Multiple sequence alignment - TraesCS1D01G229100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G229100 chr1D 100.000 3661 0 0 1 3661 317177731 317181391 0.000000e+00 6761.0
1 TraesCS1D01G229100 chr1D 96.639 119 4 0 1 119 290150188 290150306 8.020000e-47 198.0
2 TraesCS1D01G229100 chr1D 96.581 117 4 0 1 117 317146452 317146568 1.040000e-45 195.0
3 TraesCS1D01G229100 chr1D 95.726 117 5 0 1 117 290141598 290141714 4.830000e-44 189.0
4 TraesCS1D01G229100 chr1D 95.726 117 5 0 1 117 303139621 303139505 4.830000e-44 189.0
5 TraesCS1D01G229100 chr1D 95.726 117 5 0 1 117 303147405 303147289 4.830000e-44 189.0
6 TraesCS1D01G229100 chr1D 73.820 233 53 7 2379 2609 317388986 317388760 6.510000e-13 86.1
7 TraesCS1D01G229100 chr1D 81.250 112 14 5 2386 2492 403337980 403337871 2.340000e-12 84.2
8 TraesCS1D01G229100 chr1B 92.864 2228 140 7 1292 3501 429275438 429277664 0.000000e+00 3216.0
9 TraesCS1D01G229100 chr1B 87.931 348 22 5 970 1299 429269916 429270261 3.430000e-105 392.0
10 TraesCS1D01G229100 chr1B 91.061 179 11 2 3488 3661 429279118 429279296 1.700000e-58 237.0
11 TraesCS1D01G229100 chr1B 94.444 54 2 1 713 766 448532884 448532832 8.430000e-12 82.4
12 TraesCS1D01G229100 chr1B 78.505 107 14 6 2386 2486 542761383 542761280 1.100000e-05 62.1
13 TraesCS1D01G229100 chr1A 93.824 2105 103 13 967 3047 398131352 398133453 0.000000e+00 3142.0
14 TraesCS1D01G229100 chr1A 84.463 605 54 15 3084 3661 398133456 398134047 8.880000e-156 560.0
15 TraesCS1D01G229100 chr1A 98.718 156 2 0 439 594 238118272 238118427 1.000000e-70 278.0
16 TraesCS1D01G229100 chr1A 98.718 156 2 0 439 594 238122194 238122349 1.000000e-70 278.0
17 TraesCS1D01G229100 chr1A 98.485 132 2 0 582 713 94788288 94788419 2.200000e-57 233.0
18 TraesCS1D01G229100 chr1A 98.485 132 2 0 582 713 238113920 238114051 2.200000e-57 233.0
19 TraesCS1D01G229100 chr1A 77.679 112 18 4 2386 2492 498796027 498795918 1.100000e-05 62.1
20 TraesCS1D01G229100 chrUn 98.718 156 2 0 439 594 67962949 67962794 1.000000e-70 278.0
21 TraesCS1D01G229100 chrUn 98.718 156 2 0 439 594 86449903 86450058 1.000000e-70 278.0
22 TraesCS1D01G229100 chrUn 98.718 156 2 0 439 594 86455904 86456059 1.000000e-70 278.0
23 TraesCS1D01G229100 chrUn 98.718 156 2 0 439 594 222679373 222679218 1.000000e-70 278.0
24 TraesCS1D01G229100 chrUn 98.485 132 2 0 582 713 260198765 260198634 2.200000e-57 233.0
25 TraesCS1D01G229100 chrUn 98.485 132 2 0 582 713 393426709 393426578 2.200000e-57 233.0
26 TraesCS1D01G229100 chrUn 79.452 219 28 12 117 321 182869287 182869072 4.930000e-29 139.0
27 TraesCS1D01G229100 chr7B 98.718 156 2 0 439 594 742926028 742926183 1.000000e-70 278.0
28 TraesCS1D01G229100 chr7B 98.485 132 2 0 582 713 742921677 742921808 2.200000e-57 233.0
29 TraesCS1D01G229100 chr7B 98.000 50 1 0 713 762 119891161 119891112 1.810000e-13 87.9
30 TraesCS1D01G229100 chr7A 98.718 156 2 0 439 594 46411596 46411751 1.000000e-70 278.0
31 TraesCS1D01G229100 chr7A 86.667 75 5 3 283 356 700628294 700628224 1.090000e-10 78.7
32 TraesCS1D01G229100 chr7A 86.667 75 5 3 283 356 700645015 700644945 1.090000e-10 78.7
33 TraesCS1D01G229100 chr7A 86.667 75 5 3 283 356 700662513 700662443 1.090000e-10 78.7
34 TraesCS1D01G229100 chr7A 88.679 53 5 1 115 166 634441846 634441794 3.050000e-06 63.9
35 TraesCS1D01G229100 chr6D 98.077 156 3 0 439 594 168776110 168776265 4.660000e-69 272.0
36 TraesCS1D01G229100 chr6D 89.474 57 5 1 115 170 365589281 365589337 1.820000e-08 71.3
37 TraesCS1D01G229100 chr6D 85.246 61 8 1 263 323 304090594 304090535 1.100000e-05 62.1
38 TraesCS1D01G229100 chr4A 99.242 132 1 0 582 713 589154317 589154186 4.720000e-59 239.0
39 TraesCS1D01G229100 chr4A 95.588 68 2 1 376 442 514565420 514565353 1.390000e-19 108.0
40 TraesCS1D01G229100 chr4A 95.588 68 1 2 373 438 720134566 720134499 1.390000e-19 108.0
41 TraesCS1D01G229100 chr4A 97.959 49 1 0 713 761 744273132 744273084 6.510000e-13 86.1
42 TraesCS1D01G229100 chr6A 98.485 132 2 0 582 713 608878257 608878126 2.200000e-57 233.0
43 TraesCS1D01G229100 chr6A 95.726 117 5 0 1 117 613804421 613804305 4.830000e-44 189.0
44 TraesCS1D01G229100 chr6A 78.295 258 29 18 115 355 611180904 611180657 1.370000e-29 141.0
