Multiple sequence alignment - TraesCS1D01G230000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G230000 chr1D 100.000 4646 0 0 1 4646 318165138 318160493 0.000000e+00 8580.0
1 TraesCS1D01G230000 chr1D 84.881 1012 118 27 2634 3631 317997155 317996165 0.000000e+00 989.0
2 TraesCS1D01G230000 chr1D 87.640 178 21 1 3462 3639 318124636 318124460 6.090000e-49 206.0
3 TraesCS1D01G230000 chr1D 97.619 42 1 0 4397 4438 420216197 420216238 6.450000e-09 73.1
4 TraesCS1D01G230000 chr1B 90.133 2848 169 44 286 3097 429979841 429977070 0.000000e+00 3600.0
5 TraesCS1D01G230000 chr1B 90.332 993 56 16 3111 4071 429977020 429976036 0.000000e+00 1266.0
6 TraesCS1D01G230000 chr1B 92.526 776 57 1 2643 3418 16228491 16229265 0.000000e+00 1110.0
7 TraesCS1D01G230000 chr1B 91.628 215 12 2 1237 1451 429768071 429767863 4.550000e-75 292.0
8 TraesCS1D01G230000 chr1A 91.647 1712 91 18 2390 4073 399472906 399471219 0.000000e+00 2322.0
9 TraesCS1D01G230000 chr1A 80.300 1000 105 39 564 1544 399474574 399473648 0.000000e+00 671.0
10 TraesCS1D01G230000 chr1A 86.240 516 31 19 1677 2190 399473580 399473103 1.480000e-144 523.0
11 TraesCS1D01G230000 chr1A 82.857 210 23 7 368 572 399474799 399474598 4.780000e-40 176.0
12 TraesCS1D01G230000 chr1A 91.379 58 5 0 1581 1638 399473636 399473579 3.850000e-11 80.5
13 TraesCS1D01G230000 chr2D 93.885 785 42 1 2643 3421 79515802 79515018 0.000000e+00 1179.0
14 TraesCS1D01G230000 chr2D 87.838 1036 66 24 1164 2190 79517177 79516193 0.000000e+00 1160.0
15 TraesCS1D01G230000 chr2D 90.659 182 15 2 4061 4242 132364540 132364719 1.670000e-59 241.0
16 TraesCS1D01G230000 chr7A 93.325 779 51 1 2643 3421 254260920 254260143 0.000000e+00 1149.0
17 TraesCS1D01G230000 chr7A 87.957 847 50 23 1352 2190 254261925 254261123 0.000000e+00 952.0
18 TraesCS1D01G230000 chr7A 88.444 225 23 3 1170 1394 32699883 32699662 7.660000e-68 268.0
19 TraesCS1D01G230000 chr6D 87.560 1037 73 26 1164 2190 443452767 443453757 0.000000e+00 1149.0
20 TraesCS1D01G230000 chr6D 87.367 1037 75 26 1164 2190 443351658 443352648 0.000000e+00 1138.0
21 TraesCS1D01G230000 chr6D 93.077 780 50 2 2643 3418 443352839 443353618 0.000000e+00 1138.0
22 TraesCS1D01G230000 chr6D 92.692 780 52 3 2643 3418 443453948 443454726 0.000000e+00 1120.0
23 TraesCS1D01G230000 chr6D 98.077 416 8 0 4231 4646 457494835 457495250 0.000000e+00 725.0
24 TraesCS1D01G230000 chr6D 94.603 315 17 0 4073 4387 18613069 18612755 5.400000e-134 488.0
25 TraesCS1D01G230000 chr6D 99.015 203 1 1 4444 4646 320013753 320013954 3.420000e-96 363.0
26 TraesCS1D01G230000 chr6D 97.436 39 1 0 4400 4438 320015809 320015771 3.000000e-07 67.6
27 TraesCS1D01G230000 chr6A 92.426 779 56 1 2643 3418 612595248 612596026 0.000000e+00 1109.0
28 TraesCS1D01G230000 chr6A 91.011 178 14 2 4063 4240 264444702 264444877 6.010000e-59 239.0
29 TraesCS1D01G230000 chr6A 89.674 184 18 1 4058 4240 483465096 483464913 2.800000e-57 233.0
30 TraesCS1D01G230000 chr6A 84.729 203 13 7 1990 2190 612594866 612595052 2.210000e-43 187.0
31 TraesCS1D01G230000 chr6B 92.139 776 60 1 2643 3418 59413473 59414247 0.000000e+00 1094.0
32 TraesCS1D01G230000 chr2B 91.388 778 65 2 2644 3421 523787917 523787142 0.000000e+00 1064.0
33 TraesCS1D01G230000 chr7B 86.441 885 84 16 1168 2045 623109244 623110099 0.000000e+00 937.0
34 TraesCS1D01G230000 chr7B 88.182 220 25 1 1174 1393 498883300 498883082 1.280000e-65 261.0
35 TraesCS1D01G230000 chr7B 95.833 48 2 0 2041 2088 623111285 623111332 1.390000e-10 78.7
36 TraesCS1D01G230000 chr3D 91.156 588 23 16 4074 4646 447497443 447496870 0.000000e+00 771.0
37 TraesCS1D01G230000 chr3D 93.433 335 22 0 4069 4403 410497646 410497312 8.980000e-137 497.0
38 TraesCS1D01G230000 chr3D 93.333 330 22 0 4074 4403 28697791 28697462 5.400000e-134 488.0
39 TraesCS1D01G230000 chr3D 88.325 197 17 4 4048 4240 225163772 225163966 1.010000e-56 231.0
40 TraesCS1D01G230000 chr5D 98.317 416 7 0 4231 4646 490578861 490578446 0.000000e+00 730.0
41 TraesCS1D01G230000 chr5D 93.575 358 16 4 4061 4412 284554097 284553741 1.140000e-145 527.0
42 TraesCS1D01G230000 chr5D 97.394 307 7 1 4231 4537 125816821 125817126 5.330000e-144 521.0
43 TraesCS1D01G230000 chr5D 99.492 197 1 0 4450 4646 544909351 544909155 4.420000e-95 359.0
44 TraesCS1D01G230000 chr5D 92.095 253 20 0 4074 4326 304833081 304832829 1.590000e-94 357.0
45 TraesCS1D01G230000 chr5D 90.805 174 16 0 4067 4240 218744706 218744533 2.800000e-57 233.0
46 TraesCS1D01G230000 chr5D 97.436 39 1 0 4400 4438 125818976 125818938 3.000000e-07 67.6
47 TraesCS1D01G230000 chr5D 95.238 42 2 0 4397 4438 490576658 490576699 3.000000e-07 67.6
48 TraesCS1D01G230000 chr4D 97.115 416 12 0 4231 4646 135635795 135636210 0.000000e+00 702.0
49 TraesCS1D01G230000 chr4D 93.353 331 22 0 4073 4403 200606731 200606401 1.500000e-134 490.0
50 TraesCS1D01G230000 chr4D 93.051 331 23 0 4073 4403 497097391 497097721 6.990000e-133 484.0
51 TraesCS1D01G230000 chr4D 98.515 202 3 0 4445 4646 122241281 122241482 1.590000e-94 357.0
52 TraesCS1D01G230000 chr4D 90.556 180 17 0 4061 4240 241493583 241493404 6.010000e-59 239.0
53 TraesCS1D01G230000 chr7D 89.645 338 34 1 4066 4403 238133596 238133260 3.320000e-116 429.0
54 TraesCS1D01G230000 chr7D 99.010 202 2 0 4445 4646 127498013 127497812 3.420000e-96 363.0
55 TraesCS1D01G230000 chr7D 91.257 183 15 1 4058 4240 162851611 162851792 9.980000e-62 248.0
56 TraesCS1D01G230000 chrUn 100.000 203 0 0 4444 4646 468799402 468799200 4.390000e-100 375.0
57 TraesCS1D01G230000 chrUn 87.313 268 15 10 1926 2190 479154781 479154530 5.880000e-74 289.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G230000 chr1D 318160493 318165138 4645 True 8580.00 8580 100.0000 1 4646 1 chr1D.!!$R3 4645
1 TraesCS1D01G230000 chr1D 317996165 317997155 990 True 989.00 989 84.8810 2634 3631 1 chr1D.!!$R1 997
2 TraesCS1D01G230000 chr1B 429976036 429979841 3805 True 2433.00 3600 90.2325 286 4071 2 chr1B.!!$R2 3785
3 TraesCS1D01G230000 chr1B 16228491 16229265 774 False 1110.00 1110 92.5260 2643 3418 1 chr1B.!!$F1 775
4 TraesCS1D01G230000 chr1A 399471219 399474799 3580 True 754.50 2322 86.4846 368 4073 5 chr1A.!!$R1 3705
5 TraesCS1D01G230000 chr2D 79515018 79517177 2159 True 1169.50 1179 90.8615 1164 3421 2 chr2D.!!$R1 2257
6 TraesCS1D01G230000 chr7A 254260143 254261925 1782 True 1050.50 1149 90.6410 1352 3421 2 chr7A.!!$R2 2069
7 TraesCS1D01G230000 chr6D 443351658 443353618 1960 False 1138.00 1138 90.2220 1164 3418 2 chr6D.!!$F3 2254
