Multiple sequence alignment - TraesCS1D01G230300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G230300 chr1D 100.000 2564 0 0 1 2564 318499092 318496529 0.000000e+00 4735.0
1 TraesCS1D01G230300 chr1D 87.218 1416 130 28 643 2030 318722079 318723471 0.000000e+00 1565.0
2 TraesCS1D01G230300 chr1B 94.990 2076 88 11 495 2564 430618583 430616518 0.000000e+00 3243.0
3 TraesCS1D01G230300 chr1B 85.825 1418 152 30 644 2030 431032634 431034033 0.000000e+00 1459.0
4 TraesCS1D01G230300 chr1B 80.892 314 27 11 1957 2268 430886974 430886692 1.540000e-52 217.0
5 TraesCS1D01G230300 chr1A 90.355 2281 145 32 13 2268 399827307 399825077 0.000000e+00 2924.0
6 TraesCS1D01G230300 chr1A 86.243 1432 134 36 624 2030 405093042 405091649 0.000000e+00 1495.0
7 TraesCS1D01G230300 chr1A 86.765 204 25 2 2066 2268 405360129 405360331 2.570000e-55 226.0
8 TraesCS1D01G230300 chr3D 75.410 244 35 19 14 240 554967244 554967479 7.550000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G230300 chr1D 318496529 318499092 2563 True 4735 4735 100.000 1 2564 1 chr1D.!!$R1 2563
1 TraesCS1D01G230300 chr1D 318722079 318723471 1392 False 1565 1565 87.218 643 2030 1 chr1D.!!$F1 1387
2 TraesCS1D01G230300 chr1B 430616518 430618583 2065 True 3243 3243 94.990 495 2564 1 chr1B.!!$R1 2069
3 TraesCS1D01G230300 chr1B 431032634 431034033 1399 False 1459 1459 85.825 644 2030 1 chr1B.!!$F1 1386
4 TraesCS1D01G230300 chr1A 399825077 399827307 2230 True 2924 2924 90.355 13 2268 1 chr1A.!!$R1 2255
5 TraesCS1D01G230300 chr1A 405091649 405093042 1393 True 1495 1495 86.243 624 2030 1 chr1A.!!$R2 1406

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
162 168 0.173481 TCGGGAAAGTCAGAGATGCG 59.827 55.0 0.0 0.0 0.0 4.73 F
877 902 0.678048 AATCTGCTTGGGAAGGACGC 60.678 55.0 0.0 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1056 1091 1.291588 CCAGTGCTTGCTCGTCTCT 59.708 57.895 0.0 0.00 0.00 3.10 R
2239 2320 0.035534 TTTCTATGGCGCCTGCTTGA 60.036 50.000 29.7 15.22 42.25 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 1.156736 CCGAGCCAATTCTTCGTGTT 58.843 50.000 0.00 0.00 0.00 3.32
61 62 3.138304 CCAATTCTTCGTGTTGGTCTCA 58.862 45.455 0.00 0.00 38.03 3.27
63 64 2.971660 TTCTTCGTGTTGGTCTCACA 57.028 45.000 0.00 0.00 35.79 3.58
66 67 2.128035 CTTCGTGTTGGTCTCACAGTC 58.872 52.381 0.00 0.00 35.79 3.51
88 89 0.683828 TTATCTCCGCCACCCACGTA 60.684 55.000 0.00 0.00 0.00 3.57
