Multiple sequence alignment - TraesCS1D01G230600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G230600 chr1D 100.000 3188 0 0 1 3188 318721181 318724368 0.000000e+00 5888.0
1 TraesCS1D01G230600 chr1D 87.218 1416 130 28 899 2291 318498450 318497063 0.000000e+00 1565.0
2 TraesCS1D01G230600 chr1D 88.747 471 42 5 1 461 3287204 3287673 1.660000e-157 566.0
3 TraesCS1D01G230600 chr1D 87.284 464 54 4 1 461 443450149 443449688 2.820000e-145 525.0
4 TraesCS1D01G230600 chr1A 92.073 2523 105 53 714 3188 405093225 405090750 0.000000e+00 3463.0
5 TraesCS1D01G230600 chr1A 87.094 1418 125 31 899 2291 399826706 399825322 0.000000e+00 1552.0
6 TraesCS1D01G230600 chr1B 92.632 2321 114 29 900 3188 431032634 431034929 0.000000e+00 3286.0
7 TraesCS1D01G230600 chr1B 86.540 1419 137 29 897 2291 430618440 430617052 0.000000e+00 1513.0
8 TraesCS1D01G230600 chr1B 88.866 494 43 6 1 486 671420383 671420872 5.890000e-167 597.0
9 TraesCS1D01G230600 chr1B 88.129 497 46 7 1 486 671298338 671298832 2.130000e-161 579.0
10 TraesCS1D01G230600 chr1B 87.928 497 47 7 1 486 671370375 671370869 9.920000e-160 573.0
11 TraesCS1D01G230600 chrUn 88.129 497 46 7 1 486 395367228 395367722 2.130000e-161 579.0
12 TraesCS1D01G230600 chr5D 87.339 466 53 6 1 461 79116416 79116880 2.180000e-146 529.0
13 TraesCS1D01G230600 chr2B 87.207 469 52 5 1 461 695986263 695986731 7.830000e-146 527.0
14 TraesCS1D01G230600 chr2B 87.179 468 52 6 1 461 695919027 695919493 2.820000e-145 525.0
15 TraesCS1D01G230600 chr3A 82.031 128 14 5 539 666 283109912 283109794 2.020000e-17 100.0
16 TraesCS1D01G230600 chr4D 86.567 67 9 0 545 611 179308979 179309045 1.230000e-09 75.0
17 TraesCS1D01G230600 chr7B 96.970 33 1 0 616 648 479490786 479490818 4.440000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G230600 chr1D 318721181 318724368 3187 False 5888 5888 100.000 1 3188 1 chr1D.!!$F2 3187
1 TraesCS1D01G230600 chr1D 318497063 318498450 1387 True 1565 1565 87.218 899 2291 1 chr1D.!!$R1 1392
2 TraesCS1D01G230600 chr1A 405090750 405093225 2475 True 3463 3463 92.073 714 3188 1 chr1A.!!$R2 2474
3 TraesCS1D01G230600 chr1A 399825322 399826706 1384 True 1552 1552 87.094 899 2291 1 chr1A.!!$R1 1392
4 TraesCS1D01G230600 chr1B 431032634 431034929 2295 False 3286 3286 92.632 900 3188 1 chr1B.!!$F1 2288
5 TraesCS1D01G230600 chr1B 430617052 430618440 1388 True 1513 1513 86.540 897 2291 1 chr1B.!!$R1 1394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.038159 ACTCGAAAGCTAAGCGTGCT 60.038 50.0 0.00 0.00 43.32 4.40 F
374 375 0.100861 CGGGACTAAAGGTCGAGCTC 59.899 60.0 18.90 2.73 45.35 4.09 F
1209 1240 0.248990 ATGCACAACGTTGGCAACTG 60.249 50.0 32.95 23.15 37.70 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1221 1252 0.673956 GGCTTTGGACGAGAGGAACC 60.674 60.000 0.00 0.0 0.00 3.62 R
1316 1354 1.284982 CCAGTGTTTGCTCGTCTCCG 61.285 60.000 0.00 0.0 0.00 4.63 R
2726 2823 1.754745 GGGTGAGCTCCACTTGACA 59.245 57.895 12.15 0.0 45.03 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.893305 AAGAATAATAGTTTCAAACTCAAACGG 57.107 29.630 5.92 0.00 41.77 4.44
35 36 9.063615 AGAATAATAGTTTCAAACTCAAACGGT 57.936 29.630 5.92 0.00 41.77 4.83
36 37 9.113876 GAATAATAGTTTCAAACTCAAACGGTG 57.886 33.333 5.92 0.00 41.77 4.94
37 38 6.445357 AATAGTTTCAAACTCAAACGGTGT 57.555 33.333 5.92 0.00 41.77 4.16
38 39 7.556733 AATAGTTTCAAACTCAAACGGTGTA 57.443 32.000 5.92 0.00 41.77 2.90
39 40 5.883503 AGTTTCAAACTCAAACGGTGTAA 57.116 34.783 0.00 0.00 37.02 2.41
40 41 5.875930 AGTTTCAAACTCAAACGGTGTAAG 58.124 37.500 0.00 0.00 37.02 2.34
41 42 4.886247 TTCAAACTCAAACGGTGTAAGG 57.114 40.909 0.00 0.00 0.00 2.69
42 43 3.876341 TCAAACTCAAACGGTGTAAGGT 58.124 40.909 0.00 0.00 0.00 3.50
43 44 3.623960 TCAAACTCAAACGGTGTAAGGTG 59.376 43.478 0.00 0.00 0.00 4.00
44 45 2.994186 ACTCAAACGGTGTAAGGTGT 57.006 45.000 0.00 0.00 0.00 4.16
45 46 2.557317 ACTCAAACGGTGTAAGGTGTG 58.443 47.619 0.00 0.00 0.00 3.82
46 47 2.168936 ACTCAAACGGTGTAAGGTGTGA 59.831 45.455 0.00 0.00 0.00 3.58
47 48 2.542595 CTCAAACGGTGTAAGGTGTGAC 59.457 50.000 0.00 0.00 0.00 3.67
48 49 2.168936 TCAAACGGTGTAAGGTGTGACT 59.831 45.455 0.00 0.00 0.00 3.41
49 50 2.940410 CAAACGGTGTAAGGTGTGACTT 59.060 45.455 0.00 0.00 34.52 3.01
50 51 2.521105 ACGGTGTAAGGTGTGACTTC 57.479 50.000 0.00 0.00 32.02 3.01
51 52 1.758280 ACGGTGTAAGGTGTGACTTCA 59.242 47.619 0.00 0.00 32.02 3.02
52 53 2.367567 ACGGTGTAAGGTGTGACTTCAT 59.632 45.455 0.00 0.00 32.02 2.57
53 54 3.575256 ACGGTGTAAGGTGTGACTTCATA 59.425 43.478 0.00 0.00 32.02 2.15
54 55 3.924686 CGGTGTAAGGTGTGACTTCATAC 59.075 47.826 0.00 0.00 37.27 2.39
55 56 4.321750 CGGTGTAAGGTGTGACTTCATACT 60.322 45.833 6.14 0.00 37.97 2.12
56 57 5.169295 GGTGTAAGGTGTGACTTCATACTC 58.831 45.833 6.14 0.00 37.97 2.59
57 58 5.279306 GGTGTAAGGTGTGACTTCATACTCA 60.279 44.000 6.14 0.12 37.97 3.41
58 59 6.220930 GTGTAAGGTGTGACTTCATACTCAA 58.779 40.000 6.14 0.00 37.97 3.02
59 60 6.145696 GTGTAAGGTGTGACTTCATACTCAAC 59.854 42.308 6.14 3.36 37.97 3.18
60 61 5.552870 AAGGTGTGACTTCATACTCAACT 57.447 39.130 6.14 0.00 37.97 3.16
61 62 5.552870 AGGTGTGACTTCATACTCAACTT 57.447 39.130 6.14 0.00 37.97 2.66
62 63 5.542779 AGGTGTGACTTCATACTCAACTTC 58.457 41.667 6.14 0.00 37.97 3.01
63 64 5.070446 AGGTGTGACTTCATACTCAACTTCA 59.930 40.000 6.14 0.00 37.97 3.02
64 65 5.758296 GGTGTGACTTCATACTCAACTTCAA 59.242 40.000 6.14 0.00 37.97 2.69
65 66 6.292919 GGTGTGACTTCATACTCAACTTCAAC 60.293 42.308 6.14 0.00 37.97 3.18
66 67 6.480320 GTGTGACTTCATACTCAACTTCAACT 59.520 38.462 0.00 0.00 35.46 3.16
67 68 6.701841 TGTGACTTCATACTCAACTTCAACTC 59.298 38.462 0.00 0.00 0.00 3.01
68 69 6.701841 GTGACTTCATACTCAACTTCAACTCA 59.298 38.462 0.00 0.00 0.00 3.41
69 70 7.386299 GTGACTTCATACTCAACTTCAACTCAT 59.614 37.037 0.00 0.00 0.00 2.90
70 71 8.585018 TGACTTCATACTCAACTTCAACTCATA 58.415 33.333 0.00 0.00 0.00 2.15
71 72 9.424319 GACTTCATACTCAACTTCAACTCATAA 57.576 33.333 0.00 0.00 0.00 1.90
72 73 9.429359 ACTTCATACTCAACTTCAACTCATAAG 57.571 33.333 0.00 0.00 0.00 1.73
73 74 8.777865 TTCATACTCAACTTCAACTCATAAGG 57.222 34.615 0.00 0.00 0.00 2.69
74 75 7.331026 TCATACTCAACTTCAACTCATAAGGG 58.669 38.462 0.00 0.00 0.00 3.95
75 76 5.568620 ACTCAACTTCAACTCATAAGGGT 57.431 39.130 0.00 0.00 0.00 4.34
76 77 5.308825 ACTCAACTTCAACTCATAAGGGTG 58.691 41.667 0.00 0.00 0.00 4.61
77 78 5.071788 ACTCAACTTCAACTCATAAGGGTGA 59.928 40.000 0.00 0.00 0.00 4.02
78 79 5.935945 TCAACTTCAACTCATAAGGGTGAA 58.064 37.500 0.00 0.00 32.71 3.18
79 80 6.542821 TCAACTTCAACTCATAAGGGTGAAT 58.457 36.000 0.00 0.00 33.05 2.57
80 81 7.685481 TCAACTTCAACTCATAAGGGTGAATA 58.315 34.615 0.00 0.00 33.05 1.75
81 82 7.824289 TCAACTTCAACTCATAAGGGTGAATAG 59.176 37.037 0.00 0.00 33.05 1.73
82 83 6.653989 ACTTCAACTCATAAGGGTGAATAGG 58.346 40.000 0.00 0.00 33.05 2.57
83 84 6.443849 ACTTCAACTCATAAGGGTGAATAGGA 59.556 38.462 0.00 0.00 33.05 2.94
84 85 7.127955 ACTTCAACTCATAAGGGTGAATAGGAT 59.872 37.037 0.00 0.00 33.05 3.24
85 86 7.451731 TCAACTCATAAGGGTGAATAGGATT 57.548 36.000 0.00 0.00 0.00 3.01
86 87 7.282585 TCAACTCATAAGGGTGAATAGGATTG 58.717 38.462 0.00 0.00 0.00 2.67
87 88 7.127186 TCAACTCATAAGGGTGAATAGGATTGA 59.873 37.037 0.00 0.00 0.00 2.57
88 89 6.831976 ACTCATAAGGGTGAATAGGATTGAC 58.168 40.000 0.00 0.00 0.00 3.18
89 90 6.386927 ACTCATAAGGGTGAATAGGATTGACA 59.613 38.462 0.00 0.00 0.00 3.58
90 91 6.830912 TCATAAGGGTGAATAGGATTGACAG 58.169 40.000 0.00 0.00 0.00 3.51
91 92 3.567478 AGGGTGAATAGGATTGACAGC 57.433 47.619 0.00 0.00 0.00 4.40
92 93 3.118531 AGGGTGAATAGGATTGACAGCT 58.881 45.455 0.00 0.00 0.00 4.24
93 94 3.525199 AGGGTGAATAGGATTGACAGCTT 59.475 43.478 0.00 0.00 0.00 3.74
94 95 4.721776 AGGGTGAATAGGATTGACAGCTTA 59.278 41.667 0.00 0.00 0.00 3.09
95 96 4.816925 GGGTGAATAGGATTGACAGCTTAC 59.183 45.833 0.00 0.00 0.00 2.34
96 97 5.396884 GGGTGAATAGGATTGACAGCTTACT 60.397 44.000 0.00 0.00 0.00 2.24
97 98 6.183360 GGGTGAATAGGATTGACAGCTTACTA 60.183 42.308 0.00 0.00 0.00 1.82
98 99 7.445945 GGTGAATAGGATTGACAGCTTACTAT 58.554 38.462 0.00 0.00 0.00 2.12
99 100 7.934120 GGTGAATAGGATTGACAGCTTACTATT 59.066 37.037 0.27 0.27 33.71 1.73
100 101 8.768955 GTGAATAGGATTGACAGCTTACTATTG 58.231 37.037 4.83 0.00 31.85 1.90
101 102 8.486210 TGAATAGGATTGACAGCTTACTATTGT 58.514 33.333 4.83 0.00 31.85 2.71
102 103 8.894768 AATAGGATTGACAGCTTACTATTGTC 57.105 34.615 0.00 0.00 41.15 3.18