8 TraesCS1D01G230000 chr6D 443452767 443454726 1959 False 1134.50 1149 90.1260 1164 3418 2 chr6D.!!$F4 2254
9 TraesCS1D01G230000 chr6A 612594866 612596026 1160 False 648.00 1109 88.5775 1990 3418 2 chr6A.!!$F2 1428
10 TraesCS1D01G230000 chr6B 59413473 59414247 774 False 1094.00 1094 92.1390 2643 3418 1 chr6B.!!$F1 775
11 TraesCS1D01G230000 chr2B 523787142 523787917 775 True 1064.00 1064 91.3880 2644 3421 1 chr2B.!!$R1 777
12 TraesCS1D01G230000 chr7B 623109244 623111332 2088 False 507.85 937 91.1370 1168 2088 2 chr7B.!!$F1 920
13 TraesCS1D01G230000 chr3D 447496870 447497443 573 True 771.00 771 91.1560 4074 4646 1 chr3D.!!$R3 572

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.030638 TTTCTGCTGCGCTGGTTTTC 59.969 50.000 16.47 0.0 0.00 2.29 F
934 1002 0.107945 AGCAATCCTCGCTTCCTGTC 60.108 55.000 0.00 0.0 35.82 3.51 F
2110 3406 0.325203 AGCCACAAAAGGTGTTGGGT 60.325 50.000 0.00 0.0 46.44 4.51 F
2111 3407 0.539518 GCCACAAAAGGTGTTGGGTT 59.460 50.000 0.00 0.0 46.44 4.11 F
2112 3408 1.065782 GCCACAAAAGGTGTTGGGTTT 60.066 47.619 0.00 0.0 46.44 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1164 1243 0.105709 CCTCCTCCTCCTTCCTCTCC 60.106 65.000 0.00 0.0 0.00 3.71 R
2928 4534 1.375908 GATGGACAGAGCCGTGCAA 60.376 57.895 0.00 0.0 40.83 4.08 R
3421 5084 0.034476 TCAGTCTGCTGTGCTGGAAG 59.966 55.000 14.05 0.0 43.05 3.46 R
3445 5108 0.251698 TGCCCAAGATGTTGCCATGA 60.252 50.000 0.00 0.0 31.64 3.07 R
3748 5419 0.730265 CCTTCTGGTCGTCTCTCTCG 59.270 60.000 0.00 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.416351 GGGGGCTAGGTTTCTGCT 58.584 61.111 0.00 0.00 0.00 4.24
23 24 1.077429 GGGGGCTAGGTTTCTGCTG 60.077 63.158 0.00 0.00 0.00 4.41
24 25 1.750780 GGGGCTAGGTTTCTGCTGC 60.751 63.158 0.00 0.00 0.00 5.25
25 26 2.109126 GGGCTAGGTTTCTGCTGCG 61.109 63.158 0.00 0.00 0.00 5.18
26 27 2.754995 GGCTAGGTTTCTGCTGCGC 61.755 63.158 0.00 0.00 0.00 6.09
27 28 1.743252 GCTAGGTTTCTGCTGCGCT 60.743 57.895 9.73 0.00 0.00 5.92
28 29 1.975363 GCTAGGTTTCTGCTGCGCTG 61.975 60.000 9.73 10.04 0.00 5.18
29 30 1.364626 CTAGGTTTCTGCTGCGCTGG 61.365 60.000 16.47 6.50 0.00 4.85
30 31 2.111999 TAGGTTTCTGCTGCGCTGGT 62.112 55.000 16.47 0.00 0.00 4.00
31 32 2.555547 GGTTTCTGCTGCGCTGGTT 61.556 57.895 16.47 0.00 0.00 3.67
32 33 1.360192 GTTTCTGCTGCGCTGGTTT 59.640 52.632 16.47 0.00 0.00 3.27
33 34 0.249031 GTTTCTGCTGCGCTGGTTTT 60.249 50.000 16.47 0.00 0.00 2.43
34 35 0.030638 TTTCTGCTGCGCTGGTTTTC 59.969 50.000 16.47 0.00 0.00 2.29
35 36 1.795170 TTCTGCTGCGCTGGTTTTCC 61.795 55.000 16.47 0.00 41.14 3.13
36 37 3.273080 CTGCTGCGCTGGTTTTCCC 62.273 63.158 16.47 0.00 39.73 3.97
37 38 4.056125 GCTGCGCTGGTTTTCCCC 62.056 66.667 16.47 0.00 39.73 4.81
38 39 2.597217 CTGCGCTGGTTTTCCCCA 60.597 61.111 9.73 0.00 39.73 4.96
39 40 2.909965 TGCGCTGGTTTTCCCCAC 60.910 61.111 9.73 0.00 39.73 4.61
40 41 2.909965 GCGCTGGTTTTCCCCACA 60.910 61.111 0.00 0.00 39.73 4.17
41 42 2.494530 GCGCTGGTTTTCCCCACAA 61.495 57.895 0.00 0.00 39.73 3.33
42 43 1.815817 GCGCTGGTTTTCCCCACAAT 61.816 55.000 0.00 0.00 39.73 2.71
43 44 1.540267 CGCTGGTTTTCCCCACAATA 58.460 50.000 0.00 0.00 39.73 1.90
44 45 2.099405 CGCTGGTTTTCCCCACAATAT 58.901 47.619 0.00 0.00 39.73 1.28
45 46 3.283751 CGCTGGTTTTCCCCACAATATA 58.716 45.455 0.00 0.00 39.73 0.86
46 47 3.697045 CGCTGGTTTTCCCCACAATATAA 59.303 43.478 0.00 0.00 39.73 0.98
47 48 4.158764 CGCTGGTTTTCCCCACAATATAAA 59.841 41.667 0.00 0.00 39.73 1.40
48 49 5.163457 CGCTGGTTTTCCCCACAATATAAAT 60.163 40.000 0.00 0.00 39.73 1.40
49 50 6.048509 GCTGGTTTTCCCCACAATATAAATG 58.951 40.000 0.00 0.00 39.73 2.32
50 51 6.127196 GCTGGTTTTCCCCACAATATAAATGA 60.127 38.462 0.00 0.00 39.73 2.57
51 52 7.176589 TGGTTTTCCCCACAATATAAATGAC 57.823 36.000 0.00 0.00 39.73 3.06
52 53 6.726299 TGGTTTTCCCCACAATATAAATGACA 59.274 34.615 0.00 0.00 39.73 3.58
53 54 7.039270 GGTTTTCCCCACAATATAAATGACAC 58.961 38.462 0.00 0.00 0.00 3.67
54 55 7.093509 GGTTTTCCCCACAATATAAATGACACT 60.094 37.037 0.00 0.00 0.00 3.55
55 56 7.639113 TTTCCCCACAATATAAATGACACTC 57.361 36.000 0.00 0.00 0.00 3.51
56 57 6.320434 TCCCCACAATATAAATGACACTCA 57.680 37.500 0.00 0.00 0.00 3.41
57 58 6.356556 TCCCCACAATATAAATGACACTCAG 58.643 40.000 0.00 0.00 0.00 3.35
58 59 5.532406 CCCCACAATATAAATGACACTCAGG 59.468 44.000 0.00 0.00 0.00 3.86
59 60 5.532406 CCCACAATATAAATGACACTCAGGG 59.468 44.000 0.00 0.00 0.00 4.45
60 61 5.532406 CCACAATATAAATGACACTCAGGGG 59.468 44.000 0.00 0.00 0.00 4.79
61 62 6.122277 CACAATATAAATGACACTCAGGGGT 58.878 40.000 0.00 0.00 0.00 4.95
62 63 6.038603 CACAATATAAATGACACTCAGGGGTG 59.961 42.308 0.00 0.00 42.34 4.61
67 68 4.613143 ACACTCAGGGGTGTACGT 57.387 55.556 2.46 0.00 46.89 3.57
68 69 3.751767 ACACTCAGGGGTGTACGTA 57.248 52.632 2.46 0.00 46.89 3.57
69 70 2.226962 ACACTCAGGGGTGTACGTAT 57.773 50.000 2.46 0.00 46.89 3.06
70 71 1.822990 ACACTCAGGGGTGTACGTATG 59.177 52.381 2.46 0.00 46.89 2.39
71 72 1.822990 CACTCAGGGGTGTACGTATGT 59.177 52.381 0.00 0.00 33.04 2.29
72 73 2.232941 CACTCAGGGGTGTACGTATGTT 59.767 50.000 0.00 0.00 33.04 2.71
73 74 2.232941 ACTCAGGGGTGTACGTATGTTG 59.767 50.000 0.00 0.00 0.00 3.33
74 75 2.232941 CTCAGGGGTGTACGTATGTTGT 59.767 50.000 0.00 0.00 0.00 3.32
75 76 3.429492 TCAGGGGTGTACGTATGTTGTA 58.571 45.455 0.00 0.00 0.00 2.41
76 77 3.444742 TCAGGGGTGTACGTATGTTGTAG 59.555 47.826 0.00 0.00 0.00 2.74
77 78 3.444742 CAGGGGTGTACGTATGTTGTAGA 59.555 47.826 0.00 0.00 0.00 2.59
78 79 4.082081 CAGGGGTGTACGTATGTTGTAGAA 60.082 45.833 0.00 0.00 0.00 2.10
79 80 4.713321 AGGGGTGTACGTATGTTGTAGAAT 59.287 41.667 0.00 0.00 0.00 2.40
80 81 5.893255 AGGGGTGTACGTATGTTGTAGAATA 59.107 40.000 0.00 0.00 0.00 1.75
81 82 5.979517 GGGGTGTACGTATGTTGTAGAATAC 59.020 44.000 0.00 0.00 43.42 1.89
82 83 6.183360 GGGGTGTACGTATGTTGTAGAATACT 60.183 42.308 0.00 0.00 43.54 2.12
83 84 7.260603 GGGTGTACGTATGTTGTAGAATACTT 58.739 38.462 0.00 0.00 43.54 2.24
84 85 7.761249 GGGTGTACGTATGTTGTAGAATACTTT 59.239 37.037 0.00 0.00 43.54 2.66
85 86 9.787532 GGTGTACGTATGTTGTAGAATACTTTA 57.212 33.333 0.00 0.00 43.54 1.85
88 89 7.998753 ACGTATGTTGTAGAATACTTTAGGC 57.001 36.000 0.00 0.00 43.54 3.93
89 90 7.549839 ACGTATGTTGTAGAATACTTTAGGCA 58.450 34.615 0.00 0.00 43.54 4.75
90 91 8.202137 ACGTATGTTGTAGAATACTTTAGGCAT 58.798 33.333 0.00 0.00 43.54 4.40
91 92 8.487970 CGTATGTTGTAGAATACTTTAGGCATG 58.512 37.037 0.00 0.00 43.54 4.06
92 93 6.677781 TGTTGTAGAATACTTTAGGCATGC 57.322 37.500 9.90 9.90 43.54 4.06
93 94 5.293324 TGTTGTAGAATACTTTAGGCATGCG 59.707 40.000 12.44 0.00 43.54 4.73
94 95 5.270893 TGTAGAATACTTTAGGCATGCGA 57.729 39.130 12.44 0.00 43.54 5.10
