGCATGTGACCTCGTGTG 60.320 55.000 0.00 0.00 0.00 3.82 R
5250 5702 3.362870 AAGGATTTGAGGGAAGAGCTG 57.637 47.619 0.00 0.00 0.00 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.082665 GATGATGAGCATCCAGGAAGAA 57.917 45.455 0.00 0.00 46.23 2.52
34 35 4.665451 TGAGCATCCAGGAAGAAATTGAA 58.335 39.130 0.00 0.00 0.00 2.69
35 36 5.078949 TGAGCATCCAGGAAGAAATTGAAA 58.921 37.500 0.00 0.00 0.00 2.69
36 37 5.184479 TGAGCATCCAGGAAGAAATTGAAAG 59.816 40.000 0.00 0.00 0.00 2.62
37 38 5.082425 AGCATCCAGGAAGAAATTGAAAGT 58.918 37.500 0.00 0.00 0.00 2.66
54 55 7.575414 TTGAAAGTAAGTGGAGCATGTTTTA 57.425 32.000 0.00 0.00 0.00 1.52
63 64 5.068987 AGTGGAGCATGTTTTAAGCTTCAAA 59.931 36.000 0.00 0.92 44.86 2.69
65 66 4.925646 GGAGCATGTTTTAAGCTTCAAAGG 59.074 41.667 0.00 0.00 39.02 3.11
93 95 0.768221 AGGCAGGAGAGTTGTTCCCA 60.768 55.000 0.00 0.00 35.20 4.37
105 107 4.111577 AGTTGTTCCCAAGGATAGGATCA 58.888 43.478 0.00 0.00 31.50 2.92
147 149 2.519013 AGGATTGCTTCAAACCTGGTC 58.481 47.619 0.00 0.00 43.36 4.02
152 154 2.489971 TGCTTCAAACCTGGTCTAACG 58.510 47.619 0.00 0.00 0.00 3.18
167 169 4.160252 GGTCTAACGTACCATGAAGGGTTA 59.840 45.833 0.96 0.00 43.89 2.85
182 184 1.728425 GGGTTATTTCGACGTCGCTTT 59.272 47.619 32.19 19.93 39.60 3.51
183 185 2.222663 GGGTTATTTCGACGTCGCTTTC 60.223 50.000 32.19 18.22 39.60 2.62
184 186 2.665052 GGTTATTTCGACGTCGCTTTCT 59.335 45.455 32.19 16.43 39.60 2.52
185 187 3.481467 GGTTATTTCGACGTCGCTTTCTG 60.481 47.826 32.19 5.51 39.60 3.02
186 188 2.060326 ATTTCGACGTCGCTTTCTGA 57.940 45.000 32.19 11.25 39.60 3.27
187 189 1.126079 TTTCGACGTCGCTTTCTGAC 58.874 50.000 32.19 0.00 39.60 3.51
235 237 5.628130 AGTGAATGATGTGGAGGAATATGG 58.372 41.667 0.00 0.00 0.00 2.74
237 239 5.829924 GTGAATGATGTGGAGGAATATGGTT 59.170 40.000 0.00 0.00 0.00 3.67
248 250 8.624776 GTGGAGGAATATGGTTCTTATTTCAAG 58.375 37.037 0.00 0.00 0.00 3.02
283 285 2.370393 GCGGACAACGGTCGTTCTC 61.370 63.158 5.73 4.50 45.28 2.87
289 291 2.422832 GACAACGGTCGTTCTCTCCTAT 59.577 50.000 5.73 0.00 36.00 2.57
290 292 3.614092 ACAACGGTCGTTCTCTCCTATA 58.386 45.455 5.73 0.00 36.00 1.31
306 308 7.284716 TCTCTCCTATAAAGAAATGCACGACTA 59.715 37.037 0.00 0.00 0.00 2.59
318 320 2.099263 TGCACGACTACTATGAGAAGGC 59.901 50.000 0.00 0.00 0.00 4.35
364 366 3.799420 GGCGTTGATGAGATTGTCTAGAC 59.201 47.826 16.32 16.32 0.00 2.59
365 367 3.483922 GCGTTGATGAGATTGTCTAGACG 59.516 47.826 17.85 3.11 0.00 4.18
405 407 1.826720 AGGCCACGATGAAATTTGCAT 59.173 42.857 5.01 0.00 0.00 3.96
406 408 1.928503 GGCCACGATGAAATTTGCATG 59.071 47.619 0.00 0.00 0.00 4.06
409 411 1.006805 CACGATGAAATTTGCATGCGC 60.007 47.619 14.09 0.00 39.24 6.09
413 415 1.360820 TGAAATTTGCATGCGCCATG 58.639 45.000 14.09 10.21 43.91 3.66
437 439 4.710324 TGAAGGTGTTTGAACCGAAGTAT 58.290 39.130 0.00 0.00 45.53 2.12
440 442 4.315803 AGGTGTTTGAACCGAAGTATCTG 58.684 43.478 0.00 0.00 45.53 2.90
442 444 4.389077 GGTGTTTGAACCGAAGTATCTGAG 59.611 45.833 0.00 0.00 0.00 3.35
443 445 5.227908 GTGTTTGAACCGAAGTATCTGAGA 58.772 41.667 0.00 0.00 0.00 3.27
444 446 5.346281 GTGTTTGAACCGAAGTATCTGAGAG 59.654 44.000 0.00 0.00 0.00 3.20
453 492 5.098893 CGAAGTATCTGAGAGAACCAACTG 58.901 45.833 0.00 0.00 0.00 3.16
460 499 1.887198 GAGAGAACCAACTGTCGAGGA 59.113 52.381 0.00 0.00 0.00 3.71
461 500 1.614413 AGAGAACCAACTGTCGAGGAC 59.386 52.381 0.00 0.00 0.00 3.85
479 518 2.161609 GGACACGGAAAGTTATTGGCAG 59.838 50.000 0.00 0.00 0.00 4.85
486 525 3.367395 GGAAAGTTATTGGCAGTTGGAGC 60.367 47.826 0.00 0.00 0.00 4.70
490 529 0.038021 TATTGGCAGTTGGAGCAGCA 59.962 50.000 0.00 0.00 0.00 4.41
491 530 0.828762 ATTGGCAGTTGGAGCAGCAA 60.829 50.000 0.00 0.00 0.00 3.91
492 531 1.457823 TTGGCAGTTGGAGCAGCAAG 61.458 55.000 0.00 0.00 0.00 4.01
493 532 1.601759 GGCAGTTGGAGCAGCAAGA 60.602 57.895 0.00 0.00 0.00 3.02
494 533 0.964358 GGCAGTTGGAGCAGCAAGAT 60.964 55.000 0.00 0.00 0.00 2.40
495 534 0.170561 GCAGTTGGAGCAGCAAGATG 59.829 55.000 0.00 0.00 0.00 2.90
496 535 1.531423 CAGTTGGAGCAGCAAGATGT 58.469 50.000 0.00 0.00 0.00 3.06
497 536 1.884579 CAGTTGGAGCAGCAAGATGTT 59.115 47.619 0.00 0.00 0.00 2.71
498 537 2.295349 CAGTTGGAGCAGCAAGATGTTT 59.705 45.455 0.00 0.00 0.00 2.83
499 538 2.555757 AGTTGGAGCAGCAAGATGTTTC 59.444 45.455 0.00 0.00 0.00 2.78
500 539 1.538047 TGGAGCAGCAAGATGTTTCC 58.462 50.000 0.00 4.72 0.00 3.13
501 540 1.074405 TGGAGCAGCAAGATGTTTCCT 59.926 47.619 0.00 0.00 31.38 3.36
502 541 2.305635 TGGAGCAGCAAGATGTTTCCTA 59.694 45.455 0.00 0.00 31.38 2.94
503 542 2.941720 GGAGCAGCAAGATGTTTCCTAG 59.058 50.000 0.00 0.00 0.00 3.02
504 543 2.941720 GAGCAGCAAGATGTTTCCTAGG 59.058 50.000 0.82 0.82 0.00 3.02
505 544 2.307098 AGCAGCAAGATGTTTCCTAGGT 59.693 45.455 9.08 0.00 0.00 3.08
506 545 3.519510 AGCAGCAAGATGTTTCCTAGGTA 59.480 43.478 9.08 0.00 0.00 3.08
507 546 4.164988 AGCAGCAAGATGTTTCCTAGGTAT 59.835 41.667 9.08 0.00 0.00 2.73
508 547 4.274459 GCAGCAAGATGTTTCCTAGGTATG 59.726 45.833 9.08 0.00 0.00 2.39
509 548 5.431765 CAGCAAGATGTTTCCTAGGTATGT 58.568 41.667 9.08 0.00 0.00 2.29
510 549 5.882557 CAGCAAGATGTTTCCTAGGTATGTT 59.117 40.000 9.08 2.18 0.00 2.71
511 550 6.037610 CAGCAAGATGTTTCCTAGGTATGTTC 59.962 42.308 9.08 2.41 0.00 3.18
512 551 5.006746 GCAAGATGTTTCCTAGGTATGTTCG 59.993 44.000 9.08 2.38 0.00 3.95
513 552 5.277857 AGATGTTTCCTAGGTATGTTCGG 57.722 43.478 9.08 0.00 0.00 4.30
514 553 4.715297 AGATGTTTCCTAGGTATGTTCGGT 59.285 41.667 9.08 0.00 0.00 4.69
515 554 4.895668 TGTTTCCTAGGTATGTTCGGTT 57.104 40.909 9.08 0.00 0.00 4.44
516 555 4.824289 TGTTTCCTAGGTATGTTCGGTTC 58.176 43.478 9.08 0.00 0.00 3.62
517 556 4.283978 TGTTTCCTAGGTATGTTCGGTTCA 59.716 41.667 9.08 0.00 0.00 3.18
518 557 4.730949 TTCCTAGGTATGTTCGGTTCAG 57.269 45.455 9.08 0.00 0.00 3.02
519 558 3.705051 TCCTAGGTATGTTCGGTTCAGT 58.295 45.455 9.08 0.00 0.00 3.41
520 559 4.091549 TCCTAGGTATGTTCGGTTCAGTT 58.908 43.478 9.08 0.00 0.00 3.16
521 560 4.081862 TCCTAGGTATGTTCGGTTCAGTTG 60.082 45.833 9.08 0.00 0.00 3.16
522 561 4.081862 CCTAGGTATGTTCGGTTCAGTTGA 60.082 45.833 0.00 0.00 0.00 3.18
523 562 4.553330 AGGTATGTTCGGTTCAGTTGAT 57.447 40.909 0.00 0.00 0.00 2.57
524 563 4.906618 AGGTATGTTCGGTTCAGTTGATT 58.093 39.130 0.00 0.00 0.00 2.57
525 564 4.695455 AGGTATGTTCGGTTCAGTTGATTG 59.305 41.667 0.00 0.00 0.00 2.67
526 565 3.559238 ATGTTCGGTTCAGTTGATTGC 57.441 42.857 0.00 0.00 0.00 3.56
527 566 2.293170 TGTTCGGTTCAGTTGATTGCA 58.707 42.857 0.00 0.00 0.00 4.08
528 567 2.685388 TGTTCGGTTCAGTTGATTGCAA 59.315 40.909 0.00 0.00 0.00 4.08