103 104 6.299805 AGGATTGACAGCTTACTATTGTCA 57.700 37.500 2.68 2.68 46.71 3.58
107 108 5.738619 TGACAGCTTACTATTGTCAGGAA 57.261 39.130 2.68 0.00 44.39 3.36
108 109 6.109156 TGACAGCTTACTATTGTCAGGAAA 57.891 37.500 2.68 0.00 44.39 3.13
109 110 6.530120 TGACAGCTTACTATTGTCAGGAAAA 58.470 36.000 2.68 0.00 44.39 2.29
110 111 6.426937 TGACAGCTTACTATTGTCAGGAAAAC 59.573 38.462 2.68 0.00 44.39 2.43
111 112 6.296026 ACAGCTTACTATTGTCAGGAAAACA 58.704 36.000 0.00 0.00 0.00 2.83
112 113 6.770785 ACAGCTTACTATTGTCAGGAAAACAA 59.229 34.615 0.00 0.00 40.63 2.83
113 114 7.078228 CAGCTTACTATTGTCAGGAAAACAAC 58.922 38.462 0.00 0.00 39.29 3.32
114 115 6.770785 AGCTTACTATTGTCAGGAAAACAACA 59.229 34.615 0.00 0.00 39.29 3.33
115 116 7.284489 AGCTTACTATTGTCAGGAAAACAACAA 59.716 33.333 0.00 0.00 39.29 2.83
116 117 7.591426 GCTTACTATTGTCAGGAAAACAACAAG 59.409 37.037 0.00 0.00 39.29 3.16
117 118 8.514330 TTACTATTGTCAGGAAAACAACAAGT 57.486 30.769 9.43 9.43 39.29 3.16
118 119 6.795399 ACTATTGTCAGGAAAACAACAAGTG 58.205 36.000 0.00 0.00 39.29 3.16
119 120 3.502191 TGTCAGGAAAACAACAAGTGC 57.498 42.857 0.00 0.00 0.00 4.40
120 121 2.822561 TGTCAGGAAAACAACAAGTGCA 59.177 40.909 0.00 0.00 0.00 4.57
121 122 3.119531 TGTCAGGAAAACAACAAGTGCAG 60.120 43.478 0.00 0.00 0.00 4.41
122 123 3.128589 GTCAGGAAAACAACAAGTGCAGA 59.871 43.478 0.00 0.00 0.00 4.26
123 124 3.128589 TCAGGAAAACAACAAGTGCAGAC 59.871 43.478 0.00 0.00 0.00 3.51
124 125 3.129287 CAGGAAAACAACAAGTGCAGACT 59.871 43.478 0.00 0.00 0.00 3.24
125 126 3.763897 AGGAAAACAACAAGTGCAGACTT 59.236 39.130 0.00 0.00 43.63 3.01
147 148 4.821940 TGGAAACAAGGGGGAATAAAACT 58.178 39.130 0.00 0.00 37.44 2.66
148 149 4.836175 TGGAAACAAGGGGGAATAAAACTC 59.164 41.667 0.00 0.00 37.44 3.01
149 150 4.082408 GGAAACAAGGGGGAATAAAACTCG 60.082 45.833 0.00 0.00 0.00 4.18
150 151 4.376225 AACAAGGGGGAATAAAACTCGA 57.624 40.909 0.00 0.00 0.00 4.04
151 152 4.376225 ACAAGGGGGAATAAAACTCGAA 57.624 40.909 0.00 0.00 0.00 3.71
152 153 4.732065 ACAAGGGGGAATAAAACTCGAAA 58.268 39.130 0.00 0.00 0.00 3.46
153 154 4.765339 ACAAGGGGGAATAAAACTCGAAAG 59.235 41.667 0.00 0.00 0.00 2.62
154 155 3.353557 AGGGGGAATAAAACTCGAAAGC 58.646 45.455 0.00 0.00 0.00 3.51
155 156 3.010250 AGGGGGAATAAAACTCGAAAGCT 59.990 43.478 0.00 0.00 0.00 3.74
156 157 4.226620 AGGGGGAATAAAACTCGAAAGCTA 59.773 41.667 0.00 0.00 0.00 3.32
157 158 4.945543 GGGGGAATAAAACTCGAAAGCTAA 59.054 41.667 0.00 0.00 0.00 3.09
158 159 5.066117 GGGGGAATAAAACTCGAAAGCTAAG 59.934 44.000 0.00 0.00 0.00 2.18
159 160 5.448768 GGGGAATAAAACTCGAAAGCTAAGC 60.449 44.000 0.00 0.00 0.00 3.09
160 161 5.256352 GGAATAAAACTCGAAAGCTAAGCG 58.744 41.667 0.00 0.00 0.00 4.68
161 162 5.163884 GGAATAAAACTCGAAAGCTAAGCGT 60.164 40.000 0.00 0.00 0.00 5.07
162 163 3.521524 AAAACTCGAAAGCTAAGCGTG 57.478 42.857 0.00 0.00 0.00 5.34
163 164 0.790814 AACTCGAAAGCTAAGCGTGC 59.209 50.000 0.00 0.00 0.00 5.34
164 165 0.038159 ACTCGAAAGCTAAGCGTGCT 60.038 50.000 0.00 0.00 43.32 4.40
173 174 2.890808 CTAAGCGTGCTTAGGATGGA 57.109 50.000 26.55 2.83 46.99 3.41
174 175 2.748605 CTAAGCGTGCTTAGGATGGAG 58.251 52.381 26.55 8.42 46.99 3.86
175 176 0.905357 AAGCGTGCTTAGGATGGAGT 59.095 50.000 5.07 0.00 34.05 3.85
176 177 1.776662 AGCGTGCTTAGGATGGAGTA 58.223 50.000 0.00 0.00 0.00 2.59
177 178 1.683917 AGCGTGCTTAGGATGGAGTAG 59.316 52.381 0.00 0.00 0.00 2.57
178 179 1.409427 GCGTGCTTAGGATGGAGTAGT 59.591 52.381 0.00 0.00 0.00 2.73
179 180 2.799917 GCGTGCTTAGGATGGAGTAGTG 60.800 54.545 0.00 0.00 0.00 2.74
180 181 2.688446 CGTGCTTAGGATGGAGTAGTGA 59.312 50.000 0.00 0.00 0.00 3.41
181 182 3.243234 CGTGCTTAGGATGGAGTAGTGAG 60.243 52.174 0.00 0.00 0.00 3.51
182 183 3.954904 GTGCTTAGGATGGAGTAGTGAGA 59.045 47.826 0.00 0.00 0.00 3.27
183 184 4.402793 GTGCTTAGGATGGAGTAGTGAGAA 59.597 45.833 0.00 0.00 0.00 2.87
184 185 5.069781 GTGCTTAGGATGGAGTAGTGAGAAT 59.930 44.000 0.00 0.00 0.00 2.40
185 186 6.265649 GTGCTTAGGATGGAGTAGTGAGAATA 59.734 42.308 0.00 0.00 0.00 1.75
186 187 7.013220 TGCTTAGGATGGAGTAGTGAGAATAT 58.987 38.462 0.00 0.00 0.00 1.28
187 188 7.039434 TGCTTAGGATGGAGTAGTGAGAATATG 60.039 40.741 0.00 0.00 0.00 1.78
188 189 7.578571 GCTTAGGATGGAGTAGTGAGAATATGG 60.579 44.444 0.00 0.00 0.00 2.74
189 190 5.090139 AGGATGGAGTAGTGAGAATATGGG 58.910 45.833 0.00 0.00 0.00 4.00
190 191 4.841246 GGATGGAGTAGTGAGAATATGGGT 59.159 45.833 0.00 0.00 0.00 4.51
191 192 5.279708 GGATGGAGTAGTGAGAATATGGGTG 60.280 48.000 0.00 0.00 0.00 4.61
192 193 4.878968 TGGAGTAGTGAGAATATGGGTGA 58.121 43.478 0.00 0.00 0.00 4.02
193 194 4.649674 TGGAGTAGTGAGAATATGGGTGAC 59.350 45.833 0.00 0.00 0.00 3.67
210 211 4.196965 CCGGCCGGAAAGTTAGAC 57.803 61.111 41.82 0.00 37.50 2.59
211 212 1.808390 CCGGCCGGAAAGTTAGACG 60.808 63.158 41.82 6.81 37.50 4.18
212 213 1.213537 CGGCCGGAAAGTTAGACGA 59.786 57.895 20.10 0.00 0.00 4.20
213 214 0.179119 CGGCCGGAAAGTTAGACGAT 60.179 55.000 20.10 0.00 0.00 3.73
214 215 1.738030 CGGCCGGAAAGTTAGACGATT 60.738 52.381 20.10 0.00 0.00 3.34
215 216 2.353323 GGCCGGAAAGTTAGACGATTT 58.647 47.619 5.05 0.00 0.00 2.17
216 217 2.095372 GGCCGGAAAGTTAGACGATTTG 59.905 50.000 5.05 0.00 0.00 2.32
217 218 2.095372 GCCGGAAAGTTAGACGATTTGG 59.905 50.000 5.05 0.00 0.00 3.28
218 219 3.592059 CCGGAAAGTTAGACGATTTGGA 58.408 45.455 0.00 0.00 0.00 3.53
219 220 3.998341 CCGGAAAGTTAGACGATTTGGAA 59.002 43.478 0.00 0.00 0.00 3.53
220 221 4.634443 CCGGAAAGTTAGACGATTTGGAAT 59.366 41.667 0.00 0.00 0.00 3.01
221 222 5.447279 CCGGAAAGTTAGACGATTTGGAATG 60.447 44.000 0.00 0.00 0.00 2.67
222 223 5.350365 CGGAAAGTTAGACGATTTGGAATGA 59.650 40.000 0.00 0.00 0.00 2.57
223 224 6.037172 CGGAAAGTTAGACGATTTGGAATGAT 59.963 38.462 0.00 0.00 0.00 2.45
224 225 7.189512 GGAAAGTTAGACGATTTGGAATGATG 58.810 38.462 0.00 0.00 0.00 3.07
225 226 7.065803 GGAAAGTTAGACGATTTGGAATGATGA 59.934 37.037 0.00 0.00 0.00 2.92
226 227 7.545362 AAGTTAGACGATTTGGAATGATGAG 57.455 36.000 0.00 0.00 0.00 2.90
227 228 6.051717 AGTTAGACGATTTGGAATGATGAGG 58.948 40.000 0.00 0.00 0.00 3.86
228 229 3.813443 AGACGATTTGGAATGATGAGGG 58.187 45.455 0.00 0.00 0.00 4.30
229 230 2.880890 GACGATTTGGAATGATGAGGGG 59.119 50.000 0.00 0.00 0.00 4.79
230 231 2.242196 ACGATTTGGAATGATGAGGGGT 59.758 45.455 0.00 0.00 0.00 4.95
231 232 2.620115 CGATTTGGAATGATGAGGGGTG 59.380 50.000 0.00 0.00 0.00 4.61
232 233 3.685265 CGATTTGGAATGATGAGGGGTGA 60.685 47.826 0.00 0.00 0.00 4.02
233 234 4.477249 GATTTGGAATGATGAGGGGTGAT 58.523 43.478 0.00 0.00 0.00 3.06
234 235 4.335735 TTTGGAATGATGAGGGGTGATT 57.664 40.909 0.00 0.00 0.00 2.57
235 236 5.464588 TTTGGAATGATGAGGGGTGATTA 57.535 39.130 0.00 0.00 0.00 1.75
236 237 4.712051 TGGAATGATGAGGGGTGATTAG 57.288 45.455 0.00 0.00 0.00 1.73
237 238 4.306391 TGGAATGATGAGGGGTGATTAGA 58.694 43.478 0.00 0.00 0.00 2.10
238 239 4.349048 TGGAATGATGAGGGGTGATTAGAG 59.651 45.833 0.00 0.00 0.00 2.43
239 240 4.594920 GGAATGATGAGGGGTGATTAGAGA 59.405 45.833 0.00 0.00 0.00 3.10
240 241 5.250313 GGAATGATGAGGGGTGATTAGAGAT 59.750 44.000 0.00 0.00 0.00 2.75
241 242 6.240118 GGAATGATGAGGGGTGATTAGAGATT 60.240 42.308 0.00 0.00 0.00 2.40
242 243 7.038017 GGAATGATGAGGGGTGATTAGAGATTA 60.038 40.741 0.00 0.00 0.00 1.75
243 244 6.924913 TGATGAGGGGTGATTAGAGATTAG 57.075 41.667 0.00 0.00 0.00 1.73
244 245 6.624297 TGATGAGGGGTGATTAGAGATTAGA 58.376 40.000 0.00 0.00 0.00 2.10
245 246 6.723515 TGATGAGGGGTGATTAGAGATTAGAG 59.276 42.308 0.00 0.00 0.00 2.43
246 247 6.281190 TGAGGGGTGATTAGAGATTAGAGA 57.719 41.667 0.00 0.00 0.00 3.10
247 248 6.868826 TGAGGGGTGATTAGAGATTAGAGAT 58.131 40.000 0.00 0.00 0.00 2.75
248 249 7.309091 TGAGGGGTGATTAGAGATTAGAGATT 58.691 38.462 0.00 0.00 0.00 2.40
249 250 8.456940 TGAGGGGTGATTAGAGATTAGAGATTA 58.543 37.037 0.00 0.00 0.00 1.75
250 251 9.315363 GAGGGGTGATTAGAGATTAGAGATTAA 57.685 37.037 0.00 0.00 0.00 1.40
251 252 9.676129 AGGGGTGATTAGAGATTAGAGATTAAA 57.324 33.333 0.00 0.00 0.00 1.52
261 262 9.545105 AGAGATTAGAGATTAAATTGAGCAGTG 57.455 33.333 0.00 0.00 0.00 3.66
262 263 9.539825 GAGATTAGAGATTAAATTGAGCAGTGA 57.460 33.333 0.00 0.00 0.00 3.41
265 266 9.842775 ATTAGAGATTAAATTGAGCAGTGATGA 57.157 29.630 0.00 0.00 0.00 2.92
266 267 7.789273 AGAGATTAAATTGAGCAGTGATGAG 57.211 36.000 0.00 0.00 0.00 2.90
267 268 6.766944 AGAGATTAAATTGAGCAGTGATGAGG 59.233 38.462 0.00 0.00 0.00 3.86
268 269 5.826737 AGATTAAATTGAGCAGTGATGAGGG 59.173 40.000 0.00 0.00 0.00 4.30
