Multiple sequence alignment - TraesCS1D01G230200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G230200 chr1D 100.000 2999 0 0 1 2999 318480086 318477088 0.000000e+00 5539.0
1 TraesCS1D01G230200 chr1D 91.688 385 23 6 381 761 17995196 17995575 2.650000e-145 525.0
2 TraesCS1D01G230200 chr1A 93.014 1274 47 11 761 2021 399593182 399591938 0.000000e+00 1821.0
3 TraesCS1D01G230200 chr1A 93.522 247 16 0 140 386 399593424 399593178 4.720000e-98 368.0
4 TraesCS1D01G230200 chr1A 91.096 146 13 0 1 146 399594382 399594237 6.560000e-47 198.0
5 TraesCS1D01G230200 chr1B 90.985 1309 56 20 761 2025 430348149 430346859 0.000000e+00 1707.0
6 TraesCS1D01G230200 chr1B 92.713 247 15 2 140 386 430453075 430452832 1.320000e-93 353.0
7 TraesCS1D01G230200 chr1B 84.364 275 23 3 761 1020 430452836 430452567 4.960000e-63 252.0
8 TraesCS1D01G230200 chr1B 91.096 146 10 1 228 370 430348292 430348147 8.480000e-46 195.0
9 TraesCS1D01G230200 chr1B 90.625 128 12 0 1 128 430454066 430453939 1.430000e-38 171.0
10 TraesCS1D01G230200 chr1B 86.607 112 13 2 33 143 561766172 561766062 4.060000e-24 122.0
11 TraesCS1D01G230200 chr7D 97.622 967 18 3 2035 2999 62283379 62282416 0.000000e+00 1653.0
12 TraesCS1D01G230200 chr7D 91.349 393 22 8 376 762 66410978 66411364 7.360000e-146 527.0
13 TraesCS1D01G230200 chr7D 91.473 387 23 7 381 762 218475622 218475241 9.530000e-145 523.0
14 TraesCS1D01G230200 chr7D 82.883 111 19 0 33 143 138408686 138408576 1.900000e-17 100.0
15 TraesCS1D01G230200 chr2D 97.786 768 13 2 2230 2996 567640372 567641136 0.000000e+00 1321.0
16 TraesCS1D01G230200 chr2D 91.842 380 22 6 386 761 602420888 602421262 3.430000e-144 521.0
17 TraesCS1D01G230200 chr2D 98.058 206 4 0 2035 2240 567636229 567636434 2.840000e-95 359.0
18 TraesCS1D01G230200 chr2D 83.784 111 18 0 33 143 47426555 47426665 4.090000e-19 106.0
19 TraesCS1D01G230200 chrUn 92.167 383 20 7 385 762 24426384 24426007 1.580000e-147 532.0
20 TraesCS1D01G230200 chrUn 79.592 441 53 18 2349 2760 69463553 69463121 6.330000e-72 281.0
21 TraesCS1D01G230200 chr7A 91.667 384 22 7 382 761 542091615 542091992 9.530000e-145 523.0
22 TraesCS1D01G230200 chr6D 91.623 382 22 7 385 761 147693008 147693384 1.230000e-143 520.0
23 TraesCS1D01G230200 chr6A 91.384 383 25 5 382 761 522946055 522946432 4.430000e-143 518.0
24 TraesCS1D01G230200 chr6A 91.026 390 23 9 378 762 499430187 499430569 1.590000e-142 516.0
25 TraesCS1D01G230200 chr5D 83.929 112 16 2 33 143 327645974 327645864 4.090000e-19 106.0
26 TraesCS1D01G230200 chr5A 83.495 103 17 0 41 143 667185852 667185750 2.460000e-16 97.1
27 TraesCS1D01G230200 chr4A 80.870 115 18 3 33 143 697364161 697364047 1.480000e-13 87.9
28 TraesCS1D01G230200 chr4A 80.357 112 21 1 33 143 82390778 82390889 1.920000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G230200 chr1D 318477088 318480086 2998 True 5539.000000 5539 100.0000 1 2999 1 chr1D.!!$R1 2998
1 TraesCS1D01G230200 chr1A 399591938 399594382 2444 True 795.666667 1821 92.5440 1 2021 3 chr1A.!!$R1 2020
2 TraesCS1D01G230200 chr1B 430346859 430348292 1433 True 951.000000 1707 91.0405 228 2025 2 chr1B.!!$R2 1797
3 TraesCS1D01G230200 chr1B 430452567 430454066 1499 True 258.666667 353 89.2340 1 1020 3 chr1B.!!$R3 1019
4 TraesCS1D01G230200 chr7D 62282416 62283379 963 True 1653.000000 1653 97.6220 2035 2999 1 chr7D.!!$R1 964
5 TraesCS1D01G230200 chr2D 567636229 567641136 4907 False 840.000000 1321 97.9220 2035 2996 2 chr2D.!!$F3 961

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
870 1734 0.028110 GGAGAAAACGGATCGCATGC 59.972 55.0 7.91 7.91 0.0 4.06 F
893 1757 0.543749 CCAGCTCGGGAAAGGAAGAT 59.456 55.0 0.00 0.00 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 2730 0.036010 AATTGACGTCCCTGAGGCTG 60.036 55.0 14.12 0.0 0.0 4.85 R
2876 7747 0.384309 TCGTCGTCATCACCATAGCC 59.616 55.0 0.00 0.0 0.0 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.094062 GCGGCAGCATCCTCACCTA 62.094 63.158 3.18 0.00 44.35 3.08
31 32 1.067283 CGGCAGCATCCTCACCTATAG 60.067 57.143 0.00 0.00 0.00 1.31
37 38 4.285517 CAGCATCCTCACCTATAGAATGGT 59.714 45.833 0.00 0.00 36.96 3.55
61 62 3.726517 CCCTGTTGCGGTTGAGCG 61.727 66.667 0.00 0.00 40.67 5.03
62 63 2.972505 CCTGTTGCGGTTGAGCGT 60.973 61.111 4.45 0.00 40.67 5.07
67 68 2.307309 TTGCGGTTGAGCGTTCGAG 61.307 57.895 4.45 0.00 40.67 4.04
87 88 1.835531 GGACCCTTGACCGATTCCTTA 59.164 52.381 0.00 0.00 0.00 2.69
137 144 2.154567 ATGTCTGTAAGGACCGCCTA 57.845 50.000 0.00 0.00 46.28 3.93
253 1113 2.939261 TTCCCGCTGTCTCCGGTTC 61.939 63.158 0.00 0.00 44.13 3.62
302 1162 4.885426 ACTGTGACCTTGCAGTGG 57.115 55.556 6.31 6.31 43.45 4.00
316 1179 1.702886 CAGTGGTGCTACTCTGTTCG 58.297 55.000 0.00 0.00 0.00 3.95
331 1194 3.807622 TCTGTTCGGAAACACTCATTGTC 59.192 43.478 0.00 0.00 40.45 3.18
339 1202 0.884704 ACACTCATTGTCCGCACCAC 60.885 55.000 0.00 0.00 29.79 4.16
366 1229 6.716284 TCATGTTGGTAAATCAGGTCACATA 58.284 36.000 0.00 0.00 0.00 2.29
386 1249 2.772568 CTCGCATCAGAGTACTCAGG 57.227 55.000 24.44 15.69 33.75 3.86
387 1250 2.020720 CTCGCATCAGAGTACTCAGGT 58.979 52.381 24.44 10.60 33.75 4.00
388 1251 1.745653 TCGCATCAGAGTACTCAGGTG 59.254 52.381 24.44 22.58 31.36 4.00
389 1252 1.202348 CGCATCAGAGTACTCAGGTGG 60.202 57.143 24.84 14.02 29.24 4.61
390 1253 1.827969 GCATCAGAGTACTCAGGTGGT 59.172 52.381 24.84 10.06 29.24 4.16
391 1254 2.417924 GCATCAGAGTACTCAGGTGGTG 60.418 54.545 24.84 20.31 29.24 4.17
392 1255 2.677542 TCAGAGTACTCAGGTGGTGT 57.322 50.000 24.44 0.00 0.00 4.16
393 1256 2.958818 TCAGAGTACTCAGGTGGTGTT 58.041 47.619 24.44 0.00 0.00 3.32
394 1257 3.305720 TCAGAGTACTCAGGTGGTGTTT 58.694 45.455 24.44 0.00 0.00 2.83
395 1258 3.069586 TCAGAGTACTCAGGTGGTGTTTG 59.930 47.826 24.44 9.93 0.00 2.93
396 1259 2.368875 AGAGTACTCAGGTGGTGTTTGG 59.631 50.000 24.44 0.00 0.00 3.28
397 1260 2.104281 GAGTACTCAGGTGGTGTTTGGT 59.896 50.000 18.20 0.00 0.00 3.67
398 1261 2.508300 AGTACTCAGGTGGTGTTTGGTT 59.492 45.455 0.00 0.00 0.00 3.67
399 1262 2.052782 ACTCAGGTGGTGTTTGGTTC 57.947 50.000 0.00 0.00 0.00 3.62
400 1263 1.564348 ACTCAGGTGGTGTTTGGTTCT 59.436 47.619 0.00 0.00 0.00 3.01
401 1264 2.222027 CTCAGGTGGTGTTTGGTTCTC 58.778 52.381 0.00 0.00 0.00 2.87