529 568 3.129462 TGTTCGGTTCAGTTGATTGCAAA 59.871 39.130 1.71 0.00 35.42 3.68
530 569 4.202101 TGTTCGGTTCAGTTGATTGCAAAT 60.202 37.500 1.71 0.00 35.42 2.32
531 570 5.009110 TGTTCGGTTCAGTTGATTGCAAATA 59.991 36.000 1.71 0.00 35.42 1.40
532 571 5.041951 TCGGTTCAGTTGATTGCAAATAC 57.958 39.130 1.71 1.82 35.42 1.89
533 572 4.759693 TCGGTTCAGTTGATTGCAAATACT 59.240 37.500 1.71 4.38 35.42 2.12
534 573 5.935206 TCGGTTCAGTTGATTGCAAATACTA 59.065 36.000 1.71 0.00 35.42 1.82
535 574 6.428465 TCGGTTCAGTTGATTGCAAATACTAA 59.572 34.615 1.71 0.00 35.42 2.24
536 575 7.041030 TCGGTTCAGTTGATTGCAAATACTAAA 60.041 33.333 1.71 0.00 35.42 1.85
537 576 7.593273 CGGTTCAGTTGATTGCAAATACTAAAA 59.407 33.333 1.71 3.16 35.42 1.52
538 577 9.423061 GGTTCAGTTGATTGCAAATACTAAAAT 57.577 29.630 1.71 0.00 35.42 1.82
540 579 8.464770 TCAGTTGATTGCAAATACTAAAATGC 57.535 30.769 1.71 0.00 35.42 3.56
541 580 8.087136 TCAGTTGATTGCAAATACTAAAATGCA 58.913 29.630 1.71 0.00 46.21 3.96
548 587 7.418840 TGCAAATACTAAAATGCAAAACAGG 57.581 32.000 0.00 0.00 45.04 4.00
549 588 6.989169 TGCAAATACTAAAATGCAAAACAGGT 59.011 30.769 0.00 0.00 45.04 4.00
550 589 8.144478 TGCAAATACTAAAATGCAAAACAGGTA 58.856 29.630 0.00 0.00 45.04 3.08
551 590 8.983724 GCAAATACTAAAATGCAAAACAGGTAA 58.016 29.630 0.00 0.00 38.63 2.85
554 593 8.736751 ATACTAAAATGCAAAACAGGTAAACG 57.263 30.769 0.00 0.00 0.00 3.60
555 594 5.980715 ACTAAAATGCAAAACAGGTAAACGG 59.019 36.000 0.00 0.00 0.00 4.44
556 595 4.394439 AAATGCAAAACAGGTAAACGGT 57.606 36.364 0.00 0.00 0.00 4.83
557 596 5.517322 AAATGCAAAACAGGTAAACGGTA 57.483 34.783 0.00 0.00 0.00 4.02
563 602 6.255887 TGCAAAACAGGTAAACGGTAAAAATG 59.744 34.615 0.00 0.00 0.00 2.32
587 626 7.036829 TGCACTTCATGGTGAATTTAATGATG 58.963 34.615 6.31 0.00 39.34 3.07
604 644 4.909696 TGATGCCAATTTGTATTACGGG 57.090 40.909 0.00 0.00 0.00 5.28
606 646 4.097135 TGATGCCAATTTGTATTACGGGTG 59.903 41.667 0.00 0.00 0.00 4.61
607 647 3.422796 TGCCAATTTGTATTACGGGTGT 58.577 40.909 0.00 0.00 0.00 4.16
609 649 4.281182 TGCCAATTTGTATTACGGGTGTTT 59.719 37.500 0.00 0.00 0.00 2.83
610 650 4.623595 GCCAATTTGTATTACGGGTGTTTG 59.376 41.667 0.00 0.00 0.00 2.93
613 653 7.540299 CCAATTTGTATTACGGGTGTTTGTAT 58.460 34.615 0.00 0.00 0.00 2.29
940 994 1.405105 GACATGCGGCCAACAACATAT 59.595 47.619 2.24 0.00 0.00 1.78
941 995 2.616376 GACATGCGGCCAACAACATATA 59.384 45.455 2.24 0.00 0.00 0.86
942 996 3.221771 ACATGCGGCCAACAACATATAT 58.778 40.909 2.24 0.00 0.00 0.86
943 997 4.393834 ACATGCGGCCAACAACATATATA 58.606 39.130 2.24 0.00 0.00 0.86
944 998 4.455533 ACATGCGGCCAACAACATATATAG 59.544 41.667 2.24 0.00 0.00 1.31
969 1027 1.140312 AGAGGTTGCCCAGAAGAACA 58.860 50.000 0.00 0.00 0.00 3.18
982 1040 0.597637 AAGAACACGAGGCGTCACTG 60.598 55.000 7.26 3.57 38.32 3.66
1134 1207 2.125633 GGGGACTTCGTCTTCGGC 60.126 66.667 0.00 0.00 37.69 5.54
1168 1249 0.038892 CTACCAGGTACGTGCGTGTT 60.039 55.000 21.83 12.76 0.00 3.32
1169 1250 0.039256 TACCAGGTACGTGCGTGTTC 60.039 55.000 21.83 0.00 0.00 3.18
1249 1330 3.950087 CAGGCTTTGCTTTGTTTTTCC 57.050 42.857 0.00 0.00 0.00 3.13
1276 1358 3.749665 TTTGATGGGTTTCTTGCTTGG 57.250 42.857 0.00 0.00 0.00 3.61
1370 1452 7.611467 ACTTTTACTCATGCAGGTGATGATAAA 59.389 33.333 7.51 3.25 0.00 1.40
1395 1477 1.210478 ACATCTTATTGGCTCCGTGCT 59.790 47.619 0.00 0.00 42.39 4.40
1396 1478 1.600957 CATCTTATTGGCTCCGTGCTG 59.399 52.381 0.00 0.00 42.39 4.41
1397 1479 0.744414 TCTTATTGGCTCCGTGCTGC 60.744 55.000 0.00 0.00 42.39 5.25
1399 1481 0.394216 TTATTGGCTCCGTGCTGCAT 60.394 50.000 5.27 0.00 42.39 3.96
1400 1482 1.096967 TATTGGCTCCGTGCTGCATG 61.097 55.000 14.82 14.82 42.39 4.06
1401 1483 2.825075 ATTGGCTCCGTGCTGCATGA 62.825 55.000 22.79 13.19 42.39 3.07
1402 1484 2.515523 GGCTCCGTGCTGCATGAT 60.516 61.111 22.79 0.00 42.39 2.45
1403 1485 2.541120 GGCTCCGTGCTGCATGATC 61.541 63.158 22.79 9.91 42.39 2.92
1404 1486 1.816679 GCTCCGTGCTGCATGATCA 60.817 57.895 22.79 0.00 38.95 2.92
1405 1487 1.164662 GCTCCGTGCTGCATGATCAT 61.165 55.000 22.79 1.18 38.95 2.45
1406 1488 1.875157 GCTCCGTGCTGCATGATCATA 60.875 52.381 22.79 0.00 38.95 2.15
1407 1489 2.696506 CTCCGTGCTGCATGATCATAT 58.303 47.619 22.79 0.00 0.00 1.78
1408 1490 3.853475 CTCCGTGCTGCATGATCATATA 58.147 45.455 22.79 0.00 0.00 0.86
1409 1491 4.439968 CTCCGTGCTGCATGATCATATAT 58.560 43.478 22.79 0.00 0.00 0.86
1482 1564 4.409901 TGAGTTCCTTCCATGATCATGCTA 59.590 41.667 27.24 15.85 37.49 3.49
1545 1666 6.492156 AAACAGAGCACCTTCTATGTTGGTG 61.492 44.000 6.98 6.98 44.73 4.17
1573 1694 9.546428 AAAAACAATGCTATGAGCTTAGTTTTT 57.454 25.926 21.38 21.38 44.03 1.94
1621 1744 3.326578 TGCCAGGCACCACCGTAT 61.327 61.111 11.22 0.00 46.52 3.06
1631 1754 2.612972 GCACCACCGTATATCTGGGATG 60.613 54.545 0.00 0.00 0.00 3.51
1677 1800 5.711976 AGAACTAGTTGCCTGCACATTTTAT 59.288 36.000 14.14 0.00 0.00 1.40
1679 1802 6.683974 ACTAGTTGCCTGCACATTTTATAG 57.316 37.500 0.00 0.00 0.00 1.31
1681 1804 7.056635 ACTAGTTGCCTGCACATTTTATAGAT 58.943 34.615 0.00 0.00 0.00 1.98
1686 1809 5.242171 TGCCTGCACATTTTATAGATCATGG 59.758 40.000 0.00 0.00 0.00 3.66
1690 1813 6.088016 GCACATTTTATAGATCATGGGCAA 57.912 37.500 10.03 0.00 44.16 4.52
1691 1814 6.694447 GCACATTTTATAGATCATGGGCAAT 58.306 36.000 10.03 0.00 44.16 3.56
1700 1823 9.866655 TTATAGATCATGGGCAATTTTAAGACT 57.133 29.630 0.00 0.00 0.00 3.24
1701 1824 8.773033 ATAGATCATGGGCAATTTTAAGACTT 57.227 30.769 0.00 0.00 0.00 3.01
1702 1825 9.866655 ATAGATCATGGGCAATTTTAAGACTTA 57.133 29.630 0.00 0.00 0.00 2.24
1703 1826 8.773033 AGATCATGGGCAATTTTAAGACTTAT 57.227 30.769 0.00 0.00 0.00 1.73
1704 1827 8.636213 AGATCATGGGCAATTTTAAGACTTATG 58.364 33.333 0.00 0.00 0.00 1.90
1705 1828 7.953005 TCATGGGCAATTTTAAGACTTATGA 57.047 32.000 0.00 0.00 0.00 2.15
1706 1829 8.537728 TCATGGGCAATTTTAAGACTTATGAT 57.462 30.769 0.00 0.00 0.00 2.45
1707 1830 8.415553 TCATGGGCAATTTTAAGACTTATGATG 58.584 33.333 0.00 0.00 0.00 3.07
1708 1831 7.716799 TGGGCAATTTTAAGACTTATGATGT 57.283 32.000 0.00 0.00 0.00 3.06
1709 1832 7.546358 TGGGCAATTTTAAGACTTATGATGTG 58.454 34.615 0.00 0.00 0.00 3.21
1710 1833 6.476706 GGGCAATTTTAAGACTTATGATGTGC 59.523 38.462 0.00 3.43 0.00 4.57
1711 1834 7.035004 GGCAATTTTAAGACTTATGATGTGCA 58.965 34.615 14.88 0.00 0.00 4.57
1712 1835 7.545265 GGCAATTTTAAGACTTATGATGTGCAA 59.455 33.333 14.88 0.00 0.00 4.08
1713 1836 8.924691 GCAATTTTAAGACTTATGATGTGCAAA 58.075 29.630 0.00 0.00 0.00 3.68
1717 1840 9.844790 TTTTAAGACTTATGATGTGCAAATCAG 57.155 29.630 23.50 13.30 39.84 2.90
