Multiple sequence alignment - TraesCS1D01G229700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G229700 chr1D 100.000 5836 0 0 1 5836 318105127 318099292 0.000000e+00 10778.0
1 TraesCS1D01G229700 chr1D 89.810 1158 92 14 2796 3945 317997146 317996007 0.000000e+00 1461.0
2 TraesCS1D01G229700 chr1D 85.181 992 125 16 2807 3790 318162485 318161508 0.000000e+00 998.0
3 TraesCS1D01G229700 chr1D 93.579 623 33 7 1 619 444890814 444890195 0.000000e+00 922.0
4 TraesCS1D01G229700 chr1D 78.603 673 76 35 3464 4110 318124807 318124177 3.300000e-102 383.0
5 TraesCS1D01G229700 chr1D 91.632 239 13 3 1424 1658 317999059 317998824 2.030000e-84 324.0
6 TraesCS1D01G229700 chr1D 92.308 221 13 2 636 852 318125039 318124819 1.580000e-80 311.0
7 TraesCS1D01G229700 chr1D 87.442 215 21 3 1435 1643 318163902 318163688 5.840000e-60 243.0
8 TraesCS1D01G229700 chr1B 91.932 1884 101 22 2331 4190 429900794 429898938 0.000000e+00 2590.0
9 TraesCS1D01G229700 chr1B 86.804 1311 72 40 663 1926 429902667 429901411 0.000000e+00 1369.0
10 TraesCS1D01G229700 chr1B 88.061 1181 101 25 2796 3945 429766417 429765246 0.000000e+00 1363.0
11 TraesCS1D01G229700 chr1B 81.436 738 111 16 4188 4906 384490807 384491537 1.090000e-161 580.0
12 TraesCS1D01G229700 chr1B 86.226 530 58 12 3268 3790 429977018 429976497 1.420000e-155 560.0
13 TraesCS1D01G229700 chr1B 83.705 583 49 26 1088 1656 429768400 429767850 5.220000e-140 508.0
14 TraesCS1D01G229700 chr1B 90.572 297 23 2 1955 2251 429901414 429901123 7.090000e-104 388.0
15 TraesCS1D01G229700 chr1B 76.855 674 83 50 3464 4110 429917681 429917054 4.390000e-81 313.0
16 TraesCS1D01G229700 chr1B 91.855 221 14 2 636 852 429917912 429917692 7.350000e-79 305.0
17 TraesCS1D01G229700 chr1B 87.963 216 20 3 1434 1643 429978917 429978702 3.490000e-62 250.0
18 TraesCS1D01G229700 chr1B 97.561 41 1 0 5008 5048 429898762 429898722 2.920000e-08 71.3
19 TraesCS1D01G229700 chr1A 88.109 2094 137 45 619 2668 399246721 399244696 0.000000e+00 2385.0
20 TraesCS1D01G229700 chr1A 92.481 1064 58 12 2795 3858 399244177 399243136 0.000000e+00 1502.0
21 TraesCS1D01G229700 chr1A 89.362 1128 94 17 2796 3914 399230921 399229811 0.000000e+00 1395.0
22 TraesCS1D01G229700 chr1A 85.960 990 114 18 2807 3790 399472646 399471676 0.000000e+00 1035.0
23 TraesCS1D01G229700 chr1A 89.841 315 11 13 1409 1706 399232293 399231983 9.170000e-103 385.0
24 TraesCS1D01G229700 chr1A 77.663 676 85 35 3464 4110 399423748 399423110 9.300000e-93 351.0
25 TraesCS1D01G229700 chr1A 90.336 238 18 3 619 852 399423996 399423760 2.040000e-79 307.0
26 TraesCS1D01G229700 chr1A 87.168 226 23 3 1429 1648 399473951 399473726 9.710000e-63 252.0
27 TraesCS1D01G229700 chr1A 89.865 148 10 2 3920 4065 399243119 399242975 9.990000e-43 185.0
28 TraesCS1D01G229700 chr1A 96.667 60 2 0 4917 4976 399242861 399242802 3.720000e-17 100.0
29 TraesCS1D01G229700 chr1A 85.437 103 5 3 4095 4190 399242973 399242874 1.340000e-16 99.0
30 TraesCS1D01G229700 chr1A 85.882 85 10 2 5008 5092 399242689 399242607 8.050000e-14 89.8
31 TraesCS1D01G229700 chr5D 92.403 724 46 8 5117 5834 106691427 106690707 0.000000e+00 1024.0
32 TraesCS1D01G229700 chr5D 90.450 733 61 8 5107 5834 448736545 448735817 0.000000e+00 957.0
33 TraesCS1D01G229700 chr5D 85.382 602 71 14 5117 5707 555500648 555500053 5.000000e-170 608.0
34 TraesCS1D01G229700 chr5D 78.502 307 43 14 4192 4479 548470554 548470252 4.650000e-41 180.0
35 TraesCS1D01G229700 chr3D 92.083 720 53 4 5117 5835 228165237 228165953 0.000000e+00 1011.0
36 TraesCS1D01G229700 chr7D 91.436 724 53 8 5117 5836 581024112 581023394 0.000000e+00 985.0
37 TraesCS1D01G229700 chr7D 91.209 728 56 7 5110 5834 100991607 100992329 0.000000e+00 983.0
38 TraesCS1D01G229700 chr7D 90.997 722 60 5 5117 5836 575751118 575750400 0.000000e+00 968.0
39 TraesCS1D01G229700 chr7D 94.855 622 26 5 1 618 576644412 576645031 0.000000e+00 966.0
40 TraesCS1D01G229700 chr7D 94.391 624 29 3 1 620 145919429 145920050 0.000000e+00 953.0
41 TraesCS1D01G229700 chr7D 94.203 621 33 2 1 620 616465289 616465907 0.000000e+00 944.0
42 TraesCS1D01G229700 chr7D 93.323 629 35 7 1 627 164761560 164762183 0.000000e+00 922.0
43 TraesCS1D01G229700 chr7D 87.242 533 40 10 5107 5617 364624221 364624747 3.030000e-162 582.0
44 TraesCS1D01G229700 chr5B 91.632 717 52 6 5123 5836 400552876 400552165 0.000000e+00 985.0
45 TraesCS1D01G229700 chr7B 90.871 723 60 4 5117 5836 428923832 428923113 0.000000e+00 965.0
46 TraesCS1D01G229700 chr7B 88.976 508 52 4 5110 5617 672484127 672483624 4.970000e-175 625.0
47 TraesCS1D01G229700 chr7B 81.572 738 110 16 4188 4906 585875091 585875821 2.340000e-163 586.0
48 TraesCS1D01G229700 chr7B 81.310 733 102 19 4192 4906 736602673 736603388 3.950000e-156 562.0
49 TraesCS1D01G229700 chr6D 91.010 723 54 8 5117 5836 149030986 149030272 0.000000e+00 965.0
50 TraesCS1D01G229700 chr6D 85.286 768 99 11 2796 3554 443352836 443353598 0.000000e+00 780.0
51 TraesCS1D01G229700 chr6D 85.026 768 100 12 2796 3554 443453945 443454706 0.000000e+00 767.0
52 TraesCS1D01G229700 chr6D 78.689 305 43 17 4192 4479 13177404 13177105 3.590000e-42 183.0
53 TraesCS1D01G229700 chr2D 94.703 623 26 7 1 618 276936128 276936748 0.000000e+00 961.0
54 TraesCS1D01G229700 chr2D 94.212 622 29 7 2 619 285349631 285349013 0.000000e+00 942.0
55 TraesCS1D01G229700 chr2D 93.861 619 33 4 1 616 534727492 534728108 0.000000e+00 928.0
56 TraesCS1D01G229700 chr2D 81.698 754 91 27 4192 4908 568117621 568118364 8.430000e-163 584.0
57 TraesCS1D01G229700 chr2D 85.288 503 60 11 5107 5602 193402043 193401548 1.880000e-139 507.0
58 TraesCS1D01G229700 chr2D 85.648 216 25 3 1434 1643 79517105 79516890 7.610000e-54 222.0
59 TraesCS1D01G229700 chr2D 77.492 311 46 16 4189 4479 26777592 26777898 1.300000e-36 165.0
60 TraesCS1D01G229700 chr7A 93.153 628 35 6 1 625 649076121 649075499 0.000000e+00 915.0
