Multiple sequence alignment - TraesCS1D01G231500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G231500 chr1D 100.000 3213 0 0 3381 6593 319929932 319933144 0.000000e+00 5934.0
1 TraesCS1D01G231500 chr1D 100.000 3069 0 0 1 3069 319926552 319929620 0.000000e+00 5668.0
2 TraesCS1D01G231500 chr1A 95.486 1883 62 14 4726 6593 403027874 403026000 0.000000e+00 2985.0
3 TraesCS1D01G231500 chr1A 84.806 1856 151 66 643 2432 403031676 403029886 0.000000e+00 1744.0
4 TraesCS1D01G231500 chr1A 89.037 301 31 2 2621 2920 403029693 403029394 8.070000e-99 372.0
5 TraesCS1D01G231500 chr1A 93.956 182 11 0 4493 4674 403028129 403027948 6.510000e-70 276.0
6 TraesCS1D01G231500 chr1A 84.028 144 11 10 2930 3065 482792375 482792514 1.930000e-25 128.0
7 TraesCS1D01G231500 chr1A 87.273 110 10 1 2482 2587 403029891 403029782 8.980000e-24 122.0
8 TraesCS1D01G231500 chr1B 92.107 2103 104 37 4492 6557 432819857 432821934 0.000000e+00 2907.0
9 TraesCS1D01G231500 chr1B 89.762 713 54 9 3807 4513 432819141 432819840 0.000000e+00 894.0
10 TraesCS1D01G231500 chr1B 87.859 626 30 19 1277 1865 432816475 432817091 0.000000e+00 693.0
11 TraesCS1D01G231500 chr1B 88.502 574 40 18 2030 2589 432817121 432817682 0.000000e+00 671.0
12 TraesCS1D01G231500 chr1B 83.673 686 60 24 636 1274 432815758 432816438 3.400000e-167 599.0
13 TraesCS1D01G231500 chr1B 89.293 467 30 8 2618 3069 432817769 432818230 9.590000e-158 568.0
14 TraesCS1D01G231500 chr1B 88.706 425 38 8 3381 3800 432818613 432819032 1.640000e-140 510.0
15 TraesCS1D01G231500 chr1B 81.948 421 52 14 2 416 580531569 580531167 1.060000e-87 335.0
16 TraesCS1D01G231500 chr1B 87.500 72 8 1 1895 1965 611778402 611778331 1.520000e-11 82.4
17 TraesCS1D01G231500 chr1B 88.462 52 2 3 1887 1936 195730608 195730559 7.140000e-05 60.2
18 TraesCS1D01G231500 chr2A 83.824 544 68 5 1 524 2741854 2742397 3.550000e-137 499.0
19 TraesCS1D01G231500 chr2A 88.852 305 34 0 5129 5433 621265426 621265122 6.240000e-100 375.0
20 TraesCS1D01G231500 chr2A 94.656 131 7 0 4762 4892 621268687 621268557 3.120000e-48 204.0
21 TraesCS1D01G231500 chr2A 89.041 73 6 2 1895 1967 719720524 719720594 9.110000e-14 89.8
22 TraesCS1D01G231500 chr2D 81.718 547 73 14 1 524 572048289 572048831 1.310000e-116 431.0
23 TraesCS1D01G231500 chr2D 81.262 539 78 13 1 518 534163176 534162640 1.320000e-111 414.0
24 TraesCS1D01G231500 chr2D 88.525 305 35 0 5129 5433 478118477 478118173 2.900000e-98 370.0
25 TraesCS1D01G231500 chr2D 78.928 541 84 15 1 512 645666262 645665723 2.280000e-89 340.0
26 TraesCS1D01G231500 chr2D 94.853 136 7 0 4757 4892 478119089 478118954 5.180000e-51 213.0
27 TraesCS1D01G231500 chr2D 85.135 74 9 2 1895 1966 468866618 468866545 2.550000e-09 75.0
28 TraesCS1D01G231500 chr2D 97.674 43 0 1 3792 3833 381801156 381801198 9.170000e-09 73.1
29 TraesCS1D01G231500 chr5D 80.996 542 85 7 1 524 438400838 438401379 1.320000e-111 414.0
30 TraesCS1D01G231500 chr7A 81.101 545 76 14 2 525 729559128 729559666 1.710000e-110 411.0
31 TraesCS1D01G231500 chr7A 80.804 547 81 11 1 524 510901151 510900606 2.210000e-109 407.0
32 TraesCS1D01G231500 chr7A 80.342 117 19 3 2953 3066 215185124 215185239 1.180000e-12 86.1
33 TraesCS1D01G231500 chr7A 87.500 56 6 1 1910 1965 634393434 634393380 5.520000e-06 63.9
34 TraesCS1D01G231500 chr4A 81.170 547 71 12 1 527 578106629 578106095 1.710000e-110 411.0
35 TraesCS1D01G231500 chr4A 92.857 70 5 0 1896 1965 683423534 683423465 1.170000e-17 102.0
36 TraesCS1D01G231500 chr4A 97.959 49 0 1 3788 3835 637225190 637225142 4.240000e-12 84.2
37 TraesCS1D01G231500 chr4A 90.323 62 6 0 1895 1956 683424709 683424648 1.520000e-11 82.4
38 TraesCS1D01G231500 chr4A 94.231 52 2 1 3785 3835 30142446 30142395 1.970000e-10 78.7
39 TraesCS1D01G231500 chr2B 81.132 530 83 12 1 524 226521095 226520577 6.150000e-110 409.0
40 TraesCS1D01G231500 chr2B 88.525 305 35 0 5129 5433 560458751 560458447 2.900000e-98 370.0
41 TraesCS1D01G231500 chr2B 79.614 363 52 16 4540 4892 560459606 560459256 2.380000e-59 241.0
42 TraesCS1D01G231500 chr3A 80.556 540 83 11 1 519 576202323 576201785 4.790000e-106 396.0
43 TraesCS1D01G231500 chr3A 83.410 434 52 7 1 416 711256722 711257153 1.040000e-102 385.0
44 TraesCS1D01G231500 chr3A 92.857 42 3 0 3025 3066 147793424 147793465 1.990000e-05 62.1
45 TraesCS1D01G231500 chr5A 80.036 551 78 18 1 521 631972017 631971469 4.830000e-101 379.0
46 TraesCS1D01G231500 chr5A 94.444 54 1 2 3788 3839 350440015 350439962 1.520000e-11 82.4
47 TraesCS1D01G231500 chr5A 84.146 82 8 4 2988 3065 599452206 599452286 2.550000e-09 75.0
48 TraesCS1D01G231500 chr5A 87.037 54 6 1 1887 1940 418728806 418728754 7.140000e-05 60.2
49 TraesCS1D01G231500 chr6B 79.742 543 91 7 1 524 439524709 439524167 6.240000e-100 375.0
50 TraesCS1D01G231500 chr5B 79.742 543 90 9 1 524 2811634 2812175 6.240000e-100 375.0
51 TraesCS1D01G231500 chr5B 82.667 150 18 7 2926 3069 382897185 382897332 6.940000e-25 126.0
52 TraesCS1D01G231500 chr5B 94.444 54 1 2 3789 3840 444645300 444645247 1.520000e-11 82.4
53 TraesCS1D01G231500 chr5B 91.525 59 1 3 3789 3846 419846368 419846423 1.970000e-10 78.7
54 TraesCS1D01G231500 chr3D 83.252 412 49 6 5 397 379410315 379409905 1.750000e-95 361.0
55 TraesCS1D01G231500 chr3D 82.313 147 19 7 2926 3065 19326857 19326711 3.230000e-23 121.0
56 TraesCS1D01G231500 chr3D 94.444 54 1 2 3788 3839 400336915 400336862 1.520000e-11 82.4
57 TraesCS1D01G231500 chr6A 82.181 376 43 9 1 355 597317638 597317266 1.070000e-77 302.0
58 TraesCS1D01G231500 chr6A 84.667 150 17 6 2925 3069 106983826 106983974 1.920000e-30 145.0
59 TraesCS1D01G231500 chr6A 96.154 52 1 1 3789 3839 386895151 386895100 4.240000e-12 84.2
60 TraesCS1D01G231500 chr6A 100.000 32 0 0 1935 1966 35634989 35635020 7.140000e-05 60.2
61 TraesCS1D01G231500 chr4B 91.667 72 5 1 1895 1965 667623469 667623398 1.510000e-16 99.0
62 TraesCS1D01G231500 chr7B 77.852 149 18 12 2923 3065 166988537 166988676 1.970000e-10 78.7
63 TraesCS1D01G231500 chr6D 94.737 38 0 1 1935 1970 353105789 353105752 2.570000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G231500 chr1D 319926552 319933144 6592 False 5801.000000 5934 100.000000 1 6593 2 chr1D.!!$F1 6592
1 TraesCS1D01G231500 chr1A 403026000 403031676 5676 True 1099.800000 2985 90.111600 643 6593 5 chr1A.!!$R1 5950
2 TraesCS1D01G231500 chr1B 432815758 432821934 6176 False 977.428571 2907 88.557429 636 6557 7 chr1B.!!$F1 5921
3 TraesCS1D01G231500 chr2A 2741854 2742397 543 False 499.000000 499 83.824000 1 524 1 chr2A.!!$F1 523
4 TraesCS1D01G231500 chr2A 621265122 621268687 3565 True 289.500000 375 91.754000 4762 5433 2 chr2A.!!$R1 671
5 TraesCS1D01G231500 chr2D 572048289 572048831 542 False 431.000000 431 81.718000 1 524 1 chr2D.!!$F2 523
6 TraesCS1D01G231500 chr2D 534162640 534163176 536 True 414.000000 414 81.262000 1 518 1 chr2D.!!$R2 517
7 TraesCS1D01G231500 chr2D 645665723 645666262 539 True 340.000000 340 78.928000 1 512 1 chr2D.!!$R3 511
8 TraesCS1D01G231500 chr2D 478118173 478119089 916 True 291.500000 370 91.689000 4757 5433 2 chr2D.!!$R4 676
9 TraesCS1D01G231500 chr5D 438400838 438401379 541 False 414.000000 414 80.996000 1 524 1 chr5D.!!$F1 523
10 TraesCS1D01G231500 chr7A 729559128 729559666 538 False 411.000000 411 81.101000 2 525 1 chr7A.!!$F2 523
11 TraesCS1D01G231500 chr7A 510900606 510901151 545 True 407.000000 407 80.804000 1 524 1 chr7A.!!$R1 523
12 TraesCS1D01G231500 chr4A 578106095 578106629 534 True 411.000000 411 81.170000 1 527 1 chr4A.!!$R2 526
13 TraesCS1D01G231500 chr2B 226520577 226521095 518 True 409.000000 409 81.132000 1 524 1 chr2B.!!$R1 523
14 TraesCS1D01G231500 chr2B 560458447 560459606 1159 True 305.500000 370 84.069500 4540 5433 2 chr2B.!!$R2 893
15 TraesCS1D01G231500 chr3A 576201785 576202323 538 True 396.000000 396 80.556000 1 519 1 chr3A.!!$R1 518
16 TraesCS1D01G231500 chr5A 631971469 631972017 548 True 379.000000 379 80.036000 1 521 1 chr5A.!!$R3 520
17 TraesCS1D01G231500 chr6B 439524167 439524709 542 True 375.000000 375 79.742000 1 524 1 chr6B.!!$R1 523
18 TraesCS1D01G231500 chr5B 2811634 2812175 541 False 375.000000 375 79.742000 1 524 1 chr5B.!!$F1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
864 946 0.108424 CTGACCAAAGCTCCTCCGAG 60.108 60.0 0.00 0.00 39.33 4.63 F