1718 1841 5.496133 AGACTTATGATGTGCAAATCAGC 57.504 39.130 23.50 10.89 39.84 4.26
1719 1842 4.034858 AGACTTATGATGTGCAAATCAGCG 59.965 41.667 23.50 15.92 39.84 5.18
1720 1843 3.065786 ACTTATGATGTGCAAATCAGCGG 59.934 43.478 23.50 16.78 39.84 5.52
1721 1844 1.753930 ATGATGTGCAAATCAGCGGA 58.246 45.000 23.50 0.98 39.84 5.54
1722 1845 1.753930 TGATGTGCAAATCAGCGGAT 58.246 45.000 15.88 0.00 37.31 4.18
1723 1846 2.093890 TGATGTGCAAATCAGCGGATT 58.906 42.857 15.88 6.23 45.57 3.01
1724 1847 2.097954 TGATGTGCAAATCAGCGGATTC 59.902 45.455 15.88 2.19 42.87 2.52
1739 1862 6.030228 CAGCGGATTCAGAAATAACTTTTCC 58.970 40.000 0.00 0.00 0.00 3.13
1741 1864 5.569413 CGGATTCAGAAATAACTTTTCCGG 58.431 41.667 8.97 0.00 32.94 5.14
1751 1874 1.420430 ACTTTTCCGGTGACTGAGGA 58.580 50.000 0.00 0.00 0.00 3.71
1752 1875 1.766496 ACTTTTCCGGTGACTGAGGAA 59.234 47.619 0.00 0.00 41.76 3.36
1753 1876 2.372172 ACTTTTCCGGTGACTGAGGAAT 59.628 45.455 0.00 0.00 42.81 3.01
1759 1882 2.621055 CCGGTGACTGAGGAATAGAGAG 59.379 54.545 0.00 0.00 0.00 3.20
1765 1888 6.127196 GGTGACTGAGGAATAGAGAGTTCAAT 60.127 42.308 0.00 0.00 0.00 2.57
1766 1889 7.068839 GGTGACTGAGGAATAGAGAGTTCAATA 59.931 40.741 0.00 0.00 0.00 1.90
1769 1892 8.546083 ACTGAGGAATAGAGAGTTCAATATGT 57.454 34.615 0.00 0.00 0.00 2.29
1770 1893 9.647918 ACTGAGGAATAGAGAGTTCAATATGTA 57.352 33.333 0.00 0.00 0.00 2.29
1789 1912 8.970691 ATATGTATTTTTGTGAACAAGTCTGC 57.029 30.769 0.00 0.00 37.15 4.26
1790 1913 6.449635 TGTATTTTTGTGAACAAGTCTGCT 57.550 33.333 0.00 0.00 37.15 4.24
1791 1914 6.494842 TGTATTTTTGTGAACAAGTCTGCTC 58.505 36.000 0.00 0.00 37.15 4.26
1792 1915 5.841957 ATTTTTGTGAACAAGTCTGCTCT 57.158 34.783 0.00 0.00 37.15 4.09
1793 1916 4.621068 TTTTGTGAACAAGTCTGCTCTG 57.379 40.909 0.00 0.00 37.15 3.35
1794 1917 2.988010 TGTGAACAAGTCTGCTCTGT 57.012 45.000 0.00 0.00 0.00 3.41
1795 1918 3.266510 TGTGAACAAGTCTGCTCTGTT 57.733 42.857 0.00 0.00 0.00 3.16
1796 1919 3.609853 TGTGAACAAGTCTGCTCTGTTT 58.390 40.909 0.00 0.00 0.00 2.83
1797 1920 4.009675 TGTGAACAAGTCTGCTCTGTTTT 58.990 39.130 0.00 0.00 0.00 2.43
1798 1921 5.182487 TGTGAACAAGTCTGCTCTGTTTTA 58.818 37.500 0.00 0.00 0.00 1.52
1799 1922 5.064707 TGTGAACAAGTCTGCTCTGTTTTAC 59.935 40.000 0.00 0.00 0.00 2.01
1800 1923 5.064707 GTGAACAAGTCTGCTCTGTTTTACA 59.935 40.000 0.00 0.00 0.00 2.41
1801 1924 5.645929 TGAACAAGTCTGCTCTGTTTTACAA 59.354 36.000 0.00 0.00 0.00 2.41
1802 1925 5.485662 ACAAGTCTGCTCTGTTTTACAAC 57.514 39.130 0.00 0.00 0.00 3.32
1803 1926 5.186198 ACAAGTCTGCTCTGTTTTACAACT 58.814 37.500 0.00 0.00 33.58 3.16
1804 1927 5.648092 ACAAGTCTGCTCTGTTTTACAACTT 59.352 36.000 0.00 0.00 33.58 2.66
1805 1928 6.821665 ACAAGTCTGCTCTGTTTTACAACTTA 59.178 34.615 0.00 0.00 33.58 2.24
1806 1929 6.846325 AGTCTGCTCTGTTTTACAACTTAC 57.154 37.500 0.00 0.00 33.58 2.34
1807 1930 6.346096 AGTCTGCTCTGTTTTACAACTTACA 58.654 36.000 0.00 0.00 33.58 2.41
1808 1931 6.480320 AGTCTGCTCTGTTTTACAACTTACAG 59.520 38.462 0.00 0.00 39.41 2.74
1809 1932 5.236478 TCTGCTCTGTTTTACAACTTACAGC 59.764 40.000 0.00 0.00 38.26 4.40
1810 1933 4.878971 TGCTCTGTTTTACAACTTACAGCA 59.121 37.500 0.00 0.00 38.26 4.41
1811 1934 5.007626 TGCTCTGTTTTACAACTTACAGCAG 59.992 40.000 0.00 0.00 38.26 4.24
1812 1935 5.007724 GCTCTGTTTTACAACTTACAGCAGT 59.992 40.000 0.00 0.00 38.26 4.40
1813 1936 6.358118 TCTGTTTTACAACTTACAGCAGTG 57.642 37.500 0.00 0.00 38.26 3.66
1814 1937 5.878116 TCTGTTTTACAACTTACAGCAGTGT 59.122 36.000 0.00 0.00 38.26 3.55
1815 1938 6.373216 TCTGTTTTACAACTTACAGCAGTGTT 59.627 34.615 0.00 0.00 38.26 3.32
1816 1939 7.549842 TCTGTTTTACAACTTACAGCAGTGTTA 59.450 33.333 0.00 0.00 38.26 2.41
1817 1940 8.215926 TGTTTTACAACTTACAGCAGTGTTAT 57.784 30.769 0.00 0.00 34.46 1.89
1818 1941 8.679100 TGTTTTACAACTTACAGCAGTGTTATT 58.321 29.630 0.00 0.00 34.46 1.40
1819 1942 9.511144 GTTTTACAACTTACAGCAGTGTTATTT 57.489 29.630 0.00 0.00 38.19 1.40
1831 1954 7.824289 ACAGCAGTGTTATTTATCTCTTGCTTA 59.176 33.333 0.00 0.00 30.30 3.09
1857 1980 4.141981 TGAAACATGTGTTGAACAAGGCAT 60.142 37.500 0.00 0.00 43.61 4.40
1884 2007 3.080319 GGCAGAGAACAGAGCAATTTCT 58.920 45.455 0.00 0.00 32.14 2.52
1932 2089 3.118956 CCCAGAACTTGCTCTATCTCGTT 60.119 47.826 0.00 0.00 0.00 3.85
1944 2101 3.948473 TCTATCTCGTTCCACCTCTCAAG 59.052 47.826 0.00 0.00 0.00 3.02
2101 2258 5.468072 CAGATACAAGGTCTGCATATGTTCC 59.532 44.000 4.29 2.53 36.95 3.62
2105 2262 1.414181 AGGTCTGCATATGTTCCTCCG 59.586 52.381 4.29 0.00 0.00 4.63
2150 2307 4.737054 CTTAGCTTGCATACAAAAGTGGG 58.263 43.478 0.00 0.00 34.74 4.61
2151 2308 1.895131 AGCTTGCATACAAAAGTGGGG 59.105 47.619 0.00 0.00 34.74 4.96
2237 2394 1.001641 GGTTGGAGCTCATGTGGCT 60.002 57.895 17.19 13.81 43.26 4.75
2270 2428 6.098124 TCAACCTTTCTTGTTGACAAATGGAT 59.902 34.615 1.94 0.00 45.19 3.41
2272 2430 6.515832 ACCTTTCTTGTTGACAAATGGATTC 58.484 36.000 0.00 0.00 35.15 2.52
2274 2432 7.505585 ACCTTTCTTGTTGACAAATGGATTCTA 59.494 33.333 0.00 0.00 35.15 2.10
2275 2433 7.809806 CCTTTCTTGTTGACAAATGGATTCTAC 59.190 37.037 0.00 0.00 35.15 2.59
2276 2434 6.480524 TCTTGTTGACAAATGGATTCTACG 57.519 37.500 0.00 0.00 35.15 3.51
2277 2435 4.678509 TGTTGACAAATGGATTCTACGC 57.321 40.909 0.00 0.00 0.00 4.42
2313 2475 1.816835 CAGAACATGTGCAGGCTCATT 59.183 47.619 6.60 0.00 0.00 2.57
2320 2482 0.449388 GTGCAGGCTCATTTCGGAAG 59.551 55.000 0.00 0.00 0.00 3.46
2344 2506 7.495055 AGAATTGAAAAATGTGCAGAAGAAGT 58.505 30.769 0.00 0.00 0.00 3.01
2346 2508 6.890663 TTGAAAAATGTGCAGAAGAAGTTG 57.109 33.333 0.00 0.00 0.00 3.16
2347 2509 5.964758 TGAAAAATGTGCAGAAGAAGTTGT 58.035 33.333 0.00 0.00 0.00 3.32
2348 2510 7.094508 TGAAAAATGTGCAGAAGAAGTTGTA 57.905 32.000 0.00 0.00 0.00 2.41
2350 2512 7.487829 TGAAAAATGTGCAGAAGAAGTTGTAAC 59.512 33.333 0.00 0.00 0.00 2.50
2376 2540 2.355756 CCATTTGTGCGTGGAATCCTAG 59.644 50.000 0.00 0.00 37.72 3.02
2542 2749 3.198635 TCCAGGCTCATTCCAAGTAAGAG 59.801 47.826 0.00 0.00 0.00 2.85
2623 2837 7.557719 TCCCCTGACTGATGATTTTATTTTCTC 59.442 37.037 0.00 0.00 0.00 2.87
2624 2838 7.201857 CCCCTGACTGATGATTTTATTTTCTCC 60.202 40.741 0.00 0.00 0.00 3.71
2625 2839 7.201857 CCCTGACTGATGATTTTATTTTCTCCC 60.202 40.741 0.00 0.00 0.00 4.30
2626 2840 7.559170 CCTGACTGATGATTTTATTTTCTCCCT 59.441 37.037 0.00 0.00 0.00 4.20
2627 2841 8.884124 TGACTGATGATTTTATTTTCTCCCTT 57.116 30.769 0.00 0.00 0.00 3.95
2628 2842 8.960591 TGACTGATGATTTTATTTTCTCCCTTC 58.039 33.333 0.00 0.00 0.00 3.46
2629 2843 8.298729 ACTGATGATTTTATTTTCTCCCTTCC 57.701 34.615 0.00 0.00 0.00 3.46