61 TraesCS1D01G229700 chr7A 83.882 608 83 13 5107 5704 570119821 570120423 3.050000e-157 566.0
62 TraesCS1D01G229700 chr7A 80.374 749 101 27 4192 4904 163616022 163616760 1.440000e-145 527.0
63 TraesCS1D01G229700 chr3A 92.012 651 44 7 5122 5768 433997281 433996635 0.000000e+00 907.0
64 TraesCS1D01G229700 chr3A 80.186 752 102 26 4192 4907 486037703 486036963 2.410000e-143 520.0
65 TraesCS1D01G229700 chr3A 79.866 745 101 26 4201 4906 595761910 595761176 3.140000e-137 499.0
66 TraesCS1D01G229700 chr3A 79.044 711 98 28 4192 4861 516795023 516795723 1.930000e-119 440.0
67 TraesCS1D01G229700 chr3A 83.855 415 62 5 4493 4904 52205408 52204996 1.970000e-104 390.0
68 TraesCS1D01G229700 chr3A 86.364 88 5 5 4821 4907 142904068 142904149 8.050000e-14 89.8
69 TraesCS1D01G229700 chr4A 80.820 756 97 28 4188 4907 591072421 591073164 3.070000e-152 549.0
70 TraesCS1D01G229700 chr2B 85.770 513 63 9 5107 5617 775662257 775662761 8.610000e-148 534.0
71 TraesCS1D01G229700 chr2B 85.770 513 63 9 5107 5617 775731146 775731650 8.610000e-148 534.0
72 TraesCS1D01G229700 chr2B 79.412 136 20 5 4189 4323 796607818 796607946 8.050000e-14 89.8
73 TraesCS1D01G229700 chr6A 82.619 420 67 6 4491 4907 84910390 84909974 3.320000e-97 366.0
74 TraesCS1D01G229700 chr6A 80.719 306 38 15 4192 4493 84910710 84910422 9.850000e-53 219.0
75 TraesCS1D01G229700 chr6A 79.221 308 39 12 4192 4479 563478702 563479004 2.150000e-44 191.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G229700 chr1D 318099292 318105127 5835 True 10778.000 10778 100.000000 1 5836 1 chr1D.!!$R1 5835
1 TraesCS1D01G229700 chr1D 444890195 444890814 619 True 922.000 922 93.579000 1 619 1 chr1D.!!$R2 618
2 TraesCS1D01G229700 chr1D 317996007 317999059 3052 True 892.500 1461 90.721000 1424 3945 2 chr1D.!!$R3 2521
3 TraesCS1D01G229700 chr1D 318161508 318163902 2394 True 620.500 998 86.311500 1435 3790 2 chr1D.!!$R5 2355
4 TraesCS1D01G229700 chr1D 318124177 318125039 862 True 347.000 383 85.455500 636 4110 2 chr1D.!!$R4 3474
5 TraesCS1D01G229700 chr1B 429898722 429902667 3945 True 1104.575 2590 91.717250 663 5048 4 chr1B.!!$R2 4385
6 TraesCS1D01G229700 chr1B 429765246 429768400 3154 True 935.500 1363 85.883000 1088 3945 2 chr1B.!!$R1 2857
7 TraesCS1D01G229700 chr1B 384490807 384491537 730 False 580.000 580 81.436000 4188 4906 1 chr1B.!!$F1 718
8 TraesCS1D01G229700 chr1B 429976497 429978917 2420 True 405.000 560 87.094500 1434 3790 2 chr1B.!!$R4 2356
9 TraesCS1D01G229700 chr1B 429917054 429917912 858 True 309.000 313 84.355000 636 4110 2 chr1B.!!$R3 3474
10 TraesCS1D01G229700 chr1A 399229811 399232293 2482 True 890.000 1395 89.601500 1409 3914 2 chr1A.!!$R1 2505
11 TraesCS1D01G229700 chr1A 399242607 399246721 4114 True 726.800 2385 89.740167 619 5092 6 chr1A.!!$R2 4473
12 TraesCS1D01G229700 chr1A 399471676 399473951 2275 True 643.500 1035 86.564000 1429 3790 2 chr1A.!!$R4 2361
13 TraesCS1D01G229700 chr1A 399423110 399423996 886 True 329.000 351 83.999500 619 4110 2 chr1A.!!$R3 3491
14 TraesCS1D01G229700 chr5D 106690707 106691427 720 True 1024.000 1024 92.403000 5117 5834 1 chr5D.!!$R1 717
15 TraesCS1D01G229700 chr5D 448735817 448736545 728 True 957.000 957 90.450000 5107 5834 1 chr5D.!!$R2 727
16 TraesCS1D01G229700 chr5D 555500053 555500648 595 True 608.000 608 85.382000 5117 5707 1 chr5D.!!$R4 590
17 TraesCS1D01G229700 chr3D 228165237 228165953 716 False 1011.000 1011 92.083000 5117 5835 1 chr3D.!!$F1 718
18 TraesCS1D01G229700 chr7D 581023394 581024112 718 True 985.000 985 91.436000 5117 5836 1 chr7D.!!$R2 719
19 TraesCS1D01G229700 chr7D 100991607 100992329 722 False 983.000 983 91.209000 5110 5834 1 chr7D.!!$F1 724
20 TraesCS1D01G229700 chr7D 575750400 575751118 718 True 968.000 968 90.997000 5117 5836 1 chr7D.!!$R1 719
21 TraesCS1D01G229700 chr7D 576644412 576645031 619 False 966.000 966 94.855000 1 618 1 chr7D.!!$F5 617
22 TraesCS1D01G229700 chr7D 145919429 145920050 621 False 953.000 953 94.391000 1 620 1 chr7D.!!$F2 619
23 TraesCS1D01G229700 chr7D 616465289 616465907 618 False 944.000 944 94.203000 1 620 1 chr7D.!!$F6 619
24 TraesCS1D01G229700 chr7D 164761560 164762183 623 False 922.000 922 93.323000 1 627 1 chr7D.!!$F3 626
25 TraesCS1D01G229700 chr7D 364624221 364624747 526 False 582.000 582 87.242000 5107 5617 1 chr7D.!!$F4 510
26 TraesCS1D01G229700 chr5B 400552165 400552876 711 True 985.000 985 91.632000 5123 5836 1 chr5B.!!$R1 713
27 TraesCS1D01G229700 chr7B 428923113 428923832 719 True 965.000 965 90.871000 5117 5836 1 chr7B.!!$R1 719
28 TraesCS1D01G229700 chr7B 672483624 672484127 503 True 625.000 625 88.976000 5110 5617 1 chr7B.!!$R2 507
29 TraesCS1D01G229700 chr7B 585875091 585875821 730 False 586.000 586 81.572000 4188 4906 1 chr7B.!!$F1 718
30 TraesCS1D01G229700 chr7B 736602673 736603388 715 False 562.000 562 81.310000 4192 4906 1 chr7B.!!$F2 714
31 TraesCS1D01G229700 chr6D 149030272 149030986 714 True 965.000 965 91.010000 5117 5836 1 chr6D.!!$R2 719
32 TraesCS1D01G229700 chr6D 443352836 443353598 762 False 780.000 780 85.286000 2796 3554 1 chr6D.!!$F1 758
33 TraesCS1D01G229700 chr6D 443453945 443454706 761 False 767.000 767 85.026000 2796 3554 1 chr6D.!!$F2 758
34 TraesCS1D01G229700 chr2D 276936128 276936748 620 False 961.000 961 94.703000 1 618 1 chr2D.!!$F2 617
35 TraesCS1D01G229700 chr2D 285349013 285349631 618 True 942.000 942 94.212000 2 619 1 chr2D.!!$R3 617
36 TraesCS1D01G229700 chr2D 534727492 534728108 616 False 928.000 928 93.861000 1 616 1 chr2D.!!$F3 615
37 TraesCS1D01G229700 chr2D 568117621 568118364 743 False 584.000 584 81.698000 4192 4908 1 chr2D.!!$F4 716
38 TraesCS1D01G229700 chr7A 649075499 649076121 622 True 915.000 915 93.153000 1 625 1 chr7A.!!$R1 624
39 TraesCS1D01G229700 chr7A 570119821 570120423 602 False 566.000 566 83.882000 5107 5704 1 chr7A.!!$F2 597