45 TraesCS1D01G229100 chr6A 83.459 133 17 5 211 340 37395985 37395855 6.420000e-23 119.0
46 TraesCS1D01G229100 chr4D 98.485 132 2 0 582 713 123428692 123428823 2.200000e-57 233.0
47 TraesCS1D01G229100 chr4D 98.485 132 2 0 582 713 241218265 241218134 2.200000e-57 233.0
48 TraesCS1D01G229100 chr4D 95.726 117 5 0 1 117 326027513 326027397 4.830000e-44 189.0
49 TraesCS1D01G229100 chr4D 91.228 57 4 1 115 171 338439965 338439910 3.920000e-10 76.8
50 TraesCS1D01G229100 chr6B 82.171 258 26 13 115 355 708379339 708379085 1.720000e-48 204.0
51 TraesCS1D01G229100 chr6B 98.000 50 1 0 713 762 217071884 217071933 1.810000e-13 87.9
52 TraesCS1D01G229100 chr7D 96.581 117 4 0 1 117 100565881 100565765 1.040000e-45 195.0
53 TraesCS1D01G229100 chr7D 97.015 67 1 1 373 438 45626810 45626744 1.070000e-20 111.0
54 TraesCS1D01G229100 chr7D 95.588 68 2 1 372 438 120249288 120249221 1.390000e-19 108.0
55 TraesCS1D01G229100 chr7D 95.588 68 2 1 372 438 176125154 176125221 1.390000e-19 108.0
56 TraesCS1D01G229100 chr7D 98.000 50 1 0 713 762 120249216 120249167 1.810000e-13 87.9
57 TraesCS1D01G229100 chr5A 95.763 118 5 0 1 118 645796427 645796544 1.340000e-44 191.0
58 TraesCS1D01G229100 chr5A 84.000 75 8 4 176 246 692775843 692775917 6.560000e-08 69.4
59 TraesCS1D01G229100 chr5A 74.667 150 26 9 1475 1612 556821268 556821119 5.110000e-04 56.5
60 TraesCS1D01G229100 chr5B 79.452 219 28 12 117 321 676057473 676057258 4.930000e-29 139.0
61 TraesCS1D01G229100 chr5B 94.643 56 3 0 713 768 124772439 124772384 1.810000e-13 87.9
62 TraesCS1D01G229100 chr3B 97.222 72 1 1 372 442 368604179 368604108 1.790000e-23 121.0
63 TraesCS1D01G229100 chr3B 76.707 249 27 23 125 355 452277292 452277057 3.870000e-20 110.0
64 TraesCS1D01G229100 chr3B 75.688 218 47 6 115 328 782998569 782998354 1.800000e-18 104.0
65 TraesCS1D01G229100 chr3B 94.444 54 3 0 712 765 202387064 202387011 2.340000e-12 84.2
66 TraesCS1D01G229100 chr2A 76.763 241 36 13 132 356 750548508 750548744 2.310000e-22 117.0
67 TraesCS1D01G229100 chr2A 87.719 57 6 1 115 170 188665533 188665477 8.490000e-07 65.8
68 TraesCS1D01G229100 chr2B 76.250 240 40 13 117 340 542688472 542688234 1.070000e-20 111.0
69 TraesCS1D01G229100 chr2B 96.923 65 1 1 375 438 385566826 385566890 1.390000e-19 108.0
70 TraesCS1D01G229100 chr2B 95.588 68 2 1 372 438 608215795 608215862 1.390000e-19 108.0
71 TraesCS1D01G229100 chr2B 87.234 94 11 1 115 207 29012990 29013083 5.000000e-19 106.0
72 TraesCS1D01G229100 chr5D 92.000 75 3 3 365 438 450203295 450203223 6.470000e-18 102.0
73 TraesCS1D01G229100 chr5D 74.803 254 45 15 116 353 349099577 349099827 3.010000e-16 97.1
74 TraesCS1D01G229100 chr5D 74.208 221 54 3 2389 2607 441122881 441122662 5.040000e-14 89.8
75 TraesCS1D01G229100 chr5D 73.913 276 47 12 115 369 42912423 42912152 1.810000e-13 87.9
76 TraesCS1D01G229100 chr5D 73.593 231 53 8 2380 2607 440917409 440917634 8.430000e-12 82.4
77 TraesCS1D01G229100 chr5D 77.037 135 24 7 1214 1344 440797558 440797689 1.820000e-08 71.3
78 TraesCS1D01G229100 chr5D 74.576 177 38 7 2433 2607 441111576 441111405 1.820000e-08 71.3
79 TraesCS1D01G229100 chr3D 84.946 93 13 1 116 207 174583122 174583214 3.890000e-15 93.5
80 TraesCS1D01G229100 chr2D 75.926 216 32 14 126 323 71970853 71971066 3.890000e-15 93.5
81 TraesCS1D01G229100 chr2D 97.959 49 1 0 713 761 599307230 599307278 6.510000e-13 86.1
82 TraesCS1D01G229100 chr2D 90.385 52 5 0 115 166 110962406 110962457 6.560000e-08 69.4
83 TraesCS1D01G229100 chr4B 97.959 49 1 0 713 761 449133106 449133154 6.510000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G229100 chr1D 317177731 317181391 3660 False 6761.0 6761 100.0000 1 3661 1 chr1D.!!$F4 3660
1 TraesCS1D01G229100 chr1B 429275438 429279296 3858 False 1726.5 3216 91.9625 1292 3661 2 chr1B.!!$F2 2369
2 TraesCS1D01G229100 chr1A 398131352 398134047 2695 False 1851.0 3142 89.1435 967 3661 2 chr1A.!!$F4 2694
3 TraesCS1D01G229100 chr1A 238118272 238122349 4077 False 278.0 278 98.7180 439 594 2 chr1A.!!$F3 155

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 640 0.032267 GAAATCCCGCCGAGTCCTAG 59.968 60.0 0.0 0.0 0.0 3.02 F