2657 2871 0.476611 AAACAGGAGGAAGAGGGCCT 60.477 55.000 5.25 5.25 38.81 5.19
2658 2872 0.417841 AACAGGAGGAAGAGGGCCTA 59.582 55.000 5.73 0.00 35.44 3.93
2660 2874 1.347062 CAGGAGGAAGAGGGCCTATC 58.653 60.000 5.73 8.31 35.44 2.08
2666 2880 1.002544 GGAAGAGGGCCTATCAATCCG 59.997 57.143 5.73 0.00 0.00 4.18
2771 2985 4.170468 TCCCTTTTTCAGGCTCATATCC 57.830 45.455 0.00 0.00 42.29 2.59
2779 2993 3.877559 TCAGGCTCATATCCTTGTGTTG 58.122 45.455 0.00 0.00 0.00 3.33
2780 2994 3.264193 TCAGGCTCATATCCTTGTGTTGT 59.736 43.478 0.00 0.00 0.00 3.32
2781 2995 3.376234 CAGGCTCATATCCTTGTGTTGTG 59.624 47.826 0.00 0.00 0.00 3.33
2782 2996 3.009473 AGGCTCATATCCTTGTGTTGTGT 59.991 43.478 0.00 0.00 0.00 3.72
2783 2997 3.758554 GGCTCATATCCTTGTGTTGTGTT 59.241 43.478 0.00 0.00 0.00 3.32
2786 3000 5.163754 GCTCATATCCTTGTGTTGTGTTACC 60.164 44.000 0.00 0.00 0.00 2.85
2787 3001 5.250200 TCATATCCTTGTGTTGTGTTACCC 58.750 41.667 0.00 0.00 0.00 3.69
2788 3002 3.586470 ATCCTTGTGTTGTGTTACCCA 57.414 42.857 0.00 0.00 0.00 4.51
2790 3004 3.482436 TCCTTGTGTTGTGTTACCCATC 58.518 45.455 0.00 0.00 0.00 3.51
2791 3005 3.117851 TCCTTGTGTTGTGTTACCCATCA 60.118 43.478 0.00 0.00 0.00 3.07
2966 3180 2.028043 GCAAGTGCAAGGGTGTGC 59.972 61.111 0.00 0.00 45.15 4.57
2986 3200 2.093869 GCATTGCATTCTGATGGGTGTT 60.094 45.455 3.15 0.00 33.72 3.32
2987 3201 3.517602 CATTGCATTCTGATGGGTGTTG 58.482 45.455 0.00 0.00 33.72 3.33
2988 3202 0.889994 TGCATTCTGATGGGTGTTGC 59.110 50.000 0.00 0.00 33.72 4.17
2989 3203 0.889994 GCATTCTGATGGGTGTTGCA 59.110 50.000 0.00 0.00 33.72 4.08
3165 3385 1.361668 CCTTCGGGATGAACTGCACG 61.362 60.000 0.00 0.00 37.25 5.34
3166 3386 1.361668 CTTCGGGATGAACTGCACGG 61.362 60.000 0.00 0.00 31.87 4.94
3261 3481 2.125673 CGGGACAAGTACCAGGCG 60.126 66.667 1.81 0.00 31.13 5.52
3381 3601 1.191489 TCATGGTCGGCTGGTGAGAA 61.191 55.000 0.00 0.00 0.00 2.87
3382 3602 0.107508 CATGGTCGGCTGGTGAGAAT 60.108 55.000 0.00 0.00 0.00 2.40
3383 3603 0.620556 ATGGTCGGCTGGTGAGAATT 59.379 50.000 0.00 0.00 0.00 2.17
3384 3604 1.271856 TGGTCGGCTGGTGAGAATTA 58.728 50.000 0.00 0.00 0.00 1.40
3385 3605 1.626321 TGGTCGGCTGGTGAGAATTAA 59.374 47.619 0.00 0.00 0.00 1.40
3386 3606 2.280628 GGTCGGCTGGTGAGAATTAAG 58.719 52.381 0.00 0.00 0.00 1.85
3387 3607 2.093658 GGTCGGCTGGTGAGAATTAAGA 60.094 50.000 0.00 0.00 0.00 2.10
3388 3608 3.432326 GGTCGGCTGGTGAGAATTAAGAT 60.432 47.826 0.00 0.00 0.00 2.40
3389 3609 3.804873 GTCGGCTGGTGAGAATTAAGATC 59.195 47.826 0.00 0.00 0.00 2.75
3390 3610 3.706594 TCGGCTGGTGAGAATTAAGATCT 59.293 43.478 0.00 0.00 0.00 2.75
3391 3611 4.162320 TCGGCTGGTGAGAATTAAGATCTT 59.838 41.667 13.56 13.56 0.00 2.40
3392 3612 4.509600 CGGCTGGTGAGAATTAAGATCTTC 59.490 45.833 12.24 0.00 0.00 2.87
3393 3613 5.679601 GGCTGGTGAGAATTAAGATCTTCT 58.320 41.667 12.24 2.32 34.48 2.85
3394 3614 5.757808 GGCTGGTGAGAATTAAGATCTTCTC 59.242 44.000 12.24 12.82 44.92 2.87
3395 3615 5.757808 GCTGGTGAGAATTAAGATCTTCTCC 59.242 44.000 12.24 7.55 44.36 3.71
3396 3616 6.631314 GCTGGTGAGAATTAAGATCTTCTCCA 60.631 42.308 12.24 11.65 44.36 3.86
3397 3617 7.443302 TGGTGAGAATTAAGATCTTCTCCAT 57.557 36.000 12.24 0.00 44.36 3.41
3399 3619 6.709846 GGTGAGAATTAAGATCTTCTCCATGG 59.290 42.308 12.24 4.97 44.36 3.66
3400 3620 7.419518 GGTGAGAATTAAGATCTTCTCCATGGA 60.420 40.741 15.27 15.27 44.36 3.41
3401 3621 7.440856 GTGAGAATTAAGATCTTCTCCATGGAC 59.559 40.741 11.44 0.00 44.36 4.02
3402 3622 7.126268 TGAGAATTAAGATCTTCTCCATGGACA 59.874 37.037 11.44 0.00 44.36 4.02
3403 3623 8.043429 AGAATTAAGATCTTCTCCATGGACAT 57.957 34.615 11.44 0.05 0.00 3.06
3404 3624 7.937942 AGAATTAAGATCTTCTCCATGGACATG 59.062 37.037 11.44 3.17 38.51 3.21
3405 3625 6.566079 TTAAGATCTTCTCCATGGACATGT 57.434 37.500 11.44 0.00 37.11 3.21
3406 3626 4.686191 AGATCTTCTCCATGGACATGTC 57.314 45.455 17.91 17.91 37.11 3.06
3422 3642 6.388278 GGACATGTCCCGTTTATCTACTATC 58.612 44.000 31.37 2.50 43.94 2.08
3423 3643 6.208994 GGACATGTCCCGTTTATCTACTATCT 59.791 42.308 31.37 0.00 43.94 1.98
3424 3644 7.392673 GGACATGTCCCGTTTATCTACTATCTA 59.607 40.741 31.37 0.00 43.94 1.98
3425 3645 8.880991 ACATGTCCCGTTTATCTACTATCTAT 57.119 34.615 0.00 0.00 0.00 1.98
3427 3647 8.957466 CATGTCCCGTTTATCTACTATCTATGA 58.043 37.037 0.00 0.00 0.00 2.15
3428 3648 9.702253 ATGTCCCGTTTATCTACTATCTATGAT 57.298 33.333 0.00 0.00 0.00 2.45
3429 3649 9.175312 TGTCCCGTTTATCTACTATCTATGATC 57.825 37.037 0.00 0.00 0.00 2.92
3554 3796 1.018226 CCAAAGAGCAGTCGGAGCTG 61.018 60.000 0.00 0.52 43.58 4.24
3691 3933 9.574516 TGCTACATTCAGAAGTATGTCTAGATA 57.425 33.333 0.00 0.00 37.08 1.98
3811 4053 1.067212 GATAGCGGTACTGGTCAGGTG 59.933 57.143 10.24 0.00 0.00 4.00
3815 4057 0.389948 CGGTACTGGTCAGGTGCTTC 60.390 60.000 2.87 0.00 0.00 3.86
3832 4074 6.038714 AGGTGCTTCTGTTACTCTTTTCTTTG 59.961 38.462 0.00 0.00 0.00 2.77
3837 4079 9.521503 GCTTCTGTTACTCTTTTCTTTGATTTT 57.478 29.630 0.00 0.00 0.00 1.82
3881 4123 3.571590 TGGGTAAAGCCAGTCAAATTGT 58.428 40.909 0.00 0.00 39.65 2.71
4012 4254 6.389869 TCCCTATCTATGTCCAAGAAAATGGT 59.610 38.462 0.00 0.00 41.46 3.55
4110 4431 0.692476 TGGGCACTGCAGTCTTATGT 59.308 50.000 18.64 0.00 0.00 2.29
4116 4437 3.120408 GCACTGCAGTCTTATGTGTTCTG 60.120 47.826 18.64 1.74 0.00 3.02
4154 4475 8.716674 AGTGCCTAAAATAATCCAATGATGAT 57.283 30.769 0.00 0.00 0.00 2.45
4170 4491 7.093684 CCAATGATGATATTCCACATTGCCATA 60.094 37.037 0.00 0.00 43.28 2.74
4179 4500 5.389859 TCCACATTGCCATAGTTTGAAAG 57.610 39.130 0.00 0.00 0.00 2.62
4184 4506 7.226325 CCACATTGCCATAGTTTGAAAGAAAAA 59.774 33.333 0.00 0.00 0.00 1.94
4185 4507 8.776470 CACATTGCCATAGTTTGAAAGAAAAAT 58.224 29.630 0.00 0.00 0.00 1.82
4221 4543 3.885484 ATTCTGCAAAACTGAGACACG 57.115 42.857 0.00 0.00 0.00 4.49
4224 4546 1.933181 CTGCAAAACTGAGACACGACA 59.067 47.619 0.00 0.00 0.00 4.35
4322 4769 3.057969 TCATATTTCAGGCTATGGGCG 57.942 47.619 0.00 0.00 42.94 6.13
4374 4821 4.481072 ACAGAGTGGAGTACTTAAGTGGT 58.519 43.478 18.56 4.81 40.53 4.16
4383 4830 5.334724 AGTACTTAAGTGGTTACATCGGG 57.665 43.478 18.56 0.00 0.00 5.14
4409 4856 3.117171 CGCTGCACTCAGGTGAGC 61.117 66.667 6.91 5.67 45.79 4.26
4413 4860 0.038251 CTGCACTCAGGTGAGCGTTA 60.038 55.000 6.91 0.00 45.79 3.18
4421 4868 4.106029 TCAGGTGAGCGTTATTCTGTAC 57.894 45.455 0.00 0.00 0.00 2.90
4505 4955 5.105269 GGTTCACAAGGGGAACACTTAAAAA 60.105 40.000 12.85 0.00 44.96 1.94
4507 4957 4.403113 TCACAAGGGGAACACTTAAAAACC 59.597 41.667 0.00 0.00 0.00 3.27