1769 2009 0.106669 ATGCATGCATCAGCCTCAGT 60.107 50.0 27.46 1.89 41.13 3.41 F
1910 2159 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.0 0.00 0.00 0.00 4.00 F
1996 2245 0.679505 AAAGAGCGCTGTGGACTACA 59.320 50.0 18.48 0.00 37.78 2.74 F
3453 3922 1.014352 GCGTATAGGCTGTTTGGTGG 58.986 55.0 10.14 0.00 0.00 4.61 F
4214 4795 0.179065 GCTACCATGGTTCCCGGTAC 60.179 60.0 25.38 0.00 34.12 3.34 F
4431 5028 0.035439 ATCGTTGCTTGGGTTCCGAT 60.035 50.0 0.00 0.00 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1949 2198 0.042131 AGGTTACTCCATCCGTCCCA 59.958 55.0 0.00 0.0 39.02 4.37 R
3429 3898 0.107848 AAACAGCCTATACGCCGCTT 60.108 50.0 0.00 0.0 0.00 4.68 R
3450 3919 0.606604 TAACCTTCCGAGTCAGCCAC 59.393 55.0 0.00 0.0 0.00 5.01 R
3767 4244 0.678048 GCACCCTCGAAATGGAGCTT 60.678 55.0 9.47 0.0 32.57 3.74 R
4412 5009 0.035439 ATCGGAACCCAAGCAACGAT 60.035 50.0 0.00 0.0 36.38 3.73 R
5376 9002 0.036952 CCAGCTCCACATTGTCGTCT 60.037 55.0 0.00 0.0 0.00 4.18 R
5882 9514 0.810823 TTTGTCGTCGCCTTTTCCGT 60.811 50.0 0.00 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 119 2.351544 GGAAAGTCGTCGTGCTAAGACT 60.352 50.000 0.00 0.00 44.81 3.24
213 247 3.978373 CGAACGAAGACCGGATCG 58.022 61.111 21.32 21.32 43.93 3.69
216 250 1.546834 GAACGAAGACCGGATCGAAG 58.453 55.000 26.86 10.10 43.93 3.79
220 254 0.528684 GAAGACCGGATCGAAGCAGG 60.529 60.000 9.46 6.34 0.00 4.85
223 257 1.668101 GACCGGATCGAAGCAGGTCT 61.668 60.000 23.79 3.23 45.68 3.85
249 284 0.249911 GATTAGCACCGGCCGAATCT 60.250 55.000 30.73 21.17 42.56 2.40
261 310 0.386605 CCGAATCTCGCGAGATCCTG 60.387 60.000 42.41 33.14 46.75 3.86
284 333 2.027751 GCCCTCCGACGATGCTAC 59.972 66.667 0.00 0.00 0.00 3.58
285 334 2.331805 CCCTCCGACGATGCTACG 59.668 66.667 0.00 2.03 39.31 3.51
293 342 1.683790 GACGATGCTACGCACACCAC 61.684 60.000 0.00 0.00 43.04 4.16
334 386 9.886132 AACGTGAAAGACATTATTCCTACTAAT 57.114 29.630 0.00 0.00 0.00 1.73
435 491 1.071385 GATCATGATCCTCCGCACCTT 59.929 52.381 22.91 0.00 31.76 3.50
448 504 0.833287 GCACCTTCATGGCCTAGAGA 59.167 55.000 3.32 0.00 40.22 3.10
455 511 1.043816 CATGGCCTAGAGACCATCGT 58.956 55.000 3.32 0.00 44.97 3.73
456 512 1.414181 CATGGCCTAGAGACCATCGTT 59.586 52.381 3.32 0.00 44.97 3.85
458 515 0.824759 GGCCTAGAGACCATCGTTGT 59.175 55.000 0.00 0.00 0.00 3.32
465 527 1.602323 GACCATCGTTGTTGGGGCA 60.602 57.895 0.00 0.00 38.64 5.36
513 579 4.140536 AGAAGAGCTTTTCTTGTGAAGGG 58.859 43.478 13.53 0.00 46.12 3.95
527 593 3.397618 TGTGAAGGGGAAAAGAGATGGAA 59.602 43.478 0.00 0.00 0.00 3.53
528 594 4.013050 GTGAAGGGGAAAAGAGATGGAAG 58.987 47.826 0.00 0.00 0.00 3.46
529 595 3.916349 TGAAGGGGAAAAGAGATGGAAGA 59.084 43.478 0.00 0.00 0.00 2.87
530 596 4.353788 TGAAGGGGAAAAGAGATGGAAGAA 59.646 41.667 0.00 0.00 0.00 2.52
531 597 5.015603 TGAAGGGGAAAAGAGATGGAAGAAT 59.984 40.000 0.00 0.00 0.00 2.40
532 598 6.217487 TGAAGGGGAAAAGAGATGGAAGAATA 59.783 38.462 0.00 0.00 0.00 1.75
533 599 6.658555 AGGGGAAAAGAGATGGAAGAATAA 57.341 37.500 0.00 0.00 0.00 1.40
534 600 7.044496 AGGGGAAAAGAGATGGAAGAATAAA 57.956 36.000 0.00 0.00 0.00 1.40
535 601 7.656354 AGGGGAAAAGAGATGGAAGAATAAAT 58.344 34.615 0.00 0.00 0.00 1.40
536 602 7.562821 AGGGGAAAAGAGATGGAAGAATAAATG 59.437 37.037 0.00 0.00 0.00 2.32
537 603 7.343057 GGGGAAAAGAGATGGAAGAATAAATGT 59.657 37.037 0.00 0.00 0.00 2.71
538 604 9.408648 GGGAAAAGAGATGGAAGAATAAATGTA 57.591 33.333 0.00 0.00 0.00 2.29
544 610 9.995003 AGAGATGGAAGAATAAATGTATCAGTC 57.005 33.333 0.00 0.00 0.00 3.51
545 611 9.213799 GAGATGGAAGAATAAATGTATCAGTCC 57.786 37.037 0.00 0.00 0.00 3.85
546 612 8.717717 AGATGGAAGAATAAATGTATCAGTCCA 58.282 33.333 4.62 4.62 35.98 4.02
547 613 9.342308 GATGGAAGAATAAATGTATCAGTCCAA 57.658 33.333 5.80 0.00 35.23 3.53
548 614 8.506168 TGGAAGAATAAATGTATCAGTCCAAC 57.494 34.615 0.00 0.00 0.00 3.77
549 615 8.106462 TGGAAGAATAAATGTATCAGTCCAACA 58.894 33.333 0.00 0.00 0.00 3.33
550 616 8.398665 GGAAGAATAAATGTATCAGTCCAACAC 58.601 37.037 0.00 0.00 0.00 3.32
551 617 7.865706 AGAATAAATGTATCAGTCCAACACC 57.134 36.000 0.00 0.00 0.00 4.16
552 618 6.828785 AGAATAAATGTATCAGTCCAACACCC 59.171 38.462 0.00 0.00 0.00 4.61
553 619 4.380843 AAATGTATCAGTCCAACACCCA 57.619 40.909 0.00 0.00 0.00 4.51
554 620 4.591321 AATGTATCAGTCCAACACCCAT 57.409 40.909 0.00 0.00 0.00 4.00
555 621 4.591321 ATGTATCAGTCCAACACCCATT 57.409 40.909 0.00 0.00 0.00 3.16
556 622 4.380843 TGTATCAGTCCAACACCCATTT 57.619 40.909 0.00 0.00 0.00 2.32
557 623 4.078537 TGTATCAGTCCAACACCCATTTG 58.921 43.478 0.00 0.00 0.00 2.32
558 624 3.524095 ATCAGTCCAACACCCATTTGA 57.476 42.857 0.00 0.00 0.00 2.69
559 625 2.582052 TCAGTCCAACACCCATTTGAC 58.418 47.619 0.00 0.00 0.00 3.18
560 626 1.613437 CAGTCCAACACCCATTTGACC 59.387 52.381 0.00 0.00 0.00 4.02
561 627 1.216678 AGTCCAACACCCATTTGACCA 59.783 47.619 0.00 0.00 0.00 4.02
562 628 2.158325 AGTCCAACACCCATTTGACCAT 60.158 45.455 0.00 0.00 0.00 3.55
563 629 2.029110 GTCCAACACCCATTTGACCATG 60.029 50.000 0.00 0.00 0.00 3.66
564 630 2.158400 TCCAACACCCATTTGACCATGA 60.158 45.455 0.00 0.00 0.00 3.07
565 631 2.231964 CCAACACCCATTTGACCATGAG 59.768 50.000 0.00 0.00 0.00 2.90
566 632 1.549203 ACACCCATTTGACCATGAGC 58.451 50.000 0.00 0.00 0.00 4.26
567 633 1.203038 ACACCCATTTGACCATGAGCA 60.203 47.619 0.00 0.00 0.00 4.26
568 634 1.894466 CACCCATTTGACCATGAGCAA 59.106 47.619 0.00 0.00 0.00 3.91
569 635 2.498481 CACCCATTTGACCATGAGCAAT 59.502 45.455 0.00 0.00 0.00 3.56
570 636 3.700539 CACCCATTTGACCATGAGCAATA 59.299 43.478 0.00 0.00 0.00 1.90
571 637 4.160065 CACCCATTTGACCATGAGCAATAA 59.840 41.667 0.00 0.00 0.00 1.40
572 638 4.776837 ACCCATTTGACCATGAGCAATAAA 59.223 37.500 0.00 0.00 0.00 1.40
573 639 5.426185 ACCCATTTGACCATGAGCAATAAAT 59.574 36.000 0.00 0.00 0.00 1.40
574 640 6.610830 ACCCATTTGACCATGAGCAATAAATA 59.389 34.615 0.00 0.00 0.00 1.40
575 641 7.125507 ACCCATTTGACCATGAGCAATAAATAA 59.874 33.333 0.00 0.00 0.00 1.40
576 642 7.986320 CCCATTTGACCATGAGCAATAAATAAA 59.014 33.333 0.00 0.00 0.00 1.40
577 643 9.550406 CCATTTGACCATGAGCAATAAATAAAT 57.450 29.630 0.00 0.00 0.00 1.40
604 670 9.472361 AAATAAATACTATAGCATCGTTCACGT 57.528 29.630 0.00 0.00 40.80 4.49
605 671 9.472361 AATAAATACTATAGCATCGTTCACGTT 57.528 29.630 0.00 0.00 40.80 3.99
606 672 7.766219 AAATACTATAGCATCGTTCACGTTT 57.234 32.000 0.00 0.00 40.80 3.60
607 673 7.766219 AATACTATAGCATCGTTCACGTTTT 57.234 32.000 0.00 0.00 40.80 2.43
608 674 7.766219 ATACTATAGCATCGTTCACGTTTTT 57.234 32.000 0.00 0.00 40.80 1.94
625 691 3.834489 TTTTTGCACCACAACATCCAT 57.166 38.095 0.00 0.00 38.23 3.41
626 692 3.834489 TTTTGCACCACAACATCCATT 57.166 38.095 0.00 0.00 38.23 3.16
627 693 3.834489 TTTGCACCACAACATCCATTT 57.166 38.095 0.00 0.00 38.23 2.32
628 694 4.944619 TTTGCACCACAACATCCATTTA 57.055 36.364 0.00 0.00 38.23 1.40
629 695 4.944619 TTGCACCACAACATCCATTTAA 57.055 36.364 0.00 0.00 31.73 1.52
630 696 5.480642 TTGCACCACAACATCCATTTAAT 57.519 34.783 0.00 0.00 31.73 1.40
631 697 5.480642 TGCACCACAACATCCATTTAATT 57.519 34.783 0.00 0.00 0.00 1.40
632 698 6.596309 TGCACCACAACATCCATTTAATTA 57.404 33.333 0.00 0.00 0.00 1.40
633 699 6.997655 TGCACCACAACATCCATTTAATTAA 58.002 32.000 0.00 0.00 0.00 1.40
634 700 6.870965 TGCACCACAACATCCATTTAATTAAC 59.129 34.615 0.00 0.00 0.00 2.01
677 744 1.347707 GATCTTGACCAGTCCACCACA 59.652 52.381 0.00 0.00 0.00 4.17
678 745 1.208706 TCTTGACCAGTCCACCACAA 58.791 50.000 0.00 0.00 0.00 3.33
741 808 0.176680 CAGAGAATCCGGGTCACCAG 59.823 60.000 0.00 0.00 36.13 4.00
835 917 1.827789 CTCCCTCTCCTCCTCGCAG 60.828 68.421 0.00 0.00 0.00 5.18
864 946 0.108424 CTGACCAAAGCTCCTCCGAG 60.108 60.000 0.00 0.00 39.33 4.63
887 984 1.584724 TTTCCCCTCTCTGTCCATCC 58.415 55.000 0.00 0.00 0.00 3.51
917 1014 3.859061 TCTTCGTGATCTCTAGCCCTA 57.141 47.619 0.00 0.00 0.00 3.53
978 1082 1.401905 GCTTTGATCCCCGCTTAGTTG 59.598 52.381 0.00 0.00 0.00 3.16
994 1098 0.589729 GTTGTTGCGCACACACAGAG 60.590 55.000 11.12 0.00 33.98 3.35
1046 1172 1.001487 CAAACGCAACTCCATCTGCAA 60.001 47.619 0.00 0.00 38.52 4.08
1088 1214 2.911509 TGGGTTGCAAGCACGCAT 60.912 55.556 28.22 0.00 42.62 4.73
1089 1215 2.126346 GGGTTGCAAGCACGCATC 60.126 61.111 28.22 7.70 42.62 3.91
1092 1218 3.356267 TTGCAAGCACGCATCGCT 61.356 55.556 0.00 0.00 42.62 4.93
1154 1313 4.517952 TCATGATGCGTTTGATGGTTTT 57.482 36.364 0.00 0.00 0.00 2.43