95 96 5.853936 TGTAGAATACTTTAGGCATGCGAT 58.146 37.500 12.44 5.36 43.54 4.58
96 97 5.696270 TGTAGAATACTTTAGGCATGCGATG 59.304 40.000 12.44 5.28 43.54 3.84
97 98 4.708177 AGAATACTTTAGGCATGCGATGT 58.292 39.130 12.44 10.64 0.00 3.06
98 99 4.512944 AGAATACTTTAGGCATGCGATGTG 59.487 41.667 12.44 4.39 0.00 3.21
99 100 2.113860 ACTTTAGGCATGCGATGTGT 57.886 45.000 12.44 5.05 0.00 3.72
100 101 2.009774 ACTTTAGGCATGCGATGTGTC 58.990 47.619 12.44 0.00 0.00 3.67
114 115 4.514506 CGATGTGTCGCATGTAATTTACC 58.485 43.478 2.97 0.00 41.49 2.85
115 116 4.033472 CGATGTGTCGCATGTAATTTACCA 59.967 41.667 2.97 0.00 41.49 3.25
116 117 5.446607 CGATGTGTCGCATGTAATTTACCAA 60.447 40.000 2.97 0.00 41.49 3.67
117 118 5.690997 TGTGTCGCATGTAATTTACCAAA 57.309 34.783 4.17 0.00 0.00 3.28
118 119 6.073327 TGTGTCGCATGTAATTTACCAAAA 57.927 33.333 4.17 0.00 0.00 2.44
119 120 6.682746 TGTGTCGCATGTAATTTACCAAAAT 58.317 32.000 4.17 0.00 36.87 1.82
120 121 7.817641 TGTGTCGCATGTAATTTACCAAAATA 58.182 30.769 4.17 0.00 34.12 1.40
121 122 8.297426 TGTGTCGCATGTAATTTACCAAAATAA 58.703 29.630 4.17 0.00 34.12 1.40
122 123 9.296400 GTGTCGCATGTAATTTACCAAAATAAT 57.704 29.630 4.17 0.00 34.12 1.28
123 124 9.862371 TGTCGCATGTAATTTACCAAAATAATT 57.138 25.926 4.17 0.00 34.12 1.40
159 160 8.788806 ACTTTCCATATTAGAGATGACTAGACG 58.211 37.037 0.00 0.00 0.00 4.18
160 161 8.693120 TTTCCATATTAGAGATGACTAGACGT 57.307 34.615 0.00 0.00 0.00 4.34
161 162 7.674471 TCCATATTAGAGATGACTAGACGTG 57.326 40.000 0.00 0.00 0.00 4.49
162 163 6.149640 TCCATATTAGAGATGACTAGACGTGC 59.850 42.308 0.00 0.00 0.00 5.34
163 164 6.072452 CCATATTAGAGATGACTAGACGTGCA 60.072 42.308 0.00 0.00 0.00 4.57
164 165 5.836821 ATTAGAGATGACTAGACGTGCAA 57.163 39.130 0.00 0.00 0.00 4.08
165 166 5.638596 TTAGAGATGACTAGACGTGCAAA 57.361 39.130 0.00 0.00 0.00 3.68
166 167 4.727507 AGAGATGACTAGACGTGCAAAT 57.272 40.909 0.00 0.00 0.00 2.32
167 168 5.836821 AGAGATGACTAGACGTGCAAATA 57.163 39.130 0.00 0.00 0.00 1.40
168 169 6.398234 AGAGATGACTAGACGTGCAAATAT 57.602 37.500 0.00 0.00 0.00 1.28
169 170 6.810911 AGAGATGACTAGACGTGCAAATATT 58.189 36.000 0.00 0.00 0.00 1.28
170 171 7.941919 AGAGATGACTAGACGTGCAAATATTA 58.058 34.615 0.00 0.00 0.00 0.98
171 172 7.863375 AGAGATGACTAGACGTGCAAATATTAC 59.137 37.037 0.00 0.00 0.00 1.89
172 173 7.489160 AGATGACTAGACGTGCAAATATTACA 58.511 34.615 0.00 0.00 0.00 2.41
173 174 7.649705 AGATGACTAGACGTGCAAATATTACAG 59.350 37.037 0.00 0.00 0.00 2.74
174 175 6.627243 TGACTAGACGTGCAAATATTACAGT 58.373 36.000 0.00 0.00 0.00 3.55
175 176 6.530181 TGACTAGACGTGCAAATATTACAGTG 59.470 38.462 0.00 0.00 0.00 3.66
176 177 6.627243 ACTAGACGTGCAAATATTACAGTGA 58.373 36.000 0.00 0.00 0.00 3.41
177 178 7.265673 ACTAGACGTGCAAATATTACAGTGAT 58.734 34.615 0.00 0.00 0.00 3.06
178 179 6.349973 AGACGTGCAAATATTACAGTGATG 57.650 37.500 0.00 0.00 0.00 3.07
179 180 4.908736 ACGTGCAAATATTACAGTGATGC 58.091 39.130 0.00 0.12 0.00 3.91
180 181 3.961860 CGTGCAAATATTACAGTGATGCG 59.038 43.478 0.00 0.00 35.18 4.73
181 182 3.725740 GTGCAAATATTACAGTGATGCGC 59.274 43.478 0.00 0.00 35.18 6.09
182 183 2.966708 GCAAATATTACAGTGATGCGCG 59.033 45.455 0.00 0.00 0.00 6.86
183 184 3.546020 GCAAATATTACAGTGATGCGCGT 60.546 43.478 8.43 0.00 0.00 6.01
184 185 4.318475 GCAAATATTACAGTGATGCGCGTA 60.318 41.667 8.43 2.40 0.00 4.42
185 186 4.966850 AATATTACAGTGATGCGCGTAC 57.033 40.909 8.43 0.44 0.00 3.67
186 187 2.287393 ATTACAGTGATGCGCGTACA 57.713 45.000 8.43 0.00 0.00 2.90
187 188 1.342555 TTACAGTGATGCGCGTACAC 58.657 50.000 18.75 18.75 35.15 2.90
188 189 0.795358 TACAGTGATGCGCGTACACG 60.795 55.000 19.70 17.17 39.19 4.49
203 204 5.152923 CGTACACGCTATACAAGAAGAGA 57.847 43.478 0.00 0.00 0.00 3.10
204 205 5.566623 CGTACACGCTATACAAGAAGAGAA 58.433 41.667 0.00 0.00 0.00 2.87
205 206 6.025896 CGTACACGCTATACAAGAAGAGAAA 58.974 40.000 0.00 0.00 0.00 2.52
206 207 6.691818 CGTACACGCTATACAAGAAGAGAAAT 59.308 38.462 0.00 0.00 0.00 2.17
207 208 7.854422 CGTACACGCTATACAAGAAGAGAAATA 59.146 37.037 0.00 0.00 0.00 1.40
208 209 9.680315 GTACACGCTATACAAGAAGAGAAATAT 57.320 33.333 0.00 0.00 0.00 1.28
210 211 9.035607 ACACGCTATACAAGAAGAGAAATATTG 57.964 33.333 0.00 0.00 0.00 1.90
211 212 9.035607 CACGCTATACAAGAAGAGAAATATTGT 57.964 33.333 0.00 0.00 37.77 2.71
218 219 8.565896 ACAAGAAGAGAAATATTGTATGCACA 57.434 30.769 0.00 0.00 32.58 4.57
219 220 9.182214 ACAAGAAGAGAAATATTGTATGCACAT 57.818 29.630 0.00 0.00 33.76 3.21
220 221 9.661187 CAAGAAGAGAAATATTGTATGCACATC 57.339 33.333 0.00 0.00 33.76 3.06
221 222 8.969260 AGAAGAGAAATATTGTATGCACATCA 57.031 30.769 0.00 0.00 33.76 3.07
222 223 9.399797 AGAAGAGAAATATTGTATGCACATCAA 57.600 29.630 0.00 0.00 33.76 2.57
223 224 9.443283 GAAGAGAAATATTGTATGCACATCAAC 57.557 33.333 0.00 0.00 33.76 3.18
224 225 8.510243 AGAGAAATATTGTATGCACATCAACA 57.490 30.769 0.00 0.00 33.76 3.33
225 226 8.959548 AGAGAAATATTGTATGCACATCAACAA 58.040 29.630 0.00 2.39 36.37 2.83
226 227 9.229784 GAGAAATATTGTATGCACATCAACAAG 57.770 33.333 0.00 0.00 35.48 3.16
227 228 8.959548 AGAAATATTGTATGCACATCAACAAGA 58.040 29.630 0.00 1.95 35.48 3.02
228 229 9.740239 GAAATATTGTATGCACATCAACAAGAT 57.260 29.630 0.00 3.82 35.82 2.40
231 232 7.870509 ATTGTATGCACATCAACAAGATAGT 57.129 32.000 0.00 0.00 35.48 2.12
232 233 8.962884 ATTGTATGCACATCAACAAGATAGTA 57.037 30.769 0.00 0.00 35.48 1.82
233 234 7.770801 TGTATGCACATCAACAAGATAGTAC 57.229 36.000 0.00 0.00 34.43 2.73
234 235 7.555965 TGTATGCACATCAACAAGATAGTACT 58.444 34.615 0.00 0.00 34.43 2.73
235 236 8.040727 TGTATGCACATCAACAAGATAGTACTT 58.959 33.333 0.00 0.00 34.43 2.24
236 237 9.529325 GTATGCACATCAACAAGATAGTACTTA 57.471 33.333 0.00 0.00 34.43 2.24
237 238 8.654230 ATGCACATCAACAAGATAGTACTTAG 57.346 34.615 0.00 0.00 34.43 2.18
238 239 7.836842 TGCACATCAACAAGATAGTACTTAGA 58.163 34.615 0.00 0.00 34.43 2.10
239 240 7.976175 TGCACATCAACAAGATAGTACTTAGAG 59.024 37.037 0.00 0.00 34.43 2.43
240 241 7.043059 GCACATCAACAAGATAGTACTTAGAGC 60.043 40.741 0.00 0.00 34.43 4.09
241 242 7.976175 CACATCAACAAGATAGTACTTAGAGCA 59.024 37.037 0.00 0.00 34.43 4.26
242 243 8.194104 ACATCAACAAGATAGTACTTAGAGCAG 58.806 37.037 0.00 0.00 34.43 4.24
243 244 7.939784 TCAACAAGATAGTACTTAGAGCAGA 57.060 36.000 0.00 0.00 0.00 4.26
244 245 8.349568 TCAACAAGATAGTACTTAGAGCAGAA 57.650 34.615 0.00 0.00 0.00 3.02
245 246 8.462811 TCAACAAGATAGTACTTAGAGCAGAAG 58.537 37.037 0.00 0.00 0.00 2.85
246 247 8.462811 CAACAAGATAGTACTTAGAGCAGAAGA 58.537 37.037 0.00 0.00 0.00 2.87
247 248 8.582657 ACAAGATAGTACTTAGAGCAGAAGAA 57.417 34.615 0.00 0.00 0.00 2.52