402 1265 1.843851 TCAGGTGGTGTTTGGTTCTCT 59.156 47.619 0.00 0.00 0.00 3.10
403 1266 3.042682 TCAGGTGGTGTTTGGTTCTCTA 58.957 45.455 0.00 0.00 0.00 2.43
404 1267 3.071023 TCAGGTGGTGTTTGGTTCTCTAG 59.929 47.826 0.00 0.00 0.00 2.43
405 1268 2.152016 GGTGGTGTTTGGTTCTCTAGC 58.848 52.381 0.00 0.00 0.00 3.42
406 1269 2.152016 GTGGTGTTTGGTTCTCTAGCC 58.848 52.381 0.00 0.00 0.00 3.93
407 1270 1.073284 TGGTGTTTGGTTCTCTAGCCC 59.927 52.381 0.00 0.00 0.00 5.19
408 1271 1.351350 GGTGTTTGGTTCTCTAGCCCT 59.649 52.381 0.00 0.00 0.00 5.19
409 1272 2.570302 GGTGTTTGGTTCTCTAGCCCTA 59.430 50.000 0.00 0.00 0.00 3.53
410 1273 3.369576 GGTGTTTGGTTCTCTAGCCCTAG 60.370 52.174 0.00 0.00 34.56 3.02
411 1274 2.838202 TGTTTGGTTCTCTAGCCCTAGG 59.162 50.000 0.06 0.06 34.06 3.02
412 1275 3.105283 GTTTGGTTCTCTAGCCCTAGGA 58.895 50.000 11.48 0.00 34.06 2.94
413 1276 2.456073 TGGTTCTCTAGCCCTAGGAC 57.544 55.000 11.48 0.00 34.06 3.85
414 1277 1.930914 TGGTTCTCTAGCCCTAGGACT 59.069 52.381 11.48 6.59 34.06 3.85
415 1278 2.315155 TGGTTCTCTAGCCCTAGGACTT 59.685 50.000 11.48 0.00 34.06 3.01
416 1279 3.246021 TGGTTCTCTAGCCCTAGGACTTT 60.246 47.826 11.48 0.00 34.06 2.66
417 1280 3.775866 GGTTCTCTAGCCCTAGGACTTTT 59.224 47.826 11.48 0.00 34.06 2.27
418 1281 4.225492 GGTTCTCTAGCCCTAGGACTTTTT 59.775 45.833 11.48 0.00 34.06 1.94
419 1282 5.421277 GTTCTCTAGCCCTAGGACTTTTTC 58.579 45.833 11.48 0.00 34.06 2.29
420 1283 4.949121 TCTCTAGCCCTAGGACTTTTTCT 58.051 43.478 11.48 0.00 34.06 2.52
421 1284 6.088541 TCTCTAGCCCTAGGACTTTTTCTA 57.911 41.667 11.48 0.00 34.06 2.10
422 1285 6.130569 TCTCTAGCCCTAGGACTTTTTCTAG 58.869 44.000 11.48 8.70 34.06 2.43
423 1286 5.840081 TCTAGCCCTAGGACTTTTTCTAGT 58.160 41.667 11.48 0.00 33.10 2.57
424 1287 5.892686 TCTAGCCCTAGGACTTTTTCTAGTC 59.107 44.000 11.48 0.00 43.05 2.59
437 1300 8.818622 ACTTTTTCTAGTCCCAACTAAAAAGT 57.181 30.769 17.77 17.77 46.78 2.66
439 1302 7.812690 TTTTCTAGTCCCAACTAAAAAGTCC 57.187 36.000 0.00 0.00 37.53 3.85
440 1303 5.494390 TCTAGTCCCAACTAAAAAGTCCC 57.506 43.478 0.00 0.00 37.53 4.46
441 1304 5.160386 TCTAGTCCCAACTAAAAAGTCCCT 58.840 41.667 0.00 0.00 37.53 4.20
442 1305 6.325352 TCTAGTCCCAACTAAAAAGTCCCTA 58.675 40.000 0.00 0.00 37.53 3.53
443 1306 5.500546 AGTCCCAACTAAAAAGTCCCTAG 57.499 43.478 0.00 0.00 32.59 3.02
444 1307 4.912133 AGTCCCAACTAAAAAGTCCCTAGT 59.088 41.667 0.00 0.00 32.59 2.57
445 1308 5.012871 AGTCCCAACTAAAAAGTCCCTAGTC 59.987 44.000 0.00 0.00 32.59 2.59
446 1309 4.287845 TCCCAACTAAAAAGTCCCTAGTCC 59.712 45.833 0.00 0.00 0.00 3.85
447 1310 4.567116 CCCAACTAAAAAGTCCCTAGTCCC 60.567 50.000 0.00 0.00 0.00 4.46
448 1311 4.288887 CCAACTAAAAAGTCCCTAGTCCCT 59.711 45.833 0.00 0.00 0.00 4.20
449 1312 5.486419 CCAACTAAAAAGTCCCTAGTCCCTA 59.514 44.000 0.00 0.00 0.00 3.53
450 1313 6.013119 CCAACTAAAAAGTCCCTAGTCCCTAA 60.013 42.308 0.00 0.00 0.00 2.69
451 1314 7.455891 CAACTAAAAAGTCCCTAGTCCCTAAA 58.544 38.462 0.00 0.00 0.00 1.85
452 1315 7.637548 ACTAAAAAGTCCCTAGTCCCTAAAA 57.362 36.000 0.00 0.00 0.00 1.52
453 1316 8.049165 ACTAAAAAGTCCCTAGTCCCTAAAAA 57.951 34.615 0.00 0.00 0.00 1.94
454 1317 8.162085 ACTAAAAAGTCCCTAGTCCCTAAAAAG 58.838 37.037 0.00 0.00 0.00 2.27
455 1318 6.526056 AAAAGTCCCTAGTCCCTAAAAAGT 57.474 37.500 0.00 0.00 0.00 2.66
456 1319 6.526056 AAAGTCCCTAGTCCCTAAAAAGTT 57.474 37.500 0.00 0.00 0.00 2.66
457 1320 5.758790 AGTCCCTAGTCCCTAAAAAGTTC 57.241 43.478 0.00 0.00 0.00 3.01
458 1321 4.535294 AGTCCCTAGTCCCTAAAAAGTTCC 59.465 45.833 0.00 0.00 0.00 3.62
459 1322 4.535294 GTCCCTAGTCCCTAAAAAGTTCCT 59.465 45.833 0.00 0.00 0.00 3.36
460 1323 5.013913 GTCCCTAGTCCCTAAAAAGTTCCTT 59.986 44.000 0.00 0.00 0.00 3.36
461 1324 5.250082 TCCCTAGTCCCTAAAAAGTTCCTTC 59.750 44.000 0.00 0.00 0.00 3.46
462 1325 5.251005 CCCTAGTCCCTAAAAAGTTCCTTCT 59.749 44.000 0.00 0.00 0.00 2.85
463 1326 6.240205 CCCTAGTCCCTAAAAAGTTCCTTCTT 60.240 42.308 0.00 0.00 0.00 2.52
464 1327 6.655425 CCTAGTCCCTAAAAAGTTCCTTCTTG 59.345 42.308 0.00 0.00 0.00 3.02
465 1328 6.014771 AGTCCCTAAAAAGTTCCTTCTTGT 57.985 37.500 0.00 0.00 0.00 3.16
466 1329 6.432581 AGTCCCTAAAAAGTTCCTTCTTGTT 58.567 36.000 0.00 0.00 0.00 2.83
467 1330 6.895756 AGTCCCTAAAAAGTTCCTTCTTGTTT 59.104 34.615 0.00 0.00 0.00 2.83
468 1331 6.978659 GTCCCTAAAAAGTTCCTTCTTGTTTG 59.021 38.462 0.00 0.00 0.00 2.93
469 1332 6.666113 TCCCTAAAAAGTTCCTTCTTGTTTGT 59.334 34.615 0.00 0.00 0.00 2.83
470 1333 7.179516 TCCCTAAAAAGTTCCTTCTTGTTTGTT 59.820 33.333 0.00 0.00 0.00 2.83
471 1334 7.822334 CCCTAAAAAGTTCCTTCTTGTTTGTTT 59.178 33.333 0.00 0.00 0.00 2.83
472 1335 9.214957 CCTAAAAAGTTCCTTCTTGTTTGTTTT 57.785 29.630 0.00 0.00 0.00 2.43
474 1337 8.669946 AAAAAGTTCCTTCTTGTTTGTTTTCA 57.330 26.923 0.00 0.00 0.00 2.69
475 1338 7.889589 AAAGTTCCTTCTTGTTTGTTTTCAG 57.110 32.000 0.00 0.00 0.00 3.02
476 1339 6.834168 AGTTCCTTCTTGTTTGTTTTCAGA 57.166 33.333 0.00 0.00 0.00 3.27
477 1340 6.856895 AGTTCCTTCTTGTTTGTTTTCAGAG 58.143 36.000 0.00 0.00 0.00 3.35
478 1341 6.659242 AGTTCCTTCTTGTTTGTTTTCAGAGA 59.341 34.615 0.00 0.00 0.00 3.10
479 1342 6.436843 TCCTTCTTGTTTGTTTTCAGAGAC 57.563 37.500 0.00 0.00 0.00 3.36
480 1343 6.180472 TCCTTCTTGTTTGTTTTCAGAGACT 58.820 36.000 0.00 0.00 0.00 3.24
481 1344 7.335627 TCCTTCTTGTTTGTTTTCAGAGACTA 58.664 34.615 0.00 0.00 0.00 2.59
482 1345 7.827236 TCCTTCTTGTTTGTTTTCAGAGACTAA 59.173 33.333 0.00 0.00 0.00 2.24
483 1346 8.458843 CCTTCTTGTTTGTTTTCAGAGACTAAA 58.541 33.333 0.00 0.00 0.00 1.85
484 1347 9.840427 CTTCTTGTTTGTTTTCAGAGACTAAAA 57.160 29.630 0.00 0.00 0.00 1.52
486 1349 9.840427 TCTTGTTTGTTTTCAGAGACTAAAAAG 57.160 29.630 6.71 6.71 31.44 2.27
487 1350 9.626045 CTTGTTTGTTTTCAGAGACTAAAAAGT 57.374 29.630 5.61 0.00 0.00 2.66
488 1351 9.620660 TTGTTTGTTTTCAGAGACTAAAAAGTC 57.379 29.630 0.00 0.00 39.00 3.01
489 1352 8.241367 TGTTTGTTTTCAGAGACTAAAAAGTCC 58.759 33.333 2.00 0.00 39.50 3.85
490 1353 6.937436 TGTTTTCAGAGACTAAAAAGTCCC 57.063 37.500 2.00 0.00 39.50 4.46
491 1354 6.659824 TGTTTTCAGAGACTAAAAAGTCCCT 58.340 36.000 2.00 0.00 39.50 4.20
492 1355 7.798071 TGTTTTCAGAGACTAAAAAGTCCCTA 58.202 34.615 2.00 0.00 39.50 3.53
493 1356 7.931948 TGTTTTCAGAGACTAAAAAGTCCCTAG 59.068 37.037 2.00 0.00 39.50 3.02
494 1357 7.613551 TTTCAGAGACTAAAAAGTCCCTAGT 57.386 36.000 2.00 0.00 39.50 2.57