269 270 2.431954 AATTGAGCAGTGATGAGGGG 57.568 50.000 0.00 0.00 0.00 4.79
270 271 1.293062 ATTGAGCAGTGATGAGGGGT 58.707 50.000 0.00 0.00 0.00 4.95
271 272 0.325933 TTGAGCAGTGATGAGGGGTG 59.674 55.000 0.00 0.00 0.00 4.61
272 273 0.545071 TGAGCAGTGATGAGGGGTGA 60.545 55.000 0.00 0.00 0.00 4.02
273 274 0.835941 GAGCAGTGATGAGGGGTGAT 59.164 55.000 0.00 0.00 0.00 3.06
274 275 1.211457 GAGCAGTGATGAGGGGTGATT 59.789 52.381 0.00 0.00 0.00 2.57
275 276 2.435805 GAGCAGTGATGAGGGGTGATTA 59.564 50.000 0.00 0.00 0.00 1.75
276 277 2.437281 AGCAGTGATGAGGGGTGATTAG 59.563 50.000 0.00 0.00 0.00 1.73
277 278 2.435805 GCAGTGATGAGGGGTGATTAGA 59.564 50.000 0.00 0.00 0.00 2.10
278 279 3.494048 GCAGTGATGAGGGGTGATTAGAG 60.494 52.174 0.00 0.00 0.00 2.43
279 280 3.963374 CAGTGATGAGGGGTGATTAGAGA 59.037 47.826 0.00 0.00 0.00 3.10
280 281 4.592351 CAGTGATGAGGGGTGATTAGAGAT 59.408 45.833 0.00 0.00 0.00 2.75
281 282 5.071519 CAGTGATGAGGGGTGATTAGAGATT 59.928 44.000 0.00 0.00 0.00 2.40
282 283 6.268617 CAGTGATGAGGGGTGATTAGAGATTA 59.731 42.308 0.00 0.00 0.00 1.75
283 284 6.846505 AGTGATGAGGGGTGATTAGAGATTAA 59.153 38.462 0.00 0.00 0.00 1.40
284 285 7.348274 AGTGATGAGGGGTGATTAGAGATTAAA 59.652 37.037 0.00 0.00 0.00 1.52
285 286 8.160106 GTGATGAGGGGTGATTAGAGATTAAAT 58.840 37.037 0.00 0.00 0.00 1.40
286 287 9.392506 TGATGAGGGGTGATTAGAGATTAAATA 57.607 33.333 0.00 0.00 0.00 1.40
344 345 5.959618 AAAATTCCTTTAGTCTCGGTTGG 57.040 39.130 0.00 0.00 0.00 3.77
345 346 4.635699 AATTCCTTTAGTCTCGGTTGGT 57.364 40.909 0.00 0.00 0.00 3.67
346 347 3.396260 TTCCTTTAGTCTCGGTTGGTG 57.604 47.619 0.00 0.00 0.00 4.17
347 348 2.322658 TCCTTTAGTCTCGGTTGGTGT 58.677 47.619 0.00 0.00 0.00 4.16
348 349 2.701951 TCCTTTAGTCTCGGTTGGTGTT 59.298 45.455 0.00 0.00 0.00 3.32
349 350 3.896888 TCCTTTAGTCTCGGTTGGTGTTA 59.103 43.478 0.00 0.00 0.00 2.41
350 351 3.992427 CCTTTAGTCTCGGTTGGTGTTAC 59.008 47.826 0.00 0.00 0.00 2.50
351 352 3.665745 TTAGTCTCGGTTGGTGTTACC 57.334 47.619 0.00 0.00 39.22 2.85
360 361 4.384599 GGTGTTACCAACCGGGAC 57.615 61.111 6.32 0.00 38.42 4.46
361 362 1.756665 GGTGTTACCAACCGGGACT 59.243 57.895 6.32 0.00 38.42 3.85
362 363 0.975887 GGTGTTACCAACCGGGACTA 59.024 55.000 6.32 0.00 38.42 2.59
363 364 1.347378 GGTGTTACCAACCGGGACTAA 59.653 52.381 6.32 0.00 38.42 2.24
364 365 2.224499 GGTGTTACCAACCGGGACTAAA 60.224 50.000 6.32 0.00 38.42 1.85
365 366 3.069289 GTGTTACCAACCGGGACTAAAG 58.931 50.000 6.32 0.00 41.15 1.85
366 367 2.038820 TGTTACCAACCGGGACTAAAGG 59.961 50.000 6.32 0.00 41.15 3.11
367 368 2.028561 TACCAACCGGGACTAAAGGT 57.971 50.000 6.32 5.18 41.15 3.50
368 369 0.689055 ACCAACCGGGACTAAAGGTC 59.311 55.000 6.32 0.00 43.79 3.85
369 370 0.390735 CCAACCGGGACTAAAGGTCG 60.391 60.000 6.32 0.00 45.35 4.79
370 371 0.604578 CAACCGGGACTAAAGGTCGA 59.395 55.000 6.32 0.00 45.35 4.20
371 372 0.893447 AACCGGGACTAAAGGTCGAG 59.107 55.000 6.32 0.00 45.35 4.04
372 373 1.141234 CCGGGACTAAAGGTCGAGC 59.859 63.158 6.48 6.48 45.35 5.03
373 374 1.321074 CCGGGACTAAAGGTCGAGCT 61.321 60.000 12.24 12.24 45.35 4.09
374 375 0.100861 CGGGACTAAAGGTCGAGCTC 59.899 60.000 18.90 2.73 45.35 4.09
375 376 0.460722 GGGACTAAAGGTCGAGCTCC 59.539 60.000 18.90 14.07 45.35 4.70
376 377 1.183549 GGACTAAAGGTCGAGCTCCA 58.816 55.000 18.90 7.74 45.35 3.86
377 378 1.135333 GGACTAAAGGTCGAGCTCCAG 59.865 57.143 18.90 18.75 45.35 3.86
378 379 2.093106 GACTAAAGGTCGAGCTCCAGA 58.907 52.381 24.21 9.16 35.07 3.86
379 380 1.819903 ACTAAAGGTCGAGCTCCAGAC 59.180 52.381 24.21 10.57 36.70 3.51
380 381 1.819288 CTAAAGGTCGAGCTCCAGACA 59.181 52.381 18.90 0.00 39.01 3.41
381 382 0.605589 AAAGGTCGAGCTCCAGACAG 59.394 55.000 18.90 1.47 39.01 3.51
382 383 1.882989 AAGGTCGAGCTCCAGACAGC 61.883 60.000 18.90 6.90 39.01 4.40
383 384 2.202544 GTCGAGCTCCAGACAGCG 60.203 66.667 14.67 0.00 44.82 5.18
384 385 3.443925 TCGAGCTCCAGACAGCGG 61.444 66.667 8.47 0.00 44.82 5.52
386 387 4.828925 GAGCTCCAGACAGCGGCC 62.829 72.222 0.87 0.00 44.82 6.13
401 402 4.660938 GCCACGTGGAGGGCCTTT 62.661 66.667 38.30 0.00 44.53 3.11
402 403 3.074281 CCACGTGGAGGGCCTTTA 58.926 61.111 31.31 0.00 37.39 1.85
403 404 1.078426 CCACGTGGAGGGCCTTTAG 60.078 63.158 31.31 2.32 37.39 1.85
404 405 1.677552 CACGTGGAGGGCCTTTAGT 59.322 57.895 7.89 3.03 34.31 2.24
405 406 0.391263 CACGTGGAGGGCCTTTAGTC 60.391 60.000 7.89 0.00 34.31 2.59
406 407 1.221021 CGTGGAGGGCCTTTAGTCC 59.779 63.158 7.89 4.32 34.31 3.85
407 408 1.608154 GTGGAGGGCCTTTAGTCCC 59.392 63.158 7.89 3.10 42.94 4.46
411 412 3.084304 GGGCCTTTAGTCCCGGTT 58.916 61.111 0.84 0.00 32.00 4.44
412 413 1.077930 GGGCCTTTAGTCCCGGTTC 60.078 63.158 0.84 0.00 32.00 3.62
413 414 1.449070 GGCCTTTAGTCCCGGTTCG 60.449 63.158 0.00 0.00 0.00 3.95
414 415 1.294459 GCCTTTAGTCCCGGTTCGT 59.706 57.895 0.00 0.00 0.00 3.85
415 416 0.532115 GCCTTTAGTCCCGGTTCGTA 59.468 55.000 0.00 0.00 0.00 3.43
416 417 1.066929 GCCTTTAGTCCCGGTTCGTAA 60.067 52.381 0.00 0.00 0.00 3.18
417 418 2.610433 CCTTTAGTCCCGGTTCGTAAC 58.390 52.381 0.00 0.00 0.00 2.50
418 419 2.029110 CCTTTAGTCCCGGTTCGTAACA 60.029 50.000 0.00 0.00 0.00 2.41
419 420 2.723124 TTAGTCCCGGTTCGTAACAC 57.277 50.000 0.00 0.00 0.00 3.32
420 421 1.614996 TAGTCCCGGTTCGTAACACA 58.385 50.000 0.00 0.00 0.00 3.72
421 422 0.752054 AGTCCCGGTTCGTAACACAA 59.248 50.000 0.00 0.00 0.00 3.33
422 423 0.861185 GTCCCGGTTCGTAACACAAC 59.139 55.000 0.00 0.00 0.00 3.32
423 424 0.249826 TCCCGGTTCGTAACACAACC 60.250 55.000 0.00 0.00 39.04 3.77
426 427 2.237416 GGTTCGTAACACAACCGGG 58.763 57.895 6.32 0.00 33.01 5.73
427 428 0.249826 GGTTCGTAACACAACCGGGA 60.250 55.000 6.32 0.00 33.01 5.14
428 429 0.861185 GTTCGTAACACAACCGGGAC 59.139 55.000 6.32 0.00 0.00 4.46
429 430 0.752054 TTCGTAACACAACCGGGACT 59.248 50.000 6.32 0.00 0.00 3.85
430 431 1.614996 TCGTAACACAACCGGGACTA 58.385 50.000 6.32 0.00 0.00 2.59
431 432 1.541147 TCGTAACACAACCGGGACTAG 59.459 52.381 6.32 0.00 0.00 2.57
432 433 1.403249 CGTAACACAACCGGGACTAGG 60.403 57.143 6.32 0.00 0.00 3.02
433 434 1.066645 GTAACACAACCGGGACTAGGG 60.067 57.143 6.32 0.00 0.00 3.53
434 435 1.486145 AACACAACCGGGACTAGGGG 61.486 60.000 6.32 0.00 0.00 4.79
435 436 2.285144 ACAACCGGGACTAGGGGG 60.285 66.667 6.32 0.00 0.00 5.40
452 453 2.689771 GGGGGCCTTTAGTCCCGA 60.690 66.667 0.84 0.00 43.55 5.14
453 454 2.588439 GGGGCCTTTAGTCCCGAC 59.412 66.667 0.84 0.00 43.55 4.79
454 455 2.588439 GGGCCTTTAGTCCCGACC 59.412 66.667 0.84 0.00 32.00 4.79
455 456 2.588439 GGCCTTTAGTCCCGACCC 59.412 66.667 0.00 0.00 0.00 4.46
456 457 1.993948 GGCCTTTAGTCCCGACCCT 60.994 63.158 0.00 0.00 0.00 4.34
457 458 1.559965 GGCCTTTAGTCCCGACCCTT 61.560 60.000 0.00 0.00 0.00 3.95
458 459 0.327259 GCCTTTAGTCCCGACCCTTT 59.673 55.000 0.00 0.00 0.00 3.11
459 460 1.556451 GCCTTTAGTCCCGACCCTTTA 59.444 52.381 0.00 0.00 0.00 1.85
460 461 2.419713 GCCTTTAGTCCCGACCCTTTAG 60.420 54.545 0.00 0.00 0.00 1.85
461 462 2.169978 CCTTTAGTCCCGACCCTTTAGG 59.830 54.545 0.00 0.00 43.78 2.69
462 463 2.925966 TTAGTCCCGACCCTTTAGGA 57.074 50.000 0.00 0.00 39.89 2.94
463 464 3.409804 TTAGTCCCGACCCTTTAGGAT 57.590 47.619 0.00 0.00 39.89 3.24
464 465 1.790818 AGTCCCGACCCTTTAGGATC 58.209 55.000 0.00 0.00 39.89 3.36
465 466 1.291335 AGTCCCGACCCTTTAGGATCT 59.709 52.381 0.00 0.00 39.89 2.75
466 467 1.413077 GTCCCGACCCTTTAGGATCTG 59.587 57.143 0.00 0.00 39.89 2.90
467 468 1.007963 TCCCGACCCTTTAGGATCTGT 59.992 52.381 0.00 0.00 39.89 3.41
468 469 1.838077 CCCGACCCTTTAGGATCTGTT 59.162 52.381 0.00 0.00 39.89 3.16
469 470 2.238898 CCCGACCCTTTAGGATCTGTTT 59.761 50.000 0.00 0.00 39.89 2.83
470 471 3.308188 CCCGACCCTTTAGGATCTGTTTT 60.308 47.826 0.00 0.00 39.89 2.43
471 472 3.939592 CCGACCCTTTAGGATCTGTTTTC 59.060 47.826 0.00 0.00 39.89 2.29
472 473 4.323562 CCGACCCTTTAGGATCTGTTTTCT 60.324 45.833 0.00 0.00 39.89 2.52
473 474 5.105064 CCGACCCTTTAGGATCTGTTTTCTA 60.105 44.000 0.00 0.00 39.89 2.10
474 475 5.811100 CGACCCTTTAGGATCTGTTTTCTAC 59.189 44.000 0.00 0.00 39.89 2.59
475 476 6.351117 CGACCCTTTAGGATCTGTTTTCTACT 60.351 42.308 0.00 0.00 39.89 2.57
476 477 7.147949 CGACCCTTTAGGATCTGTTTTCTACTA 60.148 40.741 0.00 0.00 39.89 1.82
477 478 8.080363 ACCCTTTAGGATCTGTTTTCTACTAG 57.920 38.462 0.00 0.00 39.89 2.57
478 479 7.679025 ACCCTTTAGGATCTGTTTTCTACTAGT 59.321 37.037 0.00 0.00 39.89 2.57
479 480 7.982354 CCCTTTAGGATCTGTTTTCTACTAGTG 59.018 40.741 5.39 0.00 38.24 2.74
480 481 8.750298 CCTTTAGGATCTGTTTTCTACTAGTGA 58.250 37.037 5.39 0.00 37.39 3.41