804 805 0.034896 GAAGGTTGACTCGCTCCCAA 59.965 55.0 0.0 0.0 0.0 4.12 F
1071 2185 0.035458 AACCCACTCGCAGAAAGAGG 59.965 55.0 0.0 0.0 39.9 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2365 4385 0.108804 GCGATCTTGTGGGTCGAGAA 60.109 55.000 2.37 0.0 39.69 2.87 R
2553 4952 1.200519 ATCCAGTTTAGCCGCCTACA 58.799 50.000 0.00 0.0 0.00 2.74 R
2799 5200 2.035321 CGGGCCTTTTGCAGTTCTAAAA 59.965 45.455 0.84 0.0 43.89 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.379174 CCGTGGGTCCTTGAGTTG 57.621 61.111 0.00 0.00 0.00 3.16
18 19 1.966451 CCGTGGGTCCTTGAGTTGC 60.966 63.158 0.00 0.00 0.00 4.17
19 20 1.071471 CGTGGGTCCTTGAGTTGCT 59.929 57.895 0.00 0.00 0.00 3.91
20 21 0.535102 CGTGGGTCCTTGAGTTGCTT 60.535 55.000 0.00 0.00 0.00 3.91
21 22 1.270625 CGTGGGTCCTTGAGTTGCTTA 60.271 52.381 0.00 0.00 0.00 3.09
22 23 2.427506 GTGGGTCCTTGAGTTGCTTAG 58.572 52.381 0.00 0.00 0.00 2.18
23 24 2.038557 GTGGGTCCTTGAGTTGCTTAGA 59.961 50.000 0.00 0.00 0.00 2.10
24 25 2.708861 TGGGTCCTTGAGTTGCTTAGAA 59.291 45.455 0.00 0.00 0.00 2.10
25 26 3.330701 TGGGTCCTTGAGTTGCTTAGAAT 59.669 43.478 0.00 0.00 0.00 2.40
26 27 4.202567 TGGGTCCTTGAGTTGCTTAGAATT 60.203 41.667 0.00 0.00 0.00 2.17
27 28 4.767409 GGGTCCTTGAGTTGCTTAGAATTT 59.233 41.667 0.00 0.00 0.00 1.82
28 29 5.106118 GGGTCCTTGAGTTGCTTAGAATTTC 60.106 44.000 0.00 0.00 0.00 2.17
29 30 5.707764 GGTCCTTGAGTTGCTTAGAATTTCT 59.292 40.000 4.03 4.03 0.00 2.52
30 31 6.207614 GGTCCTTGAGTTGCTTAGAATTTCTT 59.792 38.462 3.86 0.00 0.00 2.52
31 32 7.390718 GGTCCTTGAGTTGCTTAGAATTTCTTA 59.609 37.037 3.86 0.00 0.00 2.10
32 33 8.447053 GTCCTTGAGTTGCTTAGAATTTCTTAG 58.553 37.037 3.86 6.16 0.00 2.18
33 34 8.375506 TCCTTGAGTTGCTTAGAATTTCTTAGA 58.624 33.333 14.88 0.18 0.00 2.10
34 35 9.171877 CCTTGAGTTGCTTAGAATTTCTTAGAT 57.828 33.333 14.88 0.00 0.00 1.98
36 37 8.412608 TGAGTTGCTTAGAATTTCTTAGATCG 57.587 34.615 14.88 0.00 0.00 3.69
37 38 7.010552 TGAGTTGCTTAGAATTTCTTAGATCGC 59.989 37.037 14.88 2.86 0.00 4.58
38 39 6.818644 AGTTGCTTAGAATTTCTTAGATCGCA 59.181 34.615 14.88 5.14 0.00 5.10
39 40 7.334421 AGTTGCTTAGAATTTCTTAGATCGCAA 59.666 33.333 14.88 10.03 0.00 4.85
40 41 7.609760 TGCTTAGAATTTCTTAGATCGCAAA 57.390 32.000 14.88 0.00 0.00 3.68
41 42 7.464358 TGCTTAGAATTTCTTAGATCGCAAAC 58.536 34.615 14.88 0.00 0.00 2.93
42 43 6.625310 GCTTAGAATTTCTTAGATCGCAAACG 59.375 38.462 14.88 0.00 42.01 3.60
60 61 8.232100 CGCAAACGAAATGCAAATAAAATATG 57.768 30.769 11.16 0.00 44.01 1.78
61 62 8.106956 CGCAAACGAAATGCAAATAAAATATGA 58.893 29.630 11.16 0.00 44.01 2.15
62 63 9.919348 GCAAACGAAATGCAAATAAAATATGAT 57.081 25.926 0.00 0.00 43.29 2.45
151 152 9.723601 ATACACATTTAACAATTTCCAAATGCT 57.276 25.926 12.19 4.60 40.43 3.79
152 153 8.449251 ACACATTTAACAATTTCCAAATGCTT 57.551 26.923 12.19 1.94 40.43 3.91
153 154 8.344098 ACACATTTAACAATTTCCAAATGCTTG 58.656 29.630 12.19 8.57 40.43 4.01
154 155 8.557864 CACATTTAACAATTTCCAAATGCTTGA 58.442 29.630 12.19 0.00 40.43 3.02
155 156 9.287373 ACATTTAACAATTTCCAAATGCTTGAT 57.713 25.926 12.19 0.00 40.43 2.57
254 255 6.534475 TGCCTGATCAGCATTTTCTTTATT 57.466 33.333 17.76 0.00 34.69 1.40
255 256 6.938507 TGCCTGATCAGCATTTTCTTTATTT 58.061 32.000 17.76 0.00 34.69 1.40
256 257 8.065473 TGCCTGATCAGCATTTTCTTTATTTA 57.935 30.769 17.76 0.00 34.69 1.40
257 258 7.975616 TGCCTGATCAGCATTTTCTTTATTTAC 59.024 33.333 17.76 0.00 34.69 2.01
258 259 7.975616 GCCTGATCAGCATTTTCTTTATTTACA 59.024 33.333 17.76 0.00 0.00 2.41
278 279 9.737844 ATTTACATTTAACATTTTCCCAATGCT 57.262 25.926 0.00 0.00 0.00 3.79
279 280 9.566432 TTTACATTTAACATTTTCCCAATGCTT 57.434 25.926 0.00 0.00 0.00 3.91
280 281 7.437793 ACATTTAACATTTTCCCAATGCTTG 57.562 32.000 0.00 0.00 0.00 4.01
293 294 5.655893 CCAATGCTTGGTTAACACTTTTG 57.344 39.130 8.10 3.61 45.93 2.44
294 295 5.355596 CCAATGCTTGGTTAACACTTTTGA 58.644 37.500 8.10 0.00 45.93 2.69
295 296 5.814705 CCAATGCTTGGTTAACACTTTTGAA 59.185 36.000 8.10 0.00 45.93 2.69
296 297 6.314896 CCAATGCTTGGTTAACACTTTTGAAA 59.685 34.615 8.10 0.00 45.93 2.69
297 298 7.012232 CCAATGCTTGGTTAACACTTTTGAAAT 59.988 33.333 8.10 0.00 45.93 2.17
298 299 9.039870 CAATGCTTGGTTAACACTTTTGAAATA 57.960 29.630 8.10 0.00 0.00 1.40
299 300 7.995463 TGCTTGGTTAACACTTTTGAAATAC 57.005 32.000 8.10 0.00 0.00 1.89