495 1358 6.837471 TCAGAGACTAAAAAGTCCCTAGTC 57.163 41.667 2.00 0.00 41.17 2.59
496 1359 5.715753 TCAGAGACTAAAAAGTCCCTAGTCC 59.284 44.000 2.00 0.00 41.59 3.85
497 1360 5.024785 AGAGACTAAAAAGTCCCTAGTCCC 58.975 45.833 2.00 0.00 41.59 4.46
498 1361 5.024785 GAGACTAAAAAGTCCCTAGTCCCT 58.975 45.833 2.00 0.00 41.59 4.20
499 1362 5.413277 AGACTAAAAAGTCCCTAGTCCCTT 58.587 41.667 2.00 0.00 41.59 3.95
500 1363 5.484644 AGACTAAAAAGTCCCTAGTCCCTTC 59.515 44.000 2.00 0.00 41.59 3.46
501 1364 3.697619 AAAAAGTCCCTAGTCCCTTCG 57.302 47.619 0.00 0.00 0.00 3.79
502 1365 2.322339 AAAGTCCCTAGTCCCTTCGT 57.678 50.000 0.00 0.00 0.00 3.85
503 1366 3.463048 AAAGTCCCTAGTCCCTTCGTA 57.537 47.619 0.00 0.00 0.00 3.43
504 1367 2.732844 AGTCCCTAGTCCCTTCGTAG 57.267 55.000 0.00 0.00 0.00 3.51
505 1368 2.203584 AGTCCCTAGTCCCTTCGTAGA 58.796 52.381 0.00 0.00 0.00 2.59
506 1369 2.173143 AGTCCCTAGTCCCTTCGTAGAG 59.827 54.545 0.00 0.00 38.43 2.43
507 1370 2.172293 GTCCCTAGTCCCTTCGTAGAGA 59.828 54.545 0.00 0.00 38.43 3.10
508 1371 3.054576 TCCCTAGTCCCTTCGTAGAGAT 58.945 50.000 0.00 0.00 38.43 2.75
509 1372 3.462579 TCCCTAGTCCCTTCGTAGAGATT 59.537 47.826 0.00 0.00 38.43 2.40
510 1373 4.662179 TCCCTAGTCCCTTCGTAGAGATTA 59.338 45.833 0.00 0.00 38.43 1.75
511 1374 5.312708 TCCCTAGTCCCTTCGTAGAGATTAT 59.687 44.000 0.00 0.00 38.43 1.28
512 1375 6.011481 CCCTAGTCCCTTCGTAGAGATTATT 58.989 44.000 0.00 0.00 38.43 1.40
513 1376 7.017950 TCCCTAGTCCCTTCGTAGAGATTATTA 59.982 40.741 0.00 0.00 38.43 0.98
514 1377 7.668886 CCCTAGTCCCTTCGTAGAGATTATTAA 59.331 40.741 0.00 0.00 38.43 1.40
515 1378 9.075678 CCTAGTCCCTTCGTAGAGATTATTAAA 57.924 37.037 0.00 0.00 38.43 1.52
518 1381 9.144298 AGTCCCTTCGTAGAGATTATTAAATGA 57.856 33.333 0.00 0.00 38.43 2.57
519 1382 9.194271 GTCCCTTCGTAGAGATTATTAAATGAC 57.806 37.037 0.00 0.00 38.43 3.06
520 1383 8.365647 TCCCTTCGTAGAGATTATTAAATGACC 58.634 37.037 0.00 0.00 38.43 4.02
521 1384 8.148351 CCCTTCGTAGAGATTATTAAATGACCA 58.852 37.037 0.00 0.00 38.43 4.02
522 1385 9.712305 CCTTCGTAGAGATTATTAAATGACCAT 57.288 33.333 0.00 0.00 38.43 3.55
527 1390 9.884465 GTAGAGATTATTAAATGACCATGTTGC 57.116 33.333 0.00 0.00 0.00 4.17
528 1391 7.945134 AGAGATTATTAAATGACCATGTTGCC 58.055 34.615 0.00 0.00 0.00 4.52
529 1392 7.014615 AGAGATTATTAAATGACCATGTTGCCC 59.985 37.037 0.00 0.00 0.00 5.36
530 1393 6.610830 AGATTATTAAATGACCATGTTGCCCA 59.389 34.615 0.00 0.00 0.00 5.36
531 1394 6.805016 TTATTAAATGACCATGTTGCCCAT 57.195 33.333 0.00 0.00 0.00 4.00
532 1395 7.904558 TTATTAAATGACCATGTTGCCCATA 57.095 32.000 0.00 0.00 30.71 2.74
533 1396 5.850557 TTAAATGACCATGTTGCCCATAG 57.149 39.130 0.00 0.00 30.71 2.23
534 1397 3.386932 AATGACCATGTTGCCCATAGT 57.613 42.857 0.00 0.00 30.71 2.12
535 1398 4.518278 AATGACCATGTTGCCCATAGTA 57.482 40.909 0.00 0.00 30.71 1.82
536 1399 4.729552 ATGACCATGTTGCCCATAGTAT 57.270 40.909 0.00 0.00 30.71 2.12
537 1400 5.841267 ATGACCATGTTGCCCATAGTATA 57.159 39.130 0.00 0.00 30.71 1.47
538 1401 5.841267 TGACCATGTTGCCCATAGTATAT 57.159 39.130 0.00 0.00 30.71 0.86
539 1402 6.943899 TGACCATGTTGCCCATAGTATATA 57.056 37.500 0.00 0.00 30.71 0.86
540 1403 6.946340 TGACCATGTTGCCCATAGTATATAG 58.054 40.000 0.00 0.00 30.71 1.31
541 1404 6.728632 TGACCATGTTGCCCATAGTATATAGA 59.271 38.462 0.00 0.00 30.71 1.98
542 1405 7.236640 TGACCATGTTGCCCATAGTATATAGAA 59.763 37.037 0.00 0.00 30.71 2.10
543 1406 7.984475 ACCATGTTGCCCATAGTATATAGAAA 58.016 34.615 0.00 0.00 30.71 2.52
544 1407 8.444783 ACCATGTTGCCCATAGTATATAGAAAA 58.555 33.333 0.00 0.00 30.71 2.29
545 1408 9.295825 CCATGTTGCCCATAGTATATAGAAAAA 57.704 33.333 0.00 0.00 30.71 1.94
567 1430 9.447157 AAAAATATAATCAAACAACACCATGGG 57.553 29.630 18.09 7.72 0.00 4.00
568 1431 6.729690 ATATAATCAAACAACACCATGGGG 57.270 37.500 14.08 14.08 41.29 4.96
589 1452 3.840594 CGGGCCAATGGGTGCATG 61.841 66.667 4.39 0.00 36.17 4.06
590 1453 2.364056 GGGCCAATGGGTGCATGA 60.364 61.111 4.39 0.00 36.17 3.07
591 1454 1.988956 GGGCCAATGGGTGCATGAA 60.989 57.895 4.39 0.00 36.17 2.57
592 1455 1.518774 GGCCAATGGGTGCATGAAG 59.481 57.895 0.00 0.00 36.17 3.02
593 1456 1.518774 GCCAATGGGTGCATGAAGG 59.481 57.895 0.00 0.00 36.17 3.46
594 1457 1.963464 GCCAATGGGTGCATGAAGGG 61.963 60.000 0.00 0.00 36.17 3.95
595 1458 0.324552 CCAATGGGTGCATGAAGGGA 60.325 55.000 0.00 0.00 0.00 4.20
596 1459 0.819582 CAATGGGTGCATGAAGGGAC 59.180 55.000 0.00 0.00 0.00 4.46
597 1460 0.409092 AATGGGTGCATGAAGGGACA 59.591 50.000 0.00 0.00 0.00 4.02
598 1461 0.632835 ATGGGTGCATGAAGGGACAT 59.367 50.000 0.00 0.00 0.00 3.06
599 1462 0.409092 TGGGTGCATGAAGGGACATT 59.591 50.000 0.00 0.00 0.00 2.71
600 1463 0.819582 GGGTGCATGAAGGGACATTG 59.180 55.000 0.00 0.00 0.00 2.82
601 1464 1.549203 GGTGCATGAAGGGACATTGT 58.451 50.000 0.00 0.00 0.00 2.71
602 1465 1.895131 GGTGCATGAAGGGACATTGTT 59.105 47.619 0.00 0.00 0.00 2.83
603 1466 2.353011 GGTGCATGAAGGGACATTGTTG 60.353 50.000 0.00 0.00 0.00 3.33
604 1467 1.894466 TGCATGAAGGGACATTGTTGG 59.106 47.619 0.00 0.00 0.00 3.77
605 1468 2.170166 GCATGAAGGGACATTGTTGGA 58.830 47.619 0.00 0.00 0.00 3.53
606 1469 2.562298 GCATGAAGGGACATTGTTGGAA 59.438 45.455 0.00 0.00 0.00 3.53
607 1470 3.006752 GCATGAAGGGACATTGTTGGAAA 59.993 43.478 0.00 0.00 0.00 3.13
608 1471 4.502950 GCATGAAGGGACATTGTTGGAAAA 60.503 41.667 0.00 0.00 0.00 2.29
609 1472 4.935352 TGAAGGGACATTGTTGGAAAAG 57.065 40.909 0.00 0.00 0.00 2.27
610 1473 4.285863 TGAAGGGACATTGTTGGAAAAGT 58.714 39.130 0.00 0.00 0.00 2.66
611 1474 4.340950 TGAAGGGACATTGTTGGAAAAGTC 59.659 41.667 0.00 0.00 0.00 3.01
612 1475 3.230976 AGGGACATTGTTGGAAAAGTCC 58.769 45.455 0.00 0.00 45.21 3.85
613 1476 3.660501 GGACATTGTTGGAAAAGTCCC 57.339 47.619 0.00 0.00 44.23 4.46
614 1477 2.962421 GGACATTGTTGGAAAAGTCCCA 59.038 45.455 0.00 0.00 44.23 4.37
615 1478 3.386402 GGACATTGTTGGAAAAGTCCCAA 59.614 43.478 0.00 0.00 44.23 4.12
616 1479 4.141824 GGACATTGTTGGAAAAGTCCCAAA 60.142 41.667 0.00 0.00 44.41 3.28
617 1480 5.423886 GACATTGTTGGAAAAGTCCCAAAA 58.576 37.500 0.00 0.00 44.41 2.44
618 1481 5.810095 ACATTGTTGGAAAAGTCCCAAAAA 58.190 33.333 0.00 0.00 44.41 1.94
619 1482 5.879777 ACATTGTTGGAAAAGTCCCAAAAAG 59.120 36.000 0.00 0.00 42.35 2.27