4514 4964 6.842280 AGGGGAACACTTAAAAACCTTATTGT 59.158 34.615 0.00 0.00 0.00 2.71
4567 5017 1.634960 TGGTCATTCCTGGACGTGTA 58.365 50.000 0.00 0.00 36.12 2.90
4722 5172 6.472686 ACATAGAGAACATGGTTAGTCCTC 57.527 41.667 0.00 0.00 37.07 3.71
5044 5496 8.717821 CGAGAAAACCATTTGAGTTATTGTCTA 58.282 33.333 0.00 0.00 0.00 2.59
5143 5595 3.778619 AAAAAGTGCCAAAGTGCCC 57.221 47.368 0.00 0.00 0.00 5.36
5150 5602 2.736531 CCAAAGTGCCCTTGTGCC 59.263 61.111 0.00 0.00 0.00 5.01
5250 5702 6.201234 GGCTATTCTTCAAATTAGACGTCTCC 59.799 42.308 23.89 7.20 0.00 3.71
5254 5706 4.220821 TCTTCAAATTAGACGTCTCCAGCT 59.779 41.667 23.89 0.00 0.00 4.24
5269 5721 1.563410 CCAGCTCTTCCCTCAAATCCT 59.437 52.381 0.00 0.00 0.00 3.24
5556 6008 6.387192 TCAACCTCTTAATCCCTGAAATCA 57.613 37.500 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.885907 TCAATTTCTTCCTGGATGCTCATC 59.114 41.667 0.00 1.35 37.11 2.92
13 14 5.184671 ACTTTCAATTTCTTCCTGGATGCTC 59.815 40.000 0.00 0.00 0.00 4.26
28 29 6.655078 AACATGCTCCACTTACTTTCAATT 57.345 33.333 0.00 0.00 0.00 2.32
34 35 5.770162 AGCTTAAAACATGCTCCACTTACTT 59.230 36.000 0.00 0.00 32.36 2.24
35 36 5.316987 AGCTTAAAACATGCTCCACTTACT 58.683 37.500 0.00 0.00 32.36 2.24
36 37 5.629079 AGCTTAAAACATGCTCCACTTAC 57.371 39.130 0.00 0.00 32.36 2.34
37 38 5.767665 TGAAGCTTAAAACATGCTCCACTTA 59.232 36.000 0.00 0.00 36.67 2.24
54 55 4.021104 GCCTTTATGGAACCTTTGAAGCTT 60.021 41.667 0.00 0.00 38.35 3.74
63 64 2.507471 CTCTCCTGCCTTTATGGAACCT 59.493 50.000 0.00 0.00 38.35 3.50
65 66 3.636153 ACTCTCCTGCCTTTATGGAAC 57.364 47.619 0.00 0.00 38.35 3.62
93 95 1.421268 TGCGCCAATGATCCTATCCTT 59.579 47.619 4.18 0.00 0.00 3.36
105 107 2.238847 TAGAGAAGCCGTGCGCCAAT 62.239 55.000 4.18 0.00 38.78 3.16
133 135 2.490991 ACGTTAGACCAGGTTTGAAGC 58.509 47.619 0.00 0.00 0.00 3.86
144 146 2.498885 ACCCTTCATGGTACGTTAGACC 59.501 50.000 0.00 0.00 36.67 3.85
147 149 6.019318 CGAAATAACCCTTCATGGTACGTTAG 60.019 42.308 0.00 0.00 37.76 2.34
152 154 4.269363 CGTCGAAATAACCCTTCATGGTAC 59.731 45.833 0.00 0.00 37.76 3.34
167 169 1.719780 GTCAGAAAGCGACGTCGAAAT 59.280 47.619 39.74 23.82 43.02 2.17
183 185 1.728971 GAACAATGGTCTGCTCGTCAG 59.271 52.381 0.00 1.88 44.21 3.51
184 186 1.344438 AGAACAATGGTCTGCTCGTCA 59.656 47.619 0.00 0.00 0.00 4.35
185 187 2.086054 AGAACAATGGTCTGCTCGTC 57.914 50.000 0.00 0.00 0.00 4.20
186 188 2.146342 CAAGAACAATGGTCTGCTCGT 58.854 47.619 0.00 0.00 0.00 4.18
187 189 2.096069 CACAAGAACAATGGTCTGCTCG 60.096 50.000 0.00 0.00 0.00 5.03
235 237 4.935808 TCTTCCTCGGCTTGAAATAAGAAC 59.064 41.667 0.00 0.00 0.00 3.01
237 239 4.819105 TCTTCCTCGGCTTGAAATAAGA 57.181 40.909 0.00 0.00 0.00 2.10
248 250 0.179189 CGCAACAATTCTTCCTCGGC 60.179 55.000 0.00 0.00 0.00 5.54
274 276 6.201234 GCATTTCTTTATAGGAGAGAACGACC 59.799 42.308 0.00 0.00 0.00 4.79
278 280 6.757010 TCGTGCATTTCTTTATAGGAGAGAAC 59.243 38.462 0.00 0.00 0.00 3.01
283 285 7.203910 AGTAGTCGTGCATTTCTTTATAGGAG 58.796 38.462 0.00 0.00 0.00 3.69
289 291 7.768240 TCTCATAGTAGTCGTGCATTTCTTTA 58.232 34.615 0.00 0.00 0.00 1.85
290 292 6.631016 TCTCATAGTAGTCGTGCATTTCTTT 58.369 36.000 0.00 0.00 0.00 2.52
306 308 4.103785 ACCATATGCAAGCCTTCTCATAGT 59.896 41.667 0.00 0.00 0.00 2.12
318 320 1.675483 TGCGGCTTTACCATATGCAAG 59.325 47.619 0.00 0.54 39.03 4.01
364 366 1.338136 AAGGTATGTGCTCTCCCCCG 61.338 60.000 0.00 0.00 0.00 5.73
365 367 0.181350 CAAGGTATGTGCTCTCCCCC 59.819 60.000 0.00 0.00 0.00 5.40
405 407 0.608856 AACACCTTCATCATGGCGCA 60.609 50.000 10.83 0.00 0.00 6.09
406 408 0.527565 AAACACCTTCATCATGGCGC 59.472 50.000 0.00 0.00 0.00 6.53
409 411 3.366273 CGGTTCAAACACCTTCATCATGG 60.366 47.826 0.00 0.00 34.22 3.66
413 415 3.564225 ACTTCGGTTCAAACACCTTCATC 59.436 43.478 0.00 0.00 34.22 2.92
437 439 2.554462 CTCGACAGTTGGTTCTCTCAGA 59.446 50.000 0.00 0.00 0.00 3.27
440 442 1.887198 TCCTCGACAGTTGGTTCTCTC 59.113 52.381 0.00 0.00 0.00 3.20
442 444 1.340248 TGTCCTCGACAGTTGGTTCTC 59.660 52.381 0.00 0.00 37.67 2.87
443 445 1.068741 GTGTCCTCGACAGTTGGTTCT 59.931 52.381 0.00 0.00 43.57 3.01
444 446 1.499049 GTGTCCTCGACAGTTGGTTC 58.501 55.000 0.00 0.00 43.57 3.62
453 492 2.712057 TAACTTTCCGTGTCCTCGAC 57.288 50.000 0.00 0.00 0.00 4.20
460 499 2.858745 ACTGCCAATAACTTTCCGTGT 58.141 42.857 0.00 0.00 0.00 4.49
461 500 3.564511 CAACTGCCAATAACTTTCCGTG 58.435 45.455 0.00 0.00 0.00 4.94
479 518 2.352127 GGAAACATCTTGCTGCTCCAAC 60.352 50.000 0.00 0.00 0.00 3.77
486 525 5.431765 ACATACCTAGGAAACATCTTGCTG 58.568 41.667 17.98 0.00 0.00 4.41
490 529 5.189145 ACCGAACATACCTAGGAAACATCTT 59.811 40.000 17.98 0.00 0.00 2.40
491 530 4.715297 ACCGAACATACCTAGGAAACATCT 59.285 41.667 17.98 0.00 0.00 2.90
492 531 5.019785 ACCGAACATACCTAGGAAACATC 57.980 43.478 17.98 7.14 0.00 3.06
493 532 5.046159 TGAACCGAACATACCTAGGAAACAT 60.046 40.000 17.98 0.00 0.00 2.71
494 533 4.283978 TGAACCGAACATACCTAGGAAACA 59.716 41.667 17.98 0.00 0.00 2.83
495 534 4.824289 TGAACCGAACATACCTAGGAAAC 58.176 43.478 17.98 0.00 0.00 2.78
496 535 4.529377 ACTGAACCGAACATACCTAGGAAA 59.471 41.667 17.98 3.03 0.00 3.13
497 536 4.091549 ACTGAACCGAACATACCTAGGAA 58.908 43.478 17.98 0.00 0.00 3.36
498 537 3.705051 ACTGAACCGAACATACCTAGGA 58.295 45.455 17.98 0.00 0.00 2.94
499 538 4.081862 TCAACTGAACCGAACATACCTAGG 60.082 45.833 7.41 7.41 0.00 3.02
500 539 5.068234 TCAACTGAACCGAACATACCTAG 57.932 43.478 0.00 0.00 0.00 3.02
501 540 5.670792 ATCAACTGAACCGAACATACCTA 57.329 39.130 0.00 0.00 0.00 3.08
502 541 4.553330 ATCAACTGAACCGAACATACCT 57.447 40.909 0.00 0.00 0.00 3.08
503 542 4.671766 GCAATCAACTGAACCGAACATACC 60.672 45.833 0.00 0.00 0.00 2.73
504 543 4.083537 TGCAATCAACTGAACCGAACATAC 60.084 41.667 0.00 0.00 0.00 2.39
505 544 4.068599 TGCAATCAACTGAACCGAACATA 58.931 39.130 0.00 0.00 0.00 2.29
506 545 2.884012 TGCAATCAACTGAACCGAACAT 59.116 40.909 0.00 0.00 0.00 2.71
507 546 2.293170 TGCAATCAACTGAACCGAACA 58.707 42.857 0.00 0.00 0.00 3.18
508 547 3.347958 TTGCAATCAACTGAACCGAAC 57.652 42.857 0.00 0.00 0.00 3.95
509 548 4.582701 ATTTGCAATCAACTGAACCGAA 57.417 36.364 0.00 0.00 30.75 4.30
510 549 4.759693 AGTATTTGCAATCAACTGAACCGA 59.240 37.500 0.00 0.00 30.75 4.69
511 550 5.046910 AGTATTTGCAATCAACTGAACCG 57.953 39.130 0.00 0.00 30.75 4.44
512 551 8.810652 TTTTAGTATTTGCAATCAACTGAACC 57.189 30.769 15.36 0.00 30.75 3.62
514 553 8.924691 GCATTTTAGTATTTGCAATCAACTGAA 58.075 29.630 15.36 11.87 35.22 3.02
515 554 8.087136 TGCATTTTAGTATTTGCAATCAACTGA 58.913 29.630 15.36 7.57 41.76 3.41
516 555 8.242085 TGCATTTTAGTATTTGCAATCAACTG 57.758 30.769 15.36 4.54 41.76 3.16