1322 1517 0.109179 TGCCTAAGCTTTGCGCATTG 60.109 50.000 12.75 8.52 42.61 2.82
1324 1519 0.803380 CCTAAGCTTTGCGCATTGCC 60.803 55.000 24.82 9.90 45.60 4.52
1388 1588 7.220740 TCGATCATACTACATTGACTCTCTCT 58.779 38.462 0.00 0.00 0.00 3.10
1389 1589 7.386573 TCGATCATACTACATTGACTCTCTCTC 59.613 40.741 0.00 0.00 0.00 3.20
1483 1692 6.630444 ACTAATGCTGCTTAATCTTCATGG 57.370 37.500 0.00 0.00 0.00 3.66
1484 1693 4.317671 AATGCTGCTTAATCTTCATGGC 57.682 40.909 0.00 0.00 0.00 4.40
1519 1731 5.622770 TCTCCGTTTATTTCCTCTTTTGC 57.377 39.130 0.00 0.00 0.00 3.68
1528 1740 4.670896 TTTCCTCTTTTGCTTTTGGAGG 57.329 40.909 0.00 0.00 43.35 4.30
1548 1760 7.287061 TGGAGGTAGTTTCAGAGAAAATTCAA 58.713 34.615 0.00 0.00 0.00 2.69
1549 1761 7.777910 TGGAGGTAGTTTCAGAGAAAATTCAAA 59.222 33.333 0.00 0.00 0.00 2.69
1550 1762 8.630037 GGAGGTAGTTTCAGAGAAAATTCAAAA 58.370 33.333 0.00 0.00 0.00 2.44
1605 1832 9.319143 CCCTTCTACTACAAGATAATGTTTCAG 57.681 37.037 0.00 0.00 34.75 3.02
1631 1858 1.214373 TTTTCGGTGTGCGGTCGTAC 61.214 55.000 4.72 4.72 0.00 3.67
1737 1970 5.308825 AGGCTTCATATATGTTAGTGCCAC 58.691 41.667 23.99 0.00 40.18 5.01
1758 1998 3.390311 ACTGATCCTTCTAGATGCATGCA 59.610 43.478 25.04 25.04 0.00 3.96
1769 2009 0.106669 ATGCATGCATCAGCCTCAGT 60.107 50.000 27.46 1.89 41.13 3.41
1787 2036 5.187967 CCTCAGTCTGGTTGTTAATAGGAGT 59.812 44.000 0.00 0.00 0.00 3.85
1881 2130 5.762218 CCTAATTTGATCATGTCCTCCAGTC 59.238 44.000 0.00 0.00 0.00 3.51
1893 2142 4.593206 TGTCCTCCAGTCAGATTTAACAGT 59.407 41.667 0.00 0.00 0.00 3.55
1906 2155 4.525912 TTTAACAGTTACTCCCTCCGTC 57.474 45.455 0.00 0.00 0.00 4.79
1907 2156 1.264295 AACAGTTACTCCCTCCGTCC 58.736 55.000 0.00 0.00 0.00 4.79
1908 2157 0.614134 ACAGTTACTCCCTCCGTCCC 60.614 60.000 0.00 0.00 0.00 4.46
1909 2158 0.613853 CAGTTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
1910 2159 0.338814 AGTTACTCCCTCCGTCCCAT 59.661 55.000 0.00 0.00 0.00 4.00
1916 2165 3.173965 ACTCCCTCCGTCCCATAATATG 58.826 50.000 0.00 0.00 0.00 1.78
1920 2169 3.195825 CCCTCCGTCCCATAATATGAGAC 59.804 52.174 5.01 5.01 35.00 3.36
1922 2171 3.832490 CTCCGTCCCATAATATGAGACCA 59.168 47.826 8.93 0.00 34.89 4.02
1926 2175 6.003950 CCGTCCCATAATATGAGACCATTTT 58.996 40.000 8.93 0.00 34.89 1.82
1927 2176 6.490040 CCGTCCCATAATATGAGACCATTTTT 59.510 38.462 8.93 0.00 34.89 1.94
1928 2177 7.362662 CGTCCCATAATATGAGACCATTTTTG 58.637 38.462 8.93 0.00 34.89 2.44
1929 2178 7.228507 CGTCCCATAATATGAGACCATTTTTGA 59.771 37.037 8.93 0.00 34.89 2.69
1932 2181 8.137437 CCCATAATATGAGACCATTTTTGACAC 58.863 37.037 1.10 0.00 34.31 3.67
1937 2186 8.862325 ATATGAGACCATTTTTGACACTAACA 57.138 30.769 0.00 0.00 34.31 2.41
1938 2187 6.371809 TGAGACCATTTTTGACACTAACAC 57.628 37.500 0.00 0.00 0.00 3.32
1939 2188 6.119536 TGAGACCATTTTTGACACTAACACT 58.880 36.000 0.00 0.00 0.00 3.55
1941 2190 6.357367 AGACCATTTTTGACACTAACACTCT 58.643 36.000 0.00 0.00 0.00 3.24
1942 2191 6.828785 AGACCATTTTTGACACTAACACTCTT 59.171 34.615 0.00 0.00 0.00 2.85
1943 2192 7.990886 AGACCATTTTTGACACTAACACTCTTA 59.009 33.333 0.00 0.00 0.00 2.10
1944 2193 8.691661 ACCATTTTTGACACTAACACTCTTAT 57.308 30.769 0.00 0.00 0.00 1.73
1945 2194 9.787435 ACCATTTTTGACACTAACACTCTTATA 57.213 29.630 0.00 0.00 0.00 0.98
1953 2202 9.429109 TGACACTAACACTCTTATATTATGGGA 57.571 33.333 0.00 0.00 0.00 4.37
1954 2203 9.694137 GACACTAACACTCTTATATTATGGGAC 57.306 37.037 0.00 0.00 0.00 4.46
1955 2204 8.358148 ACACTAACACTCTTATATTATGGGACG 58.642 37.037 0.00 0.00 0.00 4.79
1956 2205 7.813148 CACTAACACTCTTATATTATGGGACGG 59.187 40.741 0.00 0.00 0.00 4.79
1957 2206 6.989155 AACACTCTTATATTATGGGACGGA 57.011 37.500 0.00 0.00 0.00 4.69
1958 2207 7.554959 AACACTCTTATATTATGGGACGGAT 57.445 36.000 0.00 0.00 0.00 4.18
1959 2208 6.936279 ACACTCTTATATTATGGGACGGATG 58.064 40.000 0.00 0.00 0.00 3.51
1960 2209 6.070767 ACACTCTTATATTATGGGACGGATGG 60.071 42.308 0.00 0.00 0.00 3.51
1961 2210 6.154534 CACTCTTATATTATGGGACGGATGGA 59.845 42.308 0.00 0.00 0.00 3.41
1962 2211 6.381420 ACTCTTATATTATGGGACGGATGGAG 59.619 42.308 0.00 0.00 0.00 3.86
1963 2212 6.261435 TCTTATATTATGGGACGGATGGAGT 58.739 40.000 0.00 0.00 0.00 3.85
1964 2213 7.415908 TCTTATATTATGGGACGGATGGAGTA 58.584 38.462 0.00 0.00 0.00 2.59
1982 2231 9.535878 GATGGAGTAACCTTAACATAGAAAGAG 57.464 37.037 0.00 0.00 39.86 2.85
1984 2233 6.476053 GGAGTAACCTTAACATAGAAAGAGCG 59.524 42.308 0.00 0.00 35.41 5.03
1990 2239 2.015736 ACATAGAAAGAGCGCTGTGG 57.984 50.000 18.48 0.00 0.00 4.17
1991 2240 1.550524 ACATAGAAAGAGCGCTGTGGA 59.449 47.619 18.48 0.00 0.00 4.02
1992 2241 1.929836 CATAGAAAGAGCGCTGTGGAC 59.070 52.381 18.48 6.19 0.00 4.02
1993 2242 1.257743 TAGAAAGAGCGCTGTGGACT 58.742 50.000 18.48 13.85 0.00 3.85
1994 2243 1.257743 AGAAAGAGCGCTGTGGACTA 58.742 50.000 18.48 0.00 0.00 2.59
1995 2244 1.067495 AGAAAGAGCGCTGTGGACTAC 60.067 52.381 18.48 0.00 0.00 2.73
1996 2245 0.679505 AAAGAGCGCTGTGGACTACA 59.320 50.000 18.48 0.00 37.78 2.74
2012 2261 7.108841 TGGACTACACAGTTTCATAGTATCC 57.891 40.000 0.00 0.00 34.21 2.59
2026 2275 7.361457 TCATAGTATCCCAAGTTCTTTCGAT 57.639 36.000 0.00 0.00 0.00 3.59
2028 2277 5.422214 AGTATCCCAAGTTCTTTCGATGT 57.578 39.130 0.00 0.00 0.00 3.06
2040 2297 3.367932 TCTTTCGATGTTTGCTGATCGTC 59.632 43.478 0.00 0.00 41.75 4.20
2063 2320 9.040939 CGTCAAACAATTTTAAATCTTTCCCTT 57.959 29.630 0.00 0.00 0.00 3.95
2077 2344 5.243207 TCTTTCCCTTTAGTGGATCGAAAC 58.757 41.667 0.00 0.00 0.00 2.78
2078 2345 4.627284 TTCCCTTTAGTGGATCGAAACA 57.373 40.909 0.00 0.00 0.00 2.83
2108 2375 4.663166 TGCGTTTTCTCGAAAAACATCAA 58.337 34.783 23.27 11.19 41.37 2.57
2150 2417 7.613411 AGGGAAAGATGGTAGAAGAGAATTTTG 59.387 37.037 0.00 0.00 0.00 2.44
2156 2423 9.793259 AGATGGTAGAAGAGAATTTTGTGTAAA 57.207 29.630 0.00 0.00 0.00 2.01
2159 2426 8.836413 TGGTAGAAGAGAATTTTGTGTAAACAG 58.164 33.333 0.00 0.00 0.00 3.16
2171 2438 4.069304 TGTGTAAACAGATTAGTGGCCAC 58.931 43.478 29.22 29.22 0.00 5.01
2224 2491 1.602311 GTTGCAGATGCTGATAGGGG 58.398 55.000 6.35 0.00 42.66 4.79
2253 2520 6.381420 ACAACTACTTGCTGGTGATAGATACT 59.619 38.462 0.00 0.00 0.00 2.12
2275 2542 4.717877 TGTGACTTCATGAATTGGACAGT 58.282 39.130 8.96 0.62 0.00 3.55
2280 2547 5.762045 ACTTCATGAATTGGACAGTTTTCG 58.238 37.500 8.96 0.00 0.00 3.46
2282 2549 4.141287 TCATGAATTGGACAGTTTTCGGT 58.859 39.130 0.00 0.00 0.00 4.69
2309 2576 7.466193 CAGATGCTGCTATATATACTTGCTG 57.534 40.000 0.00 5.08 0.00 4.41
2310 2577 6.479331 CAGATGCTGCTATATATACTTGCTGG 59.521 42.308 0.00 3.39 0.00 4.85
2311 2578 5.745312 TGCTGCTATATATACTTGCTGGT 57.255 39.130 0.00 0.00 0.00 4.00
2351 2618 9.720769 ATTCGATCCAGTATATCCGTAATTTTT 57.279 29.630 0.00 0.00 0.00 1.94
2385 2654 3.627123 CGAGGGTACATGCATGAAAATCA 59.373 43.478 32.75 7.61 0.00 2.57
2397 2666 6.522946 TGCATGAAAATCATCTTGAAAACCA 58.477 32.000 0.00 0.00 34.28 3.67
2435 2704 3.624861 GGAGTTGACATATGGCAGACAAG 59.375 47.826 11.95 0.00 32.66 3.16
2436 2705 4.507710 GAGTTGACATATGGCAGACAAGA 58.492 43.478 11.95 0.00 32.66 3.02
2438 2707 4.697352 AGTTGACATATGGCAGACAAGAAC 59.303 41.667 11.95 5.26 32.66 3.01
2439 2708 4.558226 TGACATATGGCAGACAAGAACT 57.442 40.909 7.32 0.00 0.00 3.01
2440 2709 4.256110 TGACATATGGCAGACAAGAACTG 58.744 43.478 7.32 0.00 38.27 3.16
2448 2723 2.802816 GCAGACAAGAACTGGTACTGTG 59.197 50.000 0.00 0.00 41.30 3.66
2449 2724 2.802816 CAGACAAGAACTGGTACTGTGC 59.197 50.000 0.00 0.00 41.30 4.57
2460 2735 3.758554 CTGGTACTGTGCCTTTGCTAATT 59.241 43.478 15.99 0.00 38.71 1.40
2461 2736 4.912586 TGGTACTGTGCCTTTGCTAATTA 58.087 39.130 15.99 0.00 38.71 1.40
2462 2737 5.317808 TGGTACTGTGCCTTTGCTAATTAA 58.682 37.500 15.99 0.00 38.71 1.40
2463 2738 5.949354 TGGTACTGTGCCTTTGCTAATTAAT 59.051 36.000 15.99 0.00 38.71 1.40
2464 2739 7.113437 TGGTACTGTGCCTTTGCTAATTAATA 58.887 34.615 15.99 0.00 38.71 0.98
2465 2740 7.066525 TGGTACTGTGCCTTTGCTAATTAATAC 59.933 37.037 15.99 0.00 38.71 1.89
2480 2755 7.039644 GCTAATTAATACTGGTCCTCTGCTCTA 60.040 40.741 0.00 0.00 0.00 2.43
2515 2790 3.708451 TGCTCATTGTAGGGTAGTCTCA 58.292 45.455 0.00 0.00 0.00 3.27
2542 2817 6.381498 TCAGATCAATTACTTACCACCCAA 57.619 37.500 0.00 0.00 0.00 4.12
2549 2824 8.485578 TCAATTACTTACCACCCAAAAAGAAT 57.514 30.769 0.00 0.00 0.00 2.40
2552 2828 3.824443 ACTTACCACCCAAAAAGAATCGG 59.176 43.478 0.00 0.00 0.00 4.18
2556 2832 2.097466 CCACCCAAAAAGAATCGGATCG 59.903 50.000 0.00 0.00 0.00 3.69