620 1483 5.746990 TTGTTGGAAAAGTCCCAAAAAGA 57.253 34.783 0.00 0.00 44.41 2.52
621 1484 5.079689 TGTTGGAAAAGTCCCAAAAAGAC 57.920 39.130 0.00 0.00 44.41 3.01
622 1485 4.775253 TGTTGGAAAAGTCCCAAAAAGACT 59.225 37.500 0.00 0.00 46.50 3.24
623 1486 5.105513 TGTTGGAAAAGTCCCAAAAAGACTC 60.106 40.000 0.00 0.00 43.77 3.36
624 1487 4.867086 TGGAAAAGTCCCAAAAAGACTCT 58.133 39.130 0.00 0.00 43.77 3.24
625 1488 4.887655 TGGAAAAGTCCCAAAAAGACTCTC 59.112 41.667 0.00 0.00 43.77 3.20
626 1489 4.278669 GGAAAAGTCCCAAAAAGACTCTCC 59.721 45.833 0.00 0.00 43.77 3.71
627 1490 4.797912 AAAGTCCCAAAAAGACTCTCCT 57.202 40.909 0.00 0.00 43.77 3.69
628 1491 4.797912 AAGTCCCAAAAAGACTCTCCTT 57.202 40.909 0.00 0.00 43.77 3.36
629 1492 4.092116 AGTCCCAAAAAGACTCTCCTTG 57.908 45.455 0.00 0.00 40.61 3.61
630 1493 3.716872 AGTCCCAAAAAGACTCTCCTTGA 59.283 43.478 0.00 0.00 40.61 3.02
631 1494 4.202409 AGTCCCAAAAAGACTCTCCTTGAG 60.202 45.833 0.00 0.00 40.61 3.02
632 1495 3.973973 TCCCAAAAAGACTCTCCTTGAGA 59.026 43.478 0.00 0.00 45.39 3.27
645 1508 6.678568 TCTCCTTGAGAGTCTTCTTCATTT 57.321 37.500 0.00 0.00 43.71 2.32
646 1509 7.782897 TCTCCTTGAGAGTCTTCTTCATTTA 57.217 36.000 0.00 0.00 43.71 1.40
647 1510 7.835822 TCTCCTTGAGAGTCTTCTTCATTTAG 58.164 38.462 0.00 0.00 43.71 1.85
648 1511 7.453126 TCTCCTTGAGAGTCTTCTTCATTTAGT 59.547 37.037 0.00 0.00 43.71 2.24
649 1512 7.607250 TCCTTGAGAGTCTTCTTCATTTAGTC 58.393 38.462 0.00 0.00 32.53 2.59
650 1513 7.453126 TCCTTGAGAGTCTTCTTCATTTAGTCT 59.547 37.037 0.00 0.00 32.53 3.24
651 1514 7.759433 CCTTGAGAGTCTTCTTCATTTAGTCTC 59.241 40.741 0.00 0.00 37.23 3.36
652 1515 7.767250 TGAGAGTCTTCTTCATTTAGTCTCA 57.233 36.000 0.00 0.00 41.83 3.27
653 1516 8.183104 TGAGAGTCTTCTTCATTTAGTCTCAA 57.817 34.615 0.00 0.00 41.38 3.02
654 1517 8.642432 TGAGAGTCTTCTTCATTTAGTCTCAAA 58.358 33.333 0.00 0.00 41.38 2.69
655 1518 9.651913 GAGAGTCTTCTTCATTTAGTCTCAAAT 57.348 33.333 0.00 0.00 36.87 2.32
656 1519 9.434420 AGAGTCTTCTTCATTTAGTCTCAAATG 57.566 33.333 2.83 2.83 44.00 2.32
657 1520 8.038492 AGTCTTCTTCATTTAGTCTCAAATGC 57.962 34.615 4.14 0.00 42.89 3.56
658 1521 7.120432 AGTCTTCTTCATTTAGTCTCAAATGCC 59.880 37.037 4.14 0.00 42.89 4.40
659 1522 7.120432 GTCTTCTTCATTTAGTCTCAAATGCCT 59.880 37.037 4.14 0.00 42.89 4.75
660 1523 8.321353 TCTTCTTCATTTAGTCTCAAATGCCTA 58.679 33.333 4.14 0.00 42.89 3.93
661 1524 8.498054 TTCTTCATTTAGTCTCAAATGCCTAG 57.502 34.615 4.14 0.00 42.89 3.02
662 1525 7.624549 TCTTCATTTAGTCTCAAATGCCTAGT 58.375 34.615 4.14 0.00 42.89 2.57
663 1526 8.103305 TCTTCATTTAGTCTCAAATGCCTAGTT 58.897 33.333 4.14 0.00 42.89 2.24
664 1527 8.635765 TTCATTTAGTCTCAAATGCCTAGTTT 57.364 30.769 4.14 0.00 42.89 2.66
665 1528 9.733556 TTCATTTAGTCTCAAATGCCTAGTTTA 57.266 29.630 4.14 0.00 42.89 2.01
666 1529 9.383519 TCATTTAGTCTCAAATGCCTAGTTTAG 57.616 33.333 4.14 0.00 42.89 1.85
667 1530 9.167311 CATTTAGTCTCAAATGCCTAGTTTAGT 57.833 33.333 0.00 0.00 38.63 2.24
668 1531 8.773404 TTTAGTCTCAAATGCCTAGTTTAGTC 57.227 34.615 0.00 0.00 0.00 2.59
669 1532 5.735766 AGTCTCAAATGCCTAGTTTAGTCC 58.264 41.667 0.00 0.00 0.00 3.85
670 1533 5.485708 AGTCTCAAATGCCTAGTTTAGTCCT 59.514 40.000 0.00 0.00 0.00 3.85
671 1534 6.013293 AGTCTCAAATGCCTAGTTTAGTCCTT 60.013 38.462 0.00 0.00 0.00 3.36
672 1535 7.180408 AGTCTCAAATGCCTAGTTTAGTCCTTA 59.820 37.037 0.00 0.00 0.00 2.69
673 1536 7.822822 GTCTCAAATGCCTAGTTTAGTCCTTAA 59.177 37.037 0.00 0.00 0.00 1.85
674 1537 8.380099 TCTCAAATGCCTAGTTTAGTCCTTAAA 58.620 33.333 0.00 0.00 0.00 1.52
675 1538 8.927675 TCAAATGCCTAGTTTAGTCCTTAAAA 57.072 30.769 0.00 0.00 33.22 1.52
676 1539 9.357161 TCAAATGCCTAGTTTAGTCCTTAAAAA 57.643 29.630 0.00 0.00 33.22 1.94
677 1540 9.626045 CAAATGCCTAGTTTAGTCCTTAAAAAG 57.374 33.333 0.00 0.00 33.22 2.27
678 1541 8.935614 AATGCCTAGTTTAGTCCTTAAAAAGT 57.064 30.769 0.00 0.00 33.22 2.66
679 1542 7.974482 TGCCTAGTTTAGTCCTTAAAAAGTC 57.026 36.000 0.00 0.00 33.22 3.01
680 1543 6.938596 TGCCTAGTTTAGTCCTTAAAAAGTCC 59.061 38.462 0.00 0.00 33.22 3.85
681 1544 6.373774 GCCTAGTTTAGTCCTTAAAAAGTCCC 59.626 42.308 0.00 0.00 33.22 4.46
682 1545 7.687388 CCTAGTTTAGTCCTTAAAAAGTCCCT 58.313 38.462 0.00 0.00 33.22 4.20
683 1546 8.162085 CCTAGTTTAGTCCTTAAAAAGTCCCTT 58.838 37.037 0.00 0.00 33.22 3.95
684 1547 9.217278 CTAGTTTAGTCCTTAAAAAGTCCCTTC 57.783 37.037 0.00 0.00 33.22 3.46
685 1548 7.813331 AGTTTAGTCCTTAAAAAGTCCCTTCT 58.187 34.615 0.00 0.00 33.22 2.85
686 1549 7.720074 AGTTTAGTCCTTAAAAAGTCCCTTCTG 59.280 37.037 0.00 0.00 33.22 3.02
687 1550 5.648330 AGTCCTTAAAAAGTCCCTTCTGT 57.352 39.130 0.00 0.00 0.00 3.41
688 1551 6.014771 AGTCCTTAAAAAGTCCCTTCTGTT 57.985 37.500 0.00 0.00 0.00 3.16
689 1552 6.432581 AGTCCTTAAAAAGTCCCTTCTGTTT 58.567 36.000 0.00 0.00 0.00 2.83
690 1553 6.321435 AGTCCTTAAAAAGTCCCTTCTGTTTG 59.679 38.462 0.00 0.00 0.00 2.93
691 1554 5.596772 TCCTTAAAAAGTCCCTTCTGTTTGG 59.403 40.000 0.00 0.00 0.00 3.28
692 1555 5.362717 CCTTAAAAAGTCCCTTCTGTTTGGT 59.637 40.000 0.00 0.00 0.00 3.67
693 1556 6.548251 CCTTAAAAAGTCCCTTCTGTTTGGTA 59.452 38.462 0.00 0.00 0.00 3.25
694 1557 7.068962 CCTTAAAAAGTCCCTTCTGTTTGGTAA 59.931 37.037 0.00 0.00 0.00 2.85
695 1558 6.860790 AAAAAGTCCCTTCTGTTTGGTAAA 57.139 33.333 0.00 0.00 0.00 2.01
696 1559 6.860790 AAAAGTCCCTTCTGTTTGGTAAAA 57.139 33.333 0.00 0.00 0.00 1.52
697 1560 6.860790 AAAGTCCCTTCTGTTTGGTAAAAA 57.139 33.333 0.00 0.00 0.00 1.94
728 1591 9.634163 CTAAGAGAGACTTTCTTTTTCTAGTCC 57.366 37.037 13.03 0.00 38.17 3.85
729 1592 7.604657 AGAGAGACTTTCTTTTTCTAGTCCA 57.395 36.000 0.00 0.00 38.17 4.02
730 1593 8.201242 AGAGAGACTTTCTTTTTCTAGTCCAT 57.799 34.615 0.00 0.00 38.17 3.41
731 1594 9.315363 AGAGAGACTTTCTTTTTCTAGTCCATA 57.685 33.333 0.00 0.00 38.17 2.74
758 1621 4.415881 AAATCCCTGGAAACAAAACACC 57.584 40.909 0.00 0.00 42.06 4.16
759 1622 1.783071 TCCCTGGAAACAAAACACCC 58.217 50.000 0.00 0.00 42.06 4.61
776 1639 1.370437 CCCTCAGCCTCCATCATCG 59.630 63.158 0.00 0.00 0.00 3.84
869 1733 0.657840 GGGAGAAAACGGATCGCATG 59.342 55.000 0.00 0.00 0.00 4.06
870 1734 0.028110 GGAGAAAACGGATCGCATGC 59.972 55.000 7.91 7.91 0.00 4.06
871 1735 0.028110 GAGAAAACGGATCGCATGCC 59.972 55.000 13.15 0.00 0.00 4.40
872 1736 0.676466 AGAAAACGGATCGCATGCCA 60.676 50.000 13.15 0.00 0.00 4.92