483 484 9.702253 TTAGGATCTGTTTTCTACTAGTGATCT 57.298 33.333 5.39 0.60 32.31 2.75
485 486 9.875708 AGGATCTGTTTTCTACTAGTGATCTAT 57.124 33.333 5.39 0.00 32.31 1.98
519 520 8.409358 AAAAATACTAAAAGTGCAGATCCAGT 57.591 30.769 0.00 0.00 0.00 4.00
520 521 8.409358 AAAATACTAAAAGTGCAGATCCAGTT 57.591 30.769 0.00 0.00 0.00 3.16
521 522 9.515226 AAAATACTAAAAGTGCAGATCCAGTTA 57.485 29.630 0.00 0.00 0.00 2.24
522 523 9.515226 AAATACTAAAAGTGCAGATCCAGTTAA 57.485 29.630 0.00 0.00 0.00 2.01
523 524 9.686683 AATACTAAAAGTGCAGATCCAGTTAAT 57.313 29.630 0.00 0.00 0.00 1.40
524 525 7.617041 ACTAAAAGTGCAGATCCAGTTAATC 57.383 36.000 0.00 0.00 0.00 1.75
525 526 7.398024 ACTAAAAGTGCAGATCCAGTTAATCT 58.602 34.615 0.00 0.00 33.74 2.40
526 527 7.885399 ACTAAAAGTGCAGATCCAGTTAATCTT 59.115 33.333 0.00 0.00 31.05 2.40
527 528 6.506500 AAAGTGCAGATCCAGTTAATCTTG 57.493 37.500 0.00 0.00 31.05 3.02
528 529 5.426689 AGTGCAGATCCAGTTAATCTTGA 57.573 39.130 0.00 0.00 31.05 3.02
529 530 5.999044 AGTGCAGATCCAGTTAATCTTGAT 58.001 37.500 0.00 0.00 31.05 2.57
530 531 6.054295 AGTGCAGATCCAGTTAATCTTGATC 58.946 40.000 0.00 9.30 42.28 2.92
531 532 5.238214 GTGCAGATCCAGTTAATCTTGATCC 59.762 44.000 11.83 3.93 42.68 3.36
532 533 5.131642 TGCAGATCCAGTTAATCTTGATCCT 59.868 40.000 11.83 0.00 42.68 3.24
533 534 5.700373 GCAGATCCAGTTAATCTTGATCCTC 59.300 44.000 11.83 5.13 42.68 3.71
534 535 6.687393 GCAGATCCAGTTAATCTTGATCCTCA 60.687 42.308 11.83 0.00 42.68 3.86
535 536 7.278135 CAGATCCAGTTAATCTTGATCCTCAA 58.722 38.462 11.83 0.00 42.68 3.02
548 549 7.256756 CTTGATCCTCAAGTCATGTTAATCC 57.743 40.000 8.40 0.00 46.50 3.01
549 550 6.312141 TGATCCTCAAGTCATGTTAATCCA 57.688 37.500 0.00 0.00 0.00 3.41
550 551 6.720309 TGATCCTCAAGTCATGTTAATCCAA 58.280 36.000 0.00 0.00 0.00 3.53
551 552 7.348815 TGATCCTCAAGTCATGTTAATCCAAT 58.651 34.615 0.00 0.00 0.00 3.16
552 553 7.283807 TGATCCTCAAGTCATGTTAATCCAATG 59.716 37.037 0.00 0.00 0.00 2.82
553 554 6.720309 TCCTCAAGTCATGTTAATCCAATGA 58.280 36.000 0.00 0.00 0.00 2.57
554 555 6.599244 TCCTCAAGTCATGTTAATCCAATGAC 59.401 38.462 6.87 6.87 41.21 3.06
577 578 8.297426 TGACTTATATTACTCTAATGGTGAGCG 58.703 37.037 0.00 0.00 35.12 5.03
578 579 7.091443 ACTTATATTACTCTAATGGTGAGCGC 58.909 38.462 0.00 0.00 35.12 5.92
579 580 5.730296 ATATTACTCTAATGGTGAGCGCT 57.270 39.130 11.27 11.27 35.12 5.92
580 581 3.887621 TTACTCTAATGGTGAGCGCTT 57.112 42.857 13.26 0.00 35.12 4.68
581 582 4.994907 TTACTCTAATGGTGAGCGCTTA 57.005 40.909 13.26 3.74 35.12 3.09
582 583 3.887621 ACTCTAATGGTGAGCGCTTAA 57.112 42.857 13.26 0.00 35.12 1.85
583 584 3.522553 ACTCTAATGGTGAGCGCTTAAC 58.477 45.455 13.26 11.92 35.12 2.01
584 585 3.056107 ACTCTAATGGTGAGCGCTTAACA 60.056 43.478 23.07 23.07 35.12 2.41
585 586 4.122776 CTCTAATGGTGAGCGCTTAACAT 58.877 43.478 25.53 25.53 0.00 2.71
586 587 3.871006 TCTAATGGTGAGCGCTTAACATG 59.129 43.478 30.57 19.88 0.00 3.21
587 588 2.113860 ATGGTGAGCGCTTAACATGT 57.886 45.000 29.56 9.77 0.00 3.21
588 589 1.890876 TGGTGAGCGCTTAACATGTT 58.109 45.000 16.92 16.68 0.00 2.71
589 590 2.226330 TGGTGAGCGCTTAACATGTTT 58.774 42.857 16.92 0.00 0.00 2.83
590 591 3.403968 TGGTGAGCGCTTAACATGTTTA 58.596 40.909 16.92 6.77 0.00 2.01
591 592 3.815962 TGGTGAGCGCTTAACATGTTTAA 59.184 39.130 16.92 8.15 0.00 1.52
592 593 4.156182 GGTGAGCGCTTAACATGTTTAAC 58.844 43.478 17.78 1.83 0.00 2.01
593 594 4.319911 GGTGAGCGCTTAACATGTTTAACA 60.320 41.667 17.78 0.00 0.00 2.41
594 595 5.390613 GTGAGCGCTTAACATGTTTAACAT 58.609 37.500 17.78 4.56 39.91 2.71
611 612 9.152595 TGTTTAACATGCAATTAGTATCGTACA 57.847 29.630 0.00 0.00 0.00 2.90
630 631 8.432110 TCGTACATAATATCAATGTTTGTGCT 57.568 30.769 8.48 0.00 38.49 4.40
631 632 9.535878 TCGTACATAATATCAATGTTTGTGCTA 57.464 29.630 8.48 0.00 38.49 3.49
693 694 8.603242 TTTTGCGAGAAAATAGATATCCTACC 57.397 34.615 0.00 0.00 0.00 3.18
694 695 7.540474 TTGCGAGAAAATAGATATCCTACCT 57.460 36.000 0.00 0.00 0.00 3.08
695 696 8.645814 TTGCGAGAAAATAGATATCCTACCTA 57.354 34.615 0.00 0.00 0.00 3.08
696 697 8.824756 TGCGAGAAAATAGATATCCTACCTAT 57.175 34.615 0.00 0.00 0.00 2.57
697 698 9.256228 TGCGAGAAAATAGATATCCTACCTATT 57.744 33.333 0.00 0.00 35.35 1.73
698 699 9.522804 GCGAGAAAATAGATATCCTACCTATTG 57.477 37.037 0.00 0.00 34.44 1.90
707 708 8.497910 AGATATCCTACCTATTGTCAATGTGT 57.502 34.615 8.39 7.52 0.00 3.72
708 709 9.601810 AGATATCCTACCTATTGTCAATGTGTA 57.398 33.333 8.39 8.20 0.00 2.90
741 742 5.240183 TCTTCTTAATATCAGCCTGCATTGC 59.760 40.000 0.46 0.46 0.00 3.56
746 747 1.929806 ATCAGCCTGCATTGCACGTG 61.930 55.000 12.28 12.28 33.79 4.49
748 749 4.047059 GCCTGCATTGCACGTGCT 62.047 61.111 37.59 19.19 42.92 4.40
757 758 3.825308 CATTGCACGTGCTCATTTACTT 58.175 40.909 37.59 11.53 42.66 2.24
815 816 9.102453 ACTACTTTCTCTATTATAATCCACCCC 57.898 37.037 0.00 0.00 0.00 4.95
822 823 5.842328 TCTATTATAATCCACCCCTCGTTGT 59.158 40.000 0.00 0.00 0.00 3.32
839 840 6.667007 TCGTTGTACGATGATACAGTAAGA 57.333 37.500 0.47 0.00 46.73 2.10
840 841 6.481134 TCGTTGTACGATGATACAGTAAGAC 58.519 40.000 0.47 0.00 46.73 3.01
841 842 6.092533 TCGTTGTACGATGATACAGTAAGACA 59.907 38.462 0.47 0.00 46.73 3.41
842 843 6.411203 CGTTGTACGATGATACAGTAAGACAG 59.589 42.308 0.00 0.00 46.05 3.51
843 844 6.997239 TGTACGATGATACAGTAAGACAGT 57.003 37.500 0.00 0.00 31.38 3.55
860 876 7.541916 AAGACAGTAAGAGTAAACCTAGCTT 57.458 36.000 0.00 0.00 0.00 3.74
867 883 5.972107 AGAGTAAACCTAGCTTGTAACGA 57.028 39.130 0.00 0.00 0.00 3.85
880 896 1.202675 TGTAACGAGAACCCAACCACC 60.203 52.381 0.00 0.00 0.00 4.61
1053 1072 8.531982 TCTCAACTCATACAGTTTAGTTGCTAT 58.468 33.333 13.64 0.00 43.38 2.97
1054 1073 8.479313 TCAACTCATACAGTTTAGTTGCTATG 57.521 34.615 13.64 0.00 43.38 2.23
1209 1240 0.248990 ATGCACAACGTTGGCAACTG 60.249 50.000 32.95 23.15 37.70 3.16
1210 1241 2.230264 GCACAACGTTGGCAACTGC 61.230 57.895 30.34 24.99 41.14 4.40
1359 1397 2.191375 CATGGCCCGATGCTGACT 59.809 61.111 0.00 0.00 40.92 3.41
1439 1477 3.075005 CTTCTCCGGGAAGCGGGA 61.075 66.667 16.52 0.00 43.88 5.14
1898 1938 1.373246 CACGTAAACGGCGGAAGGA 60.373 57.895 13.24 0.00 44.95 3.36
1988 2030 2.504244 CCGTTCGTCGTCTCCTGC 60.504 66.667 0.00 0.00 37.94 4.85
2148 2227 8.978472 TGTAGGGGTATATCATATTAGACTTGC 58.022 37.037 0.00 0.00 0.00 4.01
2149 2228 8.978472 GTAGGGGTATATCATATTAGACTTGCA 58.022 37.037 0.00 0.00 0.00 4.08
2150 2229 8.629821 AGGGGTATATCATATTAGACTTGCAT 57.370 34.615 0.00 0.00 0.00 3.96
2151 2230 9.729550 AGGGGTATATCATATTAGACTTGCATA 57.270 33.333 0.00 0.00 0.00 3.14
2239 2322 5.452078 AAGCTTTGATCGACATTTTTGGA 57.548 34.783 0.00 0.00 0.00 3.53
2246 2329 4.522405 TGATCGACATTTTTGGACATGGTT 59.478 37.500 0.00 0.00 0.00 3.67
2297 2380 6.464465 GCCATGTTGATAGGTACCTCTACATT 60.464 42.308 20.32 6.33 35.86 2.71
2298 2381 7.509546 CCATGTTGATAGGTACCTCTACATTT 58.490 38.462 20.32 2.13 35.86 2.32
2387 2470 3.689649 CGGGAAAGTAGAAGTCCAATTGG 59.310 47.826 19.08 19.08 32.70 3.16
2406 2489 4.974645 TGGACCGATGAAATTAGGCTAT 57.025 40.909 0.00 0.00 0.00 2.97
2408 2491 6.428083 TGGACCGATGAAATTAGGCTATTA 57.572 37.500 0.00 0.00 0.00 0.98
2409 2492 6.464222 TGGACCGATGAAATTAGGCTATTAG 58.536 40.000 0.00 0.00 0.00 1.73
2411 2494 6.295688 GGACCGATGAAATTAGGCTATTAGGA 60.296 42.308 0.00 0.00 0.00 2.94
2412 2495 6.702329 ACCGATGAAATTAGGCTATTAGGAG 58.298 40.000 0.00 0.00 0.00 3.69
2413 2496 6.270231 ACCGATGAAATTAGGCTATTAGGAGT 59.730 38.462 0.00 0.00 0.00 3.85
2414 2497 7.453752 ACCGATGAAATTAGGCTATTAGGAGTA 59.546 37.037 0.00 0.00 0.00 2.59
2459 2554 7.766283 TGCATGATATCTCTAGTGCATAGTAC 58.234 38.462 3.98 0.00 37.63 2.73
2460 2555 6.909895 GCATGATATCTCTAGTGCATAGTACG 59.090 42.308 3.98 0.00 32.85 3.67
2463 2558 7.339482 TGATATCTCTAGTGCATAGTACGGAT 58.661 38.462 3.98 0.00 32.85 4.18
2503 2600 3.595691 GCTCATAGTAGCGCCACAT 57.404 52.632 9.06 0.00 31.76 3.21
2584 2681 7.708051 TCCTCTCTTTCTCAATCAATACTACG 58.292 38.462 0.00 0.00 0.00 3.51
2585 2682 7.339721 TCCTCTCTTTCTCAATCAATACTACGT 59.660 37.037 0.00 0.00 0.00 3.57
2586 2683 8.622157 CCTCTCTTTCTCAATCAATACTACGTA 58.378 37.037 0.00 0.00 0.00 3.57
2660 2757 6.065374 ACTTGGTTAATGGTTATGACACACA 58.935 36.000 0.00 0.00 0.00 3.72
2726 2823 4.207955 GGGACTCCTTTCAACAAGAAACT 58.792 43.478 0.00 0.00 41.17 2.66
2765 2862 5.306419 ACCCGAGTAGTAGGAAACTTCTTTT 59.694 40.000 0.00 0.00 43.67 2.27
2892 2989 0.035056 AGGCCTCCAAAATGGTCTCG 60.035 55.000 0.00 0.00 39.03 4.04