2557 2833 2.747446 CACCCAAAAAGAATCGGATCGT 59.253 45.455 0.00 0.00 0.00 3.73
2581 2861 9.861138 CGTCATTTATTCTCTCATTTGATCTTC 57.139 33.333 0.00 0.00 0.00 2.87
2589 2869 5.698089 TCTCTCATTTGATCTTCACACACAC 59.302 40.000 0.00 0.00 0.00 3.82
2591 2871 5.237127 TCTCATTTGATCTTCACACACACAC 59.763 40.000 0.00 0.00 0.00 3.82
2593 2873 4.614555 TTTGATCTTCACACACACACAC 57.385 40.909 0.00 0.00 0.00 3.82
2595 2875 2.935849 TGATCTTCACACACACACACAC 59.064 45.455 0.00 0.00 0.00 3.82
2596 2876 2.464157 TCTTCACACACACACACACA 57.536 45.000 0.00 0.00 0.00 3.72
2597 2877 2.073056 TCTTCACACACACACACACAC 58.927 47.619 0.00 0.00 0.00 3.82
2599 2879 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2601 2881 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
2603 2883 3.126000 CACACACACACACACACACATAA 59.874 43.478 0.00 0.00 0.00 1.90
2604 2884 3.944650 ACACACACACACACACACATAAT 59.055 39.130 0.00 0.00 0.00 1.28
2605 2885 4.035091 ACACACACACACACACACATAATC 59.965 41.667 0.00 0.00 0.00 1.75
2607 2887 4.273235 ACACACACACACACACATAATCTG 59.727 41.667 0.00 0.00 0.00 2.90
2608 2888 3.250762 ACACACACACACACATAATCTGC 59.749 43.478 0.00 0.00 0.00 4.26
2609 2889 3.499537 CACACACACACACATAATCTGCT 59.500 43.478 0.00 0.00 0.00 4.24
2612 2892 2.086869 ACACACACATAATCTGCTGGC 58.913 47.619 0.00 0.00 0.00 4.85
2613 2893 2.086094 CACACACATAATCTGCTGGCA 58.914 47.619 0.00 0.00 0.00 4.92
2614 2894 2.686405 CACACACATAATCTGCTGGCAT 59.314 45.455 0.00 0.00 0.00 4.40
2615 2895 2.686405 ACACACATAATCTGCTGGCATG 59.314 45.455 0.00 0.00 0.00 4.06
2616 2896 2.034179 CACACATAATCTGCTGGCATGG 59.966 50.000 0.00 0.00 0.00 3.66
2639 2977 5.405797 GGAAAGCTGCTTTTGATAAAGAGG 58.594 41.667 26.64 0.00 42.78 3.69
2653 2991 6.236409 TGATAAAGAGGGAAGATGATGATGC 58.764 40.000 0.00 0.00 0.00 3.91
2658 2996 1.605710 GGGAAGATGATGATGCCAACG 59.394 52.381 0.00 0.00 0.00 4.10
2680 3019 1.202651 ACTTCTGAAGTTCCACCACGG 60.203 52.381 17.00 0.00 39.04 4.94
2681 3020 1.070134 CTTCTGAAGTTCCACCACGGA 59.930 52.381 9.26 0.00 44.40 4.69
2757 3096 1.332997 GTGATATTGGTGAGCTGCAGC 59.667 52.381 31.53 31.53 45.12 5.25
2849 3200 3.365265 CAAACAGGCCACGGCTCC 61.365 66.667 5.01 0.00 41.60 4.70
2872 3223 1.071814 TTGGGTCTACGGTTGTGCC 59.928 57.895 0.00 0.00 0.00 5.01
2940 3291 5.570589 GCATTGATGAACTTTGCTTCTGTAC 59.429 40.000 0.00 0.00 0.00 2.90
2944 3295 5.822519 TGATGAACTTTGCTTCTGTACACTT 59.177 36.000 0.00 0.00 0.00 3.16
2945 3296 5.734855 TGAACTTTGCTTCTGTACACTTC 57.265 39.130 0.00 0.00 0.00 3.01
2966 3317 9.946165 CACTTCCTAGAAAAGTTTACGAATTTT 57.054 29.630 7.51 0.00 34.79 1.82
2981 3332 8.909708 TTACGAATTTTGATGCAGATTAAAGG 57.090 30.769 0.00 0.00 0.00 3.11
2997 3348 8.630917 CAGATTAAAGGTCGAGATTAGAAGGTA 58.369 37.037 0.00 0.00 0.00 3.08
3010 3362 8.030913 AGATTAGAAGGTACCCGTTCAATAAT 57.969 34.615 8.74 7.94 37.81 1.28
3012 3364 9.201127 GATTAGAAGGTACCCGTTCAATAATAC 57.799 37.037 8.74 0.98 37.81 1.89
3023 3375 9.359653 ACCCGTTCAATAATACTAGTATACTGT 57.640 33.333 15.74 13.07 0.00 3.55
3429 3898 3.558931 ATATTCGAAGTGATGGTGGCA 57.441 42.857 3.35 0.00 0.00 4.92
3433 3902 1.503542 GAAGTGATGGTGGCAAGCG 59.496 57.895 0.00 0.00 0.00 4.68
3450 3919 1.772063 GCGGCGTATAGGCTGTTTGG 61.772 60.000 23.36 6.48 44.22 3.28
3453 3922 1.014352 GCGTATAGGCTGTTTGGTGG 58.986 55.000 10.14 0.00 0.00 4.61
3488 3957 4.886489 GGTTAACTGACCCTCTACGATAGT 59.114 45.833 5.42 0.00 42.95 2.12
3506 3975 7.946655 CGATAGTATTTGGCATAGAGTTTCA 57.053 36.000 0.00 0.00 0.00 2.69
3507 3976 8.539770 CGATAGTATTTGGCATAGAGTTTCAT 57.460 34.615 0.00 0.00 0.00 2.57
3525 3996 5.873179 TTCATTTAAACTAGAAGTGGCCG 57.127 39.130 0.00 0.00 0.00 6.13
3527 3998 2.843401 TTAAACTAGAAGTGGCCGCA 57.157 45.000 20.59 0.00 0.00 5.69
3528 3999 2.088950 TAAACTAGAAGTGGCCGCAC 57.911 50.000 20.59 12.17 0.00 5.34
3588 4059 5.748402 TGTCAGTGAGCATAATGAAGGAAT 58.252 37.500 0.00 0.00 0.00 3.01
3601 4072 3.869272 GGAATGCGGTGCAGAGCG 61.869 66.667 8.55 0.18 43.65 5.03
3621 4092 1.071567 GCAGAAGGCACTACGTCGTC 61.072 60.000 0.00 0.00 38.49 4.20
3633 4104 3.767806 GTCGTCGAACCCCTCCCC 61.768 72.222 0.00 0.00 0.00 4.81
3634 4105 3.988678 TCGTCGAACCCCTCCCCT 61.989 66.667 0.00 0.00 0.00 4.79
3635 4106 3.459063 CGTCGAACCCCTCCCCTC 61.459 72.222 0.00 0.00 0.00 4.30
3636 4107 2.284405 GTCGAACCCCTCCCCTCA 60.284 66.667 0.00 0.00 0.00 3.86
3646 4117 2.525629 TCCCCTCACCGAGCAACA 60.526 61.111 0.00 0.00 0.00 3.33
3679 4150 4.218686 GGCCACACCCACAACCCT 62.219 66.667 0.00 0.00 0.00 4.34
3688 4159 3.397955 ACACCCACAACCCTAGAAGAAAT 59.602 43.478 0.00 0.00 0.00 2.17
3714 4185 1.786937 ACAAAGGCCAAACACCATCA 58.213 45.000 5.01 0.00 0.00 3.07
3732 4203 2.281276 GACAACCGGGTCCCACAC 60.281 66.667 9.12 0.00 0.00 3.82
3755 4232 2.190578 CCCAGCCCCGATTCAGAC 59.809 66.667 0.00 0.00 0.00 3.51
3762 4239 1.333636 CCCCGATTCAGACAGAGCCT 61.334 60.000 0.00 0.00 0.00 4.58
3767 4244 2.690497 CGATTCAGACAGAGCCTCCTAA 59.310 50.000 0.00 0.00 0.00 2.69
3779 4256 1.943340 GCCTCCTAAAGCTCCATTTCG 59.057 52.381 0.00 0.00 0.00 3.46
3781 4258 3.462021 CCTCCTAAAGCTCCATTTCGAG 58.538 50.000 0.00 0.00 0.00 4.04
3793 4270 3.118884 TCCATTTCGAGGGTGCTTAGTAC 60.119 47.826 0.00 0.00 0.00 2.73
3800 4277 1.646977 AGGGTGCTTAGTACTCCCTCT 59.353 52.381 12.36 0.00 45.92 3.69
3803 4280 2.427812 GGTGCTTAGTACTCCCTCTGTC 59.572 54.545 0.00 0.00 0.00 3.51
3805 4282 2.033372 GCTTAGTACTCCCTCTGTCCC 58.967 57.143 0.00 0.00 0.00 4.46
3807 4284 3.917300 CTTAGTACTCCCTCTGTCCCAT 58.083 50.000 0.00 0.00 0.00 4.00
3808 4285 4.691935 GCTTAGTACTCCCTCTGTCCCATA 60.692 50.000 0.00 0.00 0.00 2.74
3809 4286 5.455872 CTTAGTACTCCCTCTGTCCCATAA 58.544 45.833 0.00 0.00 0.00 1.90
3810 4287 4.561254 AGTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
3811 4288 5.681494 AGTACTCCCTCTGTCCCATAATA 57.319 43.478 0.00 0.00 0.00 0.98
3812 4289 6.234404 AGTACTCCCTCTGTCCCATAATAT 57.766 41.667 0.00 0.00 0.00 1.28
3813 4290 7.358255 AGTACTCCCTCTGTCCCATAATATA 57.642 40.000 0.00 0.00 0.00 0.86
3814 4291 7.776745 AGTACTCCCTCTGTCCCATAATATAA 58.223 38.462 0.00 0.00 0.00 0.98
3816 4293 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
3817 4294 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
3819 4296 5.394663 CCCTCTGTCCCATAATATAAGAGCG 60.395 48.000 0.00 0.00 0.00 5.03
3835 4415 3.123804 AGAGCGTTTTGACACTACACTG 58.876 45.455 0.00 0.00 0.00 3.66
3976 4556 4.246712 TCTGGATAACCCGTCTCTACTT 57.753 45.455 0.00 0.00 37.93 2.24
3978 4558 5.950023 TCTGGATAACCCGTCTCTACTTAT 58.050 41.667 0.00 0.00 37.93 1.73
4033 4613 4.315803 CCAAACGAACAGACAGTAGGAAT 58.684 43.478 0.00 0.00 0.00 3.01
4059 4639 5.296780 CCTTCGTATTTGGATATGCACAAGT 59.703 40.000 0.00 0.00 0.00 3.16
4060 4640 5.733226 TCGTATTTGGATATGCACAAGTG 57.267 39.130 0.00 0.00 0.00 3.16
4061 4641 5.182487 TCGTATTTGGATATGCACAAGTGT 58.818 37.500 0.00 0.00 0.00 3.55
4062 4642 5.293324 TCGTATTTGGATATGCACAAGTGTC 59.707 40.000 0.00 0.00 0.00 3.67
4063 4643 4.989279 ATTTGGATATGCACAAGTGTCC 57.011 40.909 0.00 1.77 0.00 4.02
4064 4644 2.022764 TGGATATGCACAAGTGTCCG 57.977 50.000 1.79 0.00 0.00 4.79
4065 4645 1.277842 TGGATATGCACAAGTGTCCGT 59.722 47.619 1.79 0.00 0.00 4.69
4066 4646 1.665679 GGATATGCACAAGTGTCCGTG 59.334 52.381 1.79 0.00 36.18 4.94
4067 4647 2.346803 GATATGCACAAGTGTCCGTGT 58.653 47.619 1.79 0.00 35.51 4.49
4068 4648 2.248280 TATGCACAAGTGTCCGTGTT 57.752 45.000 1.79 0.00 35.51 3.32
4069 4649 2.248280 ATGCACAAGTGTCCGTGTTA 57.752 45.000 1.79 0.00 35.51 2.41
4070 4650 2.248280 TGCACAAGTGTCCGTGTTAT 57.752 45.000 1.79 0.00 35.51 1.89
4127 4708 6.414408 AAAAACGATGTTTGATGCAACAAA 57.586 29.167 17.17 17.17 37.41 2.83
4214 4795 0.179065 GCTACCATGGTTCCCGGTAC 60.179 60.000 25.38 0.00 34.12 3.34
4232 4813 2.512692 ACAAGTTGCTATCATGCCCA 57.487 45.000 1.81 0.00 0.00 5.36
4237 4818 1.336125 GTTGCTATCATGCCCAGAAGC 59.664 52.381 0.00 0.00 0.00 3.86
4267 4848 4.202212 TGACAGTTTTGACTAGCAGCTACA 60.202 41.667 0.00 0.00 0.00 2.74
4294 4891 5.401531 AGAAACCATTACTTGCGACTCTA 57.598 39.130 0.00 0.00 0.00 2.43
4302 4899 6.313905 CCATTACTTGCGACTCTAATCACTTT 59.686 38.462 0.00 0.00 0.00 2.66
4303 4900 7.148407 CCATTACTTGCGACTCTAATCACTTTT 60.148 37.037 0.00 0.00 0.00 2.27
4306 4903 7.907214 ACTTGCGACTCTAATCACTTTTATT 57.093 32.000 0.00 0.00 0.00 1.40
4341 4938 3.326836 TTATGATTGCAGACGTGGTCA 57.673 42.857 0.00 0.00 34.60 4.02
4406 5003 2.357009 GCTCCAAACTGGTCTATGCATG 59.643 50.000 10.16 0.00 39.03 4.06