893 1757 0.543749 CCAGCTCGGGAAAGGAAGAT 59.456 55.000 0.00 0.00 0.00 2.40
916 1780 4.097286 TGACGAAAAGGAAGAAAAAGTGGG 59.903 41.667 0.00 0.00 0.00 4.61
1070 1976 9.569167 CGATTGAACTCACTCAGTTTATTACTA 57.431 33.333 0.00 0.00 46.10 1.82
1146 2056 3.997021 CGAGCTTCTCCATTTTGTACACT 59.003 43.478 0.00 0.00 0.00 3.55
1152 2062 2.676342 CTCCATTTTGTACACTACCCGC 59.324 50.000 0.00 0.00 0.00 6.13
1370 2280 2.806608 TTAGTCAGTCCCACGTCAAC 57.193 50.000 0.00 0.00 0.00 3.18
1383 2293 2.544267 CACGTCAACTTCTCAGTTTCCC 59.456 50.000 0.00 0.00 40.66 3.97
1446 2363 3.426568 GAAGCGTCACCAGCAGCC 61.427 66.667 0.00 0.00 37.01 4.85
1447 2364 4.254709 AAGCGTCACCAGCAGCCA 62.255 61.111 0.00 0.00 37.01 4.75
1616 2536 3.636231 CGTCCAAGTCCAGCCCCA 61.636 66.667 0.00 0.00 0.00 4.96
1810 2730 0.248377 CGGTCCGAGTTCCGTATGTC 60.248 60.000 4.91 0.00 41.58 3.06
1829 2749 0.036010 CAGCCTCAGGGACGTCAATT 60.036 55.000 18.91 0.00 33.58 2.32
1837 2757 1.500396 GGACGTCAATTTCCGTGGC 59.500 57.895 18.91 0.00 37.44 5.01
1924 2844 1.657751 CCTGTCGATCGACTGCTGGA 61.658 60.000 39.10 22.60 44.80 3.86
1925 2845 0.248417 CTGTCGATCGACTGCTGGAG 60.248 60.000 39.10 26.76 44.80 3.86
1926 2846 0.960861 TGTCGATCGACTGCTGGAGT 60.961 55.000 39.10 0.00 44.80 3.85
1927 2847 0.524392 GTCGATCGACTGCTGGAGTG 60.524 60.000 34.97 0.00 41.57 3.51
1928 2848 1.875813 CGATCGACTGCTGGAGTGC 60.876 63.158 10.26 0.00 33.83 4.40
1929 2849 1.515020 GATCGACTGCTGGAGTGCT 59.485 57.895 6.54 0.00 33.83 4.40
1930 2850 0.805322 GATCGACTGCTGGAGTGCTG 60.805 60.000 6.54 0.00 33.83 4.41
1931 2851 2.236223 ATCGACTGCTGGAGTGCTGG 62.236 60.000 6.54 0.00 33.83 4.85
1945 2865 0.394192 TGCTGGTGACTGTTCCTCTG 59.606 55.000 5.00 0.00 0.00 3.35
1996 2917 8.441312 AGAGGTGTATTTCTTGTTCGTTTTTA 57.559 30.769 0.00 0.00 0.00 1.52
2021 2942 1.270305 ACTTGGACCACATGTCAGTCG 60.270 52.381 15.83 7.88 46.38 4.18
2025 2946 2.427095 TGGACCACATGTCAGTCGATAG 59.573 50.000 15.83 0.00 46.38 2.08
2026 2947 2.427453 GGACCACATGTCAGTCGATAGT 59.573 50.000 15.83 0.00 46.38 2.12
2027 2948 3.439293 GACCACATGTCAGTCGATAGTG 58.561 50.000 9.23 0.00 43.85 2.74
2028 2949 2.826128 ACCACATGTCAGTCGATAGTGT 59.174 45.455 0.00 0.00 37.40 3.55
2029 2950 4.014406 ACCACATGTCAGTCGATAGTGTA 58.986 43.478 0.00 0.00 37.40 2.90
2030 2951 4.645136 ACCACATGTCAGTCGATAGTGTAT 59.355 41.667 0.00 0.00 37.40 2.29
2031 2952 5.127194 ACCACATGTCAGTCGATAGTGTATT 59.873 40.000 0.00 0.00 37.40 1.89
2032 2953 6.042777 CCACATGTCAGTCGATAGTGTATTT 58.957 40.000 0.00 0.00 37.40 1.40
2033 2954 6.199154 CCACATGTCAGTCGATAGTGTATTTC 59.801 42.308 0.00 0.00 37.40 2.17
2173 3094 1.067846 TGGTCCACTCATTCTCGTTCG 60.068 52.381 0.00 0.00 0.00 3.95
2260 7129 2.568090 CCCGCCTTGCATCACAAC 59.432 61.111 0.00 0.00 33.68 3.32
2575 7444 2.463047 AGTGGGGGTTGTTTTTGCTA 57.537 45.000 0.00 0.00 0.00 3.49
2602 7471 3.002553 CAGCTTCAATTTTTGTTGCCACC 59.997 43.478 0.00 0.00 33.20 4.61
2742 7613 5.404466 TTTGCTACCATCCCATCTTTTTG 57.596 39.130 0.00 0.00 0.00 2.44
2743 7614 4.314522 TGCTACCATCCCATCTTTTTGA 57.685 40.909 0.00 0.00 0.00 2.69
2771 7642 2.507944 GATCCATCTGCCGGCAGT 59.492 61.111 45.86 33.32 43.96 4.40
2875 7746 0.670239 CGGCCAATTTTGCTGGAACC 60.670 55.000 2.24 0.00 35.85 3.62
2876 7747 0.670239 GGCCAATTTTGCTGGAACCG 60.670 55.000 0.00 0.00 35.85 4.44
2877 7748 0.670239 GCCAATTTTGCTGGAACCGG 60.670 55.000 0.00 0.00 35.85 5.28
2961 7832 1.858399 GCTGTTTTGTTGGAACCGACG 60.858 52.381 6.72 0.00 33.16 5.12
2963 7834 2.289547 CTGTTTTGTTGGAACCGACGAT 59.710 45.455 0.00 0.00 33.16 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.227556 GGGCGTGCGACCATTCTAT 60.228 57.895 12.13 0.00 44.50 1.98
61 62 1.080025 CGGTCAAGGGTCCTCGAAC 60.080 63.158 0.00 0.00 0.00 3.95
62 63 0.613853 ATCGGTCAAGGGTCCTCGAA 60.614 55.000 3.29 0.00 0.00 3.71
67 68 0.618981 AAGGAATCGGTCAAGGGTCC 59.381 55.000 0.00 0.00 0.00 4.46
87 88 4.082354 GCAGAGGAGCATGTTCTCAATTTT 60.082 41.667 9.57 0.00 34.84 1.82
137 144 4.895297 ACTTTTTGGTGGATGTCTTGATGT 59.105 37.500 0.00 0.00 0.00 3.06
170 1030 0.469917 GATTGATCTCGGGGAAGCCA 59.530 55.000 0.00 0.00 0.00 4.75
253 1113 2.356382 GAGTGAGATCAGTGTCCGGTAG 59.644 54.545 0.00 0.00 0.00 3.18
301 1161 2.067013 GTTTCCGAACAGAGTAGCACC 58.933 52.381 0.00 0.00 35.79 5.01
302 1162 2.475487 GTGTTTCCGAACAGAGTAGCAC 59.525 50.000 0.00 0.00 45.86 4.40
316 1179 1.069227 GTGCGGACAATGAGTGTTTCC 60.069 52.381 0.63 0.00 41.96 3.13
331 1194 1.425031 CAACATGATCGTGGTGCGG 59.575 57.895 19.63 0.00 41.72 5.69
339 1202 4.875536 TGACCTGATTTACCAACATGATCG 59.124 41.667 0.00 0.00 0.00 3.69
366 1229 2.020720 CCTGAGTACTCTGATGCGAGT 58.979 52.381 26.29 0.00 45.62 4.18
381 1244 2.158755 AGAGAACCAAACACCACCTGAG 60.159 50.000 0.00 0.00 0.00 3.35
382 1245 1.843851 AGAGAACCAAACACCACCTGA 59.156 47.619 0.00 0.00 0.00 3.86
383 1246 2.348411 AGAGAACCAAACACCACCTG 57.652 50.000 0.00 0.00 0.00 4.00
384 1247 2.224548 GCTAGAGAACCAAACACCACCT 60.225 50.000 0.00 0.00 0.00 4.00
385 1248 2.152016 GCTAGAGAACCAAACACCACC 58.848 52.381 0.00 0.00 0.00 4.61
386 1249 2.152016 GGCTAGAGAACCAAACACCAC 58.848 52.381 0.00 0.00 0.00 4.16
387 1250 1.073284 GGGCTAGAGAACCAAACACCA 59.927 52.381 0.00 0.00 0.00 4.17
388 1251 1.351350 AGGGCTAGAGAACCAAACACC 59.649 52.381 0.00 0.00 0.00 4.16
389 1252 2.861147 AGGGCTAGAGAACCAAACAC 57.139 50.000 0.00 0.00 0.00 3.32
390 1253 2.838202 CCTAGGGCTAGAGAACCAAACA 59.162 50.000 0.00 0.00 35.21 2.83
391 1254 3.105283 TCCTAGGGCTAGAGAACCAAAC 58.895 50.000 9.46 0.00 35.21 2.93
392 1255 3.105283 GTCCTAGGGCTAGAGAACCAAA 58.895 50.000 5.99 0.00 35.21 3.28
393 1256 2.315155 AGTCCTAGGGCTAGAGAACCAA 59.685 50.000 16.20 0.00 35.21 3.67
394 1257 1.930914 AGTCCTAGGGCTAGAGAACCA 59.069 52.381 16.20 0.00 35.21 3.67
395 1258 2.759839 AGTCCTAGGGCTAGAGAACC 57.240 55.000 16.20 0.00 35.21 3.62
396 1259 5.188163 AGAAAAAGTCCTAGGGCTAGAGAAC 59.812 44.000 18.33 6.71 35.21 3.01
397 1260 5.342866 AGAAAAAGTCCTAGGGCTAGAGAA 58.657 41.667 18.33 0.00 35.21 2.87
398 1261 4.949121 AGAAAAAGTCCTAGGGCTAGAGA 58.051 43.478 18.33 0.00 35.21 3.10
399 1262 5.894964 ACTAGAAAAAGTCCTAGGGCTAGAG 59.105 44.000 18.33 10.01 37.32 2.43
400 1263 5.840081 ACTAGAAAAAGTCCTAGGGCTAGA 58.160 41.667 18.33 0.00 37.32 2.43
401 1264 6.151663 GACTAGAAAAAGTCCTAGGGCTAG 57.848 45.833 18.33 11.75 40.06 3.42