103 109 3.087906 GTACCCCCGCTGGTGGAT 61.088 66.667 8.36 0.00 39.53 3.41
123 129 0.461961 GCCGATGTACTTCCTCTGCT 59.538 55.000 3.35 0.00 0.00 4.24
125 131 1.565305 CGATGTACTTCCTCTGCTGC 58.435 55.000 3.35 0.00 0.00 5.25
127 133 2.548875 GATGTACTTCCTCTGCTGCTG 58.451 52.381 0.00 0.00 0.00 4.41
132 138 3.921767 TTCCTCTGCTGCTGTCGCG 62.922 63.158 0.00 0.00 39.65 5.87
154 160 0.903454 GAGGGAGGTCGGGAAAGTCA 60.903 60.000 0.00 0.00 0.00 3.41
162 168 0.173481 TCGGGAAAGTCAGAGATGCG 59.827 55.000 0.00 0.00 0.00 4.73
166 172 1.066858 GGAAAGTCAGAGATGCGGTGA 60.067 52.381 0.00 0.00 0.00 4.02
172 178 2.107953 GAGATGCGGTGAGAGGGC 59.892 66.667 0.00 0.00 0.00 5.19
179 186 2.109181 GGTGAGAGGGCCGCATAC 59.891 66.667 10.70 7.70 0.00 2.39
180 187 2.109181 GTGAGAGGGCCGCATACC 59.891 66.667 10.70 0.00 0.00 2.73
181 188 2.364973 TGAGAGGGCCGCATACCA 60.365 61.111 10.70 0.00 0.00 3.25
183 190 3.816367 GAGAGGGCCGCATACCAGC 62.816 68.421 10.70 0.00 0.00 4.85
208 215 2.665603 GCGGCTTCTTGAGGAGGT 59.334 61.111 0.00 0.00 0.00 3.85
211 218 1.377856 GGCTTCTTGAGGAGGTGCC 60.378 63.158 0.00 0.00 37.13 5.01
212 219 1.743252 GCTTCTTGAGGAGGTGCCG 60.743 63.158 0.00 0.00 43.43 5.69
213 220 1.743252 CTTCTTGAGGAGGTGCCGC 60.743 63.158 0.00 0.00 43.43 6.53
214 221 2.177594 CTTCTTGAGGAGGTGCCGCT 62.178 60.000 0.00 0.00 43.43 5.52
215 222 1.768684 TTCTTGAGGAGGTGCCGCTT 61.769 55.000 0.00 0.00 43.43 4.68
216 223 2.032528 TTGAGGAGGTGCCGCTTG 59.967 61.111 0.00 0.00 43.43 4.01
217 224 2.454832 CTTGAGGAGGTGCCGCTTGA 62.455 60.000 0.00 0.00 43.43 3.02
218 225 2.050836 TTGAGGAGGTGCCGCTTGAA 62.051 55.000 0.00 0.00 43.43 2.69
219 226 1.743252 GAGGAGGTGCCGCTTGAAG 60.743 63.158 0.00 0.00 43.43 3.02
220 227 2.172483 GAGGAGGTGCCGCTTGAAGA 62.172 60.000 0.00 0.00 43.43 2.87
221 228 2.035442 GGAGGTGCCGCTTGAAGAC 61.035 63.158 0.00 0.00 0.00 3.01
222 229 2.357517 AGGTGCCGCTTGAAGACG 60.358 61.111 0.00 0.00 0.00 4.18
223 230 4.090057 GGTGCCGCTTGAAGACGC 62.090 66.667 0.00 0.00 0.00 5.19
299 306 4.418328 CGGGGTTCGGCCATTGGA 62.418 66.667 6.95 0.00 39.65 3.53
365 373 2.687781 GGGGACGGGGAAAAGTAGA 58.312 57.895 0.00 0.00 0.00 2.59
368 376 1.678123 GGGACGGGGAAAAGTAGAAGC 60.678 57.143 0.00 0.00 0.00 3.86
369 377 1.002773 GGACGGGGAAAAGTAGAAGCA 59.997 52.381 0.00 0.00 0.00 3.91
371 379 1.975680 ACGGGGAAAAGTAGAAGCAGA 59.024 47.619 0.00 0.00 0.00 4.26