40 TraesCS1D01G229700 chr7A 163616022 163616760 738 False 527.000 527 80.374000 4192 4904 1 chr7A.!!$F1 712
41 TraesCS1D01G229700 chr3A 433996635 433997281 646 True 907.000 907 92.012000 5122 5768 1 chr3A.!!$R2 646
42 TraesCS1D01G229700 chr3A 486036963 486037703 740 True 520.000 520 80.186000 4192 4907 1 chr3A.!!$R3 715
43 TraesCS1D01G229700 chr3A 595761176 595761910 734 True 499.000 499 79.866000 4201 4906 1 chr3A.!!$R4 705
44 TraesCS1D01G229700 chr3A 516795023 516795723 700 False 440.000 440 79.044000 4192 4861 1 chr3A.!!$F2 669
45 TraesCS1D01G229700 chr4A 591072421 591073164 743 False 549.000 549 80.820000 4188 4907 1 chr4A.!!$F1 719
46 TraesCS1D01G229700 chr2B 775662257 775662761 504 False 534.000 534 85.770000 5107 5617 1 chr2B.!!$F1 510
47 TraesCS1D01G229700 chr2B 775731146 775731650 504 False 534.000 534 85.770000 5107 5617 1 chr2B.!!$F2 510
48 TraesCS1D01G229700 chr6A 84909974 84910710 736 True 292.500 366 81.669000 4192 4907 2 chr6A.!!$R1 715

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
482 488 0.259065 ATAGGCGTGTGAGAGAGGGA 59.741 55.0 0.00 0.00 0.00 4.20 F
1203 1238 0.321387 GGAACTCCCGGGAACAAGAC 60.321 60.0 26.68 12.31 0.00 3.01 F
1261 1299 0.390735 GCTAAAGAAACCGCCCGAGA 60.391 55.0 0.00 0.00 0.00 4.04 F
1665 1755 0.469892 TCCATCCATCGCCTCTGCTA 60.470 55.0 0.00 0.00 34.43 3.49 F
2069 2248 0.611714 GTTCAAACCTCTCCCCGCTA 59.388 55.0 0.00 0.00 0.00 4.26 F
3850 5966 0.951040 GCCGTGTGGACAAGGAAGAG 60.951 60.0 15.02 0.00 46.41 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 1446 0.040425 CAACCAAAAGAGTTCGGCGG 60.040 55.000 7.21 0.00 0.00 6.13 R
2833 4831 0.458543 TCGAAGATGCCGCAGAAGAC 60.459 55.000 0.00 0.00 0.00 3.01 R
3249 5247 0.250467 AAGCATCCTGAACGTGCAGT 60.250 50.000 22.15 1.38 41.19 4.40 R
3640 5753 2.030562 CACCGCCTCTTCGTTGGT 59.969 61.111 0.00 0.00 0.00 3.67 R
3900 6019 0.173708 GCGGTCTTTCGGTCTCTGAT 59.826 55.000 0.00 0.00 0.00 2.90 R
5138 7422 0.034477 AGACCCCTTTAATGCCCACG 60.034 55.000 0.00 0.00 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 75 4.155462 CGGCAACTGTCTAGTGTTAGTAGA 59.845 45.833 0.00 0.00 37.19 2.59
81 85 6.095720 GTCTAGTGTTAGTAGATGGCAACTCT 59.904 42.308 0.00 0.00 33.16 3.24
96 100 7.589958 TGGCAACTCTTAAGGTTTTCAAATA 57.410 32.000 1.85 0.00 37.61 1.40
126 130 6.034161 ACTGTAGTAAACCAGACCATACAC 57.966 41.667 0.00 0.00 32.93 2.90
178 182 7.867403 GCAACCTCTAAAGTTTTCAAATCATGA 59.133 33.333 0.00 0.00 35.85 3.07
257 263 1.002888 ACACTTGACCTGAGATGGCAG 59.997 52.381 0.00 0.00 35.66 4.85
480 486 1.107114 ACATAGGCGTGTGAGAGAGG 58.893 55.000 10.28 0.00 0.00 3.69
481 487 0.387202 CATAGGCGTGTGAGAGAGGG 59.613 60.000 0.00 0.00 0.00 4.30
482 488 0.259065 ATAGGCGTGTGAGAGAGGGA 59.741 55.000 0.00 0.00 0.00 4.20
483 489 0.680280 TAGGCGTGTGAGAGAGGGAC 60.680 60.000 0.00 0.00 0.00 4.46
485 491 2.878429 CGTGTGAGAGAGGGACCG 59.122 66.667 0.00 0.00 0.00 4.79
486 492 1.972223 CGTGTGAGAGAGGGACCGT 60.972 63.158 0.00 0.00 0.00 4.83
487 493 0.675837 CGTGTGAGAGAGGGACCGTA 60.676 60.000 0.00 0.00 0.00 4.02
488 494 1.542492 GTGTGAGAGAGGGACCGTAA 58.458 55.000 0.00 0.00 0.00 3.18
489 495 1.473278 GTGTGAGAGAGGGACCGTAAG 59.527 57.143 0.00 0.00 0.00 2.34
627 638 5.910166 CAGTTATCGTCGTCCTAGATCTTTG 59.090 44.000 0.00 0.00 0.00 2.77
630 641 2.753452 TCGTCGTCCTAGATCTTTGCTT 59.247 45.455 0.00 0.00 0.00 3.91
631 642 2.854777 CGTCGTCCTAGATCTTTGCTTG 59.145 50.000 0.00 0.00 0.00 4.01
633 644 3.096852 TCGTCCTAGATCTTTGCTTGGA 58.903 45.455 0.00 0.00 35.43 3.53
790 806 1.668101 GGGGACAAAACGCAACACCA 61.668 55.000 0.00 0.00 0.00 4.17
853 871 3.817084 CAGAACATATACCCGTCGTCCTA 59.183 47.826 0.00 0.00 0.00 2.94
854 872 4.458295 CAGAACATATACCCGTCGTCCTAT 59.542 45.833 0.00 0.00 0.00 2.57
855 873 4.699257 AGAACATATACCCGTCGTCCTATC 59.301 45.833 0.00 0.00 0.00 2.08
856 874 4.298103 ACATATACCCGTCGTCCTATCT 57.702 45.455 0.00 0.00 0.00 1.98
857 875 5.426689 ACATATACCCGTCGTCCTATCTA 57.573 43.478 0.00 0.00 0.00 1.98
858 876 5.999044 ACATATACCCGTCGTCCTATCTAT 58.001 41.667 0.00 0.00 0.00 1.98
859 877 6.054295 ACATATACCCGTCGTCCTATCTATC 58.946 44.000 0.00 0.00 0.00 2.08
860 878 4.840716 ATACCCGTCGTCCTATCTATCT 57.159 45.455 0.00 0.00 0.00 1.98
861 879 3.056588 ACCCGTCGTCCTATCTATCTC 57.943 52.381 0.00 0.00 0.00 2.75
862 880 2.290197 ACCCGTCGTCCTATCTATCTCC 60.290 54.545 0.00 0.00 0.00 3.71
863 881 2.358015 CCGTCGTCCTATCTATCTCCC 58.642 57.143 0.00 0.00 0.00 4.30
864 882 2.358015 CGTCGTCCTATCTATCTCCCC 58.642 57.143 0.00 0.00 0.00 4.81
865 883 2.290134 CGTCGTCCTATCTATCTCCCCA 60.290 54.545 0.00 0.00 0.00 4.96
883 901 1.067354 CCAGCCAAACAAGCATCTTCC 60.067 52.381 0.00 0.00 0.00 3.46
902 920 3.881952 ATCGTGTTGCTGCCTCGCA 62.882 57.895 0.00 0.00 38.31 5.10
967 991 4.489771 CCGCCCGGCTCTTCCATT 62.490 66.667 8.05 0.00 34.01 3.16
968 992 2.897350 CGCCCGGCTCTTCCATTC 60.897 66.667 8.05 0.00 34.01 2.67
971 995 1.078426 CCCGGCTCTTCCATTCGTT 60.078 57.895 0.00 0.00 34.01 3.85
985 1009 2.358247 CGTTCCCAACCCACCTCG 60.358 66.667 0.00 0.00 0.00 4.63
1031 1055 4.081142 GCTCTCCTCTCCTTTAAAAGCTCT 60.081 45.833 0.00 0.00 0.00 4.09
1051 1076 0.756294 TCCGAGCTTTCACCTCACAA 59.244 50.000 0.00 0.00 0.00 3.33
1065 1090 0.745128 TCACAACACAACACGACCCC 60.745 55.000 0.00 0.00 0.00 4.95
1075 1100 3.703127 ACGACCCCCGCTTCTTCC 61.703 66.667 0.00 0.00 43.32 3.46
1076 1101 3.702048 CGACCCCCGCTTCTTCCA 61.702 66.667 0.00 0.00 0.00 3.53
1082 1107 2.225167 ACCCCCGCTTCTTCCAATTAAA 60.225 45.455 0.00 0.00 0.00 1.52
1103 1128 0.620556 CTTGCTTGCTCCCCTCCTTA 59.379 55.000 0.00 0.00 0.00 2.69
1106 1131 1.064463 TGCTTGCTCCCCTCCTTATTG 60.064 52.381 0.00 0.00 0.00 1.90
1203 1238 0.321387 GGAACTCCCGGGAACAAGAC 60.321 60.000 26.68 12.31 0.00 3.01
1210 1245 2.359975 GGGAACAAGACAGGCCCG 60.360 66.667 0.00 0.00 0.00 6.13
1228 1263 2.607282 CCCGGGAGAAACGAATCGATAG 60.607 54.545 18.48 0.00 0.00 2.08
1229 1264 2.607282 CCGGGAGAAACGAATCGATAGG 60.607 54.545 10.55 0.00 0.00 2.57