412 1275 8.818622 ACTTTTTAGTTGGGACTAGAAAAAGT 57.181 30.769 18.18 18.18 46.80 2.66
413 1276 8.350722 GGACTTTTTAGTTGGGACTAGAAAAAG 58.649 37.037 17.36 17.36 45.76 2.27
414 1277 7.286087 GGGACTTTTTAGTTGGGACTAGAAAAA 59.714 37.037 0.00 0.00 40.10 1.94
415 1278 6.774170 GGGACTTTTTAGTTGGGACTAGAAAA 59.226 38.462 0.00 5.68 40.10 2.29
416 1279 6.102174 AGGGACTTTTTAGTTGGGACTAGAAA 59.898 38.462 0.00 3.34 39.04 2.52
417 1280 5.609708 AGGGACTTTTTAGTTGGGACTAGAA 59.390 40.000 0.00 0.00 35.67 2.10
418 1281 5.160386 AGGGACTTTTTAGTTGGGACTAGA 58.840 41.667 0.00 0.00 35.67 2.43
419 1282 5.500546 AGGGACTTTTTAGTTGGGACTAG 57.499 43.478 0.00 0.00 35.67 2.57
420 1283 6.086775 ACTAGGGACTTTTTAGTTGGGACTA 58.913 40.000 0.00 0.00 41.75 2.59
421 1284 4.912133 ACTAGGGACTTTTTAGTTGGGACT 59.088 41.667 0.00 0.00 41.75 3.85
422 1285 5.238624 ACTAGGGACTTTTTAGTTGGGAC 57.761 43.478 0.00 0.00 41.75 4.46
423 1286 4.287845 GGACTAGGGACTTTTTAGTTGGGA 59.712 45.833 0.00 0.00 41.75 4.37
424 1287 4.567116 GGGACTAGGGACTTTTTAGTTGGG 60.567 50.000 0.00 0.00 41.75 4.12
425 1288 4.288887 AGGGACTAGGGACTTTTTAGTTGG 59.711 45.833 0.00 0.00 41.75 3.77
426 1289 5.500546 AGGGACTAGGGACTTTTTAGTTG 57.499 43.478 0.00 0.00 41.75 3.16
427 1290 7.637548 TTTAGGGACTAGGGACTTTTTAGTT 57.362 36.000 0.00 0.00 44.25 2.24
428 1291 7.637548 TTTTAGGGACTAGGGACTTTTTAGT 57.362 36.000 0.00 0.00 44.25 2.24
429 1292 8.162085 ACTTTTTAGGGACTAGGGACTTTTTAG 58.838 37.037 0.00 0.00 44.25 1.85
430 1293 8.049165 ACTTTTTAGGGACTAGGGACTTTTTA 57.951 34.615 0.00 0.00 44.25 1.52
431 1294 6.919158 ACTTTTTAGGGACTAGGGACTTTTT 58.081 36.000 0.00 0.00 44.25 1.94
432 1295 6.526056 ACTTTTTAGGGACTAGGGACTTTT 57.474 37.500 0.00 0.00 44.25 2.27
433 1296 6.466904 GGAACTTTTTAGGGACTAGGGACTTT 60.467 42.308 0.00 0.00 44.25 2.66
434 1297 5.013913 GGAACTTTTTAGGGACTAGGGACTT 59.986 44.000 0.00 0.00 44.25 3.01
435 1298 4.535294 GGAACTTTTTAGGGACTAGGGACT 59.465 45.833 0.00 0.00 44.25 3.85
436 1299 4.535294 AGGAACTTTTTAGGGACTAGGGAC 59.465 45.833 0.00 0.00 37.71 4.46
437 1300 4.771338 AGGAACTTTTTAGGGACTAGGGA 58.229 43.478 0.00 0.00 37.71 4.20
454 1317 6.747739 GTCTCTGAAAACAAACAAGAAGGAAC 59.252 38.462 0.00 0.00 0.00 3.62
455 1318 6.659242 AGTCTCTGAAAACAAACAAGAAGGAA 59.341 34.615 0.00 0.00 0.00 3.36
456 1319 6.180472 AGTCTCTGAAAACAAACAAGAAGGA 58.820 36.000 0.00 0.00 0.00 3.36
457 1320 6.442513 AGTCTCTGAAAACAAACAAGAAGG 57.557 37.500 0.00 0.00 0.00 3.46
458 1321 9.840427 TTTTAGTCTCTGAAAACAAACAAGAAG 57.160 29.630 0.00 0.00 0.00 2.85
460 1323 9.840427 CTTTTTAGTCTCTGAAAACAAACAAGA 57.160 29.630 0.00 0.00 28.65 3.02
461 1324 9.626045 ACTTTTTAGTCTCTGAAAACAAACAAG 57.374 29.630 0.00 0.00 28.65 3.16
462 1325 9.620660 GACTTTTTAGTCTCTGAAAACAAACAA 57.379 29.630 0.00 0.00 36.01 2.83
463 1326 8.241367 GGACTTTTTAGTCTCTGAAAACAAACA 58.759 33.333 5.40 0.00 38.74 2.83
464 1327 7.701078 GGGACTTTTTAGTCTCTGAAAACAAAC 59.299 37.037 5.40 0.00 36.42 2.93
465 1328 7.614192 AGGGACTTTTTAGTCTCTGAAAACAAA 59.386 33.333 6.89 0.00 46.88 2.83
466 1329 7.116736 AGGGACTTTTTAGTCTCTGAAAACAA 58.883 34.615 6.89 0.00 46.88 2.83
467 1330 6.659824 AGGGACTTTTTAGTCTCTGAAAACA 58.340 36.000 6.89 0.00 46.88 2.83
475 1338 5.024785 AGGGACTAGGGACTTTTTAGTCTC 58.975 45.833 9.84 6.72 42.56 3.36
476 1339 5.026093 AGGGACTAGGGACTTTTTAGTCT 57.974 43.478 9.84 0.00 41.77 3.24
477 1340 5.624052 CGAAGGGACTAGGGACTTTTTAGTC 60.624 48.000 0.00 3.01 38.49 2.59
478 1341 4.222366 CGAAGGGACTAGGGACTTTTTAGT 59.778 45.833 0.00 0.00 38.49 2.24
479 1342 4.222366 ACGAAGGGACTAGGGACTTTTTAG 59.778 45.833 0.00 0.00 38.49 1.85
480 1343 4.162651 ACGAAGGGACTAGGGACTTTTTA 58.837 43.478 0.00 0.00 38.49 1.52
481 1344 2.977580 ACGAAGGGACTAGGGACTTTTT 59.022 45.455 0.00 0.00 38.49 1.94
482 1345 2.617658 ACGAAGGGACTAGGGACTTTT 58.382 47.619 0.00 0.00 38.49 2.27
483 1346 2.322339 ACGAAGGGACTAGGGACTTT 57.678 50.000 0.00 0.00 38.49 2.66
484 1347 2.579860 TCTACGAAGGGACTAGGGACTT 59.420 50.000 0.00 0.00 38.49 3.01
485 1348 2.173143 CTCTACGAAGGGACTAGGGACT 59.827 54.545 0.00 0.00 38.49 3.85
486 1349 2.172293 TCTCTACGAAGGGACTAGGGAC 59.828 54.545 0.00 0.00 38.49 4.46
487 1350 2.485659 TCTCTACGAAGGGACTAGGGA 58.514 52.381 0.00 0.00 38.49 4.20
488 1351 3.512219 ATCTCTACGAAGGGACTAGGG 57.488 52.381 0.00 0.00 38.49 3.53
489 1352 8.632906 TTAATAATCTCTACGAAGGGACTAGG 57.367 38.462 0.00 0.00 38.49 3.02
493 1356 9.194271 GTCATTTAATAATCTCTACGAAGGGAC 57.806 37.037 0.00 0.00 34.13 4.46
494 1357 8.365647 GGTCATTTAATAATCTCTACGAAGGGA 58.634 37.037 0.00 0.00 36.39 4.20
495 1358 8.148351 TGGTCATTTAATAATCTCTACGAAGGG 58.852 37.037 0.00 0.00 0.00 3.95
496 1359 9.712305 ATGGTCATTTAATAATCTCTACGAAGG 57.288 33.333 0.00 0.00 0.00 3.46
501 1364 9.884465 GCAACATGGTCATTTAATAATCTCTAC 57.116 33.333 0.00 0.00 0.00 2.59
502 1365 9.066892 GGCAACATGGTCATTTAATAATCTCTA 57.933 33.333 0.00 0.00 0.00 2.43
503 1366 7.014615 GGGCAACATGGTCATTTAATAATCTCT 59.985 37.037 0.00 0.00 39.74 3.10
504 1367 7.147976 GGGCAACATGGTCATTTAATAATCTC 58.852 38.462 0.00 0.00 39.74 2.75
505 1368 6.610830 TGGGCAACATGGTCATTTAATAATCT 59.389 34.615 0.00 0.00 39.74 2.40
506 1369 6.815089 TGGGCAACATGGTCATTTAATAATC 58.185 36.000 0.00 0.00 39.74 1.75
507 1370 6.805016 TGGGCAACATGGTCATTTAATAAT 57.195 33.333 0.00 0.00 39.74 1.28
508 1371 6.805016 ATGGGCAACATGGTCATTTAATAA 57.195 33.333 0.00 0.00 38.70 1.40
509 1372 7.066142 ACTATGGGCAACATGGTCATTTAATA 58.934 34.615 0.00 0.00 46.94 0.98
510 1373 5.898972 ACTATGGGCAACATGGTCATTTAAT 59.101 36.000 0.00 0.00 46.94 1.40
511 1374 5.268387 ACTATGGGCAACATGGTCATTTAA 58.732 37.500 0.00 0.00 46.94 1.52
512 1375 4.865905 ACTATGGGCAACATGGTCATTTA 58.134 39.130 0.00 0.00 46.94 1.40
513 1376 3.711863 ACTATGGGCAACATGGTCATTT 58.288 40.909 0.00 0.00 46.94 2.32
514 1377 3.386932 ACTATGGGCAACATGGTCATT 57.613 42.857 0.00 0.00 46.94 2.57
515 1378 4.729552 ATACTATGGGCAACATGGTCAT 57.270 40.909 11.82 0.00 46.94 3.06
516 1379 5.841267 ATATACTATGGGCAACATGGTCA 57.159 39.130 11.82 4.14 46.94 4.02
517 1380 7.182817 TCTATATACTATGGGCAACATGGTC 57.817 40.000 11.82 0.00 46.94 4.02
519 1382 8.862325 TTTTCTATATACTATGGGCAACATGG 57.138 34.615 0.00 3.33 43.13 3.66
541 1404 9.447157 CCCATGGTGTTGTTTGATTATATTTTT 57.553 29.630 11.73 0.00 0.00 1.94