372 380 2.289506 ACGGGGAAAAGTAGAAGCAGAC 60.290 50.000 0.00 0.00 0.00 3.51
374 382 2.028385 GGGGAAAAGTAGAAGCAGACGA 60.028 50.000 0.00 0.00 0.00 4.20
376 384 3.056749 GGGAAAAGTAGAAGCAGACGAGA 60.057 47.826 0.00 0.00 0.00 4.04
377 385 4.382147 GGGAAAAGTAGAAGCAGACGAGAT 60.382 45.833 0.00 0.00 0.00 2.75
378 386 4.564769 GGAAAAGTAGAAGCAGACGAGATG 59.435 45.833 0.00 0.00 0.00 2.90
379 387 3.791973 AAGTAGAAGCAGACGAGATGG 57.208 47.619 0.00 0.00 0.00 3.51
382 390 3.764434 AGTAGAAGCAGACGAGATGGAAA 59.236 43.478 0.00 0.00 0.00 3.13
383 391 3.244033 AGAAGCAGACGAGATGGAAAG 57.756 47.619 0.00 0.00 0.00 2.62
384 392 2.093764 AGAAGCAGACGAGATGGAAAGG 60.094 50.000 0.00 0.00 0.00 3.11
386 394 2.114616 AGCAGACGAGATGGAAAGGAT 58.885 47.619 0.00 0.00 0.00 3.24
388 396 2.159043 GCAGACGAGATGGAAAGGATGA 60.159 50.000 0.00 0.00 0.00 2.92
435 443 3.131577 TCGTCAAGCGGTGGAGTAAATAT 59.868 43.478 0.00 0.00 41.72 1.28
442 450 7.870954 TCAAGCGGTGGAGTAAATATATGTTAG 59.129 37.037 0.00 0.00 0.00 2.34
455 463 6.770746 ATATATGTTAGGGATAAGCGACGT 57.229 37.500 0.00 0.00 0.00 4.34
456 464 3.814005 ATGTTAGGGATAAGCGACGTT 57.186 42.857 0.00 0.00 0.00 3.99
468 477 3.452755 AGCGACGTTGGATAATGATCA 57.547 42.857 4.64 0.00 33.27 2.92
473 482 4.991056 CGACGTTGGATAATGATCATCCTT 59.009 41.667 9.06 0.00 42.21 3.36
474 483 5.119279 CGACGTTGGATAATGATCATCCTTC 59.881 44.000 9.06 6.33 42.21 3.46
478 487 6.260714 CGTTGGATAATGATCATCCTTCAACA 59.739 38.462 26.04 12.80 42.21 3.33
479 488 7.519488 CGTTGGATAATGATCATCCTTCAACAG 60.519 40.741 26.04 19.34 42.21 3.16
485 494 7.488187 AATGATCATCCTTCAACAGTTATCG 57.512 36.000 9.06 0.00 0.00 2.92
487 496 4.819105 TCATCCTTCAACAGTTATCGGT 57.181 40.909 0.00 0.00 0.00 4.69
492 501 4.221924 TCCTTCAACAGTTATCGGTGATCA 59.778 41.667 0.00 0.00 0.00 2.92
501 510 1.333177 ATCGGTGATCAGCTAGGTCC 58.667 55.000 21.73 4.84 0.00 4.46
503 512 1.742768 GGTGATCAGCTAGGTCCCG 59.257 63.158 17.59 0.00 0.00 5.14
504 513 1.068250 GTGATCAGCTAGGTCCCGC 59.932 63.158 0.00 0.00 0.00 6.13
508 517 1.271102 GATCAGCTAGGTCCCGCTTAG 59.729 57.143 0.63 0.00 33.45 2.18
510 519 1.133450 TCAGCTAGGTCCCGCTTAGAT 60.133 52.381 0.63 0.00 33.45 1.98
537 546 3.790089 ACCCAGGTTTTTACTCCTCTG 57.210 47.619 0.00 0.00 30.91 3.35
540 549 3.559384 CCCAGGTTTTTACTCCTCTGACC 60.559 52.174 0.00 0.00 30.91 4.02
568 577 3.554934 AGGCGATCAATTAGAAATGCCA 58.445 40.909 2.50 0.00 41.58 4.92