3025 3128 9.668497 ATGATAAAACTTAGGTCTAACAAGGTC 57.332 33.333 0.00 0.00 0.00 3.85
3057 3160 9.632638 AGCAAAATAGAGGATTAGAAAGCATAA 57.367 29.630 0.00 0.00 0.00 1.90
3073 3180 7.807907 AGAAAGCATAACAAAACAATAGGAACG 59.192 33.333 0.00 0.00 0.00 3.95
3112 3221 6.228258 ACATAGAGAAACGTCTTAAAAGGCA 58.772 36.000 0.00 0.00 32.80 4.75
3125 3234 6.095440 GTCTTAAAAGGCAGCTGAAATGGATA 59.905 38.462 20.43 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.893305 CCGTTTGAGTTTGAAACTATTATTCTT 57.107 29.630 11.01 0.00 43.03 2.52
9 10 9.063615 ACCGTTTGAGTTTGAAACTATTATTCT 57.936 29.630 11.01 0.00 43.03 2.40
10 11 9.113876 CACCGTTTGAGTTTGAAACTATTATTC 57.886 33.333 11.01 0.00 43.03 1.75
11 12 8.626526 ACACCGTTTGAGTTTGAAACTATTATT 58.373 29.630 11.01 0.00 43.03 1.40
12 13 8.161699 ACACCGTTTGAGTTTGAAACTATTAT 57.838 30.769 11.01 0.00 43.03 1.28
13 14 7.556733 ACACCGTTTGAGTTTGAAACTATTA 57.443 32.000 11.01 0.00 43.03 0.98
14 15 6.445357 ACACCGTTTGAGTTTGAAACTATT 57.555 33.333 11.01 0.00 43.03 1.73
15 16 7.255001 CCTTACACCGTTTGAGTTTGAAACTAT 60.255 37.037 11.01 0.00 43.03 2.12
16 17 6.037391 CCTTACACCGTTTGAGTTTGAAACTA 59.963 38.462 11.01 0.00 43.03 2.24
17 18 5.163693 CCTTACACCGTTTGAGTTTGAAACT 60.164 40.000 10.82 10.82 46.38 2.66
18 19 5.032220 CCTTACACCGTTTGAGTTTGAAAC 58.968 41.667 0.00 0.00 0.00 2.78
19 20 4.701171 ACCTTACACCGTTTGAGTTTGAAA 59.299 37.500 0.00 0.00 0.00 2.69
20 21 4.095185 CACCTTACACCGTTTGAGTTTGAA 59.905 41.667 0.00 0.00 0.00 2.69
21 22 3.623960 CACCTTACACCGTTTGAGTTTGA 59.376 43.478 0.00 0.00 0.00 2.69
22 23 3.375922 ACACCTTACACCGTTTGAGTTTG 59.624 43.478 0.00 0.00 0.00 2.93
23 24 3.375922 CACACCTTACACCGTTTGAGTTT 59.624 43.478 0.00 0.00 0.00 2.66
24 25 2.940410 CACACCTTACACCGTTTGAGTT 59.060 45.455 0.00 0.00 0.00 3.01
25 26 2.168936 TCACACCTTACACCGTTTGAGT 59.831 45.455 0.00 0.00 0.00 3.41
26 27 2.542595 GTCACACCTTACACCGTTTGAG 59.457 50.000 0.00 0.00 0.00 3.02
27 28 2.168936 AGTCACACCTTACACCGTTTGA 59.831 45.455 0.00 0.00 0.00 2.69
28 29 2.557317 AGTCACACCTTACACCGTTTG 58.443 47.619 0.00 0.00 0.00 2.93
29 30 2.994186 AGTCACACCTTACACCGTTT 57.006 45.000 0.00 0.00 0.00 3.60
30 31 2.168936 TGAAGTCACACCTTACACCGTT 59.831 45.455 0.00 0.00 0.00 4.44
31 32 1.758280 TGAAGTCACACCTTACACCGT 59.242 47.619 0.00 0.00 0.00 4.83
32 33 2.519377 TGAAGTCACACCTTACACCG 57.481 50.000 0.00 0.00 0.00 4.94
33 34 5.148651 AGTATGAAGTCACACCTTACACC 57.851 43.478 0.00 0.00 0.00 4.16
34 35 5.779922 TGAGTATGAAGTCACACCTTACAC 58.220 41.667 0.00 0.00 29.81 2.90
35 36 6.041637 AGTTGAGTATGAAGTCACACCTTACA 59.958 38.462 0.00 0.00 34.73 2.41
36 37 6.456501 AGTTGAGTATGAAGTCACACCTTAC 58.543 40.000 0.00 0.00 34.73 2.34
37 38 6.665992 AGTTGAGTATGAAGTCACACCTTA 57.334 37.500 0.00 0.00 34.73 2.69
38 39 5.552870 AGTTGAGTATGAAGTCACACCTT 57.447 39.130 0.00 0.00 34.73 3.50
39 40 5.070446 TGAAGTTGAGTATGAAGTCACACCT 59.930 40.000 0.00 0.00 34.73 4.00
40 41 5.297547 TGAAGTTGAGTATGAAGTCACACC 58.702 41.667 0.00 0.00 34.73 4.16
41 42 6.480320 AGTTGAAGTTGAGTATGAAGTCACAC 59.520 38.462 0.00 0.00 34.73 3.82
42 43 6.582636 AGTTGAAGTTGAGTATGAAGTCACA 58.417 36.000 0.00 0.00 34.73 3.58
43 44 6.701841 TGAGTTGAAGTTGAGTATGAAGTCAC 59.298 38.462 0.00 0.00 34.73 3.67
44 45 6.816136 TGAGTTGAAGTTGAGTATGAAGTCA 58.184 36.000 0.00 0.00 33.09 3.41
45 46 7.897575 ATGAGTTGAAGTTGAGTATGAAGTC 57.102 36.000 0.00 0.00 0.00 3.01
46 47 9.429359 CTTATGAGTTGAAGTTGAGTATGAAGT 57.571 33.333 0.00 0.00 0.00 3.01
47 48 8.877779 CCTTATGAGTTGAAGTTGAGTATGAAG 58.122 37.037 0.00 0.00 0.00 3.02
48 49 7.824289 CCCTTATGAGTTGAAGTTGAGTATGAA 59.176 37.037 0.00 0.00 0.00 2.57
49 50 7.038302 ACCCTTATGAGTTGAAGTTGAGTATGA 60.038 37.037 0.00 0.00 0.00 2.15
50 51 7.065085 CACCCTTATGAGTTGAAGTTGAGTATG 59.935 40.741 0.00 0.00 0.00 2.39
51 52 7.038302 TCACCCTTATGAGTTGAAGTTGAGTAT 60.038 37.037 0.00 0.00 0.00 2.12
52 53 6.269077 TCACCCTTATGAGTTGAAGTTGAGTA 59.731 38.462 0.00 0.00 0.00 2.59
53 54 5.071788 TCACCCTTATGAGTTGAAGTTGAGT 59.928 40.000 0.00 0.00 0.00 3.41
54 55 5.551233 TCACCCTTATGAGTTGAAGTTGAG 58.449 41.667 0.00 0.00 0.00 3.02
55 56 5.560722 TCACCCTTATGAGTTGAAGTTGA 57.439 39.130 0.00 0.00 0.00 3.18
56 57 6.824305 ATTCACCCTTATGAGTTGAAGTTG 57.176 37.500 5.41 0.00 30.74 3.16
57 58 7.037586 TCCTATTCACCCTTATGAGTTGAAGTT 60.038 37.037 5.41 0.00 30.74 2.66
58 59 6.443849 TCCTATTCACCCTTATGAGTTGAAGT 59.556 38.462 5.41 0.00 30.74 3.01
59 60 6.889198 TCCTATTCACCCTTATGAGTTGAAG 58.111 40.000 5.41 0.00 30.74 3.02
60 61 6.884472 TCCTATTCACCCTTATGAGTTGAA 57.116 37.500 2.44 2.44 31.38 2.69
61 62 7.127186 TCAATCCTATTCACCCTTATGAGTTGA 59.873 37.037 0.00 0.00 0.00 3.18
62 63 7.227512 GTCAATCCTATTCACCCTTATGAGTTG 59.772 40.741 0.00 0.00 0.00 3.16
63 64 7.092444 TGTCAATCCTATTCACCCTTATGAGTT 60.092 37.037 0.00 0.00 0.00 3.01
64 65 6.386927 TGTCAATCCTATTCACCCTTATGAGT 59.613 38.462 0.00 0.00 0.00 3.41
65 66 6.830912 TGTCAATCCTATTCACCCTTATGAG 58.169 40.000 0.00 0.00 0.00 2.90
66 67 6.688922 GCTGTCAATCCTATTCACCCTTATGA 60.689 42.308 0.00 0.00 0.00 2.15
67 68 5.471456 GCTGTCAATCCTATTCACCCTTATG 59.529 44.000 0.00 0.00 0.00 1.90
68 69 5.370880 AGCTGTCAATCCTATTCACCCTTAT 59.629 40.000 0.00 0.00 0.00 1.73
69 70 4.721776 AGCTGTCAATCCTATTCACCCTTA 59.278 41.667 0.00 0.00 0.00 2.69
70 71 3.525199 AGCTGTCAATCCTATTCACCCTT 59.475 43.478 0.00 0.00 0.00 3.95
71 72 3.118531 AGCTGTCAATCCTATTCACCCT 58.881 45.455 0.00 0.00 0.00 4.34
72 73 3.567478 AGCTGTCAATCCTATTCACCC 57.433 47.619 0.00 0.00 0.00 4.61
73 74 5.675538 AGTAAGCTGTCAATCCTATTCACC 58.324 41.667 0.00 0.00 0.00 4.02
74 75 8.768955 CAATAGTAAGCTGTCAATCCTATTCAC 58.231 37.037 0.00 0.00 0.00 3.18
75 76 8.486210 ACAATAGTAAGCTGTCAATCCTATTCA 58.514 33.333 0.00 0.00 0.00 2.57
76 77 8.894768 ACAATAGTAAGCTGTCAATCCTATTC 57.105 34.615 0.00 0.00 0.00 1.75
77 78 8.486210 TGACAATAGTAAGCTGTCAATCCTATT 58.514 33.333 9.47 0.00 44.80 1.73
78 79 8.023021 TGACAATAGTAAGCTGTCAATCCTAT 57.977 34.615 9.47 0.00 44.80 2.57
79 80 7.417911 CCTGACAATAGTAAGCTGTCAATCCTA 60.418 40.741 11.86 0.00 46.44 2.94
80 81 6.299805 TGACAATAGTAAGCTGTCAATCCT 57.700 37.500 9.47 0.00 44.80 3.24
81 82 5.525378 CCTGACAATAGTAAGCTGTCAATCC 59.475 44.000 11.86 0.00 46.44 3.01
82 83 6.341316 TCCTGACAATAGTAAGCTGTCAATC 58.659 40.000 11.86 0.00 46.44 2.67
83 84 6.299805 TCCTGACAATAGTAAGCTGTCAAT 57.700 37.500 11.86 0.00 46.44 2.57
84 85 5.738619 TCCTGACAATAGTAAGCTGTCAA 57.261 39.130 11.86 0.35 46.44 3.18
85 86 5.738619 TTCCTGACAATAGTAAGCTGTCA 57.261 39.130 10.81 10.81 45.39 3.58
86 87 6.426937 TGTTTTCCTGACAATAGTAAGCTGTC 59.573 38.462 0.00 0.00 39.93 3.51
87 88 6.296026 TGTTTTCCTGACAATAGTAAGCTGT 58.704 36.000 0.00 0.00 0.00 4.40
88 89 6.801539 TGTTTTCCTGACAATAGTAAGCTG 57.198 37.500 0.00 0.00 0.00 4.24
89 90 6.770785 TGTTGTTTTCCTGACAATAGTAAGCT 59.229 34.615 0.00 0.00 39.03 3.74
90 91 6.966021 TGTTGTTTTCCTGACAATAGTAAGC 58.034 36.000 0.00 0.00 39.03 3.09
91 92 8.621286 ACTTGTTGTTTTCCTGACAATAGTAAG 58.379 33.333 0.00 0.00 39.03 2.34
92 93 8.402472 CACTTGTTGTTTTCCTGACAATAGTAA 58.598 33.333 0.00 0.00 39.03 2.24
93 94 7.468084 GCACTTGTTGTTTTCCTGACAATAGTA 60.468 37.037 0.00 0.00 39.03 1.82
94 95 6.680378 GCACTTGTTGTTTTCCTGACAATAGT 60.680 38.462 0.00 0.00 39.03 2.12
95 96 5.687285 GCACTTGTTGTTTTCCTGACAATAG 59.313 40.000 0.00 0.00 39.03 1.73
96 97 5.126222 TGCACTTGTTGTTTTCCTGACAATA 59.874 36.000 0.00 0.00 39.03 1.90
97 98 4.081752 TGCACTTGTTGTTTTCCTGACAAT 60.082 37.500 0.00 0.00 39.03 2.71
98 99 3.256879 TGCACTTGTTGTTTTCCTGACAA 59.743 39.130 0.00 0.00 34.83 3.18
99 100 2.822561 TGCACTTGTTGTTTTCCTGACA 59.177 40.909 0.00 0.00 0.00 3.58
100 101 3.128589 TCTGCACTTGTTGTTTTCCTGAC 59.871 43.478 0.00 0.00 0.00 3.51
101 102 3.128589 GTCTGCACTTGTTGTTTTCCTGA 59.871 43.478 0.00 0.00 0.00 3.86
102 103 3.129287 AGTCTGCACTTGTTGTTTTCCTG 59.871 43.478 0.00 0.00 0.00 3.86
103 104 3.356290 AGTCTGCACTTGTTGTTTTCCT 58.644 40.909 0.00 0.00 0.00 3.36
104 105 3.782889 AGTCTGCACTTGTTGTTTTCC 57.217 42.857 0.00 0.00 0.00 3.13
114 115 2.689983 CCTTGTTTCCAAGTCTGCACTT 59.310 45.455 2.17 0.00 45.49 3.16
115 116 2.301346 CCTTGTTTCCAAGTCTGCACT 58.699 47.619 2.17 0.00 45.49 4.40
116 117 1.338020 CCCTTGTTTCCAAGTCTGCAC 59.662 52.381 2.17 0.00 45.49 4.57
117 118 1.691196 CCCTTGTTTCCAAGTCTGCA 58.309 50.000 2.17 0.00 45.49 4.41
118 119 0.961753 CCCCTTGTTTCCAAGTCTGC 59.038 55.000 2.17 0.00 45.49 4.26