248 249 9.026121 ACAAGATAGTACTTAGAGCAGAAGAAA 57.974 33.333 0.00 0.00 0.00 2.52
249 250 9.296400 CAAGATAGTACTTAGAGCAGAAGAAAC 57.704 37.037 0.00 0.00 0.00 2.78
250 251 8.582657 AGATAGTACTTAGAGCAGAAGAAACA 57.417 34.615 0.00 0.00 0.00 2.83
251 252 9.026121 AGATAGTACTTAGAGCAGAAGAAACAA 57.974 33.333 0.00 0.00 0.00 2.83
252 253 9.640963 GATAGTACTTAGAGCAGAAGAAACAAA 57.359 33.333 0.00 0.00 0.00 2.83
255 256 9.998106 AGTACTTAGAGCAGAAGAAACAAATAA 57.002 29.630 0.00 0.00 0.00 1.40
257 258 8.329203 ACTTAGAGCAGAAGAAACAAATAAGG 57.671 34.615 0.00 0.00 0.00 2.69
258 259 7.391833 ACTTAGAGCAGAAGAAACAAATAAGGG 59.608 37.037 0.00 0.00 0.00 3.95
259 260 5.880901 AGAGCAGAAGAAACAAATAAGGGA 58.119 37.500 0.00 0.00 0.00 4.20
260 261 6.306987 AGAGCAGAAGAAACAAATAAGGGAA 58.693 36.000 0.00 0.00 0.00 3.97
261 262 6.777580 AGAGCAGAAGAAACAAATAAGGGAAA 59.222 34.615 0.00 0.00 0.00 3.13
262 263 6.749139 AGCAGAAGAAACAAATAAGGGAAAC 58.251 36.000 0.00 0.00 0.00 2.78
263 264 6.323739 AGCAGAAGAAACAAATAAGGGAAACA 59.676 34.615 0.00 0.00 0.00 2.83
264 265 7.015584 AGCAGAAGAAACAAATAAGGGAAACAT 59.984 33.333 0.00 0.00 0.00 2.71
265 266 7.657354 GCAGAAGAAACAAATAAGGGAAACATT 59.343 33.333 0.00 0.00 38.33 2.71
266 267 9.546428 CAGAAGAAACAAATAAGGGAAACATTT 57.454 29.630 0.00 0.00 35.09 2.32
267 268 9.546428 AGAAGAAACAAATAAGGGAAACATTTG 57.454 29.630 5.06 5.06 42.61 2.32
274 275 9.981114 ACAAATAAGGGAAACATTTGTTAAGAG 57.019 29.630 6.18 0.00 45.78 2.85
325 326 3.641648 ACGATTCCACGACGTTAAAGAA 58.358 40.909 0.00 0.00 36.91 2.52
326 327 4.050553 ACGATTCCACGACGTTAAAGAAA 58.949 39.130 0.00 0.00 36.91 2.52
327 328 4.687483 ACGATTCCACGACGTTAAAGAAAT 59.313 37.500 0.00 0.00 36.91 2.17
332 333 7.655236 TTCCACGACGTTAAAGAAATATCAA 57.345 32.000 0.00 0.00 0.00 2.57
333 334 7.285783 TCCACGACGTTAAAGAAATATCAAG 57.714 36.000 0.00 0.00 0.00 3.02
334 335 5.957796 CCACGACGTTAAAGAAATATCAAGC 59.042 40.000 0.00 0.00 0.00 4.01
338 339 5.880341 ACGTTAAAGAAATATCAAGCAGGC 58.120 37.500 0.00 0.00 0.00 4.85
340 341 6.095440 ACGTTAAAGAAATATCAAGCAGGCAT 59.905 34.615 0.00 0.00 0.00 4.40
354 355 6.550481 TCAAGCAGGCATATAAATCAAATCCA 59.450 34.615 0.00 0.00 0.00 3.41
355 356 7.233962 TCAAGCAGGCATATAAATCAAATCCAT 59.766 33.333 0.00 0.00 0.00 3.41
356 357 8.525316 CAAGCAGGCATATAAATCAAATCCATA 58.475 33.333 0.00 0.00 0.00 2.74
390 391 9.155053 GACTATAAATTGTTAAGATTTTCCGCG 57.845 33.333 0.00 0.00 0.00 6.46
400 401 5.659048 AAGATTTTCCGCGACATATTCTC 57.341 39.130 8.23 0.00 0.00 2.87
475 480 2.629617 CAAAAGGTTCAGCAAGACCCAT 59.370 45.455 0.00 0.00 29.56 4.00
484 489 3.580895 TCAGCAAGACCCATAACTACACA 59.419 43.478 0.00 0.00 0.00 3.72
573 612 3.349006 GAGCGGGCACACACACAG 61.349 66.667 0.00 0.00 0.00 3.66
668 713 2.175184 AAAGACACGCATCGCTGTGC 62.175 55.000 0.00 0.00 41.65 4.57
674 719 2.477845 GCATCGCTGTGCTGTGTC 59.522 61.111 3.25 0.00 41.82 3.67
722 767 4.935495 ACACCGTGTGGCTGCCTG 62.935 66.667 21.03 10.95 39.70 4.85
824 892 2.759795 AGCTCCCACCCAAGCTTC 59.240 61.111 0.00 0.00 46.49 3.86
845 913 2.154462 CACTTCACCTCCACCACAATC 58.846 52.381 0.00 0.00 0.00 2.67
853 921 4.101790 CACCACAATCCGCACGGC 62.102 66.667 3.66 0.00 34.68 5.68
934 1002 0.107945 AGCAATCCTCGCTTCCTGTC 60.108 55.000 0.00 0.00 35.82 3.51
944 1012 1.674221 CGCTTCCTGTCCCTTCTTCTG 60.674 57.143 0.00 0.00 0.00 3.02
979 1047 1.467734 GTGAAGTAGAAGTCGAGCCGA 59.532 52.381 0.00 0.00 0.00 5.54
1034 1113 5.591099 GTCTCTTCAATCCAAAGCAAAACA 58.409 37.500 0.00 0.00 0.00 2.83
1035 1114 6.042143 GTCTCTTCAATCCAAAGCAAAACAA 58.958 36.000 0.00 0.00 0.00 2.83
1036 1115 6.534793 GTCTCTTCAATCCAAAGCAAAACAAA 59.465 34.615 0.00 0.00 0.00 2.83
1037 1116 6.757947 TCTCTTCAATCCAAAGCAAAACAAAG 59.242 34.615 0.00 0.00 0.00 2.77
1038 1117 6.638610 TCTTCAATCCAAAGCAAAACAAAGA 58.361 32.000 0.00 0.00 0.00 2.52
1039 1118 6.757947 TCTTCAATCCAAAGCAAAACAAAGAG 59.242 34.615 0.00 0.00 0.00 2.85
1089 1168 3.798202 ACATCGATCTCCCAAGCTAAAC 58.202 45.455 0.00 0.00 0.00 2.01
1095 1174 2.500229 TCTCCCAAGCTAAACAAACCG 58.500 47.619 0.00 0.00 0.00 4.44
1096 1175 0.955905 TCCCAAGCTAAACAAACCGC 59.044 50.000 0.00 0.00 0.00 5.68
1164 1243 2.457366 ACCAAGCACCGAGAAACTAG 57.543 50.000 0.00 0.00 0.00 2.57
1191 1270 0.326143 AGGAGGAGGAGGAAGAAGCC 60.326 60.000 0.00 0.00 0.00 4.35
1215 1294 4.767409 TCTCCATAGAATCAACCGATCGAT 59.233 41.667 18.66 0.00 0.00 3.59
1235 1314 1.076705 GGGGGTCTTGATCTTGGCC 60.077 63.158 0.00 0.00 0.00 5.36
1260 1339 1.218230 GAATGCGGCAGATCTCGTCC 61.218 60.000 9.25 1.21 0.00 4.79
1514 1603 4.233789 TGTGAATGAATTTTTACGCTGGC 58.766 39.130 0.00 0.00 0.00 4.85
1527 1616 2.826428 ACGCTGGCTATCACAACATAG 58.174 47.619 0.00 0.00 0.00 2.23
1558 1647 2.346847 CGTGTAGCAGTCAAAGATCAGC 59.653 50.000 0.00 0.00 0.00 4.26
1560 1649 3.937706 GTGTAGCAGTCAAAGATCAGCAT 59.062 43.478 0.00 0.00 0.00 3.79
1561 1650 4.033817 GTGTAGCAGTCAAAGATCAGCATC 59.966 45.833 0.00 0.00 0.00 3.91
1615 1704 2.164827 ACAATTTAATTCCCGCGTTCCC 59.835 45.455 4.92 0.00 0.00 3.97
1635 1724 5.626142 TCCCAACACAAATTTCTGCTACTA 58.374 37.500 0.00 0.00 0.00 1.82
1657 1751 7.126733 ACTAGAGAGGCAGAAGAGGTTAATTA 58.873 38.462 0.00 0.00 0.00 1.40
1760 1858 4.248859 CGGCTTCTTCTTCTCATTTCTGA 58.751 43.478 0.00 0.00 0.00 3.27
1793 1891 9.852091 AAGAAATAAATCAGTTTTCATCTGCTC 57.148 29.630 0.00 0.00 32.94 4.26
1892 1996 6.966534 ATTTTTGTGAGATGGTTCAGTTCT 57.033 33.333 0.00 0.00 0.00 3.01
1910 2014 5.299279 CAGTTCTGTTTTGTGGTGGTATTCT 59.701 40.000 0.00 0.00 0.00 2.40
1915 2019 4.512198 TGTTTTGTGGTGGTATTCTGTACG 59.488 41.667 0.00 0.00 0.00 3.67
1919 2023 0.828677 GGTGGTATTCTGTACGGCCT 59.171 55.000 0.00 0.00 0.00 5.19
1961 2065 2.561478 ACCAGATTACGTGTTGCCTT 57.439 45.000 0.00 0.00 0.00 4.35
2094 3390 1.200948 GTGTCTTGATTTGCTGGAGCC 59.799 52.381 0.00 0.00 41.18 4.70
2096 3392 1.200948 GTCTTGATTTGCTGGAGCCAC 59.799 52.381 0.00 0.00 41.18 5.01
2100 3396 2.037901 TGATTTGCTGGAGCCACAAAA 58.962 42.857 15.82 7.47 41.18 2.44
2102 3398 0.752054 TTTGCTGGAGCCACAAAAGG 59.248 50.000 11.94 0.00 41.18 3.11
2103 3399 0.396974 TTGCTGGAGCCACAAAAGGT 60.397 50.000 0.00 0.00 41.18 3.50
2105 3401 1.109323 GCTGGAGCCACAAAAGGTGT 61.109 55.000 0.00 0.00 46.44 4.16
2106 3402 1.402787 CTGGAGCCACAAAAGGTGTT 58.597 50.000 0.00 0.00 46.44 3.32
2107 3403 1.067516 CTGGAGCCACAAAAGGTGTTG 59.932 52.381 0.00 0.00 46.44 3.33
2108 3404 0.389025 GGAGCCACAAAAGGTGTTGG 59.611 55.000 0.00 0.00 46.44 3.77
2109 3405 0.389025 GAGCCACAAAAGGTGTTGGG 59.611 55.000 0.00 0.00 46.44 4.12
2110 3406 0.325203 AGCCACAAAAGGTGTTGGGT 60.325 50.000 0.00 0.00 46.44 4.51