4412 5009 2.031870 ACTGGTCTATGCATGTCGCTA 58.968 47.619 10.16 0.00 43.06 4.26
4422 5019 1.593070 GCATGTCGCTATCGTTGCTTG 60.593 52.381 0.00 0.00 37.77 4.01
4431 5028 0.035439 ATCGTTGCTTGGGTTCCGAT 60.035 50.000 0.00 0.00 0.00 4.18
4477 5074 4.797800 ATATATGATGACGCAGCTGACT 57.202 40.909 20.43 0.00 0.00 3.41
4525 5160 5.769662 TGATTGTTATTGTTTCCTGACAGCT 59.230 36.000 0.00 0.00 0.00 4.24
4537 5172 0.749818 TGACAGCTTGCGGGTTCAAA 60.750 50.000 0.00 0.00 0.00 2.69
4549 5184 2.988684 TTCAAATTGGCCGCGGCT 60.989 55.556 45.23 27.26 41.60 5.52
4621 5256 2.742856 CGCCAGATGCTACATCCAGAAA 60.743 50.000 4.00 0.00 38.05 2.52
4674 5309 2.565391 TCTTCAAGTCCATCTGCGGTAA 59.435 45.455 0.00 0.00 0.00 2.85
4675 5310 3.197766 TCTTCAAGTCCATCTGCGGTAAT 59.802 43.478 0.00 0.00 0.00 1.89
4677 5312 4.322080 TCAAGTCCATCTGCGGTAATAG 57.678 45.455 0.00 0.00 0.00 1.73
4679 5314 4.404394 TCAAGTCCATCTGCGGTAATAGAA 59.596 41.667 0.00 0.00 0.00 2.10
4682 5317 3.489785 GTCCATCTGCGGTAATAGAAACG 59.510 47.826 0.00 0.00 0.00 3.60
4683 5318 3.382227 TCCATCTGCGGTAATAGAAACGA 59.618 43.478 0.00 0.00 0.00 3.85
4684 5319 4.116961 CCATCTGCGGTAATAGAAACGAA 58.883 43.478 0.00 0.00 0.00 3.85
4685 5320 4.025979 CCATCTGCGGTAATAGAAACGAAC 60.026 45.833 0.00 0.00 0.00 3.95
4686 5321 4.177165 TCTGCGGTAATAGAAACGAACA 57.823 40.909 0.00 0.00 0.00 3.18
4687 5322 3.922240 TCTGCGGTAATAGAAACGAACAC 59.078 43.478 0.00 0.00 0.00 3.32
4692 5327 5.163933 GCGGTAATAGAAACGAACACATTCA 60.164 40.000 0.00 0.00 34.14 2.57
4694 5329 6.953743 CGGTAATAGAAACGAACACATTCAAG 59.046 38.462 0.00 0.00 34.14 3.02
4696 5331 7.955864 GGTAATAGAAACGAACACATTCAAGTC 59.044 37.037 0.00 0.00 34.14 3.01
4698 5333 3.564225 AGAAACGAACACATTCAAGTCCC 59.436 43.478 0.00 0.00 34.14 4.46
4702 5337 4.647611 ACGAACACATTCAAGTCCCAATA 58.352 39.130 0.00 0.00 34.14 1.90
4704 5339 4.435518 CGAACACATTCAAGTCCCAATACG 60.436 45.833 0.00 0.00 34.14 3.06
4705 5340 4.280436 ACACATTCAAGTCCCAATACGA 57.720 40.909 0.00 0.00 0.00 3.43
4706 5341 4.843728 ACACATTCAAGTCCCAATACGAT 58.156 39.130 0.00 0.00 0.00 3.73
4708 5343 5.118990 CACATTCAAGTCCCAATACGATCT 58.881 41.667 0.00 0.00 0.00 2.75
4709 5344 5.235186 CACATTCAAGTCCCAATACGATCTC 59.765 44.000 0.00 0.00 0.00 2.75
4710 5345 4.402056 TTCAAGTCCCAATACGATCTCC 57.598 45.455 0.00 0.00 0.00 3.71
4712 5347 3.967326 TCAAGTCCCAATACGATCTCCAT 59.033 43.478 0.00 0.00 0.00 3.41
4713 5348 5.144832 TCAAGTCCCAATACGATCTCCATA 58.855 41.667 0.00 0.00 0.00 2.74
4714 5349 5.780282 TCAAGTCCCAATACGATCTCCATAT 59.220 40.000 0.00 0.00 0.00 1.78
4715 5350 5.667539 AGTCCCAATACGATCTCCATATG 57.332 43.478 0.00 0.00 0.00 1.78
4721 5356 6.126940 CCCAATACGATCTCCATATGAAGGAT 60.127 42.308 3.65 4.67 33.99 3.24
4722 5357 6.760298 CCAATACGATCTCCATATGAAGGATG 59.240 42.308 3.65 3.40 33.99 3.51
4723 5358 4.199432 ACGATCTCCATATGAAGGATGC 57.801 45.455 3.65 0.08 33.99 3.91
4724 5359 3.580022 ACGATCTCCATATGAAGGATGCA 59.420 43.478 3.65 0.00 33.99 3.96
4750 5407 2.420269 CCAGATGCTGCATTCTGTCTCT 60.420 50.000 25.84 14.35 0.00 3.10
4755 5412 2.299867 TGCTGCATTCTGTCTCTGTGTA 59.700 45.455 0.00 0.00 0.00 2.90
4908 5620 1.630369 AGGTGCTGCCATCAACTTCTA 59.370 47.619 0.00 0.00 40.61 2.10
4917 5629 3.877559 CCATCAACTTCTACTGCCATGA 58.122 45.455 0.00 0.00 0.00 3.07
4978 5690 5.433526 AGCTCAAGTGTAGGTTGTTGTTTA 58.566 37.500 0.00 0.00 0.00 2.01
4982 5704 5.009210 TCAAGTGTAGGTTGTTGTTTATGGC 59.991 40.000 0.00 0.00 0.00 4.40
4984 5706 3.251487 GTGTAGGTTGTTGTTTATGGCGT 59.749 43.478 0.00 0.00 0.00 5.68
5328 8954 2.280797 GCCAGCACCGACAAGACA 60.281 61.111 0.00 0.00 0.00 3.41
5598 9224 5.043248 GGGCAATGTAGAATGTAAACATGC 58.957 41.667 0.00 0.00 36.56 4.06
5610 9236 7.548780 AGAATGTAAACATGCAACTGTTTTTGT 59.451 29.630 20.28 7.81 44.76 2.83
5717 9343 5.233902 CACTCTGAAGTTCTCTTGTGTTCTG 59.766 44.000 4.17 0.00 31.71 3.02
5718 9344 5.127845 ACTCTGAAGTTCTCTTGTGTTCTGA 59.872 40.000 4.17 0.00 33.64 3.27
5719 9345 5.352284 TCTGAAGTTCTCTTGTGTTCTGAC 58.648 41.667 4.17 0.00 33.64 3.51
5724 9350 3.627732 TCTCTTGTGTTCTGACGAGAC 57.372 47.619 0.00 0.00 33.53 3.36
5728 9354 5.240844 TCTCTTGTGTTCTGACGAGACATTA 59.759 40.000 0.00 0.00 33.53 1.90
5737 9363 2.166459 TGACGAGACATTAGCTTCCTGG 59.834 50.000 0.00 0.00 0.00 4.45
5747 9373 2.964310 GCTTCCTGGAGCAGCTGGA 61.964 63.158 17.12 0.00 42.25 3.86
5748 9374 1.078567 CTTCCTGGAGCAGCTGGAC 60.079 63.158 17.12 0.00 0.00 4.02
5749 9375 1.537397 TTCCTGGAGCAGCTGGACT 60.537 57.895 17.12 4.45 0.00 3.85
5882 9514 3.118371 TCTGTCCGTATAGCTGAGACTGA 60.118 47.826 0.00 3.00 34.38 3.41
5987 9620 0.467384 CATAGCTCTGTCAGTGGGGG 59.533 60.000 0.00 0.00 0.00 5.40
6432 10071 6.982141 AGCATTGCCATAATTATTGTTCACTG 59.018 34.615 4.70 0.00 0.00 3.66
6444 10083 9.739276 AATTATTGTTCACTGATGGTTAGAGAA 57.261 29.630 0.00 0.00 0.00 2.87
6589 10233 8.926092 AGAATAAGAGGAAGCTTACAGTTTTT 57.074 30.769 12.25 5.06 33.53 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 97 1.610038 TCTTAGCACGACGACTTTCCA 59.390 47.619 0.00 0.00 0.00 3.53
105 119 1.195442 TGGTGCGTTGGTCCTATGGA 61.195 55.000 0.00 0.00 0.00 3.41
213 247 3.528597 AATCTTCGGTAGACCTGCTTC 57.471 47.619 0.00 0.00 35.19 3.86
216 250 2.100916 TGCTAATCTTCGGTAGACCTGC 59.899 50.000 0.00 0.00 35.19 4.85
220 254 2.543238 CCGGTGCTAATCTTCGGTAGAC 60.543 54.545 0.00 0.00 35.19 2.59
223 257 0.103572 GCCGGTGCTAATCTTCGGTA 59.896 55.000 1.90 0.00 42.35 4.02
249 284 2.181777 GTGTGCAGGATCTCGCGA 59.818 61.111 9.26 9.26 0.00 5.87
334 386 2.835895 TGGCGGCGGCTATGTCTA 60.836 61.111 33.21 9.31 39.81 2.59
416 471 1.071385 GAAGGTGCGGAGGATCATGAT 59.929 52.381 8.25 8.25 36.25 2.45
417 472 0.465705 GAAGGTGCGGAGGATCATGA 59.534 55.000 0.00 0.00 36.25 3.07
420 476 0.178767 CATGAAGGTGCGGAGGATCA 59.821 55.000 0.00 0.00 36.25 2.92
435 491 1.332195 CGATGGTCTCTAGGCCATGA 58.668 55.000 20.50 0.71 44.73 3.07
448 504 1.603455 CTGCCCCAACAACGATGGT 60.603 57.895 0.00 0.00 36.14 3.55
455 511 4.966787 GCCGGTCTGCCCCAACAA 62.967 66.667 1.90 0.00 0.00 2.83
478 540 0.948678 CTCTTCTCCTCCCGTCGATC 59.051 60.000 0.00 0.00 0.00 3.69
527 593 6.828785 GGGTGTTGGACTGATACATTTATTCT 59.171 38.462 0.00 0.00 0.00 2.40
528 594 6.601613 TGGGTGTTGGACTGATACATTTATTC 59.398 38.462 0.00 0.00 0.00 1.75
529 595 6.489603 TGGGTGTTGGACTGATACATTTATT 58.510 36.000 0.00 0.00 0.00 1.40
530 596 6.073447 TGGGTGTTGGACTGATACATTTAT 57.927 37.500 0.00 0.00 0.00 1.40
531 597 5.506730 TGGGTGTTGGACTGATACATTTA 57.493 39.130 0.00 0.00 0.00 1.40
532 598 4.380843 TGGGTGTTGGACTGATACATTT 57.619 40.909 0.00 0.00 0.00 2.32
533 599 4.591321 ATGGGTGTTGGACTGATACATT 57.409 40.909 0.00 0.00 0.00 2.71
534 600 4.591321 AATGGGTGTTGGACTGATACAT 57.409 40.909 0.00 0.00 0.00 2.29
535 601 4.078537 CAAATGGGTGTTGGACTGATACA 58.921 43.478 0.00 0.00 0.00 2.29
536 602 4.156008 GTCAAATGGGTGTTGGACTGATAC 59.844 45.833 0.00 0.00 0.00 2.24
537 603 4.331968 GTCAAATGGGTGTTGGACTGATA 58.668 43.478 0.00 0.00 0.00 2.15
538 604 3.157087 GTCAAATGGGTGTTGGACTGAT 58.843 45.455 0.00 0.00 0.00 2.90
539 605 2.582052 GTCAAATGGGTGTTGGACTGA 58.418 47.619 0.00 0.00 0.00 3.41
540 606 1.613437 GGTCAAATGGGTGTTGGACTG 59.387 52.381 0.00 0.00 0.00 3.51
541 607 1.216678 TGGTCAAATGGGTGTTGGACT 59.783 47.619 0.00 0.00 0.00 3.85
542 608 1.698506 TGGTCAAATGGGTGTTGGAC 58.301 50.000 0.00 0.00 0.00 4.02
543 609 2.158400 TCATGGTCAAATGGGTGTTGGA 60.158 45.455 0.00 0.00 0.00 3.53
544 610 2.231964 CTCATGGTCAAATGGGTGTTGG 59.768 50.000 0.00 0.00 0.00 3.77
545 611 2.353011 GCTCATGGTCAAATGGGTGTTG 60.353 50.000 0.00 0.00 30.13 3.33
546 612 1.895131 GCTCATGGTCAAATGGGTGTT 59.105 47.619 0.00 0.00 30.13 3.32
547 613 1.203038 TGCTCATGGTCAAATGGGTGT 60.203 47.619 0.00 0.00 30.13 4.16
548 614 1.548081 TGCTCATGGTCAAATGGGTG 58.452 50.000 0.00 0.00 30.13 4.61
549 615 2.307496 TTGCTCATGGTCAAATGGGT 57.693 45.000 0.00 0.00 30.13 4.51
550 616 5.341872 TTTATTGCTCATGGTCAAATGGG 57.658 39.130 0.00 0.00 0.00 4.00
551 617 8.945481 TTTATTTATTGCTCATGGTCAAATGG 57.055 30.769 0.00 0.00 0.00 3.16
578 644 9.472361 ACGTGAACGATGCTATAGTATTTATTT 57.528 29.630 10.26 0.00 43.02 1.40
579 645 9.472361 AACGTGAACGATGCTATAGTATTTATT 57.528 29.630 10.26 0.68 43.02 1.40
580 646 9.472361 AAACGTGAACGATGCTATAGTATTTAT 57.528 29.630 10.26 0.00 43.02 1.40
581 647 8.861033 AAACGTGAACGATGCTATAGTATTTA 57.139 30.769 10.26 0.00 43.02 1.40