300 301 7.777095 TGCTTGGTTAACACTTTTGAAATACT 58.223 30.769 8.10 0.00 0.00 2.12
301 302 8.254508 TGCTTGGTTAACACTTTTGAAATACTT 58.745 29.630 8.10 0.00 0.00 2.24
302 303 9.738832 GCTTGGTTAACACTTTTGAAATACTTA 57.261 29.630 8.10 0.00 0.00 2.24
369 370 8.542497 ACATGATCAAAAGATTTCACCATTTG 57.458 30.769 0.00 0.00 33.43 2.32
370 371 7.604927 ACATGATCAAAAGATTTCACCATTTGG 59.395 33.333 0.00 0.00 42.17 3.28
383 384 3.292492 CCATTTGGTTACTACCCCTCC 57.708 52.381 0.00 0.00 44.35 4.30
384 385 2.420967 CCATTTGGTTACTACCCCTCCG 60.421 54.545 0.00 0.00 44.35 4.63
385 386 2.028561 TTTGGTTACTACCCCTCCGT 57.971 50.000 0.00 0.00 44.35 4.69
386 387 1.560505 TTGGTTACTACCCCTCCGTC 58.439 55.000 0.00 0.00 44.35 4.79
387 388 0.324645 TGGTTACTACCCCTCCGTCC 60.325 60.000 0.00 0.00 44.35 4.79
388 389 1.387295 GGTTACTACCCCTCCGTCCG 61.387 65.000 0.00 0.00 38.60 4.79
389 390 1.076777 TTACTACCCCTCCGTCCGG 60.077 63.158 0.00 0.00 0.00 5.14
390 391 1.570857 TTACTACCCCTCCGTCCGGA 61.571 60.000 0.00 0.00 42.90 5.14
391 392 1.570857 TACTACCCCTCCGTCCGGAA 61.571 60.000 5.23 0.00 44.66 4.30
392 393 1.683365 CTACCCCTCCGTCCGGAAA 60.683 63.158 5.23 0.00 44.66 3.13
393 394 1.002017 TACCCCTCCGTCCGGAAAT 59.998 57.895 5.23 0.00 44.66 2.17
394 395 0.261402 TACCCCTCCGTCCGGAAATA 59.739 55.000 5.23 0.00 44.66 1.40
395 396 1.332889 ACCCCTCCGTCCGGAAATAC 61.333 60.000 5.23 0.00 44.66 1.89
396 397 1.047034 CCCCTCCGTCCGGAAATACT 61.047 60.000 5.23 0.00 44.66 2.12
397 398 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
398 399 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
399 400 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
400 401 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
401 402 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
402 403 2.094390 TCCGTCCGGAAATACTTGTCAG 60.094 50.000 5.23 0.00 42.05 3.51
403 404 2.094390 CCGTCCGGAAATACTTGTCAGA 60.094 50.000 5.23 0.00 37.50 3.27
404 405 3.179830 CGTCCGGAAATACTTGTCAGAG 58.820 50.000 5.23 0.00 0.00 3.35
405 406 3.522553 GTCCGGAAATACTTGTCAGAGG 58.477 50.000 5.23 0.00 0.00 3.69
406 407 3.194968 GTCCGGAAATACTTGTCAGAGGA 59.805 47.826 5.23 0.00 0.00 3.71
407 408 3.835978 TCCGGAAATACTTGTCAGAGGAA 59.164 43.478 0.00 0.00 0.00 3.36
408 409 4.469945 TCCGGAAATACTTGTCAGAGGAAT 59.530 41.667 0.00 0.00 0.00 3.01
409 410 4.572389 CCGGAAATACTTGTCAGAGGAATG 59.428 45.833 0.00 0.00 0.00 2.67
410 411 4.572389 CGGAAATACTTGTCAGAGGAATGG 59.428 45.833 0.00 0.00 0.00 3.16
411 412 5.626809 CGGAAATACTTGTCAGAGGAATGGA 60.627 44.000 0.00 0.00 0.00 3.41
412 413 6.360618 GGAAATACTTGTCAGAGGAATGGAT 58.639 40.000 0.00 0.00 0.00 3.41
413 414 6.261826 GGAAATACTTGTCAGAGGAATGGATG 59.738 42.308 0.00 0.00 0.00 3.51
414 415 5.965033 ATACTTGTCAGAGGAATGGATGT 57.035 39.130 0.00 0.00 0.00 3.06
415 416 7.437713 AATACTTGTCAGAGGAATGGATGTA 57.562 36.000 0.00 0.00 0.00 2.29
416 417 5.965033 ACTTGTCAGAGGAATGGATGTAT 57.035 39.130 0.00 0.00 0.00 2.29
417 418 5.923204 ACTTGTCAGAGGAATGGATGTATC 58.077 41.667 0.00 0.00 0.00 2.24
418 419 5.664908 ACTTGTCAGAGGAATGGATGTATCT 59.335 40.000 0.00 0.00 0.00 1.98
419 420 6.841229 ACTTGTCAGAGGAATGGATGTATCTA 59.159 38.462 0.00 0.00 0.00 1.98
420 421 6.907853 TGTCAGAGGAATGGATGTATCTAG 57.092 41.667 0.00 0.00 0.00 2.43
421 422 6.614657 TGTCAGAGGAATGGATGTATCTAGA 58.385 40.000 0.00 0.00 0.00 2.43
422 423 6.491745 TGTCAGAGGAATGGATGTATCTAGAC 59.508 42.308 0.00 0.00 0.00 2.59
423 424 6.491745 GTCAGAGGAATGGATGTATCTAGACA 59.508 42.308 0.00 0.00 0.00 3.41
424 425 7.178274 GTCAGAGGAATGGATGTATCTAGACAT 59.822 40.741 0.00 0.00 42.82 3.06
425 426 8.394040 TCAGAGGAATGGATGTATCTAGACATA 58.606 37.037 0.00 0.00 40.18 2.29
426 427 9.199645 CAGAGGAATGGATGTATCTAGACATAT 57.800 37.037 0.00 0.00 40.18 1.78
427 428 9.781425 AGAGGAATGGATGTATCTAGACATATT 57.219 33.333 0.00 0.00 40.18 1.28
587 588 1.412079 TTGATTGCAAACAGGGTGCT 58.588 45.000 9.49 0.00 42.69 4.40
590 591 2.103339 ATTGCAAACAGGGTGCTGGC 62.103 55.000 1.71 0.00 42.69 4.85
594 595 1.531602 AAACAGGGTGCTGGCTTCC 60.532 57.895 0.00 0.00 0.00 3.46
595 596 2.296945 AAACAGGGTGCTGGCTTCCA 62.297 55.000 0.00 0.00 0.00 3.53
596 597 2.674380 CAGGGTGCTGGCTTCCAC 60.674 66.667 8.78 0.00 0.00 4.02