2111 3407 0.539518 GCCACAAAAGGTGTTGGGTT 59.460 50.000 0.00 0.00 46.44 4.11
2112 3408 1.065782 GCCACAAAAGGTGTTGGGTTT 60.066 47.619 0.00 0.00 46.44 3.27
2113 3409 2.626840 CCACAAAAGGTGTTGGGTTTG 58.373 47.619 0.00 0.00 46.44 2.93
2114 3410 2.027653 CCACAAAAGGTGTTGGGTTTGT 60.028 45.455 0.00 0.00 46.44 2.83
2115 3411 3.558109 CCACAAAAGGTGTTGGGTTTGTT 60.558 43.478 0.00 0.00 46.44 2.83
2147 3443 7.308435 GTTTCTTGGTATCTGAATCCAAAGTG 58.692 38.462 14.53 6.86 40.11 3.16
2192 3736 2.473816 ACATACTGATTGCGATGGTCG 58.526 47.619 0.00 0.00 43.89 4.79
2260 3812 9.943163 AAATTTGCAAAACATGTAATTAACCAC 57.057 25.926 17.19 0.00 33.42 4.16
2311 3863 5.514279 AGTTATCGGGTTAGAAATACGTCG 58.486 41.667 0.00 0.00 0.00 5.12
2316 3868 3.303329 CGGGTTAGAAATACGTCGATCGA 60.303 47.826 15.15 15.15 42.86 3.59
2353 3905 5.352569 CACTCCCTTAAACTGCACTAGATTG 59.647 44.000 0.00 0.00 0.00 2.67
2363 3915 3.935203 CTGCACTAGATTGGAAACACGAT 59.065 43.478 0.00 0.00 42.67 3.73
2376 3928 7.591006 TGGAAACACGATCTAATTTGACTAC 57.409 36.000 0.00 0.00 33.40 2.73
2420 4011 2.416547 CGATGACCTACCTGCACAAAAG 59.583 50.000 0.00 0.00 0.00 2.27
2426 4018 2.346284 TACCTGCACAAAAGGGCCGT 62.346 55.000 0.00 0.00 39.30 5.68
2467 4061 2.454336 TCTATCATGTCACTCCCCGT 57.546 50.000 0.00 0.00 0.00 5.28
2472 4066 3.048337 TCATGTCACTCCCCGTAAAAC 57.952 47.619 0.00 0.00 0.00 2.43
2534 4128 4.333913 TTGCCATGCACAGTAAATTTGT 57.666 36.364 0.00 0.00 38.71 2.83
2542 4136 5.073428 TGCACAGTAAATTTGTACCCATCA 58.927 37.500 0.00 0.00 0.00 3.07
2622 4225 4.620184 CGTTTCTTCTCGATTTCTTACGGT 59.380 41.667 0.00 0.00 0.00 4.83
3109 4759 4.649692 ACAAGACTAGAAGACGGACAGTA 58.350 43.478 0.00 0.00 0.00 2.74
3118 4768 3.594603 AGACGGACAGTACATTCTTGG 57.405 47.619 0.00 0.00 0.00 3.61
3177 4828 1.300931 GGAGAAGGCGCGCATCATA 60.301 57.895 34.42 0.00 0.00 2.15
3421 5084 6.539649 TGCACAGTCACAAAGTATTTCTAC 57.460 37.500 0.00 0.00 35.03 2.59
3631 5295 0.980423 GGTCTGCCTCTTCTTCCACT 59.020 55.000 0.00 0.00 0.00 4.00
3678 5349 3.050166 GACCGCGATTGCATTGCCA 62.050 57.895 8.23 0.00 42.97 4.92
3737 5408 4.956537 CGATCGATCGGTGCGCGA 62.957 66.667 34.54 0.00 45.93 5.87
3931 5611 1.334149 GCAGAAGAAACAAGACGCACC 60.334 52.381 0.00 0.00 0.00 5.01
3949 5629 3.119955 GCACCTTGTCCTTATTTTCGTCC 60.120 47.826 0.00 0.00 0.00 4.79
3951 5631 4.392138 CACCTTGTCCTTATTTTCGTCCTC 59.608 45.833 0.00 0.00 0.00 3.71
3978 5661 0.597568 CTCGTTGGCCTGAAAATGCA 59.402 50.000 3.32 0.00 0.00 3.96
3990 5673 5.181009 CCTGAAAATGCACTATGAGAGACA 58.819 41.667 0.00 0.00 0.00 3.41
3991 5674 5.293814 CCTGAAAATGCACTATGAGAGACAG 59.706 44.000 0.00 0.00 0.00 3.51
3999 5682 6.986250 TGCACTATGAGAGACAGTAATATGG 58.014 40.000 0.00 0.00 0.00 2.74
4036 5730 3.923461 ACAAAACGTCACAATTGTTGGTG 59.077 39.130 8.77 1.91 32.37 4.17
4048 5742 7.039853 TCACAATTGTTGGTGTACATCAATGAT 60.040 33.333 23.72 16.92 44.60 2.45
4087 5781 3.181465 ACACCAGTCACTACAGGAAACAG 60.181 47.826 0.00 0.00 35.86 3.16
4175 5869 3.041940 CGCGGACGGCAAAAGACT 61.042 61.111 0.00 0.00 43.84 3.24
4176 5870 2.861006 GCGGACGGCAAAAGACTC 59.139 61.111 0.00 0.00 42.87 3.36
4177 5871 2.677979 GCGGACGGCAAAAGACTCC 61.678 63.158 0.00 0.00 42.87 3.85
4393 6117 0.451783 CAGGTTCTTTGCCGTATGCC 59.548 55.000 0.00 0.00 40.16 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.750780 GCAGCAGAAACCTAGCCCC 60.751 63.158 0.00 0.00 0.00 5.80
21 22 2.597217 TGGGGAAAACCAGCGCAG 60.597 61.111 11.47 0.00 42.91 5.18
22 23 2.909965 GTGGGGAAAACCAGCGCA 60.910 61.111 11.47 0.00 42.20 6.09
23 24 1.815817 ATTGTGGGGAAAACCAGCGC 61.816 55.000 0.00 0.00 42.20 5.92
24 25 1.540267 TATTGTGGGGAAAACCAGCG 58.460 50.000 0.00 0.00 42.20 5.18
25 26 5.669164 TTTATATTGTGGGGAAAACCAGC 57.331 39.130 0.00 0.00 42.20 4.85
26 27 7.093552 TGTCATTTATATTGTGGGGAAAACCAG 60.094 37.037 0.00 0.00 42.20 4.00
27 28 6.726299 TGTCATTTATATTGTGGGGAAAACCA 59.274 34.615 0.00 0.00 42.91 3.67
28 29 7.039270 GTGTCATTTATATTGTGGGGAAAACC 58.961 38.462 0.00 0.00 39.11 3.27
29 30 7.836842 AGTGTCATTTATATTGTGGGGAAAAC 58.163 34.615 0.00 0.00 0.00 2.43
30 31 7.671819 TGAGTGTCATTTATATTGTGGGGAAAA 59.328 33.333 0.00 0.00 0.00 2.29
31 32 7.178573 TGAGTGTCATTTATATTGTGGGGAAA 58.821 34.615 0.00 0.00 0.00 3.13
32 33 6.726379 TGAGTGTCATTTATATTGTGGGGAA 58.274 36.000 0.00 0.00 0.00 3.97
33 34 6.320434 TGAGTGTCATTTATATTGTGGGGA 57.680 37.500 0.00 0.00 0.00 4.81
34 35 5.532406 CCTGAGTGTCATTTATATTGTGGGG 59.468 44.000 0.00 0.00 0.00 4.96
35 36 5.532406 CCCTGAGTGTCATTTATATTGTGGG 59.468 44.000 0.00 0.00 0.00 4.61
36 37 5.532406 CCCCTGAGTGTCATTTATATTGTGG 59.468 44.000 0.00 0.00 0.00 4.17
37 38 6.038603 CACCCCTGAGTGTCATTTATATTGTG 59.961 42.308 0.00 0.00 32.89 3.33
38 39 6.122277 CACCCCTGAGTGTCATTTATATTGT 58.878 40.000 0.00 0.00 32.89 2.71
39 40 6.624352 CACCCCTGAGTGTCATTTATATTG 57.376 41.667 0.00 0.00 32.89 1.90
51 52 1.822990 ACATACGTACACCCCTGAGTG 59.177 52.381 0.00 0.00 43.65 3.51
52 53 2.226962 ACATACGTACACCCCTGAGT 57.773 50.000 0.00 0.00 0.00 3.41
53 54 2.232941 ACAACATACGTACACCCCTGAG 59.767 50.000 0.00 0.00 0.00 3.35
54 55 2.250031 ACAACATACGTACACCCCTGA 58.750 47.619 0.00 0.00 0.00 3.86
55 56 2.754946 ACAACATACGTACACCCCTG 57.245 50.000 0.00 0.00 0.00 4.45
56 57 3.700538 TCTACAACATACGTACACCCCT 58.299 45.455 0.00 0.00 0.00 4.79
57 58 4.454728 TTCTACAACATACGTACACCCC 57.545 45.455 0.00 0.00 0.00 4.95
58 59 6.799512 AGTATTCTACAACATACGTACACCC 58.200 40.000 0.00 0.00 32.05 4.61
59 60 8.693542 AAAGTATTCTACAACATACGTACACC 57.306 34.615 0.00 0.00 32.05 4.16
62 63 8.962111 GCCTAAAGTATTCTACAACATACGTAC 58.038 37.037 0.00 0.00 32.05 3.67
63 64 8.685427 TGCCTAAAGTATTCTACAACATACGTA 58.315 33.333 0.00 0.00 32.05 3.57
64 65 7.549839 TGCCTAAAGTATTCTACAACATACGT 58.450 34.615 0.00 0.00 32.05 3.57
65 66 7.997107 TGCCTAAAGTATTCTACAACATACG 57.003 36.000 0.00 0.00 32.05 3.06
66 67 8.283291 GCATGCCTAAAGTATTCTACAACATAC 58.717 37.037 6.36 0.00 0.00 2.39
67 68 7.170828 CGCATGCCTAAAGTATTCTACAACATA 59.829 37.037 13.15 0.00 0.00 2.29
68 69 6.017934 CGCATGCCTAAAGTATTCTACAACAT 60.018 38.462 13.15 0.00 0.00 2.71
69 70 5.293324 CGCATGCCTAAAGTATTCTACAACA 59.707 40.000 13.15 0.00 0.00 3.33
70 71 5.522460 TCGCATGCCTAAAGTATTCTACAAC 59.478 40.000 13.15 0.00 0.00 3.32
71 72 5.666462 TCGCATGCCTAAAGTATTCTACAA 58.334 37.500 13.15 0.00 0.00 2.41
72 73 5.270893 TCGCATGCCTAAAGTATTCTACA 57.729 39.130 13.15 0.00 0.00 2.74
73 74 5.696724 ACATCGCATGCCTAAAGTATTCTAC 59.303 40.000 13.15 0.00 0.00 2.59
74 75 5.696270 CACATCGCATGCCTAAAGTATTCTA 59.304 40.000 13.15 0.00 0.00 2.10
75 76 4.512944 CACATCGCATGCCTAAAGTATTCT 59.487 41.667 13.15 0.00 0.00 2.40