542 1405 8.046107 CCCCATGGTGTTGTTTGATTATATTTT 58.954 33.333 11.73 0.00 0.00 1.82
543 1406 7.181845 ACCCCATGGTGTTGTTTGATTATATTT 59.818 33.333 11.73 0.00 45.58 1.40
544 1407 6.671779 ACCCCATGGTGTTGTTTGATTATATT 59.328 34.615 11.73 0.00 45.58 1.28
545 1408 6.201591 ACCCCATGGTGTTGTTTGATTATAT 58.798 36.000 11.73 0.00 45.58 0.86
546 1409 5.584913 ACCCCATGGTGTTGTTTGATTATA 58.415 37.500 11.73 0.00 45.58 0.98
547 1410 4.424842 ACCCCATGGTGTTGTTTGATTAT 58.575 39.130 11.73 0.00 45.58 1.28
548 1411 3.850752 ACCCCATGGTGTTGTTTGATTA 58.149 40.909 11.73 0.00 45.58 1.75
549 1412 2.688477 ACCCCATGGTGTTGTTTGATT 58.312 42.857 11.73 0.00 45.58 2.57
550 1413 2.397044 ACCCCATGGTGTTGTTTGAT 57.603 45.000 11.73 0.00 45.58 2.57
551 1414 3.935371 ACCCCATGGTGTTGTTTGA 57.065 47.368 11.73 0.00 45.58 2.69
572 1435 3.840594 CATGCACCCATTGGCCCG 61.841 66.667 0.00 0.00 33.59 6.13
573 1436 1.963464 CTTCATGCACCCATTGGCCC 61.963 60.000 0.00 0.00 33.59 5.80
574 1437 1.518774 CTTCATGCACCCATTGGCC 59.481 57.895 0.00 0.00 33.59 5.36
575 1438 1.518774 CCTTCATGCACCCATTGGC 59.481 57.895 0.00 0.00 33.59 4.52
576 1439 0.324552 TCCCTTCATGCACCCATTGG 60.325 55.000 0.00 0.00 37.80 3.16
577 1440 0.819582 GTCCCTTCATGCACCCATTG 59.180 55.000 0.00 0.00 0.00 2.82
578 1441 0.409092 TGTCCCTTCATGCACCCATT 59.591 50.000 0.00 0.00 0.00 3.16
579 1442 0.632835 ATGTCCCTTCATGCACCCAT 59.367 50.000 0.00 0.00 0.00 4.00
580 1443 0.409092 AATGTCCCTTCATGCACCCA 59.591 50.000 0.00 0.00 0.00 4.51
581 1444 0.819582 CAATGTCCCTTCATGCACCC 59.180 55.000 0.00 0.00 0.00 4.61
582 1445 1.549203 ACAATGTCCCTTCATGCACC 58.451 50.000 0.00 0.00 0.00 5.01
583 1446 2.353011 CCAACAATGTCCCTTCATGCAC 60.353 50.000 0.00 0.00 0.00 4.57
584 1447 1.894466 CCAACAATGTCCCTTCATGCA 59.106 47.619 0.00 0.00 0.00 3.96
585 1448 2.170166 TCCAACAATGTCCCTTCATGC 58.830 47.619 0.00 0.00 0.00 4.06
586 1449 4.870123 TTTCCAACAATGTCCCTTCATG 57.130 40.909 0.00 0.00 0.00 3.07
587 1450 4.901250 ACTTTTCCAACAATGTCCCTTCAT 59.099 37.500 0.00 0.00 0.00 2.57
588 1451 4.285863 ACTTTTCCAACAATGTCCCTTCA 58.714 39.130 0.00 0.00 0.00 3.02
589 1452 4.262036 GGACTTTTCCAACAATGTCCCTTC 60.262 45.833 7.08 0.00 41.80 3.46
590 1453 3.641436 GGACTTTTCCAACAATGTCCCTT 59.359 43.478 7.08 0.00 41.80 3.95
591 1454 3.230976 GGACTTTTCCAACAATGTCCCT 58.769 45.455 7.08 0.00 41.80 4.20
592 1455 3.660501 GGACTTTTCCAACAATGTCCC 57.339 47.619 7.08 0.00 41.80 4.46
593 1456 2.962421 TGGGACTTTTCCAACAATGTCC 59.038 45.455 9.10 9.10 44.98 4.02
594 1457 4.664150 TTGGGACTTTTCCAACAATGTC 57.336 40.909 0.00 0.00 44.98 3.06
595 1458 5.428184 TTTTGGGACTTTTCCAACAATGT 57.572 34.783 0.00 0.00 44.98 2.71
596 1459 6.037062 GTCTTTTTGGGACTTTTCCAACAATG 59.963 38.462 0.00 0.00 44.98 2.82
597 1460 6.070251 AGTCTTTTTGGGACTTTTCCAACAAT 60.070 34.615 0.00 0.00 44.98 2.71
598 1461 5.247337 AGTCTTTTTGGGACTTTTCCAACAA 59.753 36.000 0.00 0.00 44.98 2.83
599 1462 4.775253 AGTCTTTTTGGGACTTTTCCAACA 59.225 37.500 0.00 0.00 44.98 3.33
600 1463 5.127194 AGAGTCTTTTTGGGACTTTTCCAAC 59.873 40.000 0.00 0.00 44.98 3.77
601 1464 5.269189 AGAGTCTTTTTGGGACTTTTCCAA 58.731 37.500 0.00 0.00 44.98 3.53
602 1465 4.867086 AGAGTCTTTTTGGGACTTTTCCA 58.133 39.130 0.00 0.00 44.98 3.53
603 1466 4.278669 GGAGAGTCTTTTTGGGACTTTTCC 59.721 45.833 0.00 0.00 43.13 3.13
604 1467 5.133941 AGGAGAGTCTTTTTGGGACTTTTC 58.866 41.667 0.00 0.00 43.13 2.29
605 1468 5.130705 AGGAGAGTCTTTTTGGGACTTTT 57.869 39.130 0.00 0.00 43.13 2.27
606 1469 4.797912 AGGAGAGTCTTTTTGGGACTTT 57.202 40.909 0.00 0.00 43.13 2.66
607 1470 4.166144 TCAAGGAGAGTCTTTTTGGGACTT 59.834 41.667 14.13 0.00 43.13 3.01
608 1471 3.716872 TCAAGGAGAGTCTTTTTGGGACT 59.283 43.478 14.13 0.00 45.37 3.85
609 1472 4.068599 CTCAAGGAGAGTCTTTTTGGGAC 58.931 47.826 10.42 0.00 39.62 4.46
610 1473 3.973973 TCTCAAGGAGAGTCTTTTTGGGA 59.026 43.478 13.30 13.30 44.98 4.37
611 1474 4.357918 TCTCAAGGAGAGTCTTTTTGGG 57.642 45.455 14.13 12.10 44.98 4.12
622 1485 6.678568 AAATGAAGAAGACTCTCAAGGAGA 57.321 37.500 0.00 0.00 44.45 3.71
623 1486 7.610865 ACTAAATGAAGAAGACTCTCAAGGAG 58.389 38.462 0.00 0.00 46.87 3.69
624 1487 7.453126 AGACTAAATGAAGAAGACTCTCAAGGA 59.547 37.037 0.00 0.00 0.00 3.36
625 1488 7.610865 AGACTAAATGAAGAAGACTCTCAAGG 58.389 38.462 0.00 0.00 0.00 3.61
626 1489 8.303156 TGAGACTAAATGAAGAAGACTCTCAAG 58.697 37.037 0.00 0.00 34.51 3.02
627 1490 8.183104 TGAGACTAAATGAAGAAGACTCTCAA 57.817 34.615 0.00 0.00 34.51 3.02
628 1491 7.767250 TGAGACTAAATGAAGAAGACTCTCA 57.233 36.000 0.00 0.00 34.51 3.27
629 1492 9.651913 ATTTGAGACTAAATGAAGAAGACTCTC 57.348 33.333 0.00 0.00 34.51 3.20
630 1493 9.434420 CATTTGAGACTAAATGAAGAAGACTCT 57.566 33.333 5.52 0.00 46.13 3.24
631 1494 8.174422 GCATTTGAGACTAAATGAAGAAGACTC 58.826 37.037 13.61 0.00 46.13 3.36
632 1495 7.120432 GGCATTTGAGACTAAATGAAGAAGACT 59.880 37.037 13.61 0.00 46.13 3.24
633 1496 7.120432 AGGCATTTGAGACTAAATGAAGAAGAC 59.880 37.037 13.61 0.00 46.13 3.01
634 1497 7.170965 AGGCATTTGAGACTAAATGAAGAAGA 58.829 34.615 13.61 0.00 46.13 2.87
635 1498 7.388460 AGGCATTTGAGACTAAATGAAGAAG 57.612 36.000 13.61 0.00 46.13 2.85
636 1499 8.103305 ACTAGGCATTTGAGACTAAATGAAGAA 58.897 33.333 13.61 0.00 46.13 2.52
637 1500 7.624549 ACTAGGCATTTGAGACTAAATGAAGA 58.375 34.615 13.61 0.00 46.13 2.87
638 1501 7.856145 ACTAGGCATTTGAGACTAAATGAAG 57.144 36.000 13.61 9.76 46.13 3.02
639 1502 8.635765 AAACTAGGCATTTGAGACTAAATGAA 57.364 30.769 13.61 0.40 46.13 2.57
640 1503 9.383519 CTAAACTAGGCATTTGAGACTAAATGA 57.616 33.333 13.61 0.00 46.13 2.57
641 1504 9.167311 ACTAAACTAGGCATTTGAGACTAAATG 57.833 33.333 6.81 6.81 46.03 2.32
642 1505 9.384764 GACTAAACTAGGCATTTGAGACTAAAT 57.615 33.333 0.00 0.00 32.68 1.40
643 1506 7.822822 GGACTAAACTAGGCATTTGAGACTAAA 59.177 37.037 0.00 0.00 34.70 1.85
644 1507 7.180408 AGGACTAAACTAGGCATTTGAGACTAA 59.820 37.037 0.00 0.00 34.70 2.24
645 1508 6.668283 AGGACTAAACTAGGCATTTGAGACTA 59.332 38.462 0.00 0.00 34.70 2.59
646 1509 5.485708 AGGACTAAACTAGGCATTTGAGACT 59.514 40.000 0.00 0.00 34.70 3.24
647 1510 5.735766 AGGACTAAACTAGGCATTTGAGAC 58.264 41.667 0.00 0.00 34.70 3.36
648 1511 6.374417 AAGGACTAAACTAGGCATTTGAGA 57.626 37.500 0.00 0.00 33.29 3.27