1230 1265 2.607282 CGGGAGAAACGAATCGATAGGG 60.607 54.545 10.55 0.00 0.00 3.53
1232 1267 3.552478 GGGAGAAACGAATCGATAGGGAC 60.552 52.174 10.55 0.00 0.00 4.46
1233 1268 3.318557 GGAGAAACGAATCGATAGGGACT 59.681 47.826 10.55 0.00 46.37 3.85
1234 1269 4.202131 GGAGAAACGAATCGATAGGGACTT 60.202 45.833 10.55 0.00 41.75 3.01
1235 1270 4.683832 AGAAACGAATCGATAGGGACTTG 58.316 43.478 10.55 0.00 41.75 3.16
1261 1299 0.390735 GCTAAAGAAACCGCCCGAGA 60.391 55.000 0.00 0.00 0.00 4.04
1322 1366 4.680237 TCTGTCCTTGCCCGTGCG 62.680 66.667 0.00 0.00 41.78 5.34
1370 1414 3.604582 CAGAAACTAAGAGAGCAAGGGG 58.395 50.000 0.00 0.00 0.00 4.79
1371 1415 3.008485 CAGAAACTAAGAGAGCAAGGGGT 59.992 47.826 0.00 0.00 0.00 4.95
1394 1438 2.355837 AAGAAACTCTCGCGCGCA 60.356 55.556 32.61 17.14 0.00 6.09
1416 1460 3.047877 CCGCCGCCGAACTCTTTT 61.048 61.111 0.00 0.00 36.29 2.27
1665 1755 0.469892 TCCATCCATCGCCTCTGCTA 60.470 55.000 0.00 0.00 34.43 3.49
1675 1767 0.924090 GCCTCTGCTATGTTTCGTCG 59.076 55.000 0.00 0.00 33.53 5.12
1677 1769 1.629013 CTCTGCTATGTTTCGTCGCA 58.371 50.000 0.00 0.00 0.00 5.10
1678 1770 1.992667 CTCTGCTATGTTTCGTCGCAA 59.007 47.619 0.00 0.00 0.00 4.85
1681 1773 3.093574 CTGCTATGTTTCGTCGCAATTG 58.906 45.455 0.00 0.00 0.00 2.32
1682 1774 2.482336 TGCTATGTTTCGTCGCAATTGT 59.518 40.909 7.40 0.00 0.00 2.71
1714 1810 3.120511 GCTCTGTTCCACGTGAAATTCTC 60.121 47.826 19.30 0.00 33.94 2.87
1828 1947 9.354673 TCTTCATCAAGAATTTAAACAGGAACT 57.645 29.630 0.00 0.00 35.57 3.01
1858 1977 2.050691 CCGGCGTTTCAAACAGATTTG 58.949 47.619 6.01 0.00 45.67 2.32
1927 2065 3.172106 TTCGTTGGCCCTGTCCCA 61.172 61.111 0.00 0.00 0.00 4.37
1960 2101 3.621715 CCTGCCGTAAGAAATAGTCCAAC 59.378 47.826 0.00 0.00 43.02 3.77
2039 2208 7.393515 AGAATAAATCAAACGGCTTCCTAAACT 59.606 33.333 0.00 0.00 0.00 2.66
2041 2210 6.887626 AAATCAAACGGCTTCCTAAACTAA 57.112 33.333 0.00 0.00 0.00 2.24
2043 2212 5.678132 TCAAACGGCTTCCTAAACTAAAC 57.322 39.130 0.00 0.00 0.00 2.01
2045 2214 5.237779 TCAAACGGCTTCCTAAACTAAACTG 59.762 40.000 0.00 0.00 0.00 3.16
2069 2248 0.611714 GTTCAAACCTCTCCCCGCTA 59.388 55.000 0.00 0.00 0.00 4.26
2083 2263 1.608590 CCCGCTATTTGCCTAACCATG 59.391 52.381 0.00 0.00 38.78 3.66
2086 2266 3.130340 CCGCTATTTGCCTAACCATGTTT 59.870 43.478 0.00 0.00 38.78 2.83
2087 2267 4.381505 CCGCTATTTGCCTAACCATGTTTT 60.382 41.667 0.00 0.00 38.78 2.43
2088 2268 5.167845 CGCTATTTGCCTAACCATGTTTTT 58.832 37.500 0.00 0.00 38.78 1.94
2169 2362 3.942748 ACCGAGTTTTTCTTGTTACTGCA 59.057 39.130 0.00 0.00 0.00 4.41
2289 2531 8.604035 CGTGCTAGAAAATGTACAGAAACATAT 58.396 33.333 0.33 0.00 39.16 1.78
2290 2532 9.922305 GTGCTAGAAAATGTACAGAAACATATC 57.078 33.333 0.33 0.00 39.16 1.63
2374 2966 3.331150 CAATGCCAAACGGAGTAGTGTA 58.669 45.455 0.00 0.00 45.00 2.90
2377 2969 2.288579 TGCCAAACGGAGTAGTGTAGTG 60.289 50.000 0.00 0.00 45.00 2.74
2379 2971 3.368116 GCCAAACGGAGTAGTGTAGTGAT 60.368 47.826 0.00 0.00 45.00 3.06
2380 2972 4.174009 CCAAACGGAGTAGTGTAGTGATG 58.826 47.826 0.00 0.00 45.00 3.07
2381 2973 4.321750 CCAAACGGAGTAGTGTAGTGATGT 60.322 45.833 0.00 0.00 45.00 3.06
2382 2974 5.227908 CAAACGGAGTAGTGTAGTGATGTT 58.772 41.667 0.00 0.00 45.00 2.71
2383 2975 4.436242 ACGGAGTAGTGTAGTGATGTTG 57.564 45.455 0.00 0.00 41.94 3.33
2384 2976 3.192844 ACGGAGTAGTGTAGTGATGTTGG 59.807 47.826 0.00 0.00 41.94 3.77
2385 2977 3.522553 GGAGTAGTGTAGTGATGTTGGC 58.477 50.000 0.00 0.00 0.00 4.52
2388 2980 1.362224 AGTGTAGTGATGTTGGCCCT 58.638 50.000 0.00 0.00 0.00 5.19
2435 3030 5.339008 AATTAGTGATACGTGGCTTCTCA 57.661 39.130 0.00 0.00 0.00 3.27
2499 3094 1.280206 GCTGCTTGCTTTTGGCTTCG 61.280 55.000 0.00 0.00 42.39 3.79
2519 3246 3.009723 CGACAGTACTCCATGCCAAAAT 58.990 45.455 0.00 0.00 0.00 1.82
2535 3264 5.156804 CCAAAATGGCATCTTACTACGTC 57.843 43.478 0.00 0.00 0.00 4.34
2693 3768 6.267471 TGAATACAGGTTGCAAGAGGAAAAAT 59.733 34.615 0.00 0.00 0.00 1.82
2787 4747 3.754323 ACTCCTCGACTAGTCAAACTGAG 59.246 47.826 22.37 17.87 0.00 3.35
2791 4751 4.098055 TCGACTAGTCAAACTGAGATGC 57.902 45.455 22.37 0.00 0.00 3.91
2833 4831 1.524621 GGATGCCAGGATGACACCG 60.525 63.158 0.00 0.00 39.69 4.94
2925 4923 4.578898 TCGTCGCTGTTGTGCCGT 62.579 61.111 0.00 0.00 0.00 5.68
3112 5110 2.422479 CTGTCGATCGTCAAGAAGGGTA 59.578 50.000 15.94 0.00 0.00 3.69
3237 5235 2.211250 ACCTGCCTCGTAAGTACTCA 57.789 50.000 0.00 0.00 39.48 3.41
3239 5237 2.093106 CCTGCCTCGTAAGTACTCAGT 58.907 52.381 0.00 0.00 39.48 3.41
3249 5247 4.386954 CGTAAGTACTCAGTGACAGACGTA 59.613 45.833 0.00 0.00 0.00 3.57
3302 5342 3.568538 GTTGCTCACTCGCATTCAAATT 58.431 40.909 0.00 0.00 40.04 1.82
3494 5534 2.636412 CGGAGGTGACGCAGAGGAA 61.636 63.158 0.00 0.00 0.00 3.36
3558 5602 3.193479 GGGTAAGGGACAAATTCTTGCTG 59.807 47.826 0.00 0.00 35.84 4.41
3561 5605 3.228188 AGGGACAAATTCTTGCTGTCA 57.772 42.857 8.94 0.00 41.03 3.58
3567 5680 5.048083 GGACAAATTCTTGCTGTCAATGGTA 60.048 40.000 8.94 0.00 41.03 3.25
3571 5684 6.743575 AATTCTTGCTGTCAATGGTAGTAC 57.256 37.500 0.00 0.00 0.00 2.73
3590 5703 4.814771 AGTACCATTTTTATGCGCTCTACC 59.185 41.667 9.73 0.00 0.00 3.18
3640 5753 1.147376 CAGGTTTGGGACGTGGTCA 59.853 57.895 0.00 0.00 39.78 4.02
3808 5921 1.082038 CACTCGCCGCTATCGTAGG 60.082 63.158 0.00 0.00 0.00 3.18
3850 5966 0.951040 GCCGTGTGGACAAGGAAGAG 60.951 60.000 15.02 0.00 46.41 2.85
3883 6002 1.135333 CCGTCCTTCTCTTGGTAGAGC 59.865 57.143 0.00 0.00 46.24 4.09
3900 6019 4.736631 CGAGTGCAGACGTCGCGA 62.737 66.667 21.32 3.71 0.00 5.87
3916 6040 1.551145 GCGATCAGAGACCGAAAGAC 58.449 55.000 0.00 0.00 0.00 3.01
3918 6042 1.532090 CGATCAGAGACCGAAAGACCG 60.532 57.143 0.00 0.00 0.00 4.79
4032 6163 1.226717 GAGGACGACATGCTCCGAC 60.227 63.158 9.28 3.82 39.84 4.79
4065 6199 1.449246 AGCTGCTGCGATCTGAACC 60.449 57.895 10.14 0.00 45.42 3.62
4070 6209 1.215382 CTGCGATCTGAACCGTGGA 59.785 57.895 0.00 0.00 0.00 4.02
4109 6249 1.842562 AGGCATCCTACAGTGAATGCT 59.157 47.619 17.41 7.20 35.57 3.79