582 648 7.766219 AAACGTGAACGATGCTATAGTATTT 57.234 32.000 10.26 0.00 43.02 1.40
583 649 7.766219 AAAACGTGAACGATGCTATAGTATT 57.234 32.000 10.26 0.00 43.02 1.89
584 650 7.766219 AAAAACGTGAACGATGCTATAGTAT 57.234 32.000 10.26 2.61 43.02 2.12
605 671 3.834489 ATGGATGTTGTGGTGCAAAAA 57.166 38.095 0.00 0.00 39.03 1.94
606 672 3.834489 AATGGATGTTGTGGTGCAAAA 57.166 38.095 0.00 0.00 39.03 2.44
607 673 3.834489 AAATGGATGTTGTGGTGCAAA 57.166 38.095 0.00 0.00 39.03 3.68
608 674 4.944619 TTAAATGGATGTTGTGGTGCAA 57.055 36.364 0.00 0.00 34.16 4.08
609 675 5.480642 AATTAAATGGATGTTGTGGTGCA 57.519 34.783 0.00 0.00 0.00 4.57
610 676 6.034470 CGTTAATTAAATGGATGTTGTGGTGC 59.966 38.462 0.00 0.00 0.00 5.01
611 677 7.309177 TCGTTAATTAAATGGATGTTGTGGTG 58.691 34.615 0.00 0.00 0.00 4.17
612 678 7.455641 TCGTTAATTAAATGGATGTTGTGGT 57.544 32.000 0.00 0.00 0.00 4.16
613 679 7.487829 CCTTCGTTAATTAAATGGATGTTGTGG 59.512 37.037 0.00 0.00 0.00 4.17
614 680 8.240682 TCCTTCGTTAATTAAATGGATGTTGTG 58.759 33.333 0.00 0.00 0.00 3.33
615 681 8.343168 TCCTTCGTTAATTAAATGGATGTTGT 57.657 30.769 0.00 0.00 0.00 3.32
616 682 9.801873 ATTCCTTCGTTAATTAAATGGATGTTG 57.198 29.630 0.00 0.00 0.00 3.33
628 694 9.067986 GGGATTCTGATAATTCCTTCGTTAATT 57.932 33.333 0.00 0.00 0.00 1.40
629 695 7.665974 GGGGATTCTGATAATTCCTTCGTTAAT 59.334 37.037 0.00 0.00 0.00 1.40
630 696 6.996282 GGGGATTCTGATAATTCCTTCGTTAA 59.004 38.462 0.00 0.00 0.00 2.01
631 697 6.329197 AGGGGATTCTGATAATTCCTTCGTTA 59.671 38.462 0.00 0.00 0.00 3.18
632 698 5.132816 AGGGGATTCTGATAATTCCTTCGTT 59.867 40.000 0.00 0.00 0.00 3.85
633 699 4.660771 AGGGGATTCTGATAATTCCTTCGT 59.339 41.667 0.00 0.00 0.00 3.85
634 700 4.999950 CAGGGGATTCTGATAATTCCTTCG 59.000 45.833 0.00 0.00 36.93 3.79
741 808 2.231380 TGGGAAGGAAGGTGGAGGC 61.231 63.158 0.00 0.00 0.00 4.70
835 917 1.680249 GCTTTGGTCAGATGAGGGGAC 60.680 57.143 0.00 0.00 0.00 4.46
864 946 1.909302 TGGACAGAGAGGGGAAATGAC 59.091 52.381 0.00 0.00 0.00 3.06
917 1014 2.618045 GGTGGAGGGACAATTCGTTGAT 60.618 50.000 0.00 0.00 0.00 2.57
978 1082 2.633657 CCTCTGTGTGTGCGCAAC 59.366 61.111 14.00 13.70 34.39 4.17
994 1098 2.508526 GTATTGCACATCCATCTCCCC 58.491 52.381 0.00 0.00 0.00 4.81
1030 1152 1.904144 CATTTGCAGATGGAGTTGCG 58.096 50.000 9.34 0.00 43.13 4.85
1064 1190 0.609957 TGCTTGCAACCCAGAGATGG 60.610 55.000 0.00 0.00 0.00 3.51
1088 1214 3.822192 ATGCACCGTCGCTAGCGA 61.822 61.111 34.66 34.66 46.87 4.93
1089 1215 3.620428 CATGCACCGTCGCTAGCG 61.620 66.667 30.91 30.91 41.35 4.26
1154 1313 0.820226 CTCCTGCAGGATCAGTCGAA 59.180 55.000 35.11 10.41 44.46 3.71
1224 1383 1.003355 CTTGGGCGAGGAAGAAGCA 60.003 57.895 0.00 0.00 0.00 3.91
1322 1517 4.093556 GTCATAGCTACTGTTGAAGTTGGC 59.906 45.833 0.00 0.00 40.56 4.52
1324 1519 8.709386 ATTAGTCATAGCTACTGTTGAAGTTG 57.291 34.615 0.00 0.00 40.56 3.16
1398 1598 5.125100 AGCAAATTGACACACATACAAGG 57.875 39.130 0.00 0.00 0.00 3.61
1412 1621 2.496871 TGCCATACCCTGAAGCAAATTG 59.503 45.455 0.00 0.00 0.00 2.32
1413 1622 2.818921 TGCCATACCCTGAAGCAAATT 58.181 42.857 0.00 0.00 0.00 1.82
1483 1692 2.308690 ACGGAGATAGGTACCAAGAGC 58.691 52.381 15.94 1.32 0.00 4.09
1484 1693 6.651975 ATAAACGGAGATAGGTACCAAGAG 57.348 41.667 15.94 1.03 0.00 2.85
1519 1731 7.568199 TTTTCTCTGAAACTACCTCCAAAAG 57.432 36.000 0.00 0.00 0.00 2.27
1554 1766 7.454694 GGCTTCCATACCCCTTATCATATTTTT 59.545 37.037 0.00 0.00 0.00 1.94
1555 1767 6.954102 GGCTTCCATACCCCTTATCATATTTT 59.046 38.462 0.00 0.00 0.00 1.82
1565 1777 4.966377 AGGGCTTCCATACCCCTT 57.034 55.556 0.00 0.00 46.98 3.95
1605 1832 2.162809 ACCGCACACCGAAAATAATTCC 59.837 45.455 0.00 0.00 40.02 3.01
1666 1899 5.421056 AGTCATGGATGATGCAAGAACAAAT 59.579 36.000 0.00 0.00 39.30 2.32
1737 1970 4.004196 TGCATGCATCTAGAAGGATCAG 57.996 45.455 18.46 0.00 0.00 2.90
1758 1998 1.356124 ACAACCAGACTGAGGCTGAT 58.644 50.000 18.82 0.00 35.39 2.90
1769 2009 6.206787 TCCCATACTCCTATTAACAACCAGA 58.793 40.000 0.00 0.00 0.00 3.86
1787 2036 1.635487 GCCTCCCATGCTATTCCCATA 59.365 52.381 0.00 0.00 0.00 2.74
1881 2130 5.109903 CGGAGGGAGTAACTGTTAAATCTG 58.890 45.833 1.10 0.00 0.00 2.90
1893 2142 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
1906 2155 8.137437 GTGTCAAAAATGGTCTCATATTATGGG 58.863 37.037 3.89 0.31 32.44 4.00
1907 2156 8.906867 AGTGTCAAAAATGGTCTCATATTATGG 58.093 33.333 3.89 0.00 32.44 2.74
1916 2165 6.483640 AGAGTGTTAGTGTCAAAAATGGTCTC 59.516 38.462 0.00 0.00 0.00 3.36
1927 2176 9.429109 TCCCATAATATAAGAGTGTTAGTGTCA 57.571 33.333 0.00 0.00 0.00 3.58
1928 2177 9.694137 GTCCCATAATATAAGAGTGTTAGTGTC 57.306 37.037 0.00 0.00 0.00 3.67
1929 2178 8.358148 CGTCCCATAATATAAGAGTGTTAGTGT 58.642 37.037 0.00 0.00 0.00 3.55
1932 2181 8.118976 TCCGTCCCATAATATAAGAGTGTTAG 57.881 38.462 0.00 0.00 0.00 2.34
1936 2185 6.154534 TCCATCCGTCCCATAATATAAGAGTG 59.845 42.308 0.00 0.00 0.00 3.51
1937 2186 6.261435 TCCATCCGTCCCATAATATAAGAGT 58.739 40.000 0.00 0.00 0.00 3.24
1938 2187 6.381420 ACTCCATCCGTCCCATAATATAAGAG 59.619 42.308 0.00 0.00 0.00 2.85
1939 2188 6.261435 ACTCCATCCGTCCCATAATATAAGA 58.739 40.000 0.00 0.00 0.00 2.10
1941 2190 7.093201 GGTTACTCCATCCGTCCCATAATATAA 60.093 40.741 0.00 0.00 35.97 0.98
1942 2191 6.381994 GGTTACTCCATCCGTCCCATAATATA 59.618 42.308 0.00 0.00 35.97 0.86
1943 2192 5.189145 GGTTACTCCATCCGTCCCATAATAT 59.811 44.000 0.00 0.00 35.97 1.28
1944 2193 4.529377 GGTTACTCCATCCGTCCCATAATA 59.471 45.833 0.00 0.00 35.97 0.98
1945 2194 3.326880 GGTTACTCCATCCGTCCCATAAT 59.673 47.826 0.00 0.00 35.97 1.28
1946 2195 2.701951 GGTTACTCCATCCGTCCCATAA 59.298 50.000 0.00 0.00 35.97 1.90
1947 2196 2.090943 AGGTTACTCCATCCGTCCCATA 60.091 50.000 0.00 0.00 39.02 2.74
1948 2197 1.129058 GGTTACTCCATCCGTCCCAT 58.871 55.000 0.00 0.00 35.97 4.00
1949 2198 0.042131 AGGTTACTCCATCCGTCCCA 59.958 55.000 0.00 0.00 39.02 4.37
1950 2199 1.201424 AAGGTTACTCCATCCGTCCC 58.799 55.000 0.00 0.00 39.02 4.46
1951 2200 3.196254 TGTTAAGGTTACTCCATCCGTCC 59.804 47.826 0.00 0.00 39.02 4.79
1952 2201 4.460948 TGTTAAGGTTACTCCATCCGTC 57.539 45.455 0.00 0.00 39.02 4.79
1953 2202 5.895534 TCTATGTTAAGGTTACTCCATCCGT 59.104 40.000 0.00 0.00 39.02 4.69
1954 2203 6.401047 TCTATGTTAAGGTTACTCCATCCG 57.599 41.667 0.00 0.00 39.02 4.18
1955 2204 8.483758 TCTTTCTATGTTAAGGTTACTCCATCC 58.516 37.037 0.00 0.00 39.02 3.51
1956 2205 9.535878 CTCTTTCTATGTTAAGGTTACTCCATC 57.464 37.037 0.00 0.00 39.02 3.51
1957 2206 7.988028 GCTCTTTCTATGTTAAGGTTACTCCAT 59.012 37.037 0.00 0.00 39.02 3.41
1958 2207 7.328737 GCTCTTTCTATGTTAAGGTTACTCCA 58.671 38.462 0.00 0.00 39.02 3.86
1959 2208 6.476053 CGCTCTTTCTATGTTAAGGTTACTCC 59.524 42.308 0.00 0.00 0.00 3.85
1960 2209 6.019720 GCGCTCTTTCTATGTTAAGGTTACTC 60.020 42.308 0.00 0.00 0.00 2.59
1961 2210 5.811100 GCGCTCTTTCTATGTTAAGGTTACT 59.189 40.000 0.00 0.00 0.00 2.24
1962 2211 5.811100 AGCGCTCTTTCTATGTTAAGGTTAC 59.189 40.000 2.64 0.00 0.00 2.50
1963 2212 5.810587 CAGCGCTCTTTCTATGTTAAGGTTA 59.189 40.000 7.13 0.00 0.00 2.85
1964 2213 4.631813 CAGCGCTCTTTCTATGTTAAGGTT 59.368 41.667 7.13 0.00 0.00 3.50
1990 2239 7.108841 TGGGATACTATGAAACTGTGTAGTC 57.891 40.000 0.00 0.00 35.69 2.59
1991 2240 7.180408 ACTTGGGATACTATGAAACTGTGTAGT 59.820 37.037 0.00 0.00 39.32 2.73
1992 2241 7.556844 ACTTGGGATACTATGAAACTGTGTAG 58.443 38.462 0.00 0.00 0.00 2.74
1993 2242 7.490657 ACTTGGGATACTATGAAACTGTGTA 57.509 36.000 0.00 0.00 0.00 2.90
1994 2243 6.374417 ACTTGGGATACTATGAAACTGTGT 57.626 37.500 0.00 0.00 0.00 3.72
1995 2244 7.106239 AGAACTTGGGATACTATGAAACTGTG 58.894 38.462 0.00 0.00 0.00 3.66
1996 2245 7.259088 AGAACTTGGGATACTATGAAACTGT 57.741 36.000 0.00 0.00 0.00 3.55
1997 2246 8.567285 AAAGAACTTGGGATACTATGAAACTG 57.433 34.615 0.00 0.00 0.00 3.16
1998 2247 7.549488 CGAAAGAACTTGGGATACTATGAAACT 59.451 37.037 0.00 0.00 0.00 2.66
1999 2248 7.548075 TCGAAAGAACTTGGGATACTATGAAAC 59.452 37.037 0.00 0.00 37.03 2.78
2000 2249 7.617225 TCGAAAGAACTTGGGATACTATGAAA 58.383 34.615 0.00 0.00 37.03 2.69
2001 2250 7.177832 TCGAAAGAACTTGGGATACTATGAA 57.822 36.000 0.00 0.00 37.03 2.57
2002 2251 6.785337 TCGAAAGAACTTGGGATACTATGA 57.215 37.500 0.00 0.00 37.03 2.15
2028 2277 7.993821 TTAAAATTGTTTGACGATCAGCAAA 57.006 28.000 6.01 6.01 30.97 3.68
2060 2317 4.378459 GCTTGTGTTTCGATCCACTAAAGG 60.378 45.833 13.95 0.00 32.76 3.11
2063 2320 4.002906 AGCTTGTGTTTCGATCCACTAA 57.997 40.909 13.95 7.60 32.76 2.24