649 1512 8.561738 TTTAAGGACTAAACTAGGCATTTGAG 57.438 34.615 0.00 0.00 38.91 3.02
650 1513 8.927675 TTTTAAGGACTAAACTAGGCATTTGA 57.072 30.769 0.00 0.00 38.91 2.69
651 1514 9.626045 CTTTTTAAGGACTAAACTAGGCATTTG 57.374 33.333 0.00 0.00 38.91 2.32
652 1515 9.363401 ACTTTTTAAGGACTAAACTAGGCATTT 57.637 29.630 0.00 0.00 38.91 2.32
653 1516 8.935614 ACTTTTTAAGGACTAAACTAGGCATT 57.064 30.769 0.00 0.00 41.33 3.56
654 1517 7.610692 GGACTTTTTAAGGACTAAACTAGGCAT 59.389 37.037 0.00 0.00 34.70 4.40
655 1518 6.938596 GGACTTTTTAAGGACTAAACTAGGCA 59.061 38.462 0.00 0.00 34.70 4.75
656 1519 6.373774 GGGACTTTTTAAGGACTAAACTAGGC 59.626 42.308 0.00 0.00 0.00 3.93
657 1520 7.687388 AGGGACTTTTTAAGGACTAAACTAGG 58.313 38.462 0.00 0.00 27.25 3.02
702 1565 9.634163 GGACTAGAAAAAGAAAGTCTCTCTTAG 57.366 37.037 0.00 0.00 38.69 2.18
703 1566 9.144298 TGGACTAGAAAAAGAAAGTCTCTCTTA 57.856 33.333 0.00 0.00 38.69 2.10
704 1567 8.024145 TGGACTAGAAAAAGAAAGTCTCTCTT 57.976 34.615 0.00 0.00 38.69 2.85
705 1568 7.604657 TGGACTAGAAAAAGAAAGTCTCTCT 57.395 36.000 0.00 0.00 38.69 3.10
735 1598 5.189928 GGTGTTTTGTTTCCAGGGATTTTT 58.810 37.500 0.00 0.00 0.00 1.94
736 1599 4.384757 GGGTGTTTTGTTTCCAGGGATTTT 60.385 41.667 0.00 0.00 0.00 1.82
737 1600 3.135712 GGGTGTTTTGTTTCCAGGGATTT 59.864 43.478 0.00 0.00 0.00 2.17
738 1601 2.703536 GGGTGTTTTGTTTCCAGGGATT 59.296 45.455 0.00 0.00 0.00 3.01
739 1602 2.325484 GGGTGTTTTGTTTCCAGGGAT 58.675 47.619 0.00 0.00 0.00 3.85
740 1603 1.689892 GGGGTGTTTTGTTTCCAGGGA 60.690 52.381 0.00 0.00 0.00 4.20
741 1604 0.756294 GGGGTGTTTTGTTTCCAGGG 59.244 55.000 0.00 0.00 0.00 4.45
742 1605 1.686587 GAGGGGTGTTTTGTTTCCAGG 59.313 52.381 0.00 0.00 0.00 4.45
743 1606 2.362077 CTGAGGGGTGTTTTGTTTCCAG 59.638 50.000 0.00 0.00 0.00 3.86
744 1607 2.383855 CTGAGGGGTGTTTTGTTTCCA 58.616 47.619 0.00 0.00 0.00 3.53
745 1608 1.068588 GCTGAGGGGTGTTTTGTTTCC 59.931 52.381 0.00 0.00 0.00 3.13
746 1609 1.068588 GGCTGAGGGGTGTTTTGTTTC 59.931 52.381 0.00 0.00 0.00 2.78
747 1610 1.119684 GGCTGAGGGGTGTTTTGTTT 58.880 50.000 0.00 0.00 0.00 2.83
748 1611 0.261696 AGGCTGAGGGGTGTTTTGTT 59.738 50.000 0.00 0.00 0.00 2.83
749 1612 0.178990 GAGGCTGAGGGGTGTTTTGT 60.179 55.000 0.00 0.00 0.00 2.83
750 1613 0.895559 GGAGGCTGAGGGGTGTTTTG 60.896 60.000 0.00 0.00 0.00 2.44
751 1614 1.360393 TGGAGGCTGAGGGGTGTTTT 61.360 55.000 0.00 0.00 0.00 2.43
752 1615 1.142688 ATGGAGGCTGAGGGGTGTTT 61.143 55.000 0.00 0.00 0.00 2.83
753 1616 1.542375 ATGGAGGCTGAGGGGTGTT 60.542 57.895 0.00 0.00 0.00 3.32
754 1617 1.997874 GATGGAGGCTGAGGGGTGT 60.998 63.158 0.00 0.00 0.00 4.16
755 1618 1.351080 ATGATGGAGGCTGAGGGGTG 61.351 60.000 0.00 0.00 0.00 4.61
756 1619 1.005289 ATGATGGAGGCTGAGGGGT 59.995 57.895 0.00 0.00 0.00 4.95
757 1620 1.759881 GATGATGGAGGCTGAGGGG 59.240 63.158 0.00 0.00 0.00 4.79
758 1621 1.117749 TCGATGATGGAGGCTGAGGG 61.118 60.000 0.00 0.00 0.00 4.30
759 1622 0.317799 CTCGATGATGGAGGCTGAGG 59.682 60.000 0.00 0.00 0.00 3.86
824 1687 1.352156 CTGCACCGCTCCGAGTAAAC 61.352 60.000 0.00 0.00 0.00 2.01
825 1688 1.080093 CTGCACCGCTCCGAGTAAA 60.080 57.895 0.00 0.00 0.00 2.01
869 1733 4.722700 TTTCCCGAGCTGGCTGGC 62.723 66.667 0.00 0.00 35.87 4.85
870 1734 2.437359 CTTTCCCGAGCTGGCTGG 60.437 66.667 0.00 0.00 35.87 4.85
871 1735 2.437359 CCTTTCCCGAGCTGGCTG 60.437 66.667 0.00 0.00 35.87 4.85
872 1736 2.190488 CTTCCTTTCCCGAGCTGGCT 62.190 60.000 0.00 0.00 35.87 4.75
881 1745 3.440522 CCTTTTCGTCATCTTCCTTTCCC 59.559 47.826 0.00 0.00 0.00 3.97
893 1757 4.097286 CCCACTTTTTCTTCCTTTTCGTCA 59.903 41.667 0.00 0.00 0.00 4.35
1072 1978 0.970937 CAGTACGCTCCTCCTTGGGA 60.971 60.000 0.00 0.00 36.20 4.37
1098 2008 2.364324 AGCTCTGGTTTCGGCGAATATA 59.636 45.455 24.33 5.68 0.00 0.86
1152 2062 0.451783 GCCGAGTTACCAGCCAATTG 59.548 55.000 0.00 0.00 0.00 2.32
1370 2280 4.065088 TCAACGATTGGGAAACTGAGAAG 58.935 43.478 0.00 0.00 0.00 2.85
1383 2293 2.723010 GCAGAGCGAGTTTCAACGATTG 60.723 50.000 0.00 0.00 0.00 2.67
1640 2560 3.374402 ACTGCAGGAGGACGACGG 61.374 66.667 19.93 0.00 0.00 4.79
1810 2730 0.036010 AATTGACGTCCCTGAGGCTG 60.036 55.000 14.12 0.00 0.00 4.85
1845 2765 4.101448 CAGCCCCTCCCGTTCCTG 62.101 72.222 0.00 0.00 0.00 3.86
1924 2844 0.394565 GAGGAACAGTCACCAGCACT 59.605 55.000 0.00 0.00 0.00 4.40
1925 2845 0.394565 AGAGGAACAGTCACCAGCAC 59.605 55.000 0.00 0.00 0.00 4.40
1926 2846 0.394192 CAGAGGAACAGTCACCAGCA 59.606 55.000 0.00 0.00 0.00 4.41
1927 2847 0.952984 GCAGAGGAACAGTCACCAGC 60.953 60.000 0.00 0.00 0.00 4.85
1928 2848 0.683973 AGCAGAGGAACAGTCACCAG 59.316 55.000 0.00 0.00 0.00 4.00
1929 2849 0.681733 GAGCAGAGGAACAGTCACCA 59.318 55.000 0.00 0.00 0.00 4.17
1930 2850 0.972883 AGAGCAGAGGAACAGTCACC 59.027 55.000 0.00 0.00 0.00 4.02
1931 2851 2.411904 CAAGAGCAGAGGAACAGTCAC 58.588 52.381 0.00 0.00 0.00 3.67
1945 2865 3.050275 GTCACGTGGCCCAAGAGC 61.050 66.667 17.00 0.00 0.00 4.09
1968 2888 5.230942 ACGAACAAGAAATACACCTCTCAG 58.769 41.667 0.00 0.00 0.00 3.35
1996 2917 4.287067 ACTGACATGTGGTCCAAGTTCTAT 59.713 41.667 1.15 0.00 46.38 1.98
2021 2942 2.870411 GTGGCACCGGAAATACACTATC 59.130 50.000 9.46 0.00 0.00 2.08
2025 2946 1.310216 GGGTGGCACCGGAAATACAC 61.310 60.000 29.18 9.22 39.83 2.90
2026 2947 1.001887 GGGTGGCACCGGAAATACA 60.002 57.895 29.18 0.00 39.83 2.29
2027 2948 3.914094 GGGTGGCACCGGAAATAC 58.086 61.111 29.18 10.73 39.83 1.89
2112 3033 8.440771 AGAAGATAAGGAAACAGAGGAGAAAAA 58.559 33.333 0.00 0.00 0.00 1.94
2173 3094 6.571605 AGGGAAAGTACTAGCGAAAGAATAC 58.428 40.000 0.00 0.00 0.00 1.89
2257 7126 0.947244 GTGCTTCTCTGGTGTGGTTG 59.053 55.000 0.00 0.00 0.00 3.77
2260 7129 0.947244 GTTGTGCTTCTCTGGTGTGG 59.053 55.000 0.00 0.00 0.00 4.17
2575 7444 4.571984 GCAACAAAAATTGAAGCTGGTTCT 59.428 37.500 19.08 0.00 35.99 3.01
2742 7613 5.563475 CGGCAGATGGATCCAATACAAAATC 60.563 44.000 20.67 9.13 0.00 2.17
2743 7614 4.279169 CGGCAGATGGATCCAATACAAAAT 59.721 41.667 20.67 0.00 0.00 1.82
2771 7642 1.374252 GCGTGAGGGAGAAAAGCGA 60.374 57.895 0.00 0.00 0.00 4.93
2875 7746 0.934901 CGTCGTCATCACCATAGCCG 60.935 60.000 0.00 0.00 0.00 5.52
2876 7747 0.384309 TCGTCGTCATCACCATAGCC 59.616 55.000 0.00 0.00 0.00 3.93
2877 7748 1.065701 AGTCGTCGTCATCACCATAGC 59.934 52.381 0.00 0.00 0.00 2.97


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.