4110 6250 1.945394 GGCATCCTACAGTGAATGCTG 59.055 52.381 17.41 0.00 41.92 4.41
4111 6251 2.420547 GGCATCCTACAGTGAATGCTGA 60.421 50.000 17.41 0.50 39.62 4.26
4112 6252 3.273434 GCATCCTACAGTGAATGCTGAA 58.727 45.455 0.00 0.00 39.62 3.02
4113 6253 3.881688 GCATCCTACAGTGAATGCTGAAT 59.118 43.478 0.00 0.00 39.62 2.57
4114 6254 4.261072 GCATCCTACAGTGAATGCTGAATG 60.261 45.833 0.00 0.85 39.62 2.67
4115 6255 3.273434 TCCTACAGTGAATGCTGAATGC 58.727 45.455 0.00 0.00 39.62 3.56
4190 6337 2.046411 TGTATGGCGTGCAGGTGG 60.046 61.111 8.40 0.00 0.00 4.61
4244 6396 1.836391 CATGGGAGGGCCGTTGATA 59.164 57.895 0.00 0.00 33.83 2.15
4263 6417 9.586150 CGTTGATATTTCTTTAAGATTCGATGG 57.414 33.333 0.00 0.00 0.00 3.51
4264 6418 9.387123 GTTGATATTTCTTTAAGATTCGATGGC 57.613 33.333 0.00 0.00 0.00 4.40
4265 6419 8.675705 TGATATTTCTTTAAGATTCGATGGCA 57.324 30.769 0.00 0.00 0.00 4.92
4275 6430 2.565210 TTCGATGGCAATGCATTGAC 57.435 45.000 37.36 35.74 46.03 3.18
4283 6438 2.594321 GCAATGCATTGACGCTGTTTA 58.406 42.857 37.36 0.00 40.14 2.01
4349 6504 3.673052 GCTTCACCATCGCATGCTTTTTA 60.673 43.478 17.13 0.00 0.00 1.52
4351 6506 4.717233 TCACCATCGCATGCTTTTTATT 57.283 36.364 17.13 0.00 0.00 1.40
4433 6590 8.054152 TCAGTATGCATATTTGTGTTTGTGAT 57.946 30.769 10.16 0.00 34.76 3.06
4614 6807 6.804677 TGTATGAAACAAGTTTGAAGCATGT 58.195 32.000 2.45 0.00 34.29 3.21
4623 6816 6.421801 ACAAGTTTGAAGCATGTTGATTTAGC 59.578 34.615 0.00 0.00 0.00 3.09
4716 6916 8.977505 ACATAATTGTGCAAACTGAATGTAAAC 58.022 29.630 1.57 0.00 33.85 2.01
4740 6940 9.885934 AACCAAACTTTTAATTCAACAAACAAC 57.114 25.926 0.00 0.00 0.00 3.32
4742 6942 9.323963 CCAAACTTTTAATTCAACAAACAACAC 57.676 29.630 0.00 0.00 0.00 3.32
4754 6954 6.853872 TCAACAAACAACACGCATCTATTTAC 59.146 34.615 0.00 0.00 0.00 2.01
4777 6977 6.226787 ACTTGAATGAAACTCAGTGAGTAGG 58.773 40.000 25.71 11.27 42.59 3.18
4781 6981 8.311395 TGAATGAAACTCAGTGAGTAGGATAT 57.689 34.615 25.71 12.92 42.59 1.63
4785 6985 8.311395 TGAAACTCAGTGAGTAGGATATCATT 57.689 34.615 25.71 12.84 42.59 2.57
4786 6986 9.421399 TGAAACTCAGTGAGTAGGATATCATTA 57.579 33.333 25.71 1.23 42.59 1.90
4790 6990 9.073475 ACTCAGTGAGTAGGATATCATTAGAAC 57.927 37.037 24.36 0.00 41.51 3.01
4812 7014 6.312399 ACGTATGCTAGATGAGAGAGAAAG 57.688 41.667 0.00 0.00 0.00 2.62
4813 7015 5.240623 ACGTATGCTAGATGAGAGAGAAAGG 59.759 44.000 0.00 0.00 0.00 3.11
4838 7040 2.113860 AAATGATGTCAGTGGTCCCG 57.886 50.000 0.00 0.00 0.00 5.14
4842 7044 3.589654 ATGTCAGTGGTCCCGCACG 62.590 63.158 0.00 0.00 0.00 5.34
4847 7049 2.739671 GTGGTCCCGCACGGTAAC 60.740 66.667 8.49 5.87 0.00 2.50
4908 7111 2.099263 TGGTAGAAAATCCTCTCTCGCG 59.901 50.000 0.00 0.00 0.00 5.87
4909 7112 2.099427 GGTAGAAAATCCTCTCTCGCGT 59.901 50.000 5.77 0.00 0.00 6.01
4910 7113 2.285827 AGAAAATCCTCTCTCGCGTG 57.714 50.000 5.77 3.13 0.00 5.34
4911 7114 0.647925 GAAAATCCTCTCTCGCGTGC 59.352 55.000 5.77 0.00 0.00 5.34
4912 7115 0.037326 AAAATCCTCTCTCGCGTGCA 60.037 50.000 5.77 0.00 0.00 4.57
4913 7116 0.459237 AAATCCTCTCTCGCGTGCAG 60.459 55.000 5.77 2.94 0.00 4.41
4914 7117 2.290122 AATCCTCTCTCGCGTGCAGG 62.290 60.000 5.77 12.45 0.00 4.85
4915 7118 3.753434 CCTCTCTCGCGTGCAGGT 61.753 66.667 5.77 0.00 0.00 4.00
4989 7239 0.819582 CGACATACCACGTACCCCTT 59.180 55.000 0.00 0.00 0.00 3.95
4998 7248 1.142936 ACGTACCCCTTTTCCCTGTT 58.857 50.000 0.00 0.00 0.00 3.16
5015 7299 4.577693 CCCTGTTCTCATCACATTACATGG 59.422 45.833 0.00 0.00 33.60 3.66
5049 7333 6.045318 GTGCTTATCATGTCAGATGTACTGT 58.955 40.000 0.00 0.00 45.86 3.55
5051 7335 7.706607 GTGCTTATCATGTCAGATGTACTGTTA 59.293 37.037 0.00 0.00 45.86 2.41
5053 7337 7.169982 GCTTATCATGTCAGATGTACTGTTACC 59.830 40.741 0.00 0.00 45.86 2.85
5055 7339 5.720202 TCATGTCAGATGTACTGTTACCAC 58.280 41.667 0.00 0.00 45.86 4.16
5058 7342 3.514309 GTCAGATGTACTGTTACCACCCT 59.486 47.826 0.00 0.00 45.86 4.34
5059 7343 3.767673 TCAGATGTACTGTTACCACCCTC 59.232 47.826 0.00 0.00 45.86 4.30
5060 7344 3.769844 CAGATGTACTGTTACCACCCTCT 59.230 47.826 0.00 0.00 41.30 3.69
5061 7345 4.024670 AGATGTACTGTTACCACCCTCTC 58.975 47.826 0.00 0.00 0.00 3.20
5062 7346 3.537795 TGTACTGTTACCACCCTCTCT 57.462 47.619 0.00 0.00 0.00 3.10
5063 7347 4.662966 TGTACTGTTACCACCCTCTCTA 57.337 45.455 0.00 0.00 0.00 2.43
5064 7348 4.338879 TGTACTGTTACCACCCTCTCTAC 58.661 47.826 0.00 0.00 0.00 2.59
5065 7349 3.537795 ACTGTTACCACCCTCTCTACA 57.462 47.619 0.00 0.00 0.00 2.74
5066 7350 3.163467 ACTGTTACCACCCTCTCTACAC 58.837 50.000 0.00 0.00 0.00 2.90
5067 7351 2.163815 CTGTTACCACCCTCTCTACACG 59.836 54.545 0.00 0.00 0.00 4.49
5068 7352 1.135170 GTTACCACCCTCTCTACACGC 60.135 57.143 0.00 0.00 0.00 5.34
5069 7353 0.330604 TACCACCCTCTCTACACGCT 59.669 55.000 0.00 0.00 0.00 5.07
5070 7354 0.966370 ACCACCCTCTCTACACGCTC 60.966 60.000 0.00 0.00 0.00 5.03
5072 7356 1.107114 CACCCTCTCTACACGCTCAT 58.893 55.000 0.00 0.00 0.00 2.90
5073 7357 1.107114 ACCCTCTCTACACGCTCATG 58.893 55.000 0.00 0.00 0.00 3.07
5081 7365 4.686091 TCTCTACACGCTCATGAAAAACAG 59.314 41.667 0.00 0.00 0.00 3.16
5089 7373 4.631377 CGCTCATGAAAAACAGATCACCTA 59.369 41.667 0.00 0.00 0.00 3.08
5092 7376 6.150140 GCTCATGAAAAACAGATCACCTACTT 59.850 38.462 0.00 0.00 0.00 2.24
5093 7377 7.625185 GCTCATGAAAAACAGATCACCTACTTC 60.625 40.741 0.00 0.00 0.00 3.01
5094 7378 6.368791 TCATGAAAAACAGATCACCTACTTCG 59.631 38.462 0.00 0.00 0.00 3.79
5095 7379 4.451096 TGAAAAACAGATCACCTACTTCGC 59.549 41.667 0.00 0.00 0.00 4.70
5096 7380 3.678056 AAACAGATCACCTACTTCGCA 57.322 42.857 0.00 0.00 0.00 5.10
5097 7381 2.949451 ACAGATCACCTACTTCGCAG 57.051 50.000 0.00 0.00 0.00 5.18
5098 7382 2.447443 ACAGATCACCTACTTCGCAGA 58.553 47.619 0.00 0.00 0.00 4.26
5099 7383 3.027412 ACAGATCACCTACTTCGCAGAT 58.973 45.455 0.00 0.00 35.04 2.90
5100 7384 3.449018 ACAGATCACCTACTTCGCAGATT 59.551 43.478 0.00 0.00 35.04 2.40
5101 7385 3.801050 CAGATCACCTACTTCGCAGATTG 59.199 47.826 0.00 0.00 35.04 2.67