574 583 6.349115 GCGATCAATTAGAAATGCCATGAGAT 60.349 38.462 0.00 0.00 0.00 2.75
697 707 4.665009 ACCCCAAGAGCCAATATTATCTCA 59.335 41.667 14.74 0.00 0.00 3.27
698 708 5.314306 ACCCCAAGAGCCAATATTATCTCAT 59.686 40.000 14.74 4.35 0.00 2.90
718 728 5.762279 TCATCCTCCACCCTTTTATAAACC 58.238 41.667 0.00 0.00 0.00 3.27
791 811 4.783227 TCTTCCCCATTCTTAGTTGCTACT 59.217 41.667 6.00 6.00 38.44 2.57
838 862 1.275573 GTCCCTCGTGCTCCTTTTAGT 59.724 52.381 0.00 0.00 0.00 2.24
877 902 0.678048 AATCTGCTTGGGAAGGACGC 60.678 55.000 0.00 0.00 0.00 5.19
1068 1103 1.226717 GGCGGTAGAGACGAGCAAG 60.227 63.158 0.00 0.00 33.21 4.01
1754 1791 7.795272 GGTTTGTTGTGTTCTTGTTACTATACG 59.205 37.037 0.00 0.00 0.00 3.06
1911 1976 1.063321 GTGTGATTGTGTGCGTGACAA 59.937 47.619 0.00 0.00 35.91 3.18
2109 2185 4.271291 GTCCAATTGAACTCGCCTAGAATC 59.729 45.833 7.12 0.00 0.00 2.52
2239 2320 4.268767 GACTTCGGTCGTTCAAAGTTTT 57.731 40.909 0.00 0.00 35.10 2.43
2301 2382 1.742880 GCATCGCCTGTCTTCAGCA 60.743 57.895 0.00 0.00 40.09 4.41
2346 2427 1.867233 CGCGCAGATGCTTAATTAGGT 59.133 47.619 8.75 0.00 39.32 3.08
2391 2472 5.930209 TGGGGAAAATAGAGGATTGCTAT 57.070 39.130 0.00 0.00 0.00 2.97
2392 2473 5.634118 TGGGGAAAATAGAGGATTGCTATG 58.366 41.667 0.00 0.00 0.00 2.23
2396 2477 6.601217 GGGAAAATAGAGGATTGCTATGATCC 59.399 42.308 0.00 0.00 42.79 3.36
2408 2489 0.478072 TATGATCCGCCTGCCCATTT 59.522 50.000 0.00 0.00 0.00 2.32
2503 2584 8.131731 AGAGCTCAGACTTTGTGTAAAATTTTC 58.868 33.333 17.77 0.37 0.00 2.29
2530 2612 7.613551 TGAAATAGACTAGGGGAATTCCTAC 57.386 40.000 23.63 16.47 38.30 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.047179 GCTCGGGTCCTTCCACAC 60.047 66.667 0.00 0.00 38.11 3.82
26 27 1.497309 AATTGGCTCGGGTCCTTCCA 61.497 55.000 0.00 0.00 38.11 3.53
54 55 2.753452 GAGATAACCGACTGTGAGACCA 59.247 50.000 0.00 0.00 0.00 4.02
95 101 0.465705 AGTACATCGGCATCCACCAG 59.534 55.000 0.00 0.00 0.00 4.00
99 105 1.412710 GAGGAAGTACATCGGCATCCA 59.587 52.381 0.00 0.00 0.00 3.41
103 109 0.175760 GCAGAGGAAGTACATCGGCA 59.824 55.000 0.00 0.00 46.17 5.69
154 160 2.430610 GCCCTCTCACCGCATCTCT 61.431 63.158 0.00 0.00 0.00 3.10
162 168 2.109181 GTATGCGGCCCTCTCACC 59.891 66.667 0.00 0.00 0.00 4.02
166 172 3.866582 GCTGGTATGCGGCCCTCT 61.867 66.667 0.00 0.00 0.00 3.69
188 195 4.760047 TCCTCAAGAAGCCGCCGC 62.760 66.667 0.00 0.00 0.00 6.53