517 556 8.830201 TTGCATTTTAGTATTTGCAATCAACT 57.170 26.923 0.00 7.01 46.76 3.16
524 563 6.989169 ACCTGTTTTGCATTTTAGTATTTGCA 59.011 30.769 0.00 0.00 42.90 4.08
525 564 7.420184 ACCTGTTTTGCATTTTAGTATTTGC 57.580 32.000 0.00 0.00 35.67 3.68
528 567 9.187455 CGTTTACCTGTTTTGCATTTTAGTATT 57.813 29.630 0.00 0.00 0.00 1.89
529 568 7.810759 CCGTTTACCTGTTTTGCATTTTAGTAT 59.189 33.333 0.00 0.00 0.00 2.12
530 569 7.140048 CCGTTTACCTGTTTTGCATTTTAGTA 58.860 34.615 0.00 0.00 0.00 1.82
531 570 5.980715 CCGTTTACCTGTTTTGCATTTTAGT 59.019 36.000 0.00 0.00 0.00 2.24
532 571 5.980715 ACCGTTTACCTGTTTTGCATTTTAG 59.019 36.000 0.00 0.00 0.00 1.85
533 572 5.903810 ACCGTTTACCTGTTTTGCATTTTA 58.096 33.333 0.00 0.00 0.00 1.52
534 573 4.760878 ACCGTTTACCTGTTTTGCATTTT 58.239 34.783 0.00 0.00 0.00 1.82
535 574 4.394439 ACCGTTTACCTGTTTTGCATTT 57.606 36.364 0.00 0.00 0.00 2.32
536 575 5.517322 TTACCGTTTACCTGTTTTGCATT 57.483 34.783 0.00 0.00 0.00 3.56
537 576 5.517322 TTTACCGTTTACCTGTTTTGCAT 57.483 34.783 0.00 0.00 0.00 3.96
538 577 4.978083 TTTACCGTTTACCTGTTTTGCA 57.022 36.364 0.00 0.00 0.00 4.08
539 578 6.641989 CATTTTTACCGTTTACCTGTTTTGC 58.358 36.000 0.00 0.00 0.00 3.68
540 579 6.255887 TGCATTTTTACCGTTTACCTGTTTTG 59.744 34.615 0.00 0.00 0.00 2.44
541 580 6.256104 GTGCATTTTTACCGTTTACCTGTTTT 59.744 34.615 0.00 0.00 0.00 2.43
542 581 5.749588 GTGCATTTTTACCGTTTACCTGTTT 59.250 36.000 0.00 0.00 0.00 2.83
543 582 5.068067 AGTGCATTTTTACCGTTTACCTGTT 59.932 36.000 0.00 0.00 0.00 3.16
544 583 4.581409 AGTGCATTTTTACCGTTTACCTGT 59.419 37.500 0.00 0.00 0.00 4.00
545 584 5.116069 AGTGCATTTTTACCGTTTACCTG 57.884 39.130 0.00 0.00 0.00 4.00
546 585 5.299782 TGAAGTGCATTTTTACCGTTTACCT 59.700 36.000 0.00 0.00 0.00 3.08
547 586 5.521544 TGAAGTGCATTTTTACCGTTTACC 58.478 37.500 0.00 0.00 0.00 2.85
548 587 6.088883 CCATGAAGTGCATTTTTACCGTTTAC 59.911 38.462 0.00 0.00 34.15 2.01
549 588 6.153067 CCATGAAGTGCATTTTTACCGTTTA 58.847 36.000 0.00 0.00 34.15 2.01
550 589 4.987912 CCATGAAGTGCATTTTTACCGTTT 59.012 37.500 0.00 0.00 34.15 3.60
551 590 4.038642 ACCATGAAGTGCATTTTTACCGTT 59.961 37.500 0.00 0.00 34.15 4.44
552 591 3.572255 ACCATGAAGTGCATTTTTACCGT 59.428 39.130 0.00 0.00 34.15 4.83
553 592 3.919804 CACCATGAAGTGCATTTTTACCG 59.080 43.478 0.00 0.00 34.15 4.02
554 593 5.132897 TCACCATGAAGTGCATTTTTACC 57.867 39.130 0.00 0.00 37.68 2.85
555 594 7.656707 AATTCACCATGAAGTGCATTTTTAC 57.343 32.000 0.00 0.00 40.05 2.01
556 595 9.770097 TTAAATTCACCATGAAGTGCATTTTTA 57.230 25.926 14.29 5.15 39.51 1.52
557 596 8.674263 TTAAATTCACCATGAAGTGCATTTTT 57.326 26.923 14.29 7.05 39.51 1.94
563 602 6.019318 GCATCATTAAATTCACCATGAAGTGC 60.019 38.462 0.00 0.00 40.05 4.40
587 626 4.443913 AACACCCGTAATACAAATTGGC 57.556 40.909 0.00 0.00 0.00 4.52
844 898 3.604875 TTGGTAACCACGAAGAGGATC 57.395 47.619 0.00 0.00 42.26 3.36
969 1027 2.029073 CCAACAGTGACGCCTCGT 59.971 61.111 0.00 0.00 45.10 4.18
982 1040 0.674534 ATATCTCTCCGTCGCCCAAC 59.325 55.000 0.00 0.00 0.00 3.77
1079 1152 3.302347 AAGTTGAGAGCTCCGGCCG 62.302 63.158 21.04 21.04 39.73 6.13
1083 1156 0.241213 TCGTGAAGTTGAGAGCTCCG 59.759 55.000 10.93 3.36 0.00 4.63
1084 1157 1.403514 CCTCGTGAAGTTGAGAGCTCC 60.404 57.143 10.93 2.40 34.04 4.70
1189 1270 1.234821 CAAGCGCTAGGACCAAACAA 58.765 50.000 12.05 0.00 0.00 2.83
1191 1272 1.235724 AACAAGCGCTAGGACCAAAC 58.764 50.000 12.05 0.00 0.00 2.93
1249 1330 2.356135 AGAAACCCATCAAATCGACGG 58.644 47.619 0.00 0.00 0.00 4.79
1276 1358 1.135228 ACTGAACCCGCAACACAAAAC 60.135 47.619 0.00 0.00 0.00 2.43
1370 1452 3.389329 ACGGAGCCAATAAGATGTGAGAT 59.611 43.478 0.00 0.00 0.00 2.75
1408 1490 8.517878 GCCATGAAGCTACATGTAAATATGAAT 58.482 33.333 7.06 0.00 44.00 2.57
1409 1491 7.720957 AGCCATGAAGCTACATGTAAATATGAA 59.279 33.333 7.06 0.00 42.70 2.57
1447 1529 6.423182 TGGAAGGAACTCAAGAAAGAGAAAA 58.577 36.000 0.00 0.00 38.49 2.29
1482 1564 7.397221 TGGAGAAATTACAATCAGTGATCACT 58.603 34.615 22.89 22.89 43.61 3.41
1522 1643 3.073062 ACCAACATAGAAGGTGCTCTGTT 59.927 43.478 0.00 0.00 36.14 3.16
1523 1644 2.639839 ACCAACATAGAAGGTGCTCTGT 59.360 45.455 0.00 0.00 33.57 3.41
1590 1713 4.989277 TGCCTGGCACTGAATTATCATAT 58.011 39.130 19.30 0.00 31.45 1.78
1677 1800 9.866655 ATAAGTCTTAAAATTGCCCATGATCTA 57.133 29.630 0.00 0.00 0.00 1.98
1679 1802 8.632679 TCATAAGTCTTAAAATTGCCCATGATC 58.367 33.333 0.00 0.00 0.00 2.92
1681 1804 7.953005 TCATAAGTCTTAAAATTGCCCATGA 57.047 32.000 0.00 0.00 0.00 3.07
1686 1809 7.035004 TGCACATCATAAGTCTTAAAATTGCC 58.965 34.615 0.00 0.00 0.00 4.52
1691 1814 9.844790 CTGATTTGCACATCATAAGTCTTAAAA 57.155 29.630 15.59 0.00 32.59 1.52
1695 1818 5.448225 CGCTGATTTGCACATCATAAGTCTT 60.448 40.000 15.59 0.00 32.59 3.01
1696 1819 4.034858 CGCTGATTTGCACATCATAAGTCT 59.965 41.667 15.59 0.00 32.59 3.24
1697 1820 4.277258 CGCTGATTTGCACATCATAAGTC 58.723 43.478 15.59 3.40 32.59 3.01
1698 1821 3.065786 CCGCTGATTTGCACATCATAAGT 59.934 43.478 15.59 0.00 32.59 2.24
1699 1822 3.313249 TCCGCTGATTTGCACATCATAAG 59.687 43.478 15.59 9.86 32.59 1.73
1700 1823 3.277715 TCCGCTGATTTGCACATCATAA 58.722 40.909 15.59 0.18 32.59 1.90
1701 1824 2.916640 TCCGCTGATTTGCACATCATA 58.083 42.857 15.59 0.48 32.59 2.15
1702 1825 1.753930 TCCGCTGATTTGCACATCAT 58.246 45.000 15.59 0.00 32.59 2.45
1703 1826 1.753930 ATCCGCTGATTTGCACATCA 58.246 45.000 14.56 14.56 0.00 3.07
1704 1827 2.097954 TGAATCCGCTGATTTGCACATC 59.902 45.455 5.88 5.88 41.30 3.06
1705 1828 2.093890 TGAATCCGCTGATTTGCACAT 58.906 42.857 4.76 0.00 41.30 3.21
1706 1829 1.469703 CTGAATCCGCTGATTTGCACA 59.530 47.619 4.76 0.00 41.30 4.57
1707 1830 1.739466 TCTGAATCCGCTGATTTGCAC 59.261 47.619 4.76 0.00 41.30 4.57
1708 1831 2.112380 TCTGAATCCGCTGATTTGCA 57.888 45.000 4.76 0.00 41.30 4.08
1709 1832 3.492421 TTTCTGAATCCGCTGATTTGC 57.508 42.857 4.76 0.00 41.30 3.68
1710 1833 6.789262 AGTTATTTCTGAATCCGCTGATTTG 58.211 36.000 4.76 2.35 41.30 2.32
1711 1834 7.396540 AAGTTATTTCTGAATCCGCTGATTT 57.603 32.000 4.76 0.00 41.30 2.17
1712 1835 7.396540 AAAGTTATTTCTGAATCCGCTGATT 57.603 32.000 2.68 2.68 43.91 2.57
1713 1836 7.396540 AAAAGTTATTTCTGAATCCGCTGAT 57.603 32.000 0.00 0.00 0.00 2.90
1714 1837 6.128007 GGAAAAGTTATTTCTGAATCCGCTGA 60.128 38.462 0.00 0.00 0.00 4.26
1715 1838 6.030228 GGAAAAGTTATTTCTGAATCCGCTG 58.970 40.000 0.00 0.00 0.00 5.18
1716 1839 5.163754 CGGAAAAGTTATTTCTGAATCCGCT 60.164 40.000 10.65 0.00 40.50 5.52
1717 1840 5.028375 CGGAAAAGTTATTTCTGAATCCGC 58.972 41.667 10.65 0.00 40.50 5.54