600 601 3.971702 GTGCTGGCTTCCACCCCT 61.972 66.667 0.00 0.00 0.00 4.79
601 602 3.970410 TGCTGGCTTCCACCCCTG 61.970 66.667 0.00 0.00 0.00 4.45
603 604 2.673523 CTGGCTTCCACCCCTGAG 59.326 66.667 0.00 0.00 0.00 3.35
605 606 1.908340 CTGGCTTCCACCCCTGAGAG 61.908 65.000 0.00 0.00 0.00 3.20
607 608 1.621672 GGCTTCCACCCCTGAGAGAG 61.622 65.000 0.00 0.00 0.00 3.20
608 609 1.904032 CTTCCACCCCTGAGAGAGC 59.096 63.158 0.00 0.00 0.00 4.09
609 610 0.617249 CTTCCACCCCTGAGAGAGCT 60.617 60.000 0.00 0.00 0.00 4.09
610 611 0.178891 TTCCACCCCTGAGAGAGCTT 60.179 55.000 0.00 0.00 0.00 3.74
611 612 0.906756 TCCACCCCTGAGAGAGCTTG 60.907 60.000 0.00 0.00 0.00 4.01
614 615 1.558756 CACCCCTGAGAGAGCTTGATT 59.441 52.381 0.00 0.00 0.00 2.57
615 616 2.026449 CACCCCTGAGAGAGCTTGATTT 60.026 50.000 0.00 0.00 0.00 2.17
616 617 3.198635 CACCCCTGAGAGAGCTTGATTTA 59.801 47.826 0.00 0.00 0.00 1.40
619 620 3.198635 CCCTGAGAGAGCTTGATTTACCA 59.801 47.826 0.00 0.00 0.00 3.25
621 622 4.161189 CCTGAGAGAGCTTGATTTACCAGA 59.839 45.833 0.00 0.00 0.00 3.86
623 624 6.114187 TGAGAGAGCTTGATTTACCAGAAA 57.886 37.500 0.00 0.00 0.00 2.52
624 625 6.715280 TGAGAGAGCTTGATTTACCAGAAAT 58.285 36.000 0.00 0.00 0.00 2.17
625 626 6.820656 TGAGAGAGCTTGATTTACCAGAAATC 59.179 38.462 3.57 3.57 37.21 2.17
626 627 6.118852 AGAGAGCTTGATTTACCAGAAATCC 58.881 40.000 7.39 0.00 36.17 3.01
627 628 5.196695 AGAGCTTGATTTACCAGAAATCCC 58.803 41.667 7.39 0.00 36.17 3.85
629 630 3.489229 GCTTGATTTACCAGAAATCCCGC 60.489 47.826 7.39 6.33 36.17 6.13
630 631 2.650322 TGATTTACCAGAAATCCCGCC 58.350 47.619 7.39 0.00 36.17 6.13
631 632 1.602377 GATTTACCAGAAATCCCGCCG 59.398 52.381 0.00 0.00 32.07 6.46
632 633 0.614294 TTTACCAGAAATCCCGCCGA 59.386 50.000 0.00 0.00 0.00 5.54
633 634 0.177141 TTACCAGAAATCCCGCCGAG 59.823 55.000 0.00 0.00 0.00 4.63
634 635 0.974010 TACCAGAAATCCCGCCGAGT 60.974 55.000 0.00 0.00 0.00 4.18
635 636 1.521681 CCAGAAATCCCGCCGAGTC 60.522 63.158 0.00 0.00 0.00 3.36
638 639 0.396695 AGAAATCCCGCCGAGTCCTA 60.397 55.000 0.00 0.00 0.00 2.94
639 640 0.032267 GAAATCCCGCCGAGTCCTAG 59.968 60.000 0.00 0.00 0.00 3.02
641 642 1.392710 AATCCCGCCGAGTCCTAGTG 61.393 60.000 0.00 0.00 0.00 2.74
642 643 3.528370 CCCGCCGAGTCCTAGTGG 61.528 72.222 0.00 0.00 0.00 4.00
644 645 4.208686 CGCCGAGTCCTAGTGGGC 62.209 72.222 0.00 0.00 38.82 5.36
646 647 2.042843 CCGAGTCCTAGTGGGCCT 60.043 66.667 4.53 0.00 39.18 5.19
647 648 1.229359 CCGAGTCCTAGTGGGCCTA 59.771 63.158 4.53 0.00 39.18 3.93
649 650 0.183014 CGAGTCCTAGTGGGCCTAGA 59.817 60.000 4.53 0.00 45.21 2.43
650 651 1.202952 CGAGTCCTAGTGGGCCTAGAT 60.203 57.143 4.53 0.00 45.21 1.98
651 652 2.753507 CGAGTCCTAGTGGGCCTAGATT 60.754 54.545 4.53 0.00 45.21 2.40
652 653 2.894765 GAGTCCTAGTGGGCCTAGATTC 59.105 54.545 4.53 0.00 45.21 2.52
653 654 1.972075 GTCCTAGTGGGCCTAGATTCC 59.028 57.143 4.53 0.00 45.21 3.01
656 657 1.461091 TAGTGGGCCTAGATTCCGCG 61.461 60.000 4.53 0.00 36.29 6.46
657 658 2.443203 TGGGCCTAGATTCCGCGA 60.443 61.111 8.23 0.00 0.00 5.87
658 659 1.837051 TGGGCCTAGATTCCGCGAT 60.837 57.895 8.23 0.00 0.00 4.58
661 662 1.404315 GGGCCTAGATTCCGCGATAAG 60.404 57.143 8.23 0.00 0.00 1.73
665 666 3.576648 CCTAGATTCCGCGATAAGTTCC 58.423 50.000 8.23 0.00 0.00 3.62
666 667 2.135664 AGATTCCGCGATAAGTTCCG 57.864 50.000 8.23 0.00 0.00 4.30
667 668 1.679680 AGATTCCGCGATAAGTTCCGA 59.320 47.619 8.23 0.00 0.00 4.55
668 669 2.052157 GATTCCGCGATAAGTTCCGAG 58.948 52.381 8.23 0.00 0.00 4.63
669 670 1.097232 TTCCGCGATAAGTTCCGAGA 58.903 50.000 8.23 0.00 0.00 4.04
670 671 1.097232 TCCGCGATAAGTTCCGAGAA 58.903 50.000 8.23 0.00 0.00 2.87
671 672 1.473677 TCCGCGATAAGTTCCGAGAAA 59.526 47.619 8.23 0.00 0.00 2.52
672 673 2.100252 TCCGCGATAAGTTCCGAGAAAT 59.900 45.455 8.23 0.00 0.00 2.17
673 674 2.218759 CCGCGATAAGTTCCGAGAAATG 59.781 50.000 8.23 0.00 0.00 2.32
674 675 2.218759 CGCGATAAGTTCCGAGAAATGG 59.781 50.000 0.00 0.00 0.00 3.16
675 676 3.454375 GCGATAAGTTCCGAGAAATGGA 58.546 45.455 2.26 0.00 0.00 3.41
677 678 4.051922 CGATAAGTTCCGAGAAATGGAGG 58.948 47.826 0.00 0.00 36.72 4.30
679 680 5.671493 GATAAGTTCCGAGAAATGGAGGAA 58.329 41.667 0.00 0.00 40.12 3.36
680 681 4.367039 AAGTTCCGAGAAATGGAGGAAA 57.633 40.909 0.00 0.00 43.44 3.13