191 198 1.743252 CACCTCCTCAAGAAGCCGC 60.743 63.158 0.00 0.00 0.00 6.53
194 201 1.743252 CGGCACCTCCTCAAGAAGC 60.743 63.158 0.00 0.00 0.00 3.86
213 220 3.843240 GAGCCGCGCGTCTTCAAG 61.843 66.667 29.95 12.53 0.00 3.02
214 221 4.656117 TGAGCCGCGCGTCTTCAA 62.656 61.111 29.95 8.46 0.00 2.69
273 280 2.435938 CGAACCCCGTGGATGGTG 60.436 66.667 0.00 0.00 34.34 4.17
274 281 3.712907 CCGAACCCCGTGGATGGT 61.713 66.667 0.00 0.00 36.06 3.55
355 363 4.175787 TCTCGTCTGCTTCTACTTTTCC 57.824 45.455 0.00 0.00 0.00 3.13
357 365 4.220821 TCCATCTCGTCTGCTTCTACTTTT 59.779 41.667 0.00 0.00 0.00 2.27
359 367 3.357203 TCCATCTCGTCTGCTTCTACTT 58.643 45.455 0.00 0.00 0.00 2.24
360 368 3.006112 TCCATCTCGTCTGCTTCTACT 57.994 47.619 0.00 0.00 0.00 2.57
361 369 3.784701 TTCCATCTCGTCTGCTTCTAC 57.215 47.619 0.00 0.00 0.00 2.59
364 372 2.093973 TCCTTTCCATCTCGTCTGCTTC 60.094 50.000 0.00 0.00 0.00 3.86
365 373 1.902508 TCCTTTCCATCTCGTCTGCTT 59.097 47.619 0.00 0.00 0.00 3.91
368 376 3.131933 ACTCATCCTTTCCATCTCGTCTG 59.868 47.826 0.00 0.00 0.00 3.51
369 377 3.131933 CACTCATCCTTTCCATCTCGTCT 59.868 47.826 0.00 0.00 0.00 4.18
371 379 2.169352 CCACTCATCCTTTCCATCTCGT 59.831 50.000 0.00 0.00 0.00 4.18
372 380 2.432146 TCCACTCATCCTTTCCATCTCG 59.568 50.000 0.00 0.00 0.00 4.04
374 382 3.729108 TCTCCACTCATCCTTTCCATCT 58.271 45.455 0.00 0.00 0.00 2.90
376 384 5.463051 AAATCTCCACTCATCCTTTCCAT 57.537 39.130 0.00 0.00 0.00 3.41
377 385 4.934797 AAATCTCCACTCATCCTTTCCA 57.065 40.909 0.00 0.00 0.00 3.53
414 422 1.722011 ATTTACTCCACCGCTTGACG 58.278 50.000 0.00 0.00 43.15 4.35
415 423 5.989777 ACATATATTTACTCCACCGCTTGAC 59.010 40.000 0.00 0.00 0.00 3.18
416 424 6.169557 ACATATATTTACTCCACCGCTTGA 57.830 37.500 0.00 0.00 0.00 3.02
417 425 6.861065 AACATATATTTACTCCACCGCTTG 57.139 37.500 0.00 0.00 0.00 4.01
418 426 7.159372 CCTAACATATATTTACTCCACCGCTT 58.841 38.462 0.00 0.00 0.00 4.68
435 443 4.500205 CCAACGTCGCTTATCCCTAACATA 60.500 45.833 0.00 0.00 0.00 2.29
442 450 2.806608 TATCCAACGTCGCTTATCCC 57.193 50.000 0.00 0.00 0.00 3.85
455 463 7.348815 ACTGTTGAAGGATGATCATTATCCAA 58.651 34.615 10.14 9.51 45.28 3.53
456 464 6.903516 ACTGTTGAAGGATGATCATTATCCA 58.096 36.000 10.14 3.91 45.28 3.41
468 477 4.819105 TCACCGATAACTGTTGAAGGAT 57.181 40.909 14.02 0.00 0.00 3.24
473 482 3.195610 AGCTGATCACCGATAACTGTTGA 59.804 43.478 2.69 0.00 0.00 3.18
474 483 3.525537 AGCTGATCACCGATAACTGTTG 58.474 45.455 2.69 0.00 0.00 3.33