76 77 4.273480 ACACATCGCATGCCTAAAGTATTC 59.727 41.667 13.15 0.00 0.00 1.75
77 78 4.199310 ACACATCGCATGCCTAAAGTATT 58.801 39.130 13.15 0.00 0.00 1.89
78 79 3.808728 ACACATCGCATGCCTAAAGTAT 58.191 40.909 13.15 0.00 0.00 2.12
79 80 3.194861 GACACATCGCATGCCTAAAGTA 58.805 45.455 13.15 0.00 0.00 2.24
80 81 2.009774 GACACATCGCATGCCTAAAGT 58.990 47.619 13.15 5.75 0.00 2.66
81 82 1.004610 CGACACATCGCATGCCTAAAG 60.005 52.381 13.15 2.19 42.43 1.85
82 83 1.006086 CGACACATCGCATGCCTAAA 58.994 50.000 13.15 0.00 42.43 1.85
83 84 2.676744 CGACACATCGCATGCCTAA 58.323 52.632 13.15 0.00 42.43 2.69
84 85 4.418337 CGACACATCGCATGCCTA 57.582 55.556 13.15 0.07 42.43 3.93
93 94 5.478233 TGGTAAATTACATGCGACACATC 57.522 39.130 5.45 0.00 36.64 3.06
94 95 5.888691 TTGGTAAATTACATGCGACACAT 57.111 34.783 5.45 0.00 40.66 3.21
95 96 5.690997 TTTGGTAAATTACATGCGACACA 57.309 34.783 5.45 0.00 0.00 3.72
96 97 8.676454 TTATTTTGGTAAATTACATGCGACAC 57.324 30.769 5.45 0.00 35.61 3.67
97 98 9.862371 AATTATTTTGGTAAATTACATGCGACA 57.138 25.926 5.45 0.00 35.61 4.35
133 134 8.788806 CGTCTAGTCATCTCTAATATGGAAAGT 58.211 37.037 0.00 0.00 0.00 2.66
134 135 8.788806 ACGTCTAGTCATCTCTAATATGGAAAG 58.211 37.037 0.00 0.00 0.00 2.62
135 136 8.568794 CACGTCTAGTCATCTCTAATATGGAAA 58.431 37.037 0.00 0.00 0.00 3.13
136 137 7.308649 GCACGTCTAGTCATCTCTAATATGGAA 60.309 40.741 0.00 0.00 0.00 3.53
137 138 6.149640 GCACGTCTAGTCATCTCTAATATGGA 59.850 42.308 0.00 0.00 0.00 3.41
138 139 6.072452 TGCACGTCTAGTCATCTCTAATATGG 60.072 42.308 0.00 0.00 0.00 2.74
139 140 6.903419 TGCACGTCTAGTCATCTCTAATATG 58.097 40.000 0.00 0.00 0.00 1.78
140 141 7.511959 TTGCACGTCTAGTCATCTCTAATAT 57.488 36.000 0.00 0.00 0.00 1.28
141 142 6.937436 TTGCACGTCTAGTCATCTCTAATA 57.063 37.500 0.00 0.00 0.00 0.98
142 143 5.836821 TTGCACGTCTAGTCATCTCTAAT 57.163 39.130 0.00 0.00 0.00 1.73
143 144 5.638596 TTTGCACGTCTAGTCATCTCTAA 57.361 39.130 0.00 0.00 0.00 2.10
144 145 5.836821 ATTTGCACGTCTAGTCATCTCTA 57.163 39.130 0.00 0.00 0.00 2.43
145 146 4.727507 ATTTGCACGTCTAGTCATCTCT 57.272 40.909 0.00 0.00 0.00 3.10
146 147 7.648112 TGTAATATTTGCACGTCTAGTCATCTC 59.352 37.037 0.00 0.00 0.00 2.75
147 148 7.489160 TGTAATATTTGCACGTCTAGTCATCT 58.511 34.615 0.00 0.00 0.00 2.90
148 149 7.435488 ACTGTAATATTTGCACGTCTAGTCATC 59.565 37.037 0.00 0.00 0.00 2.92
149 150 7.222805 CACTGTAATATTTGCACGTCTAGTCAT 59.777 37.037 0.00 0.00 0.00 3.06
150 151 6.530181 CACTGTAATATTTGCACGTCTAGTCA 59.470 38.462 0.00 0.00 0.00 3.41
151 152 6.750501 TCACTGTAATATTTGCACGTCTAGTC 59.249 38.462 0.00 0.00 0.00 2.59
152 153 6.627243 TCACTGTAATATTTGCACGTCTAGT 58.373 36.000 0.00 0.00 0.00 2.57
153 154 7.558991 CATCACTGTAATATTTGCACGTCTAG 58.441 38.462 0.00 0.00 0.00 2.43
154 155 6.019075 GCATCACTGTAATATTTGCACGTCTA 60.019 38.462 0.00 0.00 0.00 2.59
155 156 5.220662 GCATCACTGTAATATTTGCACGTCT 60.221 40.000 0.00 0.00 0.00 4.18
156 157 4.963953 GCATCACTGTAATATTTGCACGTC 59.036 41.667 0.00 0.00 0.00 4.34
157 158 4.494035 CGCATCACTGTAATATTTGCACGT 60.494 41.667 6.79 0.00 0.00 4.49
158 159 3.961860 CGCATCACTGTAATATTTGCACG 59.038 43.478 6.79 0.00 0.00 5.34
159 160 3.725740 GCGCATCACTGTAATATTTGCAC 59.274 43.478 0.30 0.00 0.00 4.57
160 161 3.545822 CGCGCATCACTGTAATATTTGCA 60.546 43.478 8.75 0.00 0.00 4.08
161 162 2.966708 CGCGCATCACTGTAATATTTGC 59.033 45.455 8.75 0.00 0.00 3.68
162 163 4.195744 ACGCGCATCACTGTAATATTTG 57.804 40.909 5.73 0.00 0.00 2.32
163 164 4.806775 TGTACGCGCATCACTGTAATATTT 59.193 37.500 5.73 0.00 0.00 1.40
164 165 4.208460 GTGTACGCGCATCACTGTAATATT 59.792 41.667 5.73 0.00 0.00 1.28
165 166 3.734231 GTGTACGCGCATCACTGTAATAT 59.266 43.478 5.73 0.00 0.00 1.28
166 167 3.110358 GTGTACGCGCATCACTGTAATA 58.890 45.455 5.73 0.00 0.00 0.98
167 168 1.924524 GTGTACGCGCATCACTGTAAT 59.075 47.619 5.73 0.00 0.00 1.89
168 169 1.342555 GTGTACGCGCATCACTGTAA 58.657 50.000 5.73 0.00 0.00 2.41
169 170 0.795358 CGTGTACGCGCATCACTGTA 60.795 55.000 16.78 0.00 0.00 2.74
170 171 2.086426 CGTGTACGCGCATCACTGT 61.086 57.895 16.78 0.00 0.00 3.55
171 172 2.689183 CGTGTACGCGCATCACTG 59.311 61.111 16.78 13.17 0.00 3.66
181 182 5.152923 TCTCTTCTTGTATAGCGTGTACG 57.847 43.478 0.00 0.00 43.27 3.67
182 183 7.988904 ATTTCTCTTCTTGTATAGCGTGTAC 57.011 36.000 0.00 0.00 0.00 2.90
184 185 9.035607 CAATATTTCTCTTCTTGTATAGCGTGT 57.964 33.333 0.00 0.00 0.00 4.49
185 186 9.035607 ACAATATTTCTCTTCTTGTATAGCGTG 57.964 33.333 0.00 0.00 0.00 5.34
192 193 9.665719 TGTGCATACAATATTTCTCTTCTTGTA 57.334 29.630 0.00 0.00 36.89 2.41
193 194 8.565896 TGTGCATACAATATTTCTCTTCTTGT 57.434 30.769 0.00 0.00 32.88 3.16
194 195 9.661187 GATGTGCATACAATATTTCTCTTCTTG 57.339 33.333 0.00 0.00 40.84 3.02
195 196 9.399797 TGATGTGCATACAATATTTCTCTTCTT 57.600 29.630 0.00 0.00 40.84 2.52
196 197 8.969260 TGATGTGCATACAATATTTCTCTTCT 57.031 30.769 0.00 0.00 40.84 2.85
197 198 9.443283 GTTGATGTGCATACAATATTTCTCTTC 57.557 33.333 0.00 0.00 40.84 2.87
198 199 8.959548 TGTTGATGTGCATACAATATTTCTCTT 58.040 29.630 0.00 0.00 40.84 2.85
199 200 8.510243 TGTTGATGTGCATACAATATTTCTCT 57.490 30.769 0.00 0.00 40.84 3.10
200 201 9.229784 CTTGTTGATGTGCATACAATATTTCTC 57.770 33.333 0.00 0.00 40.84 2.87
201 202 8.959548 TCTTGTTGATGTGCATACAATATTTCT 58.040 29.630 0.00 0.00 40.84 2.52
202 203 9.740239 ATCTTGTTGATGTGCATACAATATTTC 57.260 29.630 0.00 0.00 40.84 2.17
205 206 9.565090 ACTATCTTGTTGATGTGCATACAATAT 57.435 29.630 0.00 0.00 40.84 1.28
206 207 8.962884 ACTATCTTGTTGATGTGCATACAATA 57.037 30.769 0.00 0.00 40.84 1.90
207 208 7.870509 ACTATCTTGTTGATGTGCATACAAT 57.129 32.000 0.00 0.00 40.84 2.71
208 209 8.040727 AGTACTATCTTGTTGATGTGCATACAA 58.959 33.333 0.00 0.00 40.84 2.41
209 210 7.555965 AGTACTATCTTGTTGATGTGCATACA 58.444 34.615 0.00 0.00 41.89 2.29
210 211 8.425577 AAGTACTATCTTGTTGATGTGCATAC 57.574 34.615 0.00 0.00 36.65 2.39
211 212 9.750125 CTAAGTACTATCTTGTTGATGTGCATA 57.250 33.333 0.00 0.00 36.65 3.14
212 213 8.478066 TCTAAGTACTATCTTGTTGATGTGCAT 58.522 33.333 0.00 0.00 36.65 3.96
213 214 7.836842 TCTAAGTACTATCTTGTTGATGTGCA 58.163 34.615 0.00 0.00 36.65 4.57
214 215 7.043059 GCTCTAAGTACTATCTTGTTGATGTGC 60.043 40.741 0.00 0.00 36.65 4.57
215 216 7.976175 TGCTCTAAGTACTATCTTGTTGATGTG 59.024 37.037 0.00 0.00 36.65 3.21
216 217 8.067751 TGCTCTAAGTACTATCTTGTTGATGT 57.932 34.615 0.00 0.00 36.65 3.06
217 218 8.409371 TCTGCTCTAAGTACTATCTTGTTGATG 58.591 37.037 0.00 0.00 36.65 3.07
218 219 8.526667 TCTGCTCTAAGTACTATCTTGTTGAT 57.473 34.615 0.00 0.00 39.11 2.57
219 220 7.939784 TCTGCTCTAAGTACTATCTTGTTGA 57.060 36.000 0.00 0.00 0.00 3.18