681 682 4.576330 AGTTCCGAGAAATGGAGGAAAT 57.424 40.909 0.00 0.00 43.44 2.17
682 683 4.265073 AGTTCCGAGAAATGGAGGAAATG 58.735 43.478 0.00 0.00 43.44 2.32
683 684 4.019321 AGTTCCGAGAAATGGAGGAAATGA 60.019 41.667 0.00 0.00 43.44 2.57
684 685 4.778213 TCCGAGAAATGGAGGAAATGAT 57.222 40.909 0.00 0.00 0.00 2.45
685 686 4.454678 TCCGAGAAATGGAGGAAATGATG 58.545 43.478 0.00 0.00 0.00 3.07
686 687 3.004106 CCGAGAAATGGAGGAAATGATGC 59.996 47.826 0.00 0.00 0.00 3.91
687 688 3.628942 CGAGAAATGGAGGAAATGATGCA 59.371 43.478 0.00 0.00 0.00 3.96
688 689 4.277672 CGAGAAATGGAGGAAATGATGCAT 59.722 41.667 0.00 0.00 0.00 3.96
689 690 5.221185 CGAGAAATGGAGGAAATGATGCATT 60.221 40.000 0.00 0.00 38.87 3.56
690 691 6.158023 AGAAATGGAGGAAATGATGCATTC 57.842 37.500 0.00 0.00 36.59 2.67
691 692 5.659525 AGAAATGGAGGAAATGATGCATTCA 59.340 36.000 0.00 0.52 36.59 2.57
692 693 5.943349 AATGGAGGAAATGATGCATTCAA 57.057 34.783 0.00 0.00 38.03 2.69
693 694 5.943349 ATGGAGGAAATGATGCATTCAAA 57.057 34.783 0.00 0.00 38.03 2.69
694 695 5.333299 TGGAGGAAATGATGCATTCAAAG 57.667 39.130 0.00 0.00 38.03 2.77
695 696 4.773674 TGGAGGAAATGATGCATTCAAAGT 59.226 37.500 0.00 0.00 38.03 2.66
696 697 5.246656 TGGAGGAAATGATGCATTCAAAGTT 59.753 36.000 0.00 0.00 38.03 2.66
697 698 5.809051 GGAGGAAATGATGCATTCAAAGTTC 59.191 40.000 0.00 2.73 38.03 3.01
698 699 5.404946 AGGAAATGATGCATTCAAAGTTCG 58.595 37.500 0.00 0.00 38.03 3.95
699 700 4.032104 GGAAATGATGCATTCAAAGTTCGC 59.968 41.667 0.00 0.00 38.03 4.70
700 701 3.853831 ATGATGCATTCAAAGTTCGCA 57.146 38.095 0.00 0.00 38.03 5.10
701 702 3.206034 TGATGCATTCAAAGTTCGCAG 57.794 42.857 0.00 0.00 35.79 5.18
702 703 2.813172 TGATGCATTCAAAGTTCGCAGA 59.187 40.909 0.00 0.00 35.79 4.26
703 704 3.252944 TGATGCATTCAAAGTTCGCAGAA 59.747 39.130 0.00 0.00 45.90 3.02
704 705 3.921119 TGCATTCAAAGTTCGCAGAAT 57.079 38.095 0.00 0.00 45.90 2.40
705 706 4.241590 TGCATTCAAAGTTCGCAGAATT 57.758 36.364 0.00 0.00 45.90 2.17
706 707 3.982701 TGCATTCAAAGTTCGCAGAATTG 59.017 39.130 0.00 0.00 45.90 2.32
707 708 3.181537 GCATTCAAAGTTCGCAGAATTGC 60.182 43.478 0.00 0.00 45.90 3.56
725 726 8.120465 CAGAATTGCAAGAATCCATTTTTATGC 58.880 33.333 4.94 0.00 0.00 3.14
731 732 7.825270 TGCAAGAATCCATTTTTATGCATTTCT 59.175 29.630 3.54 1.20 0.00 2.52
733 734 8.823818 CAAGAATCCATTTTTATGCATTTCTCC 58.176 33.333 3.54 0.00 0.00 3.71
734 735 7.205297 AGAATCCATTTTTATGCATTTCTCCG 58.795 34.615 3.54 0.00 0.00 4.63
735 736 6.713762 ATCCATTTTTATGCATTTCTCCGA 57.286 33.333 3.54 0.00 0.00 4.55
736 737 5.890334 TCCATTTTTATGCATTTCTCCGAC 58.110 37.500 3.54 0.00 0.00 4.79
737 738 5.417266 TCCATTTTTATGCATTTCTCCGACA 59.583 36.000 3.54 0.00 0.00 4.35
739 740 6.254157 CCATTTTTATGCATTTCTCCGACAAG 59.746 38.462 3.54 0.00 0.00 3.16
740 741 5.957842 TTTTATGCATTTCTCCGACAAGT 57.042 34.783 3.54 0.00 0.00 3.16
741 742 7.441890 TTTTTATGCATTTCTCCGACAAGTA 57.558 32.000 3.54 0.00 0.00 2.24
745 746 5.545658 TGCATTTCTCCGACAAGTATTTC 57.454 39.130 0.00 0.00 0.00 2.17
746 747 5.000591 TGCATTTCTCCGACAAGTATTTCA 58.999 37.500 0.00 0.00 0.00 2.69
747 748 5.122239 TGCATTTCTCCGACAAGTATTTCAG 59.878 40.000 0.00 0.00 0.00 3.02
748 749 5.447818 GCATTTCTCCGACAAGTATTTCAGG 60.448 44.000 0.00 0.00 0.00 3.86
749 750 5.477607 TTTCTCCGACAAGTATTTCAGGA 57.522 39.130 0.00 0.00 0.00 3.86
750 751 4.451629 TCTCCGACAAGTATTTCAGGAC 57.548 45.455 0.00 0.00 0.00 3.85
751 752 3.119602 TCTCCGACAAGTATTTCAGGACG 60.120 47.826 0.00 0.00 0.00 4.79
756 757 3.933332 GACAAGTATTTCAGGACGGAAGG 59.067 47.826 0.00 0.00 0.00 3.46
757 758 3.581332 ACAAGTATTTCAGGACGGAAGGA 59.419 43.478 0.00 0.00 0.00 3.36
758 759 4.184629 CAAGTATTTCAGGACGGAAGGAG 58.815 47.826 0.00 0.00 0.00 3.69
759 760 3.442076 AGTATTTCAGGACGGAAGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
761 762 3.889520 ATTTCAGGACGGAAGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
762 763 1.553706 TTCAGGACGGAAGGAGTACC 58.446 55.000 0.00 0.00 0.00 3.34
772 773 2.569183 AGGAGTACCTGTGAGTCGC 58.431 57.895 0.00 0.00 45.92 5.19
773 774 0.038455 AGGAGTACCTGTGAGTCGCT 59.962 55.000 5.11 0.00 45.92 4.93
774 775 0.889306 GGAGTACCTGTGAGTCGCTT 59.111 55.000 5.11 0.00 0.00 4.68
775 776 1.135344 GGAGTACCTGTGAGTCGCTTC 60.135 57.143 5.11 0.00 0.00 3.86