2077 2344 1.775208 CGAGAAAACGCAAAGCTTGTG 59.225 47.619 0.00 3.78 46.24 3.33
2078 2345 1.668751 TCGAGAAAACGCAAAGCTTGT 59.331 42.857 0.00 0.00 0.00 3.16
2108 2375 3.370840 TCCCTAGACTGCAATGCAATT 57.629 42.857 9.92 0.00 38.41 2.32
2150 2417 4.069304 TGTGGCCACTAATCTGTTTACAC 58.931 43.478 34.75 4.61 0.00 2.90
2156 2423 1.279271 GGTCTGTGGCCACTAATCTGT 59.721 52.381 34.75 0.00 0.00 3.41
2159 2426 2.717639 ATGGTCTGTGGCCACTAATC 57.282 50.000 34.75 22.98 39.03 1.75
2171 2438 3.938963 AGTACACGGCAATTAATGGTCTG 59.061 43.478 0.00 0.00 0.00 3.51
2224 2491 4.252971 TCACCAGCAAGTAGTTGTAGTC 57.747 45.455 11.85 0.00 35.92 2.59
2237 2504 4.281657 AGTCACAGTATCTATCACCAGCA 58.718 43.478 0.00 0.00 0.00 4.41
2253 2520 4.717877 ACTGTCCAATTCATGAAGTCACA 58.282 39.130 14.54 14.04 0.00 3.58
2304 2571 2.363306 AGACCATTGTCAACCAGCAA 57.637 45.000 0.00 0.00 44.33 3.91
2305 2572 2.363306 AAGACCATTGTCAACCAGCA 57.637 45.000 0.00 0.00 44.33 4.41
2306 2573 4.437390 CGAATAAGACCATTGTCAACCAGC 60.437 45.833 0.00 0.00 44.33 4.85
2307 2574 4.935205 TCGAATAAGACCATTGTCAACCAG 59.065 41.667 0.00 0.00 44.33 4.00
2308 2575 4.900684 TCGAATAAGACCATTGTCAACCA 58.099 39.130 0.00 0.00 44.33 3.67
2309 2576 5.007724 GGATCGAATAAGACCATTGTCAACC 59.992 44.000 0.00 0.00 44.33 3.77
2310 2577 5.584649 TGGATCGAATAAGACCATTGTCAAC 59.415 40.000 0.00 0.00 44.33 3.18
2311 2578 5.739959 TGGATCGAATAAGACCATTGTCAA 58.260 37.500 0.00 0.00 44.33 3.18
2351 2618 5.813672 GCATGTACCCTCGACAATTAGTTAA 59.186 40.000 0.00 0.00 0.00 2.01
2352 2619 5.105269 TGCATGTACCCTCGACAATTAGTTA 60.105 40.000 0.00 0.00 0.00 2.24
2385 2654 6.711277 TCTGTAGTAGCATGGTTTTCAAGAT 58.289 36.000 1.12 0.00 0.00 2.40
2397 2666 6.166982 GTCAACTCCTTTTCTGTAGTAGCAT 58.833 40.000 0.00 0.00 0.00 3.79
2435 2704 1.266989 GCAAAGGCACAGTACCAGTTC 59.733 52.381 0.00 0.00 40.72 3.01
2436 2705 1.133792 AGCAAAGGCACAGTACCAGTT 60.134 47.619 0.00 0.00 44.61 3.16
2438 2707 2.472695 TAGCAAAGGCACAGTACCAG 57.527 50.000 0.00 0.00 44.61 4.00
2439 2708 2.940994 TTAGCAAAGGCACAGTACCA 57.059 45.000 0.00 0.00 44.61 3.25
2440 2709 5.890424 TTAATTAGCAAAGGCACAGTACC 57.110 39.130 0.00 0.00 44.61 3.34
2448 2723 5.828328 AGGACCAGTATTAATTAGCAAAGGC 59.172 40.000 0.00 0.00 41.61 4.35
2449 2724 7.227512 CAGAGGACCAGTATTAATTAGCAAAGG 59.772 40.741 0.00 0.00 0.00 3.11
2460 2735 4.415846 TCCTAGAGCAGAGGACCAGTATTA 59.584 45.833 0.00 0.00 38.22 0.98
2461 2736 3.205507 TCCTAGAGCAGAGGACCAGTATT 59.794 47.826 0.00 0.00 38.22 1.89
2462 2737 2.786445 TCCTAGAGCAGAGGACCAGTAT 59.214 50.000 0.00 0.00 38.22 2.12
2463 2738 2.206223 TCCTAGAGCAGAGGACCAGTA 58.794 52.381 0.00 0.00 38.22 2.74
2464 2739 1.003646 TCCTAGAGCAGAGGACCAGT 58.996 55.000 0.00 0.00 38.22 4.00
2465 2740 2.031120 CTTCCTAGAGCAGAGGACCAG 58.969 57.143 1.01 0.00 42.96 4.00
2480 2755 7.337942 CCTACAATGAGCAAAATACTTCTTCCT 59.662 37.037 0.00 0.00 0.00 3.36
2515 2790 7.893302 TGGGTGGTAAGTAATTGATCTGAATTT 59.107 33.333 0.00 0.00 0.00 1.82
2542 2817 8.438676 AGAATAAATGACGATCCGATTCTTTT 57.561 30.769 0.00 0.00 30.00 2.27
2549 2824 5.767816 TGAGAGAATAAATGACGATCCGA 57.232 39.130 0.00 0.00 0.00 4.55
2581 2861 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2582 2862 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2589 2869 3.120095 CCAGCAGATTATGTGTGTGTGTG 60.120 47.826 0.00 0.00 0.00 3.82
2591 2871 2.159476 GCCAGCAGATTATGTGTGTGTG 60.159 50.000 0.00 0.00 0.00 3.82
2593 2873 2.086094 TGCCAGCAGATTATGTGTGTG 58.914 47.619 0.00 0.00 0.00 3.82
2595 2875 2.034179 CCATGCCAGCAGATTATGTGTG 59.966 50.000 0.00 0.00 0.00 3.82
2596 2876 2.304092 CCATGCCAGCAGATTATGTGT 58.696 47.619 0.00 0.00 0.00 3.72
2597 2877 1.611977 CCCATGCCAGCAGATTATGTG 59.388 52.381 0.00 0.00 0.00 3.21
2599 2879 2.281539 TCCCATGCCAGCAGATTATG 57.718 50.000 0.00 0.00 0.00 1.90
2601 2881 2.658285 CTTTCCCATGCCAGCAGATTA 58.342 47.619 0.00 0.00 0.00 1.75
2603 2883 1.041447 GCTTTCCCATGCCAGCAGAT 61.041 55.000 0.00 0.00 32.17 2.90
2604 2884 1.679977 GCTTTCCCATGCCAGCAGA 60.680 57.895 0.00 0.00 32.17 4.26
2605 2885 1.681327 AGCTTTCCCATGCCAGCAG 60.681 57.895 0.00 0.00 34.49 4.24
2607 2887 2.890371 CAGCTTTCCCATGCCAGC 59.110 61.111 0.00 0.00 0.00 4.85
2608 2888 1.255667 AAGCAGCTTTCCCATGCCAG 61.256 55.000 0.21 0.00 40.89 4.85
2609 2889 0.832983 AAAGCAGCTTTCCCATGCCA 60.833 50.000 15.07 0.00 40.89 4.92
2612 2892 3.604875 ATCAAAAGCAGCTTTCCCATG 57.395 42.857 20.85 14.81 31.99 3.66
2613 2893 5.481473 TCTTTATCAAAAGCAGCTTTCCCAT 59.519 36.000 20.85 14.28 41.64 4.00
2614 2894 4.832266 TCTTTATCAAAAGCAGCTTTCCCA 59.168 37.500 20.85 8.19 41.64 4.37
2615 2895 5.391312 TCTTTATCAAAAGCAGCTTTCCC 57.609 39.130 20.85 0.00 41.64 3.97
2616 2896 5.405797 CCTCTTTATCAAAAGCAGCTTTCC 58.594 41.667 20.85 0.00 41.64 3.13
2639 2977 1.002033 GCGTTGGCATCATCATCTTCC 60.002 52.381 0.00 0.00 39.62 3.46
2653 2991 1.264288 GGAACTTCAGAAGTGCGTTGG 59.736 52.381 16.85 0.00 41.91 3.77
2658 2996 1.604278 GTGGTGGAACTTCAGAAGTGC 59.396 52.381 16.85 14.66 41.91 4.40
2660 2998 1.202651 CCGTGGTGGAACTTCAGAAGT 60.203 52.381 10.27 10.27 45.46 3.01
2757 3096 0.673437 ACGGCAACCAACAATCTTGG 59.327 50.000 0.00 0.00 44.91 3.61
2849 3200 0.947180 CAACCGTAGACCCAACCACG 60.947 60.000 0.00 0.00 0.00 4.94
2896 3247 7.281999 TCAATGCGTTGATCAATTAGTCCATTA 59.718 33.333 17.41 0.00 39.36 1.90
2922 3273 5.239525 GGAAGTGTACAGAAGCAAAGTTCAT 59.760 40.000 0.00 0.00 0.00 2.57
2924 3275 4.816925 AGGAAGTGTACAGAAGCAAAGTTC 59.183 41.667 0.00 0.00 0.00 3.01
2925 3276 4.781934 AGGAAGTGTACAGAAGCAAAGTT 58.218 39.130 0.00 0.00 0.00 2.66
2940 3291 9.946165 AAAATTCGTAAACTTTTCTAGGAAGTG 57.054 29.630 11.53 0.08 37.41 3.16
2945 3296 8.850452 GCATCAAAATTCGTAAACTTTTCTAGG 58.150 33.333 0.00 0.00 0.00 3.02
2966 3317 4.736126 TCTCGACCTTTAATCTGCATCA 57.264 40.909 0.00 0.00 0.00 3.07
2997 3348 9.359653 ACAGTATACTAGTATTATTGAACGGGT 57.640 33.333 20.21 11.55 0.00 5.28
3398 3866 9.923143 CCATCACTTCGAATATAAGGTTACATA 57.077 33.333 0.00 0.00 0.00 2.29
3423 3892 2.202960 TATACGCCGCTTGCCACC 60.203 61.111 0.00 0.00 36.24 4.61
3429 3898 0.107848 AAACAGCCTATACGCCGCTT 60.108 50.000 0.00 0.00 0.00 4.68
3433 3902 1.014352 CACCAAACAGCCTATACGCC 58.986 55.000 0.00 0.00 0.00 5.68
3450 3919 0.606604 TAACCTTCCGAGTCAGCCAC 59.393 55.000 0.00 0.00 0.00 5.01
3453 3922 2.029290 TCAGTTAACCTTCCGAGTCAGC 60.029 50.000 0.88 0.00 0.00 4.26
3502 3971 5.335348 GCGGCCACTTCTAGTTTAAATGAAA 60.335 40.000 2.24 0.00 0.00 2.69
3503 3972 4.155280 GCGGCCACTTCTAGTTTAAATGAA 59.845 41.667 2.24 0.00 0.00 2.57
3505 3974 3.438781 TGCGGCCACTTCTAGTTTAAATG 59.561 43.478 2.24 0.00 0.00 2.32
3506 3975 3.439129 GTGCGGCCACTTCTAGTTTAAAT 59.561 43.478 2.24 0.00 38.93 1.40
3507 3976 2.809696 GTGCGGCCACTTCTAGTTTAAA 59.190 45.455 2.24 0.00 38.93 1.52
3536 4007 1.666888 CCCACAGCAAAAATCAGCGTC 60.667 52.381 0.00 0.00 35.48 5.19
3614 4085 3.368571 GGAGGGGTTCGACGACGT 61.369 66.667 0.00 0.00 40.69 4.34
3616 4087 3.767806 GGGGAGGGGTTCGACGAC 61.768 72.222 0.00 0.00 0.00 4.34
3617 4088 3.951769 GAGGGGAGGGGTTCGACGA 62.952 68.421 0.00 0.00 0.00 4.20
3618 4089 3.459063 GAGGGGAGGGGTTCGACG 61.459 72.222 0.00 0.00 0.00 5.12
3621 4092 3.400054 GGTGAGGGGAGGGGTTCG 61.400 72.222 0.00 0.00 0.00 3.95
3633 4104 2.661537 TGCGTGTTGCTCGGTGAG 60.662 61.111 0.00 0.00 46.63 3.51
3634 4105 2.964925 GTGCGTGTTGCTCGGTGA 60.965 61.111 0.00 0.00 46.63 4.02
3658 4129 4.947147 TTGTGGGTGTGGCCGAGC 62.947 66.667 0.00 0.00 38.44 5.03
3679 4150 4.634443 GCCTTTGTAAGCCGATTTCTTCTA 59.366 41.667 0.00 0.00 0.00 2.10
3714 4185 2.446994 TGTGGGACCCGGTTGTCT 60.447 61.111 5.91 0.00 35.54 3.41
3762 4239 2.170607 CCCTCGAAATGGAGCTTTAGGA 59.829 50.000 0.00 0.00 32.57 2.94
3767 4244 0.678048 GCACCCTCGAAATGGAGCTT 60.678 55.000 9.47 0.00 32.57 3.74
3779 4256 2.162264 AGGGAGTACTAAGCACCCTC 57.838 55.000 12.36 0.00 46.70 4.30
3781 4258 1.757699 CAGAGGGAGTACTAAGCACCC 59.242 57.143 8.28 8.28 40.71 4.61
3803 4280 7.226720 AGTGTCAAAACGCTCTTATATTATGGG 59.773 37.037 0.00 0.00 42.59 4.00
3807 4284 9.079833 GTGTAGTGTCAAAACGCTCTTATATTA 57.920 33.333 0.00 0.00 42.59 0.98
3808 4285 7.817962 AGTGTAGTGTCAAAACGCTCTTATATT 59.182 33.333 0.00 0.00 42.59 1.28
3809 4286 7.275779 CAGTGTAGTGTCAAAACGCTCTTATAT 59.724 37.037 0.00 0.00 42.59 0.86
3810 4287 6.584942 CAGTGTAGTGTCAAAACGCTCTTATA 59.415 38.462 0.00 0.00 42.59 0.98