220 221 8.462811 TCTTCTGCTCTAAGTACTATCTTGTTG 58.537 37.037 0.00 0.00 0.00 3.33
221 222 8.582657 TCTTCTGCTCTAAGTACTATCTTGTT 57.417 34.615 0.00 0.00 0.00 2.83
222 223 8.582657 TTCTTCTGCTCTAAGTACTATCTTGT 57.417 34.615 0.00 0.00 0.00 3.16
223 224 9.296400 GTTTCTTCTGCTCTAAGTACTATCTTG 57.704 37.037 0.00 0.00 0.00 3.02
224 225 9.026121 TGTTTCTTCTGCTCTAAGTACTATCTT 57.974 33.333 0.00 0.00 0.00 2.40
225 226 8.582657 TGTTTCTTCTGCTCTAAGTACTATCT 57.417 34.615 0.00 0.00 0.00 1.98
226 227 9.640963 TTTGTTTCTTCTGCTCTAAGTACTATC 57.359 33.333 0.00 0.00 0.00 2.08
229 230 9.998106 TTATTTGTTTCTTCTGCTCTAAGTACT 57.002 29.630 0.00 0.00 0.00 2.73
231 232 9.436957 CCTTATTTGTTTCTTCTGCTCTAAGTA 57.563 33.333 0.00 0.00 0.00 2.24
232 233 7.391833 CCCTTATTTGTTTCTTCTGCTCTAAGT 59.608 37.037 0.00 0.00 0.00 2.24
233 234 7.607991 TCCCTTATTTGTTTCTTCTGCTCTAAG 59.392 37.037 0.00 0.00 0.00 2.18
234 235 7.458397 TCCCTTATTTGTTTCTTCTGCTCTAA 58.542 34.615 0.00 0.00 0.00 2.10
235 236 7.016153 TCCCTTATTTGTTTCTTCTGCTCTA 57.984 36.000 0.00 0.00 0.00 2.43
236 237 5.880901 TCCCTTATTTGTTTCTTCTGCTCT 58.119 37.500 0.00 0.00 0.00 4.09
237 238 6.575162 TTCCCTTATTTGTTTCTTCTGCTC 57.425 37.500 0.00 0.00 0.00 4.26
238 239 6.323739 TGTTTCCCTTATTTGTTTCTTCTGCT 59.676 34.615 0.00 0.00 0.00 4.24
239 240 6.512297 TGTTTCCCTTATTTGTTTCTTCTGC 58.488 36.000 0.00 0.00 0.00 4.26
240 241 9.546428 AAATGTTTCCCTTATTTGTTTCTTCTG 57.454 29.630 0.00 0.00 0.00 3.02
241 242 9.546428 CAAATGTTTCCCTTATTTGTTTCTTCT 57.454 29.630 0.00 0.00 37.15 2.85
242 243 9.325198 ACAAATGTTTCCCTTATTTGTTTCTTC 57.675 29.630 8.32 0.00 46.87 2.87
289 290 8.341903 TCGTGGAATCGTAAAATATTCGTAGTA 58.658 33.333 0.00 0.00 33.72 1.82
292 293 6.140580 CGTCGTGGAATCGTAAAATATTCGTA 59.859 38.462 0.00 0.00 33.72 3.43
295 296 6.264909 ACGTCGTGGAATCGTAAAATATTC 57.735 37.500 0.00 0.00 36.05 1.75
300 301 5.689514 TCTTTAACGTCGTGGAATCGTAAAA 59.310 36.000 0.00 0.00 36.80 1.52
312 313 6.183360 CCTGCTTGATATTTCTTTAACGTCGT 60.183 38.462 0.00 0.00 0.00 4.34
327 328 8.742777 GGATTTGATTTATATGCCTGCTTGATA 58.257 33.333 0.00 0.00 0.00 2.15
332 333 8.692710 CATATGGATTTGATTTATATGCCTGCT 58.307 33.333 0.00 0.00 0.00 4.24
333 334 8.472413 ACATATGGATTTGATTTATATGCCTGC 58.528 33.333 7.80 0.00 35.94 4.85
363 364 9.155053 GCGGAAAATCTTAACAATTTATAGTCG 57.845 33.333 0.00 0.00 0.00 4.18
365 366 8.885722 TCGCGGAAAATCTTAACAATTTATAGT 58.114 29.630 6.13 0.00 0.00 2.12
366 367 9.155053 GTCGCGGAAAATCTTAACAATTTATAG 57.845 33.333 6.13 0.00 0.00 1.31
371 372 5.365403 TGTCGCGGAAAATCTTAACAATT 57.635 34.783 6.13 0.00 0.00 2.32
375 376 6.945072 AGAATATGTCGCGGAAAATCTTAAC 58.055 36.000 6.13 0.00 0.00 2.01
415 416 1.936547 GCTTGCTATCTTTGGGACGAG 59.063 52.381 0.00 0.00 0.00 4.18
475 480 6.384224 CAGTAGAAACGGATGTGTGTAGTTA 58.616 40.000 0.00 0.00 0.00 2.24
484 489 1.207329 GAGCCCAGTAGAAACGGATGT 59.793 52.381 0.00 0.00 0.00 3.06
542 547 2.679934 CGCTCTGGAATGCGCACAA 61.680 57.895 14.90 0.00 45.50 3.33
548 553 3.512516 GTGCCCGCTCTGGAATGC 61.513 66.667 0.00 0.00 42.00 3.56
573 612 1.221414 GGTCGATGTGGATAAGCAGC 58.779 55.000 0.00 0.00 0.00 5.25
668 713 2.250485 GCTTGCACAGCGACACAG 59.750 61.111 5.35 0.00 39.29 3.66
728 773 3.885521 GCAGATGCAGGCCGAAGC 61.886 66.667 10.43 10.43 41.59 3.86
784 845 0.800239 AAAGGAGAGGGGAGAGGGAA 59.200 55.000 0.00 0.00 0.00 3.97
824 892 0.182537 TTGTGGTGGAGGTGAAGTGG 59.817 55.000 0.00 0.00 0.00 4.00
875 943 1.135721 GATGATGAACAAGGCAAGGGC 59.864 52.381 0.00 0.00 40.13 5.19
888 956 1.437573 GTGAGGCGACCGATGATGA 59.562 57.895 0.00 0.00 0.00 2.92
889 957 1.592669 GGTGAGGCGACCGATGATG 60.593 63.158 0.00 0.00 0.00 3.07
890 958 2.815308 GGTGAGGCGACCGATGAT 59.185 61.111 0.00 0.00 0.00 2.45
934 1002 2.431454 GAAGAAGGTGCAGAAGAAGGG 58.569 52.381 0.00 0.00 0.00 3.95
979 1047 4.017037 AGTGGATATCTGGATAGGATCGGT 60.017 45.833 2.05 0.00 0.00 4.69
1034 1113 5.241662 CGTTTCTCCTGGATCTTTCTCTTT 58.758 41.667 0.00 0.00 0.00 2.52
1035 1114 4.323104 CCGTTTCTCCTGGATCTTTCTCTT 60.323 45.833 0.00 0.00 0.00 2.85
1036 1115 3.196685 CCGTTTCTCCTGGATCTTTCTCT 59.803 47.826 0.00 0.00 0.00 3.10
1037 1116 3.526534 CCGTTTCTCCTGGATCTTTCTC 58.473 50.000 0.00 0.00 0.00 2.87
1038 1117 2.355209 GCCGTTTCTCCTGGATCTTTCT 60.355 50.000 0.00 0.00 0.00 2.52
1039 1118 2.010497 GCCGTTTCTCCTGGATCTTTC 58.990 52.381 0.00 0.00 0.00 2.62
1073 1152 3.127030 CGGTTTGTTTAGCTTGGGAGATC 59.873 47.826 0.00 0.00 0.00 2.75
1074 1153 3.081804 CGGTTTGTTTAGCTTGGGAGAT 58.918 45.455 0.00 0.00 0.00 2.75
1075 1154 2.500229 CGGTTTGTTTAGCTTGGGAGA 58.500 47.619 0.00 0.00 0.00 3.71
1076 1155 1.068541 GCGGTTTGTTTAGCTTGGGAG 60.069 52.381 0.00 0.00 0.00 4.30
1089 1168 1.128692 CTAAGAAGGAAGCGCGGTTTG 59.871 52.381 25.80 0.00 0.00 2.93
1095 1174 0.176910 AGAGGCTAAGAAGGAAGCGC 59.823 55.000 0.00 0.00 39.71 5.92
1096 1175 1.933247 CAGAGGCTAAGAAGGAAGCG 58.067 55.000 0.00 0.00 39.71 4.68
1164 1243 0.105709 CCTCCTCCTCCTTCCTCTCC 60.106 65.000 0.00 0.00 0.00 3.71
1191 1270 4.216472 TCGATCGGTTGATTCTATGGAGAG 59.784 45.833 16.41 0.00 34.09 3.20
1215 1294 1.910580 GCCAAGATCAAGACCCCCGA 61.911 60.000 0.00 0.00 0.00 5.14
1235 1314 1.829349 GATCTGCCGCATTCTCGCTG 61.829 60.000 0.00 0.00 0.00 5.18
1514 1603 4.617959 CCACCGGTACTATGTTGTGATAG 58.382 47.826 6.87 0.00 32.88 2.08
1527 1616 2.507769 GCTACACGCCACCGGTAC 60.508 66.667 6.87 0.66 39.22 3.34
1544 1633 2.681848 GGTGGATGCTGATCTTTGACTG 59.318 50.000 0.00 0.00 0.00 3.51
1551 1640 1.137086 GTACGTGGTGGATGCTGATCT 59.863 52.381 0.00 0.00 0.00 2.75
1552 1641 1.137086 AGTACGTGGTGGATGCTGATC 59.863 52.381 0.00 0.00 0.00 2.92
1553 1642 1.137086 GAGTACGTGGTGGATGCTGAT 59.863 52.381 0.00 0.00 0.00 2.90
1554 1643 0.530744 GAGTACGTGGTGGATGCTGA 59.469 55.000 0.00 0.00 0.00 4.26
1555 1644 0.460284 GGAGTACGTGGTGGATGCTG 60.460 60.000 0.00 0.00 0.00 4.41
1557 1646 1.518572 CGGAGTACGTGGTGGATGC 60.519 63.158 0.00 0.00 37.93 3.91
1558 1647 1.518572 GCGGAGTACGTGGTGGATG 60.519 63.158 0.00 0.00 46.52 3.51
1560 1649 2.598099 TGCGGAGTACGTGGTGGA 60.598 61.111 0.00 0.00 46.52 4.02
1561 1650 2.431942 GTGCGGAGTACGTGGTGG 60.432 66.667 0.00 0.00 46.52 4.61
1615 1704 7.148507 CCTCTCTAGTAGCAGAAATTTGTGTTG 60.149 40.741 15.91 0.00 0.00 3.33
1635 1724 6.183361 CCATAATTAACCTCTTCTGCCTCTCT 60.183 42.308 0.00 0.00 0.00 3.10
1675 1769 2.046292 TGTGGAACAGAGACCATGTCA 58.954 47.619 0.00 0.00 45.67 3.58
1760 1858 8.912988 TGAAAACTGATTTATTTCTTCTGTGGT 58.087 29.630 0.00 0.00 34.84 4.16
1807 1905 8.669243 CGGGATCCAATCTCTATTTTATTTAGC 58.331 37.037 15.23 0.00 0.00 3.09
1809 1907 9.720769 GACGGGATCCAATCTCTATTTTATTTA 57.279 33.333 15.23 0.00 0.00 1.40