119 120 1.144913 TCCCCCTTGTTTCCAAGTCTG 59.855 52.381 2.17 0.00 45.49 3.51
120 121 1.529744 TCCCCCTTGTTTCCAAGTCT 58.470 50.000 2.17 0.00 45.49 3.24
121 122 2.375014 TTCCCCCTTGTTTCCAAGTC 57.625 50.000 2.17 0.00 45.49 3.01
122 123 4.479156 TTATTCCCCCTTGTTTCCAAGT 57.521 40.909 2.17 0.00 45.49 3.16
123 124 5.306937 AGTTTTATTCCCCCTTGTTTCCAAG 59.693 40.000 0.00 0.00 46.33 3.61
124 125 5.220521 AGTTTTATTCCCCCTTGTTTCCAA 58.779 37.500 0.00 0.00 0.00 3.53
125 126 4.821940 AGTTTTATTCCCCCTTGTTTCCA 58.178 39.130 0.00 0.00 0.00 3.53
126 127 4.082408 CGAGTTTTATTCCCCCTTGTTTCC 60.082 45.833 0.00 0.00 0.00 3.13
127 128 4.763279 TCGAGTTTTATTCCCCCTTGTTTC 59.237 41.667 0.00 0.00 0.00 2.78
128 129 4.732065 TCGAGTTTTATTCCCCCTTGTTT 58.268 39.130 0.00 0.00 0.00 2.83
129 130 4.376225 TCGAGTTTTATTCCCCCTTGTT 57.624 40.909 0.00 0.00 0.00 2.83
130 131 4.376225 TTCGAGTTTTATTCCCCCTTGT 57.624 40.909 0.00 0.00 0.00 3.16
131 132 4.380550 GCTTTCGAGTTTTATTCCCCCTTG 60.381 45.833 0.00 0.00 0.00 3.61
132 133 3.762288 GCTTTCGAGTTTTATTCCCCCTT 59.238 43.478 0.00 0.00 0.00 3.95
133 134 3.010250 AGCTTTCGAGTTTTATTCCCCCT 59.990 43.478 0.00 0.00 0.00 4.79
134 135 3.353557 AGCTTTCGAGTTTTATTCCCCC 58.646 45.455 0.00 0.00 0.00 5.40
135 136 5.448768 GCTTAGCTTTCGAGTTTTATTCCCC 60.449 44.000 0.00 0.00 0.00 4.81
136 137 5.570344 GCTTAGCTTTCGAGTTTTATTCCC 58.430 41.667 0.00 0.00 0.00 3.97
137 138 5.163884 ACGCTTAGCTTTCGAGTTTTATTCC 60.164 40.000 1.76 0.00 0.00 3.01
138 139 5.728507 CACGCTTAGCTTTCGAGTTTTATTC 59.271 40.000 1.76 0.00 0.00 1.75
139 140 5.618561 CACGCTTAGCTTTCGAGTTTTATT 58.381 37.500 1.76 0.00 0.00 1.40
140 141 4.435651 GCACGCTTAGCTTTCGAGTTTTAT 60.436 41.667 1.76 0.00 0.00 1.40
141 142 3.120786 GCACGCTTAGCTTTCGAGTTTTA 60.121 43.478 1.76 0.00 0.00 1.52
142 143 2.349532 GCACGCTTAGCTTTCGAGTTTT 60.350 45.455 1.76 0.00 0.00 2.43
143 144 1.194772 GCACGCTTAGCTTTCGAGTTT 59.805 47.619 1.76 0.00 0.00 2.66
144 145 0.790814 GCACGCTTAGCTTTCGAGTT 59.209 50.000 1.76 0.00 0.00 3.01
145 146 0.038159 AGCACGCTTAGCTTTCGAGT 60.038 50.000 1.76 0.00 39.87 4.18
146 147 2.743195 AGCACGCTTAGCTTTCGAG 58.257 52.632 1.76 0.00 39.87 4.04
147 148 4.988065 AGCACGCTTAGCTTTCGA 57.012 50.000 1.76 0.00 39.87 3.71
155 156 2.108168 ACTCCATCCTAAGCACGCTTA 58.892 47.619 10.87 10.87 37.47 3.09
156 157 0.905357 ACTCCATCCTAAGCACGCTT 59.095 50.000 9.57 9.57 39.83 4.68
157 158 1.683917 CTACTCCATCCTAAGCACGCT 59.316 52.381 0.00 0.00 0.00 5.07
158 159 1.409427 ACTACTCCATCCTAAGCACGC 59.591 52.381 0.00 0.00 0.00 5.34
159 160 2.688446 TCACTACTCCATCCTAAGCACG 59.312 50.000 0.00 0.00 0.00 5.34
160 161 3.954904 TCTCACTACTCCATCCTAAGCAC 59.045 47.826 0.00 0.00 0.00 4.40
161 162 4.251103 TCTCACTACTCCATCCTAAGCA 57.749 45.455 0.00 0.00 0.00 3.91
162 163 5.799827 ATTCTCACTACTCCATCCTAAGC 57.200 43.478 0.00 0.00 0.00 3.09
163 164 7.093552 CCCATATTCTCACTACTCCATCCTAAG 60.094 44.444 0.00 0.00 0.00 2.18
164 165 6.726299 CCCATATTCTCACTACTCCATCCTAA 59.274 42.308 0.00 0.00 0.00 2.69
165 166 6.183361 ACCCATATTCTCACTACTCCATCCTA 60.183 42.308 0.00 0.00 0.00 2.94
166 167 5.090139 CCCATATTCTCACTACTCCATCCT 58.910 45.833 0.00 0.00 0.00 3.24
167 168 4.841246 ACCCATATTCTCACTACTCCATCC 59.159 45.833 0.00 0.00 0.00 3.51
168 169 5.540337 TCACCCATATTCTCACTACTCCATC 59.460 44.000 0.00 0.00 0.00 3.51
169 170 5.305644 GTCACCCATATTCTCACTACTCCAT 59.694 44.000 0.00 0.00 0.00 3.41
170 171 4.649674 GTCACCCATATTCTCACTACTCCA 59.350 45.833 0.00 0.00 0.00 3.86
171 172 4.039366 GGTCACCCATATTCTCACTACTCC 59.961 50.000 0.00 0.00 0.00 3.85
172 173 4.261656 CGGTCACCCATATTCTCACTACTC 60.262 50.000 0.00 0.00 0.00 2.59
173 174 3.637229 CGGTCACCCATATTCTCACTACT 59.363 47.826 0.00 0.00 0.00 2.57
174 175 3.243771 CCGGTCACCCATATTCTCACTAC 60.244 52.174 0.00 0.00 0.00 2.73
175 176 2.963101 CCGGTCACCCATATTCTCACTA 59.037 50.000 0.00 0.00 0.00 2.74
176 177 1.762957 CCGGTCACCCATATTCTCACT 59.237 52.381 0.00 0.00 0.00 3.41
177 178 1.810412 GCCGGTCACCCATATTCTCAC 60.810 57.143 1.90 0.00 0.00 3.51
178 179 0.468226 GCCGGTCACCCATATTCTCA 59.532 55.000 1.90 0.00 0.00 3.27
179 180 0.250338 GGCCGGTCACCCATATTCTC 60.250 60.000 0.00 0.00 0.00 2.87
180 181 1.837090 GGCCGGTCACCCATATTCT 59.163 57.895 0.00 0.00 0.00 2.40
181 182 1.597027 CGGCCGGTCACCCATATTC 60.597 63.158 20.10 0.00 0.00 1.75
182 183 2.508928 CGGCCGGTCACCCATATT 59.491 61.111 20.10 0.00 0.00 1.28
183 184 3.556306 CCGGCCGGTCACCCATAT 61.556 66.667 36.64 0.00 0.00 1.78
184 185 4.781616 TCCGGCCGGTCACCCATA 62.782 66.667 41.57 19.37 36.47 2.74
188 189 2.453379 TAACTTTCCGGCCGGTCACC 62.453 60.000 41.57 0.00 36.47 4.02
189 190 1.004679 TAACTTTCCGGCCGGTCAC 60.005 57.895 41.57 0.00 36.47 3.67
190 191 1.186917 TCTAACTTTCCGGCCGGTCA 61.187 55.000 41.57 27.59 36.47 4.02
191 192 0.738762 GTCTAACTTTCCGGCCGGTC 60.739 60.000 41.57 17.87 36.47 4.79
192 193 1.294459 GTCTAACTTTCCGGCCGGT 59.706 57.895 41.57 25.92 36.47 5.28
193 194 1.808390 CGTCTAACTTTCCGGCCGG 60.808 63.158 39.13 39.13 0.00 6.13
194 195 0.179119 ATCGTCTAACTTTCCGGCCG 60.179 55.000 21.04 21.04 0.00 6.13
195 196 2.019948 AATCGTCTAACTTTCCGGCC 57.980 50.000 0.00 0.00 0.00 6.13
196 197 2.095372 CCAAATCGTCTAACTTTCCGGC 59.905 50.000 0.00 0.00 0.00 6.13
197 198 3.592059 TCCAAATCGTCTAACTTTCCGG 58.408 45.455 0.00 0.00 0.00 5.14
198 199 5.350365 TCATTCCAAATCGTCTAACTTTCCG 59.650 40.000 0.00 0.00 0.00 4.30
199 200 6.737254 TCATTCCAAATCGTCTAACTTTCC 57.263 37.500 0.00 0.00 0.00 3.13
200 201 7.974675 TCATCATTCCAAATCGTCTAACTTTC 58.025 34.615 0.00 0.00 0.00 2.62
201 202 7.066284 CCTCATCATTCCAAATCGTCTAACTTT 59.934 37.037 0.00 0.00 0.00 2.66
202 203 6.540189 CCTCATCATTCCAAATCGTCTAACTT 59.460 38.462 0.00 0.00 0.00 2.66
203 204 6.051717 CCTCATCATTCCAAATCGTCTAACT 58.948 40.000 0.00 0.00 0.00 2.24
204 205 5.237344 CCCTCATCATTCCAAATCGTCTAAC 59.763 44.000 0.00 0.00 0.00 2.34
205 206 5.368145 CCCTCATCATTCCAAATCGTCTAA 58.632 41.667 0.00 0.00 0.00 2.10
206 207 4.202357 CCCCTCATCATTCCAAATCGTCTA 60.202 45.833 0.00 0.00 0.00 2.59
207 208 3.434167 CCCCTCATCATTCCAAATCGTCT 60.434 47.826 0.00 0.00 0.00 4.18
208 209 2.880890 CCCCTCATCATTCCAAATCGTC 59.119 50.000 0.00 0.00 0.00 4.20
209 210 2.242196 ACCCCTCATCATTCCAAATCGT 59.758 45.455 0.00 0.00 0.00 3.73
210 211 2.620115 CACCCCTCATCATTCCAAATCG 59.380 50.000 0.00 0.00 0.00 3.34
211 212 3.902218 TCACCCCTCATCATTCCAAATC 58.098 45.455 0.00 0.00 0.00 2.17
212 213 4.547886 ATCACCCCTCATCATTCCAAAT 57.452 40.909 0.00 0.00 0.00 2.32
213 214 4.335735 AATCACCCCTCATCATTCCAAA 57.664 40.909 0.00 0.00 0.00 3.28
214 215 4.726317 TCTAATCACCCCTCATCATTCCAA 59.274 41.667 0.00 0.00 0.00 3.53
215 216 4.306391 TCTAATCACCCCTCATCATTCCA 58.694 43.478 0.00 0.00 0.00 3.53
216 217 4.594920 TCTCTAATCACCCCTCATCATTCC 59.405 45.833 0.00 0.00 0.00 3.01
217 218 5.815233 TCTCTAATCACCCCTCATCATTC 57.185 43.478 0.00 0.00 0.00 2.67
218 219 6.776887 AATCTCTAATCACCCCTCATCATT 57.223 37.500 0.00 0.00 0.00 2.57
219 220 7.251936 TCTAATCTCTAATCACCCCTCATCAT 58.748 38.462 0.00 0.00 0.00 2.45
220 221 6.624297 TCTAATCTCTAATCACCCCTCATCA 58.376 40.000 0.00 0.00 0.00 3.07
221 222 6.951198 TCTCTAATCTCTAATCACCCCTCATC 59.049 42.308 0.00 0.00 0.00 2.92
222 223 6.868826 TCTCTAATCTCTAATCACCCCTCAT 58.131 40.000 0.00 0.00 0.00 2.90
223 224 6.281190 TCTCTAATCTCTAATCACCCCTCA 57.719 41.667 0.00 0.00 0.00 3.86
224 225 7.790782 AATCTCTAATCTCTAATCACCCCTC 57.209 40.000 0.00 0.00 0.00 4.30
225 226 9.676129 TTTAATCTCTAATCTCTAATCACCCCT 57.324 33.333 0.00 0.00 0.00 4.79
235 236 9.545105 CACTGCTCAATTTAATCTCTAATCTCT 57.455 33.333 0.00 0.00 0.00 3.10
236 237 9.539825 TCACTGCTCAATTTAATCTCTAATCTC 57.460 33.333 0.00 0.00 0.00 2.75
239 240 9.842775 TCATCACTGCTCAATTTAATCTCTAAT 57.157 29.630 0.00 0.00 0.00 1.73
240 241 9.322773 CTCATCACTGCTCAATTTAATCTCTAA 57.677 33.333 0.00 0.00 0.00 2.10
241 242 7.930325 CCTCATCACTGCTCAATTTAATCTCTA 59.070 37.037 0.00 0.00 0.00 2.43
242 243 6.766944 CCTCATCACTGCTCAATTTAATCTCT 59.233 38.462 0.00 0.00 0.00 3.10
243 244 6.017275 CCCTCATCACTGCTCAATTTAATCTC 60.017 42.308 0.00 0.00 0.00 2.75
244 245 5.826737 CCCTCATCACTGCTCAATTTAATCT 59.173 40.000 0.00 0.00 0.00 2.40
245 246 5.009410 CCCCTCATCACTGCTCAATTTAATC 59.991 44.000 0.00 0.00 0.00 1.75
246 247 4.891756 CCCCTCATCACTGCTCAATTTAAT 59.108 41.667 0.00 0.00 0.00 1.40
247 248 4.263905 ACCCCTCATCACTGCTCAATTTAA 60.264 41.667 0.00 0.00 0.00 1.52