5102 7386 3.449018 AGATCACCTACTTCGCAGATTGT 59.551 43.478 0.00 0.00 35.04 2.71
5103 7387 4.645136 AGATCACCTACTTCGCAGATTGTA 59.355 41.667 0.00 0.00 35.04 2.41
5104 7388 4.794278 TCACCTACTTCGCAGATTGTAA 57.206 40.909 0.00 0.00 35.04 2.41
5105 7389 4.744570 TCACCTACTTCGCAGATTGTAAG 58.255 43.478 0.00 0.00 35.04 2.34
5114 7398 7.965045 ACTTCGCAGATTGTAAGATTAGAAAC 58.035 34.615 0.00 0.00 35.04 2.78
5115 7399 6.569228 TCGCAGATTGTAAGATTAGAAACG 57.431 37.500 0.00 0.00 0.00 3.60
5138 7422 2.664436 GCCGATAACGCCCATACGC 61.664 63.158 0.00 0.00 38.29 4.42
5148 7432 4.447544 CCATACGCGTGGGCATTA 57.552 55.556 24.59 0.00 39.92 1.90
5218 7503 1.153353 CGTCTACGTGTGGGCAAAAT 58.847 50.000 0.00 0.00 34.11 1.82
5263 7557 1.667154 CCTCGCGATCCCTCTCACAA 61.667 60.000 10.36 0.00 0.00 3.33
5326 7621 1.050988 TCAGGCCTCCTACCTCATGC 61.051 60.000 0.00 0.00 34.42 4.06
5474 7794 2.493278 GTTGCCATGGTTGCTCAACTAT 59.507 45.455 19.25 8.91 42.16 2.12
5498 7819 0.035630 GCCATCTCAGGTCAAGTGCT 60.036 55.000 0.00 0.00 0.00 4.40
5504 7825 5.426504 CATCTCAGGTCAAGTGCTAGATTT 58.573 41.667 0.00 0.00 0.00 2.17
5508 7832 5.423015 TCAGGTCAAGTGCTAGATTTCATC 58.577 41.667 0.00 0.00 0.00 2.92
5560 7885 2.826725 GGTCTGGTCTACTACAGTTGCT 59.173 50.000 0.00 0.00 36.17 3.91
5794 8125 6.518369 CGATGGTATCTTTAGGAGTTGCCATA 60.518 42.308 6.68 0.00 45.19 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 8 1.476235 GCAAAACAACACGTTCGGGC 61.476 55.000 0.00 0.00 36.59 6.13
14 16 3.715628 AGAGACATGGCAAAACAACAC 57.284 42.857 0.00 0.00 0.00 3.32
71 75 6.478512 TTTGAAAACCTTAAGAGTTGCCAT 57.521 33.333 3.36 0.00 0.00 4.40
81 85 8.207545 ACAGTTGCCATTATTTGAAAACCTTAA 58.792 29.630 0.00 0.00 0.00 1.85
96 100 4.760204 GTCTGGTTTACTACAGTTGCCATT 59.240 41.667 0.00 0.00 36.17 3.16
126 130 2.413837 ACTAACACTAAGCAGTTGCCG 58.586 47.619 0.00 0.00 43.38 5.69
178 182 8.370266 TGTATGGTCTGGTTTACTATAGTTGT 57.630 34.615 11.40 0.00 0.00 3.32
257 263 0.388134 CATGGTTGCTCAACTGCAGC 60.388 55.000 15.27 0.00 44.27 5.25
546 557 4.196971 GTTTTGTGTGGTGTCTAAGAGGT 58.803 43.478 0.00 0.00 0.00 3.85
651 662 8.928270 AGTTGTTACGGACATCTAAAGATTAG 57.072 34.615 3.76 0.00 36.71 1.73
687 699 0.674534 GCCGGTAGAATGGACGAGAT 59.325 55.000 1.90 0.00 0.00 2.75
692 704 1.067582 CGAGGCCGGTAGAATGGAC 59.932 63.158 1.90 0.00 0.00 4.02
738 754 2.203195 GTGCCATGATGCCGCCTA 60.203 61.111 0.00 0.00 0.00 3.93
790 806 1.217882 CGTTCCGTCAACAGCTTTCT 58.782 50.000 0.00 0.00 34.20 2.52
831 847 2.621998 AGGACGACGGGTATATGTTCTG 59.378 50.000 0.00 0.00 0.00 3.02
853 871 2.492025 TGTTTGGCTGGGGAGATAGAT 58.508 47.619 0.00 0.00 0.00 1.98
854 872 1.965414 TGTTTGGCTGGGGAGATAGA 58.035 50.000 0.00 0.00 0.00 1.98
855 873 2.648059 CTTGTTTGGCTGGGGAGATAG 58.352 52.381 0.00 0.00 0.00 2.08
856 874 1.340991 GCTTGTTTGGCTGGGGAGATA 60.341 52.381 0.00 0.00 0.00 1.98
857 875 0.613012 GCTTGTTTGGCTGGGGAGAT 60.613 55.000 0.00 0.00 0.00 2.75
858 876 1.228552 GCTTGTTTGGCTGGGGAGA 60.229 57.895 0.00 0.00 0.00 3.71
859 877 0.901580 ATGCTTGTTTGGCTGGGGAG 60.902 55.000 0.00 0.00 0.00 4.30
860 878 0.899717 GATGCTTGTTTGGCTGGGGA 60.900 55.000 0.00 0.00 0.00 4.81
861 879 0.901580 AGATGCTTGTTTGGCTGGGG 60.902 55.000 0.00 0.00 0.00 4.96
862 880 0.971386 AAGATGCTTGTTTGGCTGGG 59.029 50.000 0.00 0.00 0.00 4.45
863 881 1.067354 GGAAGATGCTTGTTTGGCTGG 60.067 52.381 0.00 0.00 0.00 4.85
864 882 1.614903 TGGAAGATGCTTGTTTGGCTG 59.385 47.619 0.00 0.00 0.00 4.85
865 883 1.999648 TGGAAGATGCTTGTTTGGCT 58.000 45.000 0.00 0.00 0.00 4.75
883 901 2.780643 CGAGGCAGCAACACGATG 59.219 61.111 0.00 0.00 0.00 3.84
902 920 0.321653 GAAACATGCAGACCGAGGGT 60.322 55.000 0.00 0.00 39.44 4.34
964 988 0.251165 AGGTGGGTTGGGAACGAATG 60.251 55.000 0.00 0.00 0.00 2.67
965 989 0.037734 GAGGTGGGTTGGGAACGAAT 59.962 55.000 0.00 0.00 0.00 3.34
966 990 1.452801 GAGGTGGGTTGGGAACGAA 59.547 57.895 0.00 0.00 0.00 3.85
967 991 2.874664 CGAGGTGGGTTGGGAACGA 61.875 63.158 0.00 0.00 0.00 3.85
968 992 2.358247 CGAGGTGGGTTGGGAACG 60.358 66.667 0.00 0.00 0.00 3.95
971 995 1.460689 AAGACGAGGTGGGTTGGGA 60.461 57.895 0.00 0.00 0.00 4.37
985 1009 1.276705 GAGAGGTGAGTTGGGGAAGAC 59.723 57.143 0.00 0.00 0.00 3.01
1051 1076 4.922026 GCGGGGGTCGTGTTGTGT 62.922 66.667 0.00 0.00 41.72 3.72
1065 1090 4.485163 CAAGGTTTAATTGGAAGAAGCGG 58.515 43.478 0.00 0.00 0.00 5.52
1075 1100 3.588955 GGGAGCAAGCAAGGTTTAATTG 58.411 45.455 0.00 0.00 0.00 2.32
1076 1101 2.567169 GGGGAGCAAGCAAGGTTTAATT 59.433 45.455 0.00 0.00 0.00 1.40
1082 1107 2.759795 GAGGGGAGCAAGCAAGGT 59.240 61.111 0.00 0.00 0.00 3.50
1103 1128 7.491696 GTCGATCAGGTTAACTTACTAAGCAAT 59.508 37.037 5.42 0.00 32.78 3.56
1106 1131 5.747675 GGTCGATCAGGTTAACTTACTAAGC 59.252 44.000 5.42 0.00 0.00 3.09
1170 1198 3.759086 GGGAGTTCCTTTGGATTGAAGAC 59.241 47.826 0.00 0.00 35.95 3.01
1203 1238 2.536997 ATTCGTTTCTCCCGGGCCTG 62.537 60.000 18.49 3.88 0.00 4.85
1210 1245 2.626743 TCCCTATCGATTCGTTTCTCCC 59.373 50.000 1.71 0.00 0.00 4.30
1230 1265 5.120363 CGGTTTCTTTAGCTTAGGACAAGTC 59.880 44.000 0.00 0.00 0.00 3.01
1232 1267 4.142881 GCGGTTTCTTTAGCTTAGGACAAG 60.143 45.833 0.00 0.00 0.00 3.16
1233 1268 3.749609 GCGGTTTCTTTAGCTTAGGACAA 59.250 43.478 0.00 0.00 0.00 3.18
1234 1269 3.332034 GCGGTTTCTTTAGCTTAGGACA 58.668 45.455 0.00 0.00 0.00 4.02
1235 1270 2.676839 GGCGGTTTCTTTAGCTTAGGAC 59.323 50.000 0.00 0.00 0.00 3.85
1261 1299 2.043801 GGTGGATAGGATAGGGAGCTCT 59.956 54.545 14.64 0.00 0.00 4.09
1400 1444 2.173382 CAAAAGAGTTCGGCGGCG 59.827 61.111 27.15 27.15 0.00 6.46
1401 1445 1.792118 AACCAAAAGAGTTCGGCGGC 61.792 55.000 7.21 0.00 0.00 6.53
1402 1446 0.040425 CAACCAAAAGAGTTCGGCGG 60.040 55.000 7.21 0.00 0.00 6.13
1403 1447 0.661020 ACAACCAAAAGAGTTCGGCG 59.339 50.000 0.00 0.00 0.00 6.46
1404 1448 2.863401 AACAACCAAAAGAGTTCGGC 57.137 45.000 0.00 0.00 0.00 5.54
1405 1449 4.632538 AGAAACAACCAAAAGAGTTCGG 57.367 40.909 0.00 0.00 0.00 4.30