1892 1996 4.512198 CGTACAGAATACCACCACAAAACA 59.488 41.667 0.00 0.00 0.00 2.83
1919 2023 8.275758 TGGTAAATGATGGCCTAACAATAGTTA 58.724 33.333 3.32 0.00 39.15 2.24
1934 2038 5.965334 GCAACACGTAATCTGGTAAATGATG 59.035 40.000 0.00 0.00 0.00 3.07
1935 2039 5.065988 GGCAACACGTAATCTGGTAAATGAT 59.934 40.000 0.00 0.00 0.00 2.45
1941 2045 3.688694 AAGGCAACACGTAATCTGGTA 57.311 42.857 0.00 0.00 41.41 3.25
1961 2065 1.578897 TGATCCAGGATCGTCCCAAA 58.421 50.000 22.41 2.35 41.51 3.28
2096 3392 4.068599 ACAAACAAACCCAACACCTTTTG 58.931 39.130 0.00 0.00 35.49 2.44
2100 3396 2.027653 CCAACAAACAAACCCAACACCT 60.028 45.455 0.00 0.00 0.00 4.00
2102 3398 2.289756 ACCCAACAAACAAACCCAACAC 60.290 45.455 0.00 0.00 0.00 3.32
2103 3399 1.978580 ACCCAACAAACAAACCCAACA 59.021 42.857 0.00 0.00 0.00 3.33
2104 3400 2.772077 ACCCAACAAACAAACCCAAC 57.228 45.000 0.00 0.00 0.00 3.77
2105 3401 3.328050 AGAAACCCAACAAACAAACCCAA 59.672 39.130 0.00 0.00 0.00 4.12
2106 3402 2.907042 AGAAACCCAACAAACAAACCCA 59.093 40.909 0.00 0.00 0.00 4.51
2107 3403 3.620427 AGAAACCCAACAAACAAACCC 57.380 42.857 0.00 0.00 0.00 4.11
2108 3404 3.687212 CCAAGAAACCCAACAAACAAACC 59.313 43.478 0.00 0.00 0.00 3.27
2109 3405 4.320023 ACCAAGAAACCCAACAAACAAAC 58.680 39.130 0.00 0.00 0.00 2.93
2110 3406 4.625607 ACCAAGAAACCCAACAAACAAA 57.374 36.364 0.00 0.00 0.00 2.83
2111 3407 5.659079 AGATACCAAGAAACCCAACAAACAA 59.341 36.000 0.00 0.00 0.00 2.83
2112 3408 5.068460 CAGATACCAAGAAACCCAACAAACA 59.932 40.000 0.00 0.00 0.00 2.83
2113 3409 5.300792 TCAGATACCAAGAAACCCAACAAAC 59.699 40.000 0.00 0.00 0.00 2.93
2114 3410 5.450453 TCAGATACCAAGAAACCCAACAAA 58.550 37.500 0.00 0.00 0.00 2.83
2115 3411 5.055265 TCAGATACCAAGAAACCCAACAA 57.945 39.130 0.00 0.00 0.00 2.83
2147 3443 2.956333 AGGTGTTTAACTGTCCAAAGCC 59.044 45.455 0.00 0.00 0.00 4.35
2240 3788 9.432077 CAAAAAGTGGTTAATTACATGTTTTGC 57.568 29.630 2.30 0.00 32.09 3.68
2280 3832 5.841957 TCTAACCCGATAACTAACTGTCC 57.158 43.478 0.00 0.00 0.00 4.02
2311 3863 6.263617 AGGGAGTGTCTATTTCTAAGTCGATC 59.736 42.308 0.00 0.00 0.00 3.69
2316 3868 9.102453 AGTTTAAGGGAGTGTCTATTTCTAAGT 57.898 33.333 0.00 0.00 0.00 2.24
2353 3905 7.544566 TGAGTAGTCAAATTAGATCGTGTTTCC 59.455 37.037 0.00 0.00 0.00 3.13
2363 3915 5.047590 TGCGGAACTGAGTAGTCAAATTAGA 60.048 40.000 1.11 0.00 35.69 2.10
2411 4002 2.192861 CAGACGGCCCTTTTGTGCA 61.193 57.895 0.00 0.00 0.00 4.57
2420 4011 1.966451 CAACTGAACCAGACGGCCC 60.966 63.158 0.00 0.00 35.18 5.80
2426 4018 3.358111 TTGACAACCAACTGAACCAGA 57.642 42.857 0.45 0.00 35.18 3.86
2467 4061 7.403421 CGTGCCGTGATAGATTTTATGTTTTA 58.597 34.615 0.00 0.00 0.00 1.52
2472 4066 3.363970 GGCGTGCCGTGATAGATTTTATG 60.364 47.826 0.00 0.00 0.00 1.90
2534 4128 9.796120 GAAACGAAAATATTGAAATGATGGGTA 57.204 29.630 0.00 0.00 0.00 3.69
2597 4200 5.219987 CCGTAAGAAATCGAGAAGAAACGAC 60.220 44.000 10.47 0.00 39.85 4.34
2622 4225 5.132897 AGAAAACACACAAGCAAACAGAA 57.867 34.783 0.00 0.00 0.00 3.02
2928 4534 1.375908 GATGGACAGAGCCGTGCAA 60.376 57.895 0.00 0.00 40.83 4.08
3109 4759 3.166434 TGGCCGTCCCAAGAATGT 58.834 55.556 0.00 0.00 41.82 2.71
3118 4768 3.134127 GGTGAGCAATGGCCGTCC 61.134 66.667 0.00 0.00 42.56 4.79
3351 5002 0.898320 CCAGGATGACGAACTGGTCT 59.102 55.000 0.00 0.00 45.21 3.85
3421 5084 0.034476 TCAGTCTGCTGTGCTGGAAG 59.966 55.000 14.05 0.00 43.05 3.46
3445 5108 0.251698 TGCCCAAGATGTTGCCATGA 60.252 50.000 0.00 0.00 31.64 3.07
3678 5349 3.049080 GCTTTCCCCTCGCCCTGAT 62.049 63.158 0.00 0.00 0.00 2.90
3748 5419 0.730265 CCTTCTGGTCGTCTCTCTCG 59.270 60.000 0.00 0.00 0.00 4.04
3820 5500 2.512515 GATCCACCGGCAGCAGTC 60.513 66.667 0.00 0.00 0.00 3.51
3846 5526 0.872388 GCGTGTCAAAACCGGAGAAT 59.128 50.000 9.46 0.00 0.00 2.40
3931 5611 4.575885 TGGAGGACGAAAATAAGGACAAG 58.424 43.478 0.00 0.00 0.00 3.16
3949 5629 1.817099 GCCAACGAGAGCCATGGAG 60.817 63.158 18.40 2.91 35.40 3.86
3968 5648 5.873712 ACTGTCTCTCATAGTGCATTTTCAG 59.126 40.000 0.00 0.00 0.00 3.02
3999 5682 8.473796 GTGACGTTTTGTACACCAATAATTTTC 58.526 33.333 0.00 0.00 31.81 2.29
4004 5687 6.432607 TTGTGACGTTTTGTACACCAATAA 57.567 33.333 0.00 0.00 31.81 1.40
4036 5730 8.510243 TTATGGCCATATGATCATTGATGTAC 57.490 34.615 25.95 7.84 0.00 2.90
4048 5742 5.059134 TGGTGTGATTTATGGCCATATGA 57.941 39.130 25.95 17.50 0.00 2.15
4087 5781 2.179764 TGGCAGACGGCAAAATAGC 58.820 52.632 0.00 0.00 46.20 2.97
4158 5852 3.011760 GAGTCTTTTGCCGTCCGCG 62.012 63.158 0.00 0.00 42.08 6.46
4159 5853 2.677979 GGAGTCTTTTGCCGTCCGC 61.678 63.158 0.00 0.00 38.31 5.54
4160 5854 2.380410 CGGAGTCTTTTGCCGTCCG 61.380 63.158 0.00 0.00 43.82 4.79
4161 5855 2.033194 CCGGAGTCTTTTGCCGTCC 61.033 63.158 0.00 0.00 43.35 4.79
4162 5856 2.677979 GCCGGAGTCTTTTGCCGTC 61.678 63.158 5.05 0.00 43.35 4.79
4163 5857 2.668550 GCCGGAGTCTTTTGCCGT 60.669 61.111 5.05 0.00 43.35 5.68
4164 5858 1.791103 TTTGCCGGAGTCTTTTGCCG 61.791 55.000 5.05 0.00 44.42 5.69
4165 5859 0.039165 CTTTGCCGGAGTCTTTTGCC 60.039 55.000 5.05 0.00 0.00 4.52
4166 5860 0.668535 ACTTTGCCGGAGTCTTTTGC 59.331 50.000 5.05 0.00 0.00 3.68
4167 5861 2.484264 CCTACTTTGCCGGAGTCTTTTG 59.516 50.000 5.05 0.00 0.00 2.44
4168 5862 2.779506 CCTACTTTGCCGGAGTCTTTT 58.220 47.619 5.05 0.00 0.00 2.27
4169 5863 1.610886 GCCTACTTTGCCGGAGTCTTT 60.611 52.381 5.05 0.00 0.00 2.52
4170 5864 0.036294 GCCTACTTTGCCGGAGTCTT 60.036 55.000 5.05 0.00 0.00 3.01
4171 5865 0.905337 AGCCTACTTTGCCGGAGTCT 60.905 55.000 5.05 0.00 0.00 3.24
4172 5866 0.822164 TAGCCTACTTTGCCGGAGTC 59.178 55.000 5.05 0.00 0.00 3.36
4173 5867 0.535797 GTAGCCTACTTTGCCGGAGT 59.464 55.000 5.05 1.61 0.00 3.85
4174 5868 0.527817 CGTAGCCTACTTTGCCGGAG 60.528 60.000 5.05 0.00 0.00 4.63
4175 5869 1.514087 CGTAGCCTACTTTGCCGGA 59.486 57.895 5.05 0.00 0.00 5.14
4176 5870 1.520787 CCGTAGCCTACTTTGCCGG 60.521 63.158 0.00 0.00 0.00 6.13
4177 5871 0.457035 TACCGTAGCCTACTTTGCCG 59.543 55.000 0.00 0.00 0.00 5.69
4218 5912 3.423154 GCCGTCTGTTTCCTGGCG 61.423 66.667 0.00 0.00 37.38 5.69
4219 5913 1.452145 TTTGCCGTCTGTTTCCTGGC 61.452 55.000 0.00 0.00 45.91 4.85
4222 5916 1.416401 TCTCTTTGCCGTCTGTTTCCT 59.584 47.619 0.00 0.00 0.00 3.36
4225 5919 1.230324 GCTCTCTTTGCCGTCTGTTT 58.770 50.000 0.00 0.00 0.00 2.83
4226 5920 0.946221 CGCTCTCTTTGCCGTCTGTT 60.946 55.000 0.00 0.00 0.00 3.16
4227 5921 1.373497 CGCTCTCTTTGCCGTCTGT 60.373 57.895 0.00 0.00 0.00 3.41
4229 5923 2.262915 CCGCTCTCTTTGCCGTCT 59.737 61.111 0.00 0.00 0.00 4.18
4434 6158 3.723348 GGCGCCGACCAAGTGAAC 61.723 66.667 12.58 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.