3811 4288 5.405571 CAGTGTAGTGTCAAAACGCTCTTAT 59.594 40.000 0.00 0.00 42.59 1.73
3812 4289 4.743151 CAGTGTAGTGTCAAAACGCTCTTA 59.257 41.667 0.00 0.00 42.59 2.10
3813 4290 3.555956 CAGTGTAGTGTCAAAACGCTCTT 59.444 43.478 0.00 0.00 42.59 2.85
3814 4291 3.123804 CAGTGTAGTGTCAAAACGCTCT 58.876 45.455 0.00 0.00 42.59 4.09
3817 4294 4.684703 AGATACAGTGTAGTGTCAAAACGC 59.315 41.667 9.25 0.00 32.72 4.84
3819 4296 8.583810 TTACAGATACAGTGTAGTGTCAAAAC 57.416 34.615 19.40 0.00 32.72 2.43
3835 4415 8.604890 GCTTTCAGGTATTGTCTTTACAGATAC 58.395 37.037 0.00 0.00 36.83 2.24
3904 4484 2.727123 TGTCCATGACAACAACACCT 57.273 45.000 0.00 0.00 39.78 4.00
3905 4485 2.030007 CCATGTCCATGACAACAACACC 60.030 50.000 8.82 0.00 45.96 4.16
4007 4587 1.400494 ACTGTCTGTTCGTTTGGCAAC 59.600 47.619 0.00 0.00 0.00 4.17
4033 4613 3.563808 GTGCATATCCAAATACGAAGGCA 59.436 43.478 0.00 0.00 0.00 4.75
4059 4639 2.485903 GGTCAACACATAACACGGACA 58.514 47.619 0.00 0.00 0.00 4.02
4060 4640 1.802365 GGGTCAACACATAACACGGAC 59.198 52.381 0.00 0.00 0.00 4.79
4061 4641 1.416772 TGGGTCAACACATAACACGGA 59.583 47.619 0.00 0.00 0.00 4.69
4062 4642 1.885560 TGGGTCAACACATAACACGG 58.114 50.000 0.00 0.00 0.00 4.94
4063 4643 3.334691 AGATGGGTCAACACATAACACG 58.665 45.455 0.00 0.00 40.68 4.49
4064 4644 5.240623 TGAAAGATGGGTCAACACATAACAC 59.759 40.000 0.00 0.00 40.68 3.32
4065 4645 5.380900 TGAAAGATGGGTCAACACATAACA 58.619 37.500 0.00 0.00 40.68 2.41
4066 4646 5.957842 TGAAAGATGGGTCAACACATAAC 57.042 39.130 0.00 0.00 40.68 1.89
4067 4647 5.105797 GCATGAAAGATGGGTCAACACATAA 60.106 40.000 0.00 0.00 40.68 1.90
4068 4648 4.398988 GCATGAAAGATGGGTCAACACATA 59.601 41.667 0.00 0.00 40.68 2.29
4069 4649 3.194116 GCATGAAAGATGGGTCAACACAT 59.806 43.478 0.00 0.00 43.87 3.21
4070 4650 2.557924 GCATGAAAGATGGGTCAACACA 59.442 45.455 0.00 0.00 0.00 3.72
4109 4689 4.445052 ACACATTTGTTGCATCAAACATCG 59.555 37.500 21.89 14.12 39.68 3.84
4214 4795 2.646930 TCTGGGCATGATAGCAACTTG 58.353 47.619 0.00 0.00 35.83 3.16
4232 4813 4.889409 TCAAAACTGTCATTTCCTGCTTCT 59.111 37.500 0.00 0.00 0.00 2.85
4237 4818 5.239306 TGCTAGTCAAAACTGTCATTTCCTG 59.761 40.000 0.00 0.00 36.92 3.86
4267 4848 5.473504 AGTCGCAAGTAATGGTTTCTTGATT 59.526 36.000 11.60 0.00 40.35 2.57
4306 4903 9.585099 CTGCAATCATAAATAAAAGGCTTGTTA 57.415 29.630 0.00 2.55 0.00 2.41
4319 4916 4.260985 TGACCACGTCTGCAATCATAAAT 58.739 39.130 0.00 0.00 33.15 1.40
4372 4969 5.710099 CCAGTTTGGAGCCTTAAAACTATGA 59.290 40.000 5.66 0.00 41.08 2.15
4373 4970 5.476945 ACCAGTTTGGAGCCTTAAAACTATG 59.523 40.000 1.40 4.07 41.08 2.23
4374 4971 5.641155 ACCAGTTTGGAGCCTTAAAACTAT 58.359 37.500 1.40 0.00 41.08 2.12
4375 4972 5.056553 ACCAGTTTGGAGCCTTAAAACTA 57.943 39.130 1.40 0.00 41.08 2.24
4376 4973 3.889538 GACCAGTTTGGAGCCTTAAAACT 59.110 43.478 1.40 1.16 43.18 2.66
4377 4974 3.889538 AGACCAGTTTGGAGCCTTAAAAC 59.110 43.478 1.40 0.00 40.96 2.43
4385 4982 2.113860 TGCATAGACCAGTTTGGAGC 57.886 50.000 1.40 0.00 40.96 4.70
4406 5003 0.739813 ACCCAAGCAACGATAGCGAC 60.740 55.000 7.69 0.00 41.64 5.19
4412 5009 0.035439 ATCGGAACCCAAGCAACGAT 60.035 50.000 0.00 0.00 36.38 3.73
4422 5019 2.882137 TCTTGTGTTTCAATCGGAACCC 59.118 45.455 0.00 0.00 34.56 4.11
4431 5028 6.064060 ACAGGATCAATCTCTTGTGTTTCAA 58.936 36.000 0.00 0.00 33.87 2.69
4477 5074 1.148273 AACTTGCAAGACAGCGGGA 59.852 52.632 32.50 0.00 37.31 5.14
4482 5079 5.679734 ATCAGTTACAACTTGCAAGACAG 57.320 39.130 32.50 21.43 37.08 3.51
4525 5160 1.369321 GGCCAATTTGAACCCGCAA 59.631 52.632 0.00 0.00 0.00 4.85
4549 5184 2.266372 CCGAACACGCCATACCCA 59.734 61.111 0.00 0.00 0.00 4.51
4555 5190 3.375239 TCGATCCCGAACACGCCA 61.375 61.111 0.00 0.00 42.51 5.69
4674 5309 5.411669 GGGACTTGAATGTGTTCGTTTCTAT 59.588 40.000 0.00 0.00 37.15 1.98
4675 5310 4.753107 GGGACTTGAATGTGTTCGTTTCTA 59.247 41.667 0.00 0.00 37.15 2.10
4677 5312 3.314080 TGGGACTTGAATGTGTTCGTTTC 59.686 43.478 0.00 0.00 37.15 2.78
4679 5314 2.925724 TGGGACTTGAATGTGTTCGTT 58.074 42.857 0.00 0.00 37.15 3.85
4682 5317 4.693566 TCGTATTGGGACTTGAATGTGTTC 59.306 41.667 0.00 0.00 34.85 3.18
4683 5318 4.647611 TCGTATTGGGACTTGAATGTGTT 58.352 39.130 0.00 0.00 0.00 3.32
4684 5319 4.280436 TCGTATTGGGACTTGAATGTGT 57.720 40.909 0.00 0.00 0.00 3.72
4685 5320 5.118990 AGATCGTATTGGGACTTGAATGTG 58.881 41.667 0.00 0.00 0.00 3.21
4686 5321 5.359194 AGATCGTATTGGGACTTGAATGT 57.641 39.130 0.00 0.00 0.00 2.71
4687 5322 4.752101 GGAGATCGTATTGGGACTTGAATG 59.248 45.833 0.00 0.00 0.00 2.67
4692 5327 5.780282 TCATATGGAGATCGTATTGGGACTT 59.220 40.000 2.13 0.00 0.00 3.01
4694 5329 5.661056 TCATATGGAGATCGTATTGGGAC 57.339 43.478 2.13 0.00 0.00 4.46
4696 5331 5.187772 TCCTTCATATGGAGATCGTATTGGG 59.812 44.000 13.01 0.00 0.00 4.12
4698 5333 6.257411 GCATCCTTCATATGGAGATCGTATTG 59.743 42.308 13.01 1.08 36.99 1.90
4702 5337 3.580022 TGCATCCTTCATATGGAGATCGT 59.420 43.478 13.01 0.00 36.99 3.73
4704 5339 5.742063 TCATGCATCCTTCATATGGAGATC 58.258 41.667 13.01 0.00 36.99 2.75
4705 5340 5.774102 TCATGCATCCTTCATATGGAGAT 57.226 39.130 13.01 5.06 36.99 2.75
4706 5341 5.311265 GTTCATGCATCCTTCATATGGAGA 58.689 41.667 13.01 2.81 36.99 3.71
4708 5343 4.141205 TGGTTCATGCATCCTTCATATGGA 60.141 41.667 0.00 0.00 38.06 3.41
4709 5344 4.146564 TGGTTCATGCATCCTTCATATGG 58.853 43.478 0.00 0.00 0.00 2.74
4710 5345 5.067954 TCTGGTTCATGCATCCTTCATATG 58.932 41.667 0.00 0.00 0.00 1.78
4712 5347 4.776435 TCTGGTTCATGCATCCTTCATA 57.224 40.909 0.00 0.00 0.00 2.15
4713 5348 3.657398 TCTGGTTCATGCATCCTTCAT 57.343 42.857 0.00 0.00 0.00 2.57
4714 5349 3.284617 CATCTGGTTCATGCATCCTTCA 58.715 45.455 0.00 0.00 0.00 3.02
4715 5350 2.034305 GCATCTGGTTCATGCATCCTTC 59.966 50.000 0.00 0.00 45.19 3.46
4722 5357 0.744874 ATGCAGCATCTGGTTCATGC 59.255 50.000 0.52 0.00 46.05 4.06
4723 5358 2.688446 AGAATGCAGCATCTGGTTCATG 59.312 45.455 8.77 0.00 30.44 3.07
4724 5359 2.688446 CAGAATGCAGCATCTGGTTCAT 59.312 45.455 19.44 0.36 31.18 2.57
4750 5407 1.147191 ACTCCTCCAGGTCTGTACACA 59.853 52.381 0.00 0.00 36.34 3.72
4755 5412 0.323542 CGGTACTCCTCCAGGTCTGT 60.324 60.000 0.00 0.00 36.34 3.41
4908 5620 4.232188 AGAAGTTCATCATCATGGCAGT 57.768 40.909 5.50 0.00 0.00 4.40
4917 5629 4.337555 GGCATTGCAGTAGAAGTTCATCAT 59.662 41.667 11.39 0.00 0.00 2.45
4978 5690 0.392706 TCCGATATCTGCAACGCCAT 59.607 50.000 0.34 0.00 0.00 4.40
4982 5704 2.223829 ACCTTCTCCGATATCTGCAACG 60.224 50.000 0.34 0.00 0.00 4.10
4984 5706 3.031013 TCACCTTCTCCGATATCTGCAA 58.969 45.455 0.34 0.00 0.00 4.08
5231 8857 1.688772 CAGGATGAAGAAGGGCATGG 58.311 55.000 0.00 0.00 39.69 3.66
5328 8954 0.326238 TCCCCGGGTAGAGCTTGATT 60.326 55.000 21.85 0.00 0.00 2.57
5376 9002 0.036952 CCAGCTCCACATTGTCGTCT 60.037 55.000 0.00 0.00 0.00 4.18
5598 9224 8.168626 GCTTCTTTTTCCTTACAAAAACAGTTG 58.831 33.333 0.00 0.00 32.88 3.16
5610 9236 5.316167 TCATCTGCTGCTTCTTTTTCCTTA 58.684 37.500 0.00 0.00 0.00 2.69
5684 9310 4.723309 AGAACTTCAGAGTGGAGCAAAAT 58.277 39.130 0.00 0.00 35.91 1.82
5717 9343 2.427453 TCCAGGAAGCTAATGTCTCGTC 59.573 50.000 0.00 0.00 0.00 4.20
5718 9344 2.428890 CTCCAGGAAGCTAATGTCTCGT 59.571 50.000 0.00 0.00 0.00 4.18
5719 9345 2.801342 GCTCCAGGAAGCTAATGTCTCG 60.801 54.545 0.00 0.00 39.27 4.04
5724 9350 1.307097 GCTGCTCCAGGAAGCTAATG 58.693 55.000 5.94 0.00 43.24 1.90
5737 9363 1.078637 TGCATCAGTCCAGCTGCTC 60.079 57.895 8.66 3.04 44.66 4.26
5747 9373 5.163530 TGTTGTTTCAGAAATGTGCATCAGT 60.164 36.000 0.00 0.00 0.00 3.41
5748 9374 5.283294 TGTTGTTTCAGAAATGTGCATCAG 58.717 37.500 0.00 0.00 0.00 2.90
5749 9375 5.259832 TGTTGTTTCAGAAATGTGCATCA 57.740 34.783 0.00 0.00 0.00 3.07
5882 9514 0.810823 TTTGTCGTCGCCTTTTCCGT 60.811 50.000 0.00 0.00 0.00 4.69
5987 9620 3.092301 AGCTTGCTTCTTGGTTAATCCC 58.908 45.455 0.00 0.00 34.77 3.85
6084 9717 2.223971 GGATCTTCGGCGACCAAGATAA 60.224 50.000 19.32 0.00 39.09 1.75
6432 10071 5.934402 TTGGTAGGTCTTCTCTAACCATC 57.066 43.478 0.00 0.00 38.06 3.51
6444 10083 4.618920 ACGTTTCTGATTTGGTAGGTCT 57.381 40.909 0.00 0.00 0.00 3.85
6557 10201 8.812972 TGTAAGCTTCCTCTTATTCTCAAGTAA 58.187 33.333 0.00 0.00 31.92 2.24
6559 10203 7.038658 ACTGTAAGCTTCCTCTTATTCTCAAGT 60.039 37.037 0.00 0.00 37.60 3.16
6560 10204 7.327214 ACTGTAAGCTTCCTCTTATTCTCAAG 58.673 38.462 0.00 0.00 37.60 3.02
6561 10205 7.246171 ACTGTAAGCTTCCTCTTATTCTCAA 57.754 36.000 0.00 0.00 37.60 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.