777 778 1.542030 AGTACCTGTGAGTCGCTTCAG 59.458 52.381 5.11 1.93 0.00 3.02
778 779 0.243907 TACCTGTGAGTCGCTTCAGC 59.756 55.000 5.11 0.00 37.78 4.26
789 790 2.748268 GCTTCAGCGAGTCAGAAGG 58.252 57.895 14.94 2.61 38.36 3.46
791 792 1.606737 GCTTCAGCGAGTCAGAAGGTT 60.607 52.381 14.94 0.00 38.36 3.50
793 794 1.328279 TCAGCGAGTCAGAAGGTTGA 58.672 50.000 0.00 0.00 0.00 3.18
794 795 1.000163 TCAGCGAGTCAGAAGGTTGAC 60.000 52.381 0.00 0.00 46.14 3.18
799 800 3.896317 GTCAGAAGGTTGACTCGCT 57.104 52.632 0.00 0.00 43.23 4.93
800 801 1.704070 GTCAGAAGGTTGACTCGCTC 58.296 55.000 0.00 0.00 43.23 5.03
801 802 0.603569 TCAGAAGGTTGACTCGCTCC 59.396 55.000 0.00 0.00 0.00 4.70
802 803 0.390472 CAGAAGGTTGACTCGCTCCC 60.390 60.000 0.00 0.00 0.00 4.30
803 804 0.832135 AGAAGGTTGACTCGCTCCCA 60.832 55.000 0.00 0.00 0.00 4.37
804 805 0.034896 GAAGGTTGACTCGCTCCCAA 59.965 55.000 0.00 0.00 0.00 4.12
805 806 0.472471 AAGGTTGACTCGCTCCCAAA 59.528 50.000 0.00 0.00 0.00 3.28
806 807 0.250338 AGGTTGACTCGCTCCCAAAC 60.250 55.000 0.00 0.00 0.00 2.93
807 808 0.534203 GGTTGACTCGCTCCCAAACA 60.534 55.000 0.00 0.00 0.00 2.83
808 809 1.305201 GTTGACTCGCTCCCAAACAA 58.695 50.000 0.00 0.00 0.00 2.83
809 810 1.673920 GTTGACTCGCTCCCAAACAAA 59.326 47.619 0.00 0.00 0.00 2.83
810 811 2.045561 TGACTCGCTCCCAAACAAAA 57.954 45.000 0.00 0.00 0.00 2.44
811 812 2.370349 TGACTCGCTCCCAAACAAAAA 58.630 42.857 0.00 0.00 0.00 1.94
812 813 2.357637 TGACTCGCTCCCAAACAAAAAG 59.642 45.455 0.00 0.00 0.00 2.27
813 814 2.357952 GACTCGCTCCCAAACAAAAAGT 59.642 45.455 0.00 0.00 0.00 2.66
814 815 3.547746 ACTCGCTCCCAAACAAAAAGTA 58.452 40.909 0.00 0.00 0.00 2.24
817 818 2.986479 CGCTCCCAAACAAAAAGTATGC 59.014 45.455 0.00 0.00 0.00 3.14
818 819 3.551863 CGCTCCCAAACAAAAAGTATGCA 60.552 43.478 0.00 0.00 0.00 3.96
819 820 3.740832 GCTCCCAAACAAAAAGTATGCAC 59.259 43.478 0.00 0.00 0.00 4.57
820 821 4.501400 GCTCCCAAACAAAAAGTATGCACT 60.501 41.667 0.00 0.00 36.19 4.40
822 823 5.355596 TCCCAAACAAAAAGTATGCACTTG 58.644 37.500 0.00 0.00 44.41 3.16
824 825 5.355596 CCAAACAAAAAGTATGCACTTGGA 58.644 37.500 0.00 0.00 44.41 3.53
826 827 6.018832 CCAAACAAAAAGTATGCACTTGGAAG 60.019 38.462 0.00 0.00 44.41 3.46
827 828 6.463995 AACAAAAAGTATGCACTTGGAAGA 57.536 33.333 0.00 0.00 44.41 2.87
828 829 6.076981 ACAAAAAGTATGCACTTGGAAGAG 57.923 37.500 0.00 0.00 44.41 2.85
829 830 4.773323 AAAAGTATGCACTTGGAAGAGC 57.227 40.909 0.00 2.22 44.41 4.09
832 833 4.481195 TGCACTTGGAAGAGCACC 57.519 55.556 7.33 0.00 45.43 5.01
833 834 1.228245 TGCACTTGGAAGAGCACCC 60.228 57.895 7.33 0.00 45.43 4.61
836 837 1.242076 CACTTGGAAGAGCACCCTTG 58.758 55.000 0.00 0.00 0.00 3.61
837 838 0.846693 ACTTGGAAGAGCACCCTTGT 59.153 50.000 0.00 0.00 0.00 3.16
838 839 1.202818 ACTTGGAAGAGCACCCTTGTC 60.203 52.381 0.00 0.00 0.00 3.18
839 840 1.072965 CTTGGAAGAGCACCCTTGTCT 59.927 52.381 0.00 0.00 0.00 3.41
843 844 2.626840 GAAGAGCACCCTTGTCTCATC 58.373 52.381 0.00 0.00 31.79 2.92
844 845 1.949799 AGAGCACCCTTGTCTCATCT 58.050 50.000 0.00 0.00 31.79 2.90
845 846 3.107402 AGAGCACCCTTGTCTCATCTA 57.893 47.619 0.00 0.00 31.79 1.98
846 847 3.445008 AGAGCACCCTTGTCTCATCTAA 58.555 45.455 0.00 0.00 31.79 2.10
847 848 3.840666 AGAGCACCCTTGTCTCATCTAAA 59.159 43.478 0.00 0.00 31.79 1.85
870 871 5.874895 AAAACGCCCTTCTGTTCTATAAC 57.125 39.130 0.00 0.00 36.07 1.89
871 872 4.820894 AACGCCCTTCTGTTCTATAACT 57.179 40.909 0.00 0.00 36.51 2.24
873 874 2.866762 CGCCCTTCTGTTCTATAACTGC 59.133 50.000 0.00 0.00 36.51 4.40
874 875 2.866762 GCCCTTCTGTTCTATAACTGCG 59.133 50.000 0.00 0.00 36.51 5.18
875 876 3.458189 CCCTTCTGTTCTATAACTGCGG 58.542 50.000 0.00 0.00 36.51 5.69
876 877 3.458189 CCTTCTGTTCTATAACTGCGGG 58.542 50.000 0.00 0.00 36.51 6.13
877 878 2.596904 TCTGTTCTATAACTGCGGGC 57.403 50.000 0.00 0.00 36.51 6.13
878 879 1.138266 TCTGTTCTATAACTGCGGGCC 59.862 52.381 0.00 0.00 36.51 5.80
880 881 1.296727 GTTCTATAACTGCGGGCCAC 58.703 55.000 4.39 0.00 32.54 5.01
881 882 2.396954 GTTCTATAACTGCGGGCCACG 61.397 57.143 4.39 7.24 37.91 4.94
883 884 0.874607 CTATAACTGCGGGCCACGTC 60.875 60.000 4.39 3.27 46.52 4.34
884 885 2.300850 TATAACTGCGGGCCACGTCC 62.301 60.000 4.39 0.00 46.52 4.79
893 894 4.329545 GCCACGTCCCAAGCCAGA 62.330 66.667 0.00 0.00 0.00 3.86