478 487 3.567397 ACCTAGCTGATCACCGATAACT 58.433 45.455 0.00 0.00 0.00 2.24
479 488 3.305471 GGACCTAGCTGATCACCGATAAC 60.305 52.174 0.00 0.00 0.00 1.89
485 494 1.742768 CGGGACCTAGCTGATCACC 59.257 63.158 0.00 0.00 0.00 4.02
487 496 0.687757 AAGCGGGACCTAGCTGATCA 60.688 55.000 14.15 0.00 43.78 2.92
492 501 1.133450 TCATCTAAGCGGGACCTAGCT 60.133 52.381 8.82 8.82 46.97 3.32
501 510 3.458189 CTGGGTTTACTCATCTAAGCGG 58.542 50.000 0.00 0.00 0.00 5.52
503 512 4.489306 ACCTGGGTTTACTCATCTAAGC 57.511 45.455 0.00 0.00 0.00 3.09
504 513 7.761038 AAAAACCTGGGTTTACTCATCTAAG 57.239 36.000 10.68 0.00 46.22 2.18
537 546 2.806608 TTGATCGCCTATAACCGGTC 57.193 50.000 8.04 0.00 35.28 4.79
540 549 7.456253 CATTTCTAATTGATCGCCTATAACCG 58.544 38.462 0.00 0.00 0.00 4.44
568 577 6.377912 AGGTTGGCTCTTACTACTATCTCAT 58.622 40.000 0.00 0.00 0.00 2.90
574 583 5.463051 ACCTAGGTTGGCTCTTACTACTA 57.537 43.478 9.21 0.00 0.00 1.82
578 587 4.422984 TGTAACCTAGGTTGGCTCTTACT 58.577 43.478 33.19 8.92 38.92 2.24
697 707 4.078805 GGGGTTTATAAAAGGGTGGAGGAT 60.079 45.833 0.00 0.00 0.00 3.24
698 708 3.270169 GGGGTTTATAAAAGGGTGGAGGA 59.730 47.826 0.00 0.00 0.00 3.71
728 738 1.975680 GGTGGTGTAGGAAAGTGGAGA 59.024 52.381 0.00 0.00 0.00 3.71
877 902 9.691795 GTTTTACAAATTACAAACGAAAAAGGG 57.308 29.630 0.00 0.00 0.00 3.95
957 988 2.087009 GCTTCGGACGAGTGGAACG 61.087 63.158 0.00 0.00 45.86 3.95
1056 1091 1.291588 CCAGTGCTTGCTCGTCTCT 59.708 57.895 0.00 0.00 0.00 3.10
1131 1166 5.656416 CCAGAAGTAGAAGAAGATGAGGACT 59.344 44.000 0.00 0.00 0.00 3.85
1132 1167 5.681179 GCCAGAAGTAGAAGAAGATGAGGAC 60.681 48.000 0.00 0.00 0.00 3.85
1754 1791 2.548057 CTGACGAGAGCCAGAGAGATAC 59.452 54.545 0.00 0.00 45.14 2.24
2109 2185 6.258230 TGTTTCTTGATTTCATGTGCCTAG 57.742 37.500 0.00 0.00 0.00 3.02
2239 2320 0.035534 TTTCTATGGCGCCTGCTTGA 60.036 50.000 29.70 15.22 42.25 3.02
2301 2382 6.701400 GCTTTTATTCGCCATGGTTATTCAAT 59.299 34.615 14.67 5.56 0.00 2.57
2391 2472 1.753848 CAAATGGGCAGGCGGATCA 60.754 57.895 0.00 0.00 0.00 2.92
2392 2473 1.037030 TTCAAATGGGCAGGCGGATC 61.037 55.000 0.00 0.00 0.00 3.36
2396 2477 0.819582 AGAATTCAAATGGGCAGGCG 59.180 50.000 8.44 0.00 0.00 5.52
2503 2584 8.442660 AGGAATTCCCCTAGTCTATTTCATAG 57.557 38.462 21.22 0.00 34.07 2.23
2521 2603 7.631717 AAGCCTTGATTTGTAGTAGGAATTC 57.368 36.000 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.