1718 1841 5.123344 ACCGGAAAAGTTATTTCTGAATCCG 59.877 40.000 9.46 14.58 45.03 4.18
1719 1842 6.150474 TCACCGGAAAAGTTATTTCTGAATCC 59.850 38.462 9.46 0.00 37.04 3.01
1720 1843 7.021790 GTCACCGGAAAAGTTATTTCTGAATC 58.978 38.462 9.46 0.00 37.04 2.52
1721 1844 6.715264 AGTCACCGGAAAAGTTATTTCTGAAT 59.285 34.615 9.46 0.00 37.04 2.57
1722 1845 6.017440 CAGTCACCGGAAAAGTTATTTCTGAA 60.017 38.462 9.46 0.00 37.04 3.02
1723 1846 5.468746 CAGTCACCGGAAAAGTTATTTCTGA 59.531 40.000 9.46 0.00 37.04 3.27
1724 1847 5.468746 TCAGTCACCGGAAAAGTTATTTCTG 59.531 40.000 9.46 3.34 35.21 3.02
1739 1862 3.283751 ACTCTCTATTCCTCAGTCACCG 58.716 50.000 0.00 0.00 0.00 4.94
1741 1864 5.906113 TGAACTCTCTATTCCTCAGTCAC 57.094 43.478 0.00 0.00 0.00 3.67
1765 1888 8.165239 AGCAGACTTGTTCACAAAAATACATA 57.835 30.769 0.00 0.00 35.15 2.29
1766 1889 7.013655 AGAGCAGACTTGTTCACAAAAATACAT 59.986 33.333 0.00 0.00 37.04 2.29
1769 1892 6.318648 ACAGAGCAGACTTGTTCACAAAAATA 59.681 34.615 0.00 0.00 37.04 1.40
1770 1893 5.126061 ACAGAGCAGACTTGTTCACAAAAAT 59.874 36.000 0.00 0.00 37.04 1.82
1771 1894 4.458989 ACAGAGCAGACTTGTTCACAAAAA 59.541 37.500 0.00 0.00 37.04 1.94
1773 1896 3.609853 ACAGAGCAGACTTGTTCACAAA 58.390 40.909 0.00 0.00 37.04 2.83
1774 1897 3.266510 ACAGAGCAGACTTGTTCACAA 57.733 42.857 0.00 0.00 37.04 3.33
1777 1900 5.182487 TGTAAAACAGAGCAGACTTGTTCA 58.818 37.500 0.00 0.00 37.04 3.18
1778 1901 5.734855 TGTAAAACAGAGCAGACTTGTTC 57.265 39.130 0.00 0.00 35.03 3.18
1781 1904 5.741388 AGTTGTAAAACAGAGCAGACTTG 57.259 39.130 0.00 0.00 0.00 3.16
1784 1907 6.598753 TGTAAGTTGTAAAACAGAGCAGAC 57.401 37.500 0.00 0.00 0.00 3.51
1785 1908 5.236478 GCTGTAAGTTGTAAAACAGAGCAGA 59.764 40.000 6.87 0.00 41.47 4.26
1786 1909 5.007626 TGCTGTAAGTTGTAAAACAGAGCAG 59.992 40.000 6.87 5.12 41.47 4.24
1787 1910 4.878971 TGCTGTAAGTTGTAAAACAGAGCA 59.121 37.500 6.87 4.38 41.47 4.26
1788 1911 5.007724 ACTGCTGTAAGTTGTAAAACAGAGC 59.992 40.000 6.87 0.00 41.47 4.09
1789 1912 6.037172 ACACTGCTGTAAGTTGTAAAACAGAG 59.963 38.462 6.87 4.59 41.47 3.35
1790 1913 5.878116 ACACTGCTGTAAGTTGTAAAACAGA 59.122 36.000 6.87 0.00 41.47 3.41
1791 1914 6.119144 ACACTGCTGTAAGTTGTAAAACAG 57.881 37.500 0.00 0.00 41.78 3.16
1792 1915 6.503589 AACACTGCTGTAAGTTGTAAAACA 57.496 33.333 0.00 0.00 35.30 2.83
1793 1916 9.511144 AAATAACACTGCTGTAAGTTGTAAAAC 57.489 29.630 8.97 0.00 35.30 2.43
1797 1920 9.938280 AGATAAATAACACTGCTGTAAGTTGTA 57.062 29.630 8.97 1.73 35.30 2.41
1798 1921 8.848474 AGATAAATAACACTGCTGTAAGTTGT 57.152 30.769 8.97 1.37 35.30 3.32
1799 1922 9.155975 AGAGATAAATAACACTGCTGTAAGTTG 57.844 33.333 8.97 0.00 35.30 3.16
1800 1923 9.726438 AAGAGATAAATAACACTGCTGTAAGTT 57.274 29.630 0.00 0.37 35.30 2.66
1801 1924 9.155975 CAAGAGATAAATAACACTGCTGTAAGT 57.844 33.333 0.00 0.00 35.30 2.24
1802 1925 8.119226 GCAAGAGATAAATAACACTGCTGTAAG 58.881 37.037 0.00 0.00 0.00 2.34
1803 1926 7.824289 AGCAAGAGATAAATAACACTGCTGTAA 59.176 33.333 0.00 0.00 0.00 2.41
1804 1927 7.331026 AGCAAGAGATAAATAACACTGCTGTA 58.669 34.615 0.00 0.00 0.00 2.74
1805 1928 6.176183 AGCAAGAGATAAATAACACTGCTGT 58.824 36.000 0.00 0.00 0.00 4.40
1806 1929 6.674694 AGCAAGAGATAAATAACACTGCTG 57.325 37.500 0.00 0.00 0.00 4.41
1807 1930 7.281100 GGTAAGCAAGAGATAAATAACACTGCT 59.719 37.037 0.00 0.00 0.00 4.24
1808 1931 7.281100 AGGTAAGCAAGAGATAAATAACACTGC 59.719 37.037 0.00 0.00 0.00 4.40
1809 1932 8.607459 CAGGTAAGCAAGAGATAAATAACACTG 58.393 37.037 0.00 0.00 0.00 3.66
1810 1933 8.540388 TCAGGTAAGCAAGAGATAAATAACACT 58.460 33.333 0.00 0.00 0.00 3.55
1811 1934 8.718102 TCAGGTAAGCAAGAGATAAATAACAC 57.282 34.615 0.00 0.00 0.00 3.32
1812 1935 9.733556 TTTCAGGTAAGCAAGAGATAAATAACA 57.266 29.630 0.00 0.00 0.00 2.41
1813 1936 9.989869 GTTTCAGGTAAGCAAGAGATAAATAAC 57.010 33.333 0.00 0.00 0.00 1.89
1814 1937 9.733556 TGTTTCAGGTAAGCAAGAGATAAATAA 57.266 29.630 0.00 0.00 0.00 1.40
1815 1938 9.905713 ATGTTTCAGGTAAGCAAGAGATAAATA 57.094 29.630 0.00 0.00 31.56 1.40
1816 1939 8.680903 CATGTTTCAGGTAAGCAAGAGATAAAT 58.319 33.333 0.00 0.00 31.56 1.40
1817 1940 7.665559 ACATGTTTCAGGTAAGCAAGAGATAAA 59.334 33.333 0.00 0.00 31.56 1.40
1818 1941 7.119699 CACATGTTTCAGGTAAGCAAGAGATAA 59.880 37.037 0.00 0.00 31.56 1.75
1819 1942 6.595326 CACATGTTTCAGGTAAGCAAGAGATA 59.405 38.462 0.00 0.00 31.56 1.98
1820 1943 5.413833 CACATGTTTCAGGTAAGCAAGAGAT 59.586 40.000 0.00 0.00 31.56 2.75
1821 1944 4.756642 CACATGTTTCAGGTAAGCAAGAGA 59.243 41.667 0.00 0.00 31.56 3.10
1822 1945 4.516698 ACACATGTTTCAGGTAAGCAAGAG 59.483 41.667 0.00 0.00 31.56 2.85
1831 1954 4.142182 CCTTGTTCAACACATGTTTCAGGT 60.142 41.667 0.00 0.00 35.83 4.00
1857 1980 4.019792 TGCTCTGTTCTCTGCCAAATTA 57.980 40.909 0.00 0.00 0.00 1.40
1884 2007 6.644347 CAGAGGATTTTAGCTGGAGTTTAGA 58.356 40.000 0.00 0.00 0.00 2.10
1932 2089 2.365617 GTGTTGAGACTTGAGAGGTGGA 59.634 50.000 0.00 0.00 0.00 4.02
1944 2101 8.538039 GTTAGTACTGTACTTTTGTGTTGAGAC 58.462 37.037 24.09 4.82 40.14 3.36
2101 2258 2.185350 CCTAGTGCACTGGCGGAG 59.815 66.667 29.57 17.40 45.35 4.63
2105 2262 1.522580 GCTAGCCTAGTGCACTGGC 60.523 63.158 34.43 34.43 46.42 4.85
2150 2307 3.744426 TCCGAAAAATTCAAGAGACGACC 59.256 43.478 0.00 0.00 0.00 4.79
2151 2308 4.985044 TCCGAAAAATTCAAGAGACGAC 57.015 40.909 0.00 0.00 0.00 4.34
2187 2344 0.321298 ACGCCTAGAAACCAACGCAT 60.321 50.000 0.00 0.00 0.00 4.73
2313 2475 5.595885 TGCACATTTTTCAATTCTTCCGAA 58.404 33.333 0.00 0.00 0.00 4.30
2320 2482 7.704789 ACTTCTTCTGCACATTTTTCAATTC 57.295 32.000 0.00 0.00 0.00 2.17
2323 2485 6.397272 ACAACTTCTTCTGCACATTTTTCAA 58.603 32.000 0.00 0.00 0.00 2.69
2344 2506 3.378742 ACGCACAAATGGTCAAGTTACAA 59.621 39.130 0.00 0.00 0.00 2.41
2346 2508 3.296628 CACGCACAAATGGTCAAGTTAC 58.703 45.455 0.00 0.00 0.00 2.50
2347 2509 2.292016 CCACGCACAAATGGTCAAGTTA 59.708 45.455 0.00 0.00 0.00 2.24
2348 2510 1.066908 CCACGCACAAATGGTCAAGTT 59.933 47.619 0.00 0.00 0.00 2.66
2350 2512 0.950836 TCCACGCACAAATGGTCAAG 59.049 50.000 0.00 0.00 37.27 3.02
2376 2540 4.914312 TTGACACGGTGAATTCGAATAC 57.086 40.909 16.29 6.79 0.00 1.89
2542 2749 1.174712 ATGAGGTGCAACTGGTGTGC 61.175 55.000 10.28 0.00 36.74 4.57
2623 2837 2.827921 CCTGTTTTCATGAAGGGAAGGG 59.172 50.000 8.41 4.41 0.00 3.95
2624 2838 3.760684 CTCCTGTTTTCATGAAGGGAAGG 59.239 47.826 8.41 13.58 0.00 3.46
2625 2839 3.760684 CCTCCTGTTTTCATGAAGGGAAG 59.239 47.826 8.41 5.55 0.00 3.46
2626 2840 3.397618 TCCTCCTGTTTTCATGAAGGGAA 59.602 43.478 8.41 0.00 0.00 3.97