248 249 3.266772 ACCCCTCATCACTGCTCAATTTA 59.733 43.478 0.00 0.00 0.00 1.40
249 250 2.042162 ACCCCTCATCACTGCTCAATTT 59.958 45.455 0.00 0.00 0.00 1.82
250 251 1.637553 ACCCCTCATCACTGCTCAATT 59.362 47.619 0.00 0.00 0.00 2.32
251 252 1.064906 CACCCCTCATCACTGCTCAAT 60.065 52.381 0.00 0.00 0.00 2.57
252 253 0.325933 CACCCCTCATCACTGCTCAA 59.674 55.000 0.00 0.00 0.00 3.02
253 254 0.545071 TCACCCCTCATCACTGCTCA 60.545 55.000 0.00 0.00 0.00 4.26
254 255 0.835941 ATCACCCCTCATCACTGCTC 59.164 55.000 0.00 0.00 0.00 4.26
255 256 1.293062 AATCACCCCTCATCACTGCT 58.707 50.000 0.00 0.00 0.00 4.24
256 257 2.435805 TCTAATCACCCCTCATCACTGC 59.564 50.000 0.00 0.00 0.00 4.40
257 258 3.963374 TCTCTAATCACCCCTCATCACTG 59.037 47.826 0.00 0.00 0.00 3.66
258 259 4.271807 TCTCTAATCACCCCTCATCACT 57.728 45.455 0.00 0.00 0.00 3.41
259 260 5.559148 AATCTCTAATCACCCCTCATCAC 57.441 43.478 0.00 0.00 0.00 3.06
260 261 7.690454 TTTAATCTCTAATCACCCCTCATCA 57.310 36.000 0.00 0.00 0.00 3.07
321 322 5.831525 ACCAACCGAGACTAAAGGAATTTTT 59.168 36.000 0.00 0.00 0.00 1.94
322 323 5.240844 CACCAACCGAGACTAAAGGAATTTT 59.759 40.000 0.00 0.00 0.00 1.82
323 324 4.760204 CACCAACCGAGACTAAAGGAATTT 59.240 41.667 0.00 0.00 0.00 1.82
324 325 4.202430 ACACCAACCGAGACTAAAGGAATT 60.202 41.667 0.00 0.00 0.00 2.17
325 326 3.326880 ACACCAACCGAGACTAAAGGAAT 59.673 43.478 0.00 0.00 0.00 3.01
326 327 2.701951 ACACCAACCGAGACTAAAGGAA 59.298 45.455 0.00 0.00 0.00 3.36
327 328 2.322658 ACACCAACCGAGACTAAAGGA 58.677 47.619 0.00 0.00 0.00 3.36
328 329 2.833631 ACACCAACCGAGACTAAAGG 57.166 50.000 0.00 0.00 0.00 3.11
329 330 3.992427 GGTAACACCAACCGAGACTAAAG 59.008 47.826 0.00 0.00 38.42 1.85
330 331 3.993920 GGTAACACCAACCGAGACTAAA 58.006 45.455 0.00 0.00 38.42 1.85
331 332 3.665745 GGTAACACCAACCGAGACTAA 57.334 47.619 0.00 0.00 38.42 2.24
345 346 6.315534 GACCTTTAGTCCCGGTTGGTAACA 62.316 50.000 0.00 0.00 42.49 2.41
346 347 2.038952 ACCTTTAGTCCCGGTTGGTAAC 59.961 50.000 0.00 0.00 34.77 2.50
347 348 2.302733 GACCTTTAGTCCCGGTTGGTAA 59.697 50.000 0.00 0.00 39.84 2.85
348 349 1.901833 GACCTTTAGTCCCGGTTGGTA 59.098 52.381 0.00 0.00 39.84 3.25
349 350 0.689055 GACCTTTAGTCCCGGTTGGT 59.311 55.000 0.00 0.00 39.84 3.67
350 351 0.390735 CGACCTTTAGTCCCGGTTGG 60.391 60.000 0.00 0.00 43.08 3.77
351 352 0.604578 TCGACCTTTAGTCCCGGTTG 59.395 55.000 0.00 0.00 43.08 3.77
352 353 0.893447 CTCGACCTTTAGTCCCGGTT 59.107 55.000 0.00 0.00 43.08 4.44
353 354 1.602327 GCTCGACCTTTAGTCCCGGT 61.602 60.000 0.00 0.00 43.08 5.28
354 355 1.141234 GCTCGACCTTTAGTCCCGG 59.859 63.158 0.00 0.00 43.08 5.73
355 356 0.100861 GAGCTCGACCTTTAGTCCCG 59.899 60.000 0.00 0.00 43.08 5.14
356 357 0.460722 GGAGCTCGACCTTTAGTCCC 59.539 60.000 7.83 0.00 43.08 4.46
357 358 1.135333 CTGGAGCTCGACCTTTAGTCC 59.865 57.143 7.83 0.00 43.08 3.85
358 359 2.093106 TCTGGAGCTCGACCTTTAGTC 58.907 52.381 7.83 0.00 42.54 2.59
359 360 1.819903 GTCTGGAGCTCGACCTTTAGT 59.180 52.381 7.83 0.00 0.00 2.24
360 361 1.819288 TGTCTGGAGCTCGACCTTTAG 59.181 52.381 16.26 3.79 0.00 1.85
361 362 1.819288 CTGTCTGGAGCTCGACCTTTA 59.181 52.381 16.26 0.86 0.00 1.85
362 363 0.605589 CTGTCTGGAGCTCGACCTTT 59.394 55.000 16.26 0.00 0.00 3.11
363 364 1.882989 GCTGTCTGGAGCTCGACCTT 61.883 60.000 16.26 0.00 35.95 3.50
364 365 2.347322 GCTGTCTGGAGCTCGACCT 61.347 63.158 16.26 0.00 35.95 3.85
365 366 2.183046 GCTGTCTGGAGCTCGACC 59.817 66.667 16.26 1.41 35.95 4.79
366 367 2.202544 CGCTGTCTGGAGCTCGAC 60.203 66.667 7.83 11.02 36.77 4.20
367 368 3.443925 CCGCTGTCTGGAGCTCGA 61.444 66.667 7.83 2.19 36.77 4.04
369 370 4.828925 GGCCGCTGTCTGGAGCTC 62.829 72.222 4.71 4.71 36.77 4.09
385 386 1.078426 CTAAAGGCCCTCCACGTGG 60.078 63.158 29.26 29.26 33.74 4.94
386 387 0.391263 GACTAAAGGCCCTCCACGTG 60.391 60.000 9.08 9.08 33.74 4.49
387 388 1.551019 GGACTAAAGGCCCTCCACGT 61.551 60.000 0.00 0.00 33.74 4.49
388 389 1.221021 GGACTAAAGGCCCTCCACG 59.779 63.158 0.00 0.00 33.74 4.94
389 390 1.608154 GGGACTAAAGGCCCTCCAC 59.392 63.158 14.19 0.00 41.31 4.02
390 391 1.993391 CGGGACTAAAGGCCCTCCA 60.993 63.158 18.97 0.00 42.40 3.86
391 392 2.743179 CCGGGACTAAAGGCCCTCC 61.743 68.421 18.97 0.00 42.40 4.30
392 393 1.559965 AACCGGGACTAAAGGCCCTC 61.560 60.000 18.97 0.00 42.40 4.30
393 394 1.540617 AACCGGGACTAAAGGCCCT 60.541 57.895 18.97 0.00 42.40 5.19
394 395 1.077930 GAACCGGGACTAAAGGCCC 60.078 63.158 11.29 11.29 41.11 5.80
395 396 1.449070 CGAACCGGGACTAAAGGCC 60.449 63.158 6.32 0.00 0.00 5.19
396 397 0.532115 TACGAACCGGGACTAAAGGC 59.468 55.000 6.32 0.00 0.00 4.35
397 398 2.029110 TGTTACGAACCGGGACTAAAGG 60.029 50.000 6.32 0.00 0.00 3.11
398 399 2.989166 GTGTTACGAACCGGGACTAAAG 59.011 50.000 6.32 0.00 0.00 1.85
399 400 2.363680 TGTGTTACGAACCGGGACTAAA 59.636 45.455 6.32 0.00 0.00 1.85
400 401 1.959985 TGTGTTACGAACCGGGACTAA 59.040 47.619 6.32 0.00 0.00 2.24
401 402 1.614996 TGTGTTACGAACCGGGACTA 58.385 50.000 6.32 0.00 0.00 2.59
402 403 0.752054 TTGTGTTACGAACCGGGACT 59.248 50.000 6.32 0.00 0.00 3.85
403 404 0.861185 GTTGTGTTACGAACCGGGAC 59.139 55.000 6.32 0.00 0.00 4.46
404 405 0.249826 GGTTGTGTTACGAACCGGGA 60.250 55.000 6.32 0.00 32.66 5.14
405 406 2.237416 GGTTGTGTTACGAACCGGG 58.763 57.895 6.32 0.00 32.66 5.73
408 409 0.249826 TCCCGGTTGTGTTACGAACC 60.250 55.000 0.00 6.15 38.65 3.62
409 410 0.861185 GTCCCGGTTGTGTTACGAAC 59.139 55.000 0.00 0.00 0.00 3.95
410 411 0.752054 AGTCCCGGTTGTGTTACGAA 59.248 50.000 0.00 0.00 0.00 3.85
411 412 1.541147 CTAGTCCCGGTTGTGTTACGA 59.459 52.381 0.00 0.00 0.00 3.43
412 413 1.403249 CCTAGTCCCGGTTGTGTTACG 60.403 57.143 0.00 0.00 0.00 3.18
413 414 1.066645 CCCTAGTCCCGGTTGTGTTAC 60.067 57.143 0.00 0.00 0.00 2.50
414 415 1.269012 CCCTAGTCCCGGTTGTGTTA 58.731 55.000 0.00 0.00 0.00 2.41
415 416 1.486145 CCCCTAGTCCCGGTTGTGTT 61.486 60.000 0.00 0.00 0.00 3.32
416 417 1.916777 CCCCTAGTCCCGGTTGTGT 60.917 63.158 0.00 0.00 0.00 3.72
417 418 2.666098 CCCCCTAGTCCCGGTTGTG 61.666 68.421 0.00 0.00 0.00 3.33
418 419 2.285144 CCCCCTAGTCCCGGTTGT 60.285 66.667 0.00 0.00 0.00 3.32
435 436 2.689771 TCGGGACTAAAGGCCCCC 60.690 66.667 15.63 0.00 41.50 5.40
436 437 2.588439 GTCGGGACTAAAGGCCCC 59.412 66.667 15.63 7.40 41.50 5.80
437 438 2.588439 GGTCGGGACTAAAGGCCC 59.412 66.667 11.29 11.29 41.11 5.80
438 439 1.559965 AAGGGTCGGGACTAAAGGCC 61.560 60.000 0.00 0.00 0.00 5.19
439 440 0.327259 AAAGGGTCGGGACTAAAGGC 59.673 55.000 0.00 0.00 0.00 4.35
440 441 2.169978 CCTAAAGGGTCGGGACTAAAGG 59.830 54.545 0.00 0.00 0.00 3.11
441 442 3.102204 TCCTAAAGGGTCGGGACTAAAG 58.898 50.000 0.00 0.00 36.25 1.85
442 443 3.188880 TCCTAAAGGGTCGGGACTAAA 57.811 47.619 0.00 0.00 36.25 1.85
443 444 2.925966 TCCTAAAGGGTCGGGACTAA 57.074 50.000 0.00 0.00 36.25 2.24
444 445 2.954792 GATCCTAAAGGGTCGGGACTA 58.045 52.381 0.00 0.00 35.31 2.59
445 446 1.790818 GATCCTAAAGGGTCGGGACT 58.209 55.000 0.00 0.00 35.31 3.85
451 452 6.948589 AGTAGAAAACAGATCCTAAAGGGTC 58.051 40.000 0.61 0.61 45.74 4.46
452 453 6.954352 AGTAGAAAACAGATCCTAAAGGGT 57.046 37.500 0.00 0.00 36.25 4.34
453 454 7.982354 CACTAGTAGAAAACAGATCCTAAAGGG 59.018 40.741 3.59 0.00 35.41 3.95
454 455 8.750298 TCACTAGTAGAAAACAGATCCTAAAGG 58.250 37.037 3.59 0.00 0.00 3.11
457 458 9.702253 AGATCACTAGTAGAAAACAGATCCTAA 57.298 33.333 3.59 0.00 0.00 2.69
459 460 9.875708 ATAGATCACTAGTAGAAAACAGATCCT 57.124 33.333 3.59 3.86 31.78 3.24
493 494 9.515226 ACTGGATCTGCACTTTTAGTATTTTTA 57.485 29.630 0.00 0.00 0.00 1.52
494 495 8.409358 ACTGGATCTGCACTTTTAGTATTTTT 57.591 30.769 0.00 0.00 0.00 1.94
495 496 8.409358 AACTGGATCTGCACTTTTAGTATTTT 57.591 30.769 0.00 0.00 0.00 1.82
496 497 9.515226 TTAACTGGATCTGCACTTTTAGTATTT 57.485 29.630 0.00 0.00 0.00 1.40
497 498 9.686683 ATTAACTGGATCTGCACTTTTAGTATT 57.313 29.630 0.00 0.00 0.00 1.89
498 499 9.331282 GATTAACTGGATCTGCACTTTTAGTAT 57.669 33.333 0.00 0.00 0.00 2.12
499 500 8.540388 AGATTAACTGGATCTGCACTTTTAGTA 58.460 33.333 0.00 0.00 32.79 1.82
500 501 7.398024 AGATTAACTGGATCTGCACTTTTAGT 58.602 34.615 0.00 0.00 32.79 2.24
501 502 7.856145 AGATTAACTGGATCTGCACTTTTAG 57.144 36.000 0.00 0.00 32.79 1.85
502 503 7.882791 TCAAGATTAACTGGATCTGCACTTTTA 59.117 33.333 0.00 0.00 34.24 1.52
503 504 6.716628 TCAAGATTAACTGGATCTGCACTTTT 59.283 34.615 0.00 0.00 34.24 2.27
504 505 6.240894 TCAAGATTAACTGGATCTGCACTTT 58.759 36.000 0.00 0.00 34.24 2.66
505 506 5.809001 TCAAGATTAACTGGATCTGCACTT 58.191 37.500 0.00 0.00 34.24 3.16