1406 1450 5.288472 CCAAAGAAACAACCAAAAGAGTTCG 59.712 40.000 0.00 0.00 0.00 3.95
1407 1451 5.580691 CCCAAAGAAACAACCAAAAGAGTTC 59.419 40.000 0.00 0.00 0.00 3.01
1408 1452 5.487433 CCCAAAGAAACAACCAAAAGAGTT 58.513 37.500 0.00 0.00 0.00 3.01
1409 1453 4.081142 CCCCAAAGAAACAACCAAAAGAGT 60.081 41.667 0.00 0.00 0.00 3.24
1410 1454 4.081142 ACCCCAAAGAAACAACCAAAAGAG 60.081 41.667 0.00 0.00 0.00 2.85
1411 1455 3.841255 ACCCCAAAGAAACAACCAAAAGA 59.159 39.130 0.00 0.00 0.00 2.52
1412 1456 4.214986 ACCCCAAAGAAACAACCAAAAG 57.785 40.909 0.00 0.00 0.00 2.27
1416 1460 2.312390 GCTACCCCAAAGAAACAACCA 58.688 47.619 0.00 0.00 0.00 3.67
1665 1755 3.058293 ACATGACAATTGCGACGAAACAT 60.058 39.130 5.05 0.00 0.00 2.71
1675 1767 3.857665 CAGAGCATCAACATGACAATTGC 59.142 43.478 5.05 1.99 37.82 3.56
1677 1769 5.336213 GGAACAGAGCATCAACATGACAATT 60.336 40.000 0.00 0.00 37.82 2.32
1678 1770 4.157289 GGAACAGAGCATCAACATGACAAT 59.843 41.667 0.00 0.00 37.82 2.71
1681 1773 3.076621 TGGAACAGAGCATCAACATGAC 58.923 45.455 0.00 0.00 37.82 3.06
1682 1774 3.076621 GTGGAACAGAGCATCAACATGA 58.923 45.455 0.00 0.00 41.80 3.07
1750 1853 2.425312 CGAGCTCCACAAGATACTCTGT 59.575 50.000 8.47 0.00 0.00 3.41
1828 1947 1.201647 TGAAACGCCGGAACAAAACAA 59.798 42.857 5.05 0.00 0.00 2.83
1887 2022 5.387788 ACCATGACACCATGCACAATATAT 58.612 37.500 0.00 0.00 46.73 0.86
1888 2023 4.790937 ACCATGACACCATGCACAATATA 58.209 39.130 0.00 0.00 46.73 0.86
1927 2065 2.939760 TACGGCAGGGATGGGTCGAT 62.940 60.000 0.00 0.00 35.79 3.59
1960 2101 0.539051 CCCAAGTACTGCCTCCTCTG 59.461 60.000 0.00 0.00 0.00 3.35
2095 2278 8.652463 ACACCTCGTAAAAACAAAGAAAAATTG 58.348 29.630 0.00 0.00 0.00 2.32
2113 2306 3.722728 AGACGAACTAAAACACCTCGT 57.277 42.857 0.00 0.00 44.80 4.18
2169 2362 8.196378 AGTCTAAGTTGTATTCAAGACTTCCT 57.804 34.615 0.00 0.00 34.17 3.36
2254 2496 7.851963 TGTACATTTTCTAGCACGTAACAAAAC 59.148 33.333 0.00 0.00 0.00 2.43
2341 2855 4.201773 CGTTTGGCATTGCTCGTTAGATTA 60.202 41.667 8.82 0.00 0.00 1.75
2374 2966 5.105351 GCTTAATTAAAGGGCCAACATCACT 60.105 40.000 6.18 0.00 35.58 3.41
2377 2969 5.337578 TGCTTAATTAAAGGGCCAACATC 57.662 39.130 6.18 0.00 35.58 3.06
2379 2971 3.513515 CCTGCTTAATTAAAGGGCCAACA 59.486 43.478 6.18 0.00 35.58 3.33
2380 2972 3.678806 GCCTGCTTAATTAAAGGGCCAAC 60.679 47.826 14.92 0.00 36.84 3.77
2381 2973 2.499693 GCCTGCTTAATTAAAGGGCCAA 59.500 45.455 14.92 0.00 36.84 4.52
2382 2974 2.107366 GCCTGCTTAATTAAAGGGCCA 58.893 47.619 14.92 0.00 36.84 5.36
2383 2975 2.362397 GAGCCTGCTTAATTAAAGGGCC 59.638 50.000 21.71 0.00 41.18 5.80
2384 2976 3.023832 TGAGCCTGCTTAATTAAAGGGC 58.976 45.455 19.54 19.54 40.80 5.19
2385 2977 4.096984 CAGTGAGCCTGCTTAATTAAAGGG 59.903 45.833 14.92 10.59 35.58 3.95
2388 2980 5.945784 ACATCAGTGAGCCTGCTTAATTAAA 59.054 36.000 0.00 0.00 41.25 1.52
2435 3030 4.344104 ACATGCTACAAAACCTATGCCTT 58.656 39.130 0.00 0.00 0.00 4.35
2499 3094 3.129287 CCATTTTGGCATGGAGTACTGTC 59.871 47.826 0.00 0.00 46.18 3.51
2660 3593 2.163412 GCAACCTGTATTCATTCGGCAA 59.837 45.455 0.00 0.00 0.00 4.52
2693 3768 1.953686 GCCTGGCCTAATGCGATTTTA 59.046 47.619 7.66 0.00 42.61 1.52
2787 4747 3.190118 CCTGAAGAAAAGGAGTGTGCATC 59.810 47.826 0.00 0.00 36.91 3.91
2791 4751 3.492102 TCCCTGAAGAAAAGGAGTGTG 57.508 47.619 0.00 0.00 36.91 3.82
2833 4831 0.458543 TCGAAGATGCCGCAGAAGAC 60.459 55.000 0.00 0.00 0.00 3.01
2908 4906 4.578898 ACGGCACAACAGCGACGA 62.579 61.111 0.00 0.00 34.64 4.20
3027 5025 3.041627 GAGCTCTTCGTCGACGGCT 62.042 63.158 35.05 32.51 40.29 5.52
3112 5110 1.665679 GTTCGCGATCACCATCATGTT 59.334 47.619 10.88 0.00 0.00 2.71
3237 5235 3.867723 GTGCAGTACGTCTGTCACT 57.132 52.632 20.84 8.11 45.23 3.41
3249 5247 0.250467 AAGCATCCTGAACGTGCAGT 60.250 50.000 22.15 1.38 41.19 4.40
3302 5342 2.821969 GCCTTCTCCTCTGCAAAATCAA 59.178 45.455 0.00 0.00 0.00 2.57
3567 5680 4.814771 GGTAGAGCGCATAAAAATGGTACT 59.185 41.667 11.47 0.00 0.00 2.73
3571 5684 2.602217 GCGGTAGAGCGCATAAAAATGG 60.602 50.000 20.18 0.00 0.00 3.16
3575 5688 3.444751 TGCGGTAGAGCGCATAAAA 57.555 47.368 23.40 1.83 40.67 1.52
3640 5753 2.030562 CACCGCCTCTTCGTTGGT 59.969 61.111 0.00 0.00 0.00 3.67
3800 5913 0.666913 GAAGCTGTCCGCCTACGATA 59.333 55.000 0.00 0.00 43.93 2.92
3850 5966 2.474612 GGACGGGCGTCTCTCTCTC 61.475 68.421 0.00 0.00 44.04 3.20
3883 6002 4.736631 TCGCGACGTCTGCACTCG 62.737 66.667 24.54 13.86 0.00 4.18
3900 6019 0.173708 GCGGTCTTTCGGTCTCTGAT 59.826 55.000 0.00 0.00 0.00 2.90
3916 6040 1.222766 GCTCTCATGATCTGCAGCGG 61.223 60.000 9.47 0.00 0.00 5.52
3918 6042 0.530211 ACGCTCTCATGATCTGCAGC 60.530 55.000 9.47 0.00 0.00 5.25
3949 6078 4.429212 CATGCGTCCCGGTCACGA 62.429 66.667 23.47 11.17 44.60 4.35
3964 6095 4.752879 CGTTCGCCCACCGTCCAT 62.753 66.667 0.00 0.00 38.35 3.41
4109 6249 1.414550 CAATCATGGGCATGGCATTCA 59.585 47.619 22.06 10.37 39.24 2.57
4110 6250 1.689813 TCAATCATGGGCATGGCATTC 59.310 47.619 22.06 4.23 39.24 2.67
4111 6251 1.796017 TCAATCATGGGCATGGCATT 58.204 45.000 22.06 9.09 39.24 3.56
4112 6252 1.899814 GATCAATCATGGGCATGGCAT 59.100 47.619 22.06 9.77 39.24 4.40
4113 6253 1.334160 GATCAATCATGGGCATGGCA 58.666 50.000 22.06 7.72 39.24 4.92
4114 6254 0.242825 CGATCAATCATGGGCATGGC 59.757 55.000 11.56 11.56 39.24 4.40
4115 6255 0.242825 GCGATCAATCATGGGCATGG 59.757 55.000 0.00 0.00 39.24 3.66
4148 6288 2.490903 CCATACGTACCTATCCTTCCGG 59.509 54.545 0.00 0.00 0.00 5.14
4161 6308 0.032403 GCCATACACGCCCATACGTA 59.968 55.000 0.00 0.00 46.34 3.57
4190 6337 2.234414 TGCATGGGAGAATTGCTTTTCC 59.766 45.455 0.00 0.00 37.28 3.13
4244 6396 6.698766 GCATTGCCATCGAATCTTAAAGAAAT 59.301 34.615 0.00 0.00 0.00 2.17
4263 6417 1.421382 AAACAGCGTCAATGCATTGC 58.579 45.000 30.57 23.70 37.68 3.56
4264 6418 5.572211 ACTATAAACAGCGTCAATGCATTG 58.428 37.500 29.75 29.75 39.10 2.82
4265 6419 5.818136 ACTATAAACAGCGTCAATGCATT 57.182 34.783 5.99 5.99 37.31 3.56
4275 6430 6.893958 AGATCTGACAAACTATAAACAGCG 57.106 37.500 0.00 0.00 0.00 5.18