2627 2841 2.986019 TCCTCCTGTTTTCATGAAGGGA 59.014 45.455 8.41 13.03 0.00 4.20
2628 2842 3.439857 TCCTCCTGTTTTCATGAAGGG 57.560 47.619 8.41 9.74 0.00 3.95
2629 2843 4.655963 TCTTCCTCCTGTTTTCATGAAGG 58.344 43.478 8.41 6.54 0.00 3.46
2657 2871 7.288560 AGTACTCTAGACCTTTCGGATTGATA 58.711 38.462 0.00 0.00 0.00 2.15
2658 2872 6.130569 AGTACTCTAGACCTTTCGGATTGAT 58.869 40.000 0.00 0.00 0.00 2.57
2660 2874 5.838531 AGTACTCTAGACCTTTCGGATTG 57.161 43.478 0.00 0.00 0.00 2.67
2666 2880 7.039853 AGGTTGTTGTAGTACTCTAGACCTTTC 60.040 40.741 0.00 0.00 0.00 2.62
2672 2886 9.524496 TTTATCAGGTTGTTGTAGTACTCTAGA 57.476 33.333 0.00 0.00 0.00 2.43
2771 2985 3.882888 AGTGATGGGTAACACAACACAAG 59.117 43.478 14.87 0.00 40.47 3.16
2779 2993 1.453155 CCTGCAGTGATGGGTAACAC 58.547 55.000 13.81 0.00 39.74 3.32
2780 2994 0.327924 CCCTGCAGTGATGGGTAACA 59.672 55.000 13.81 0.00 36.32 2.41
2781 2995 0.618458 TCCCTGCAGTGATGGGTAAC 59.382 55.000 13.81 0.00 41.58 2.50
2782 2996 1.490490 GATCCCTGCAGTGATGGGTAA 59.510 52.381 16.91 0.00 41.58 2.85
2783 2997 1.131638 GATCCCTGCAGTGATGGGTA 58.868 55.000 16.91 0.00 41.58 3.69
2786 3000 0.179026 CTGGATCCCTGCAGTGATGG 60.179 60.000 16.91 8.43 36.19 3.51
2787 3001 0.835276 TCTGGATCCCTGCAGTGATG 59.165 55.000 16.91 2.62 41.30 3.07
2788 3002 1.817087 ATCTGGATCCCTGCAGTGAT 58.183 50.000 11.80 11.80 41.30 3.06
2790 3004 1.764723 TGTATCTGGATCCCTGCAGTG 59.235 52.381 13.81 0.00 41.30 3.66
2791 3005 2.180946 TGTATCTGGATCCCTGCAGT 57.819 50.000 13.81 0.00 41.30 4.40
2799 3013 4.000331 CAGGGTGACATGTATCTGGATC 58.000 50.000 0.00 0.00 37.35 3.36
2921 3135 4.780554 TCCAACACCCATCAGAATGTACTA 59.219 41.667 0.00 0.00 37.40 1.82
2922 3136 3.587061 TCCAACACCCATCAGAATGTACT 59.413 43.478 0.00 0.00 37.40 2.73
2964 3178 1.478916 CACCCATCAGAATGCAATGCA 59.521 47.619 11.44 11.44 44.86 3.96
2965 3179 1.479323 ACACCCATCAGAATGCAATGC 59.521 47.619 0.00 0.00 34.76 3.56
2966 3180 3.517602 CAACACCCATCAGAATGCAATG 58.482 45.455 0.00 0.00 34.76 2.82
2967 3181 2.093869 GCAACACCCATCAGAATGCAAT 60.094 45.455 0.00 0.00 34.76 3.56
2968 3182 1.273048 GCAACACCCATCAGAATGCAA 59.727 47.619 0.00 0.00 34.76 4.08
3084 3304 2.461110 GGCGATGGCGATCACGTTT 61.461 57.895 9.52 0.00 41.24 3.60
3381 3601 7.146715 ACATGTCCATGGAGAAGATCTTAAT 57.853 36.000 19.89 0.00 42.91 1.40
3382 3602 6.566079 ACATGTCCATGGAGAAGATCTTAA 57.434 37.500 19.89 0.00 42.91 1.85
3383 3603 6.166984 GACATGTCCATGGAGAAGATCTTA 57.833 41.667 19.89 0.00 42.91 2.10
3384 3604 5.033589 GACATGTCCATGGAGAAGATCTT 57.966 43.478 19.89 7.95 42.91 2.40
3385 3605 4.686191 GACATGTCCATGGAGAAGATCT 57.314 45.455 19.89 0.00 42.91 2.75
3399 3619 7.216973 AGATAGTAGATAAACGGGACATGTC 57.783 40.000 17.91 17.91 0.00 3.06
3400 3620 8.740906 CATAGATAGTAGATAAACGGGACATGT 58.259 37.037 0.00 0.00 0.00 3.21
3401 3621 8.957466 TCATAGATAGTAGATAAACGGGACATG 58.043 37.037 0.00 0.00 0.00 3.21
3402 3622 9.702253 ATCATAGATAGTAGATAAACGGGACAT 57.298 33.333 0.00 0.00 0.00 3.06
3403 3623 9.175312 GATCATAGATAGTAGATAAACGGGACA 57.825 37.037 0.00 0.00 0.00 4.02
3404 3624 9.398538 AGATCATAGATAGTAGATAAACGGGAC 57.601 37.037 0.00 0.00 0.00 4.46
3424 3644 9.836179 AGAAGGTCCAAGTTATAGATAGATCAT 57.164 33.333 0.00 0.00 0.00 2.45
3425 3645 9.661954 AAGAAGGTCCAAGTTATAGATAGATCA 57.338 33.333 0.00 0.00 0.00 2.92
3427 3647 9.440761 ACAAGAAGGTCCAAGTTATAGATAGAT 57.559 33.333 0.00 0.00 0.00 1.98
3428 3648 8.840200 ACAAGAAGGTCCAAGTTATAGATAGA 57.160 34.615 0.00 0.00 0.00 1.98
3429 3649 9.892130 AAACAAGAAGGTCCAAGTTATAGATAG 57.108 33.333 0.00 0.00 0.00 2.08
3431 3651 9.892130 CTAAACAAGAAGGTCCAAGTTATAGAT 57.108 33.333 0.00 0.00 0.00 1.98
3433 3653 8.319146 TCCTAAACAAGAAGGTCCAAGTTATAG 58.681 37.037 0.00 0.00 34.30 1.31
3435 3655 7.086685 TCCTAAACAAGAAGGTCCAAGTTAT 57.913 36.000 0.00 0.00 34.30 1.89
3444 3686 5.515008 GGTCCAAGATCCTAAACAAGAAGGT 60.515 44.000 0.00 0.00 34.30 3.50
3554 3796 3.546543 TCGATGGCCCCACGGATC 61.547 66.667 0.00 0.00 0.00 3.36
3735 3977 6.791303 ACGACACAGTTATTTCATTGTTTGT 58.209 32.000 0.00 0.00 0.00 2.83
3740 3982 7.678194 AACAAACGACACAGTTATTTCATTG 57.322 32.000 0.00 0.00 33.41 2.82
3811 4053 9.521503 AAAATCAAAGAAAAGAGTAACAGAAGC 57.478 29.630 0.00 0.00 0.00 3.86
3832 4074 8.812147 ATTCGTCCAAAGAAAAGGTAAAAATC 57.188 30.769 0.00 0.00 0.00 2.17
3837 4079 6.981559 CCAAAATTCGTCCAAAGAAAAGGTAA 59.018 34.615 0.00 0.00 0.00 2.85
4084 4405 0.330604 ACTGCAGTGCCCATGATCTT 59.669 50.000 20.97 0.00 0.00 2.40
4154 4475 7.395772 TCTTTCAAACTATGGCAATGTGGAATA 59.604 33.333 0.00 0.00 0.00 1.75
4170 4491 9.139174 CGGCAATGTATATTTTTCTTTCAAACT 57.861 29.630 0.00 0.00 0.00 2.66
4179 4500 6.843069 ATTTGCCGGCAATGTATATTTTTC 57.157 33.333 40.32 0.00 35.70 2.29
4184 4506 5.125100 CAGAATTTGCCGGCAATGTATAT 57.875 39.130 40.32 27.54 35.70 0.86
4185 4507 4.566545 CAGAATTTGCCGGCAATGTATA 57.433 40.909 40.32 26.54 35.70 1.47
4221 4543 0.099436 GGTGATGAAGCGGCAATGTC 59.901 55.000 1.45 0.00 0.00 3.06
4224 4546 3.501396 CGGTGATGAAGCGGCAAT 58.499 55.556 1.45 0.00 45.98 3.56
4276 4723 3.282885 GTGGAAGAATAGGCCAGAAAGG 58.717 50.000 5.01 0.00 41.84 3.11
4322 4769 1.201647 TGACCGAGTCGATGAAGAACC 59.798 52.381 15.64 0.00 34.95 3.62
4374 4821 0.172578 CGAGTGTGCTCCCGATGTAA 59.827 55.000 0.00 0.00 38.49 2.41
4383 4830 2.356793 AGTGCAGCGAGTGTGCTC 60.357 61.111 0.00 0.00 45.23 4.26
4409 4856 7.702348 TCATCTTCAGTGATGTACAGAATAACG 59.298 37.037 0.33 0.00 43.03 3.18
4421 4868 9.932699 GAGACAAAATATTCATCTTCAGTGATG 57.067 33.333 0.00 0.00 43.66 3.07
4460 4910 6.382919 ACCCAATGGCTTAAACTCTACTAA 57.617 37.500 0.00 0.00 33.59 2.24
4472 4922 1.341080 CCTTGTGAACCCAATGGCTT 58.659 50.000 0.00 0.00 33.59 4.35
4505 4955 3.785887 TGGCTCCATTCCTACAATAAGGT 59.214 43.478 0.00 0.00 37.91 3.50
4507 4957 4.273480 CGTTGGCTCCATTCCTACAATAAG 59.727 45.833 0.00 0.00 31.21 1.73
4514 4964 1.271856 TCACGTTGGCTCCATTCCTA 58.728 50.000 0.00 0.00 0.00 2.94
4567 5017 0.756903 ATAGCCCGCCATAAACTCGT 59.243 50.000 0.00 0.00 0.00 4.18
4722 5172 0.319813 TGAGCATGTGACCTCGTGTG 60.320 55.000 0.00 0.00 0.00 3.82
5143 5595 1.985447 ATGCATCGCTTCGGCACAAG 61.985 55.000 0.00 0.00 40.83 3.16
5150 5602 1.154197 ATCATGGATGCATCGCTTCG 58.846 50.000 20.15 7.17 34.22 3.79
5250 5702 3.362870 AAGGATTTGAGGGAAGAGCTG 57.637 47.619 0.00 0.00 0.00 4.24
5254 5706 5.938125 CGAGTTAAAAGGATTTGAGGGAAGA 59.062 40.000 0.00 0.00 39.02 2.87
5556 6008 5.105351 TCAGGATCAATGAGTACATGACGTT 60.105 40.000 0.00 0.00 36.79 3.99


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.