506 507 5.426689 TCAAGATTAACTGGATCTGCACT 57.573 39.130 0.00 0.00 34.24 4.40
507 508 6.297694 GATCAAGATTAACTGGATCTGCAC 57.702 41.667 11.94 0.00 46.90 4.57
527 528 7.500227 TCATTGGATTAACATGACTTGAGGATC 59.500 37.037 0.00 0.00 0.00 3.36
528 529 7.284034 GTCATTGGATTAACATGACTTGAGGAT 59.716 37.037 0.00 0.00 38.72 3.24
529 530 6.599244 GTCATTGGATTAACATGACTTGAGGA 59.401 38.462 0.00 0.00 38.72 3.71
530 531 6.600822 AGTCATTGGATTAACATGACTTGAGG 59.399 38.462 0.00 0.00 46.69 3.86
531 532 7.621428 AGTCATTGGATTAACATGACTTGAG 57.379 36.000 0.00 0.00 46.69 3.02
551 552 8.297426 CGCTCACCATTAGAGTAATATAAGTCA 58.703 37.037 0.00 0.00 35.55 3.41
552 553 7.273815 GCGCTCACCATTAGAGTAATATAAGTC 59.726 40.741 0.00 0.00 35.55 3.01
553 554 7.039644 AGCGCTCACCATTAGAGTAATATAAGT 60.040 37.037 2.64 0.00 35.55 2.24
554 555 7.316640 AGCGCTCACCATTAGAGTAATATAAG 58.683 38.462 2.64 0.00 35.55 1.73
555 556 7.228314 AGCGCTCACCATTAGAGTAATATAA 57.772 36.000 2.64 0.00 35.55 0.98
556 557 6.835819 AGCGCTCACCATTAGAGTAATATA 57.164 37.500 2.64 0.00 35.55 0.86
557 558 5.730296 AGCGCTCACCATTAGAGTAATAT 57.270 39.130 2.64 0.00 35.55 1.28
558 559 5.531122 AAGCGCTCACCATTAGAGTAATA 57.469 39.130 12.06 0.00 35.55 0.98
559 560 4.408182 AAGCGCTCACCATTAGAGTAAT 57.592 40.909 12.06 0.00 35.55 1.89
560 561 3.887621 AAGCGCTCACCATTAGAGTAA 57.112 42.857 12.06 0.00 35.55 2.24
561 562 4.158949 TGTTAAGCGCTCACCATTAGAGTA 59.841 41.667 12.06 0.00 35.55 2.59
562 563 3.056107 TGTTAAGCGCTCACCATTAGAGT 60.056 43.478 12.06 0.00 35.55 3.24
563 564 3.521560 TGTTAAGCGCTCACCATTAGAG 58.478 45.455 12.06 0.00 36.21 2.43
564 565 3.603158 TGTTAAGCGCTCACCATTAGA 57.397 42.857 12.06 0.00 0.00 2.10
565 566 3.623060 ACATGTTAAGCGCTCACCATTAG 59.377 43.478 12.06 4.82 0.00 1.73
566 567 3.605634 ACATGTTAAGCGCTCACCATTA 58.394 40.909 12.06 0.00 0.00 1.90
567 568 2.436417 ACATGTTAAGCGCTCACCATT 58.564 42.857 12.06 0.00 0.00 3.16
568 569 2.113860 ACATGTTAAGCGCTCACCAT 57.886 45.000 12.06 10.19 0.00 3.55
569 570 1.890876 AACATGTTAAGCGCTCACCA 58.109 45.000 12.06 7.95 0.00 4.17
570 571 2.989422 AAACATGTTAAGCGCTCACC 57.011 45.000 12.06 1.11 0.00 4.02
571 572 4.778904 TGTTAAACATGTTAAGCGCTCAC 58.221 39.130 12.06 11.92 0.00 3.51
572 573 5.621197 ATGTTAAACATGTTAAGCGCTCA 57.379 34.783 12.06 4.70 37.45 4.26
585 586 9.152595 TGTACGATACTAATTGCATGTTAAACA 57.847 29.630 0.00 0.00 0.00 2.83
604 605 9.056005 AGCACAAACATTGATATTATGTACGAT 57.944 29.630 0.00 0.00 35.26 3.73
605 606 8.432110 AGCACAAACATTGATATTATGTACGA 57.568 30.769 0.00 0.00 35.26 3.43
667 668 9.052759 GGTAGGATATCTATTTTCTCGCAAAAA 57.947 33.333 2.05 0.00 32.99 1.94
668 669 8.429641 AGGTAGGATATCTATTTTCTCGCAAAA 58.570 33.333 2.05 0.00 23.31 2.44
669 670 7.963532 AGGTAGGATATCTATTTTCTCGCAAA 58.036 34.615 2.05 0.00 23.31 3.68
670 671 7.540474 AGGTAGGATATCTATTTTCTCGCAA 57.460 36.000 2.05 0.00 23.31 4.85
671 672 8.824756 ATAGGTAGGATATCTATTTTCTCGCA 57.175 34.615 2.05 0.00 42.17 5.10
681 682 9.601810 ACACATTGACAATAGGTAGGATATCTA 57.398 33.333 0.00 0.00 38.91 1.98
682 683 8.497910 ACACATTGACAATAGGTAGGATATCT 57.502 34.615 0.00 0.00 35.27 1.98
711 712 9.407380 TGCAGGCTGATATTAAGAAGAAAAATA 57.593 29.630 20.86 0.00 0.00 1.40
712 713 8.297470 TGCAGGCTGATATTAAGAAGAAAAAT 57.703 30.769 20.86 0.00 0.00 1.82
713 714 7.701539 TGCAGGCTGATATTAAGAAGAAAAA 57.298 32.000 20.86 0.00 0.00 1.94
714 715 7.886629 ATGCAGGCTGATATTAAGAAGAAAA 57.113 32.000 20.86 0.00 0.00 2.29
715 716 7.682741 GCAATGCAGGCTGATATTAAGAAGAAA 60.683 37.037 20.86 0.00 0.00 2.52
716 717 6.238842 GCAATGCAGGCTGATATTAAGAAGAA 60.239 38.462 20.86 0.00 0.00 2.52
717 718 5.240183 GCAATGCAGGCTGATATTAAGAAGA 59.760 40.000 20.86 0.00 0.00 2.87
718 719 5.009310 TGCAATGCAGGCTGATATTAAGAAG 59.991 40.000 20.86 6.74 33.32 2.85
719 720 4.888823 TGCAATGCAGGCTGATATTAAGAA 59.111 37.500 20.86 0.00 33.32 2.52
720 721 4.276678 GTGCAATGCAGGCTGATATTAAGA 59.723 41.667 20.86 2.79 40.08 2.10
721 722 4.543692 GTGCAATGCAGGCTGATATTAAG 58.456 43.478 20.86 8.04 40.08 1.85
722 723 3.003585 CGTGCAATGCAGGCTGATATTAA 59.996 43.478 20.86 6.97 40.08 1.40
741 742 4.466567 TTCACAAGTAAATGAGCACGTG 57.533 40.909 12.28 12.28 0.00 4.49
746 747 8.406172 TCTTTTGTTTTCACAAGTAAATGAGC 57.594 30.769 0.00 0.00 43.92 4.26
748 749 8.868916 GCTTCTTTTGTTTTCACAAGTAAATGA 58.131 29.630 0.00 0.00 43.92 2.57
757 758 6.219473 TGTCTTTGCTTCTTTTGTTTTCACA 58.781 32.000 0.00 0.00 0.00 3.58
809 810 3.368822 TCGTACAACGAGGGGTGG 58.631 61.111 0.00 0.00 46.73 4.61
822 823 8.953368 TCTTACTGTCTTACTGTATCATCGTA 57.047 34.615 0.00 0.00 33.53 3.43
836 837 7.015389 ACAAGCTAGGTTTACTCTTACTGTCTT 59.985 37.037 3.96 0.00 0.00 3.01
838 839 6.689554 ACAAGCTAGGTTTACTCTTACTGTC 58.310 40.000 3.96 0.00 0.00 3.51
839 840 6.667558 ACAAGCTAGGTTTACTCTTACTGT 57.332 37.500 3.96 0.00 0.00 3.55
840 841 7.272948 CGTTACAAGCTAGGTTTACTCTTACTG 59.727 40.741 3.96 0.00 0.00 2.74
841 842 7.175641 TCGTTACAAGCTAGGTTTACTCTTACT 59.824 37.037 3.96 0.00 0.00 2.24
842 843 7.308435 TCGTTACAAGCTAGGTTTACTCTTAC 58.692 38.462 3.96 0.00 0.00 2.34
843 844 7.391554 TCTCGTTACAAGCTAGGTTTACTCTTA 59.608 37.037 3.96 0.00 0.00 2.10
860 876 1.202675 GGTGGTTGGGTTCTCGTTACA 60.203 52.381 0.00 0.00 0.00 2.41
867 883 1.412453 TACTGCGGTGGTTGGGTTCT 61.412 55.000 8.92 0.00 0.00 3.01
880 896 4.093703 TGTTAATTCCGAATGGTTACTGCG 59.906 41.667 0.00 0.00 36.30 5.18
1053 1072 1.503818 GCGCGAAGAACAGGGAAACA 61.504 55.000 12.10 0.00 0.00 2.83
1054 1073 1.206831 GCGCGAAGAACAGGGAAAC 59.793 57.895 12.10 0.00 0.00 2.78
1112 1134 3.557595 CCAGCAGATATTCAAGTTCGTCC 59.442 47.826 0.00 0.00 0.00 4.79
1221 1252 0.673956 GGCTTTGGACGAGAGGAACC 60.674 60.000 0.00 0.00 0.00 3.62
1316 1354 1.284982 CCAGTGTTTGCTCGTCTCCG 61.285 60.000 0.00 0.00 0.00 4.63
1359 1397 3.670637 GATGCTGACGAGGCAGGCA 62.671 63.158 8.17 6.79 43.15 4.75
1898 1938 1.591594 CGCCGGAATATGCGTGTCT 60.592 57.895 5.05 0.00 45.43 3.41
2147 2226 2.679336 TCTGTCATGCACACACATATGC 59.321 45.455 1.58 0.00 42.40 3.14
2148 2227 4.950434 TTCTGTCATGCACACACATATG 57.050 40.909 0.00 0.00 0.00 1.78
2149 2228 7.628769 TTAATTCTGTCATGCACACACATAT 57.371 32.000 0.00 0.00 0.00 1.78
2150 2229 7.628769 ATTAATTCTGTCATGCACACACATA 57.371 32.000 0.00 0.00 0.00 2.29
2151 2230 5.963176 TTAATTCTGTCATGCACACACAT 57.037 34.783 0.00 0.00 0.00 3.21
2152 2231 5.963176 ATTAATTCTGTCATGCACACACA 57.037 34.783 0.00 0.00 0.00 3.72
2153 2232 6.963242 CACTATTAATTCTGTCATGCACACAC 59.037 38.462 0.00 0.00 0.00 3.82
2154 2233 6.654582 ACACTATTAATTCTGTCATGCACACA 59.345 34.615 0.00 0.00 0.00 3.72
2239 2322 4.023291 AGTTTTCAACTGGACAACCATGT 58.977 39.130 0.00 0.00 45.87 3.21
2246 2329 6.834168 AAAGAAGAAGTTTTCAACTGGACA 57.166 33.333 0.00 0.00 41.91 4.02
2387 2470 6.698380 TCCTAATAGCCTAATTTCATCGGTC 58.302 40.000 0.00 0.00 0.00 4.79
2459 2554 9.741168 CTATAGAAAACAATAAATACGCATCCG 57.259 33.333 0.00 0.00 41.14 4.18
2460 2555 9.543018 GCTATAGAAAACAATAAATACGCATCC 57.457 33.333 3.21 0.00 0.00 3.51
2463 2558 9.320352 TGAGCTATAGAAAACAATAAATACGCA 57.680 29.630 3.21 0.00 0.00 5.24
2632 2729 8.595421 TGTGTCATAACCATTAACCAAGTAGTA 58.405 33.333 0.00 0.00 0.00 1.82
2633 2730 7.389607 GTGTGTCATAACCATTAACCAAGTAGT 59.610 37.037 0.00 0.00 0.00 2.73
2634 2731 7.389330 TGTGTGTCATAACCATTAACCAAGTAG 59.611 37.037 0.00 0.00 0.00 2.57
2660 2757 4.024048 CGTTGCTTAAGACCTCACACAATT 60.024 41.667 6.67 0.00 0.00 2.32
2679 2776 4.983215 TGTGTGTTTAGTATGCTCGTTG 57.017 40.909 0.00 0.00 0.00 4.10
2706 2803 5.354234 TGACAGTTTCTTGTTGAAAGGAGTC 59.646 40.000 0.00 0.00 44.36 3.36
2726 2823 1.754745 GGGTGAGCTCCACTTGACA 59.245 57.895 12.15 0.00 45.03 3.58
2778 2875 8.349245 CGAAGTCACTGAAGTAGATCATTAGAT 58.651 37.037 0.00 0.00 37.13 1.98
2780 2877 6.915300 CCGAAGTCACTGAAGTAGATCATTAG 59.085 42.308 0.00 0.00 0.00 1.73
2781 2878 6.680625 GCCGAAGTCACTGAAGTAGATCATTA 60.681 42.308 0.00 0.00 0.00 1.90
3013 3116 4.106029 TGCTATGTCGACCTTGTTAGAC 57.894 45.455 14.12 4.31 0.00 2.59
3025 3128 8.818141 TTCTAATCCTCTATTTTGCTATGTCG 57.182 34.615 0.00 0.00 0.00 4.35
3057 3160 5.934935 AACGATCGTTCCTATTGTTTTGT 57.065 34.783 27.11 0.18 32.09 2.83
3073 3180 5.601662 TCTCTATGTTCCATCCAAACGATC 58.398 41.667 0.00 0.00 0.00 3.69
3138 3247 6.438259 TTCGACTCCTATGACTCAGTTTAG 57.562 41.667 0.00 0.00 0.00 1.85
3144 3253 3.898482 TGGATTCGACTCCTATGACTCA 58.102 45.455 21.08 0.00 36.20 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.