4303 6458 0.520404 GCTTGCATGTGGTCAGTCAG 59.480 55.000 1.14 0.00 0.00 3.51
4304 6459 0.890542 GGCTTGCATGTGGTCAGTCA 60.891 55.000 1.14 0.00 0.00 3.41
4305 6460 0.607489 AGGCTTGCATGTGGTCAGTC 60.607 55.000 1.14 0.00 0.00 3.51
4306 6461 0.692476 TAGGCTTGCATGTGGTCAGT 59.308 50.000 0.00 0.00 0.00 3.41
4410 6567 8.054152 TCATCACAAACACAAATATGCATACT 57.946 30.769 8.99 0.00 0.00 2.12
4413 6570 7.160547 TCTCATCACAAACACAAATATGCAT 57.839 32.000 3.79 3.79 0.00 3.96
4429 6586 8.496751 GTGGTCTAGTTTTAAAGTTCTCATCAC 58.503 37.037 0.00 0.00 0.00 3.06
4433 6590 9.457436 AAAAGTGGTCTAGTTTTAAAGTTCTCA 57.543 29.630 0.19 0.00 39.52 3.27
4693 6893 7.492524 TGGTTTACATTCAGTTTGCACAATTA 58.507 30.769 0.00 0.00 0.00 1.40
4716 6916 9.323963 GTGTTGTTTGTTGAATTAAAAGTTTGG 57.676 29.630 0.00 0.00 0.00 3.28
4727 6927 4.305989 AGATGCGTGTTGTTTGTTGAAT 57.694 36.364 0.00 0.00 0.00 2.57
4735 6935 6.795098 TCAAGTAAATAGATGCGTGTTGTT 57.205 33.333 0.00 0.00 0.00 2.83
4740 6940 8.177663 AGTTTCATTCAAGTAAATAGATGCGTG 58.822 33.333 0.00 0.00 0.00 5.34
4742 6942 8.390354 TGAGTTTCATTCAAGTAAATAGATGCG 58.610 33.333 0.00 0.00 0.00 4.73
4754 6954 6.459066 TCCTACTCACTGAGTTTCATTCAAG 58.541 40.000 16.89 5.80 40.28 3.02
4781 6981 7.661847 TCTCTCATCTAGCATACGTTCTAATGA 59.338 37.037 0.00 5.47 0.00 2.57
4785 6985 6.760291 TCTCTCTCATCTAGCATACGTTCTA 58.240 40.000 0.00 0.00 0.00 2.10
4786 6986 5.616270 TCTCTCTCATCTAGCATACGTTCT 58.384 41.667 0.00 0.00 0.00 3.01
4790 6990 5.471797 TCCTTTCTCTCTCATCTAGCATACG 59.528 44.000 0.00 0.00 0.00 3.06
4812 7014 5.992217 GGACCACTGACATCATTTATACTCC 59.008 44.000 0.00 0.00 0.00 3.85
4813 7015 5.992217 GGGACCACTGACATCATTTATACTC 59.008 44.000 0.00 0.00 0.00 2.59
4838 7040 2.095617 ACCGCTTTATTTGTTACCGTGC 60.096 45.455 0.00 0.00 0.00 5.34
4842 7044 4.561213 GCATTCACCGCTTTATTTGTTACC 59.439 41.667 0.00 0.00 0.00 2.85
4847 7049 3.000523 GCATGCATTCACCGCTTTATTTG 59.999 43.478 14.21 0.00 0.00 2.32
4908 7111 2.282391 TGGACATGGCACCTGCAC 60.282 61.111 0.00 0.00 44.36 4.57
4909 7112 2.282391 GTGGACATGGCACCTGCA 60.282 61.111 0.00 0.00 44.36 4.41
4910 7113 3.434319 CGTGGACATGGCACCTGC 61.434 66.667 0.00 0.00 41.14 4.85
4911 7114 3.434319 GCGTGGACATGGCACCTG 61.434 66.667 0.00 0.00 0.00 4.00
4912 7115 3.952508 TGCGTGGACATGGCACCT 61.953 61.111 0.00 0.00 0.00 4.00
4915 7118 2.112928 AAGTGCGTGGACATGGCA 59.887 55.556 0.00 0.00 0.00 4.92
4989 7239 5.875224 TGTAATGTGATGAGAACAGGGAAA 58.125 37.500 0.00 0.00 0.00 3.13
4998 7248 4.219264 TGTGCCATGTAATGTGATGAGA 57.781 40.909 0.00 0.00 44.81 3.27
5049 7333 1.180029 GCGTGTAGAGAGGGTGGTAA 58.820 55.000 0.00 0.00 0.00 2.85
5051 7335 0.966370 GAGCGTGTAGAGAGGGTGGT 60.966 60.000 0.00 0.00 0.00 4.16
5053 7337 1.107114 ATGAGCGTGTAGAGAGGGTG 58.893 55.000 0.00 0.00 0.00 4.61
5055 7339 1.393603 TCATGAGCGTGTAGAGAGGG 58.606 55.000 0.00 0.00 0.00 4.30
5058 7342 4.627058 TGTTTTTCATGAGCGTGTAGAGA 58.373 39.130 0.00 0.00 0.00 3.10
5059 7343 4.686091 TCTGTTTTTCATGAGCGTGTAGAG 59.314 41.667 0.00 0.00 0.00 2.43
5060 7344 4.627058 TCTGTTTTTCATGAGCGTGTAGA 58.373 39.130 0.00 0.00 0.00 2.59
5061 7345 4.990543 TCTGTTTTTCATGAGCGTGTAG 57.009 40.909 0.00 0.00 0.00 2.74
5062 7346 4.994217 TGATCTGTTTTTCATGAGCGTGTA 59.006 37.500 0.00 0.00 0.00 2.90
5063 7347 3.814842 TGATCTGTTTTTCATGAGCGTGT 59.185 39.130 0.00 0.00 0.00 4.49
5064 7348 4.153986 GTGATCTGTTTTTCATGAGCGTG 58.846 43.478 0.00 0.00 0.00 5.34
5065 7349 3.189287 GGTGATCTGTTTTTCATGAGCGT 59.811 43.478 0.00 0.00 0.00 5.07
5066 7350 3.438087 AGGTGATCTGTTTTTCATGAGCG 59.562 43.478 0.00 0.00 0.00 5.03
5067 7351 5.645497 AGTAGGTGATCTGTTTTTCATGAGC 59.355 40.000 0.00 0.00 0.00 4.26
5068 7352 7.412346 CGAAGTAGGTGATCTGTTTTTCATGAG 60.412 40.741 0.00 0.00 0.00 2.90
5069 7353 6.368791 CGAAGTAGGTGATCTGTTTTTCATGA 59.631 38.462 0.00 0.00 0.00 3.07
5070 7354 6.537566 CGAAGTAGGTGATCTGTTTTTCATG 58.462 40.000 0.00 0.00 0.00 3.07
5072 7356 4.451096 GCGAAGTAGGTGATCTGTTTTTCA 59.549 41.667 0.00 0.00 0.00 2.69
5073 7357 4.451096 TGCGAAGTAGGTGATCTGTTTTTC 59.549 41.667 0.00 0.00 0.00 2.29
5081 7365 3.786635 ACAATCTGCGAAGTAGGTGATC 58.213 45.455 0.00 0.00 41.75 2.92
5089 7373 7.201444 CGTTTCTAATCTTACAATCTGCGAAGT 60.201 37.037 0.00 0.00 0.00 3.01
5092 7376 5.518847 CCGTTTCTAATCTTACAATCTGCGA 59.481 40.000 0.00 0.00 0.00 5.10
5093 7377 5.276868 CCCGTTTCTAATCTTACAATCTGCG 60.277 44.000 0.00 0.00 0.00 5.18
5094 7378 5.815740 TCCCGTTTCTAATCTTACAATCTGC 59.184 40.000 0.00 0.00 0.00 4.26
5095 7379 6.019801 CGTCCCGTTTCTAATCTTACAATCTG 60.020 42.308 0.00 0.00 0.00 2.90
5096 7380 6.040878 CGTCCCGTTTCTAATCTTACAATCT 58.959 40.000 0.00 0.00 0.00 2.40
5097 7381 5.276726 GCGTCCCGTTTCTAATCTTACAATC 60.277 44.000 0.00 0.00 0.00 2.67
5098 7382 4.569564 GCGTCCCGTTTCTAATCTTACAAT 59.430 41.667 0.00 0.00 0.00 2.71
5099 7383 3.928375 GCGTCCCGTTTCTAATCTTACAA 59.072 43.478 0.00 0.00 0.00 2.41
5100 7384 3.514645 GCGTCCCGTTTCTAATCTTACA 58.485 45.455 0.00 0.00 0.00 2.41
5101 7385 2.862536 GGCGTCCCGTTTCTAATCTTAC 59.137 50.000 0.00 0.00 0.00 2.34
5102 7386 3.169355 GGCGTCCCGTTTCTAATCTTA 57.831 47.619 0.00 0.00 0.00 2.10
5103 7387 2.019948 GGCGTCCCGTTTCTAATCTT 57.980 50.000 0.00 0.00 0.00 2.40
5104 7388 3.754766 GGCGTCCCGTTTCTAATCT 57.245 52.632 0.00 0.00 0.00 2.40
5138 7422 0.034477 AGACCCCTTTAATGCCCACG 60.034 55.000 0.00 0.00 0.00 4.94
5148 7432 2.520968 GTGTGGCCAGACCCCTTT 59.479 61.111 22.24 0.00 37.83 3.11
5251 7545 3.095262 ACAGGCTTGTGAGAGGGAT 57.905 52.632 0.00 0.00 35.83 3.85
5474 7794 2.906389 ACTTGACCTGAGATGGCAACTA 59.094 45.455 0.00 0.00 37.61 2.24
5504 7825 2.294233 GCTGCAGTTGTCCAAAAGATGA 59.706 45.455 16.64 0.00 0.00 2.92
5508 7832 1.406539 ACAGCTGCAGTTGTCCAAAAG 59.593 47.619 28.17 4.62 34.29 2.27
5573 7898 7.120726 GTGTTAGTACATGGCAACTCCTAAATT 59.879 37.037 0.00 0.00 36.50 1.82
5574 7899 6.598064 GTGTTAGTACATGGCAACTCCTAAAT 59.402 38.462 0.00 0.00 36.50 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.