894 895 2.046892 CCACGTCCCAAGCCAGAG 60.047 66.667 0.00 0.00 0.00 3.35
895 896 2.743928 CACGTCCCAAGCCAGAGC 60.744 66.667 0.00 0.00 40.32 4.09
896 897 4.379243 ACGTCCCAAGCCAGAGCG 62.379 66.667 0.00 0.00 46.67 5.03
897 898 4.379243 CGTCCCAAGCCAGAGCGT 62.379 66.667 0.00 0.00 46.67 5.07
898 899 2.032681 GTCCCAAGCCAGAGCGTT 59.967 61.111 0.00 0.00 46.67 4.84
899 900 2.032528 TCCCAAGCCAGAGCGTTG 59.967 61.111 0.00 0.00 46.67 4.10
901 902 2.979676 CCAAGCCAGAGCGTTGCA 60.980 61.111 0.00 0.00 46.67 4.08
902 903 2.253452 CAAGCCAGAGCGTTGCAC 59.747 61.111 0.00 0.00 46.67 4.57
904 905 1.823470 AAGCCAGAGCGTTGCACAA 60.823 52.632 0.00 0.00 46.67 3.33
918 919 1.887320 GCACAAGCACAACGATCATC 58.113 50.000 0.00 0.00 41.58 2.92
921 922 3.677601 CACAAGCACAACGATCATCATC 58.322 45.455 0.00 0.00 0.00 2.92
922 923 3.125658 CACAAGCACAACGATCATCATCA 59.874 43.478 0.00 0.00 0.00 3.07
923 924 3.752747 ACAAGCACAACGATCATCATCAA 59.247 39.130 0.00 0.00 0.00 2.57
924 925 4.397103 ACAAGCACAACGATCATCATCAAT 59.603 37.500 0.00 0.00 0.00 2.57
925 926 5.106038 ACAAGCACAACGATCATCATCAATT 60.106 36.000 0.00 0.00 0.00 2.32
926 927 4.916870 AGCACAACGATCATCATCAATTG 58.083 39.130 0.00 0.00 33.62 2.32
927 928 4.039703 GCACAACGATCATCATCAATTGG 58.960 43.478 5.42 0.00 32.48 3.16
928 929 4.201940 GCACAACGATCATCATCAATTGGA 60.202 41.667 5.42 0.00 32.48 3.53
930 931 4.577693 ACAACGATCATCATCAATTGGAGG 59.422 41.667 5.42 0.00 32.48 4.30
932 933 2.486982 CGATCATCATCAATTGGAGGCC 59.513 50.000 5.42 0.00 0.00 5.19
934 935 3.675348 TCATCATCAATTGGAGGCCTT 57.325 42.857 6.77 0.00 0.00 4.35
935 936 3.985127 TCATCATCAATTGGAGGCCTTT 58.015 40.909 6.77 0.00 0.00 3.11
936 937 3.702548 TCATCATCAATTGGAGGCCTTTG 59.297 43.478 6.77 7.77 0.00 2.77
938 939 3.091545 TCATCAATTGGAGGCCTTTGTC 58.908 45.455 6.77 0.00 0.00 3.18
939 940 2.978156 TCAATTGGAGGCCTTTGTCT 57.022 45.000 6.77 0.00 0.00 3.41
940 941 4.018506 TCATCAATTGGAGGCCTTTGTCTA 60.019 41.667 6.77 0.00 0.00 2.59
1071 2185 0.035458 AACCCACTCGCAGAAAGAGG 59.965 55.000 0.00 0.00 39.90 3.69
1101 2295 1.196012 GAGTGGATTCCTCGGAACCT 58.804 55.000 3.95 0.00 36.91 3.50
1124 2318 2.989253 CCGCACCTCCCCCAAAAC 60.989 66.667 0.00 0.00 0.00 2.43
1125 2319 2.115266 CGCACCTCCCCCAAAACT 59.885 61.111 0.00 0.00 0.00 2.66
1126 2320 1.971695 CGCACCTCCCCCAAAACTC 60.972 63.158 0.00 0.00 0.00 3.01
1127 2321 1.152830 GCACCTCCCCCAAAACTCA 59.847 57.895 0.00 0.00 0.00 3.41
1128 2322 0.895559 GCACCTCCCCCAAAACTCAG 60.896 60.000 0.00 0.00 0.00 3.35
1130 2324 1.360393 ACCTCCCCCAAAACTCAGCA 61.360 55.000 0.00 0.00 0.00 4.41
1131 2325 0.610232 CCTCCCCCAAAACTCAGCAG 60.610 60.000 0.00 0.00 0.00 4.24
1179 2379 3.797353 AATGGAGGATGCGGCGGT 61.797 61.111 9.78 0.00 0.00 5.68
1250 2450 0.669077 CCCCGACAGTATTCTCTCCG 59.331 60.000 0.00 0.00 0.00 4.63
1271 2471 2.366837 TCATCACCCGCCTCCCAT 60.367 61.111 0.00 0.00 0.00 4.00
1536 2737 5.334724 CCATATCTCTTACCGTTACGACCTC 60.335 48.000 6.24 0.00 0.00 3.85
1673 2874 3.188965 CCTCACCGAGGTCGAGAC 58.811 66.667 17.34 0.00 44.25 3.36
1683 2884 3.500222 GTCGAGACCTCCGAGGAC 58.500 66.667 21.89 15.04 37.67 3.85
1833 3034 1.227380 GGGCGAGCTGGTCATACAG 60.227 63.158 1.83 0.00 41.41 2.74
1884 3085 7.041635 TGCATTTGATAATTTCGACATCCAT 57.958 32.000 0.00 0.00 0.00 3.41
1908 3109 1.153489 CACAGCGCCTAGACTGCAT 60.153 57.895 2.29 0.00 37.42 3.96
1926 3127 2.954318 GCATATGGTGTGCTTTCTGGAT 59.046 45.455 4.56 0.00 39.45 3.41
1980 3181 1.477295 GCTTCTCGGGTAACTACTGCT 59.523 52.381 0.00 0.00 0.00 4.24
1984 3185 2.494870 TCTCGGGTAACTACTGCTTTCC 59.505 50.000 0.00 0.00 0.00 3.13
2004 3206 7.148689 GCTTTCCTTGAACAATCACATTCATTC 60.149 37.037 0.00 0.00 34.87 2.67
2011 3213 4.275810 ACAATCACATTCATTCCTCAGGG 58.724 43.478 0.00 0.00 0.00 4.45
2086 3291 0.311790 AACTTGGCAATGTCACTGCG 59.688 50.000 0.00 0.00 40.88 5.18
2365 4385 8.519526 TGATATGAAAAAGAAAAATGTACGCCT 58.480 29.630 0.00 0.00 0.00 5.52
2453 4852 2.792947 GGGCAAGCGGTCGGATCTA 61.793 63.158 0.00 0.00 0.00 1.98
2510 4909 2.350522 CTTGAGTCAATGGAACTCCGG 58.649 52.381 5.91 0.00 39.43 5.14
2513 4912 1.003233 GAGTCAATGGAACTCCGGGTT 59.997 52.381 0.00 4.57 41.40 4.11
2553 4952 4.164988 CCAGGAGATGGGAAACTAATCAGT 59.835 45.833 0.00 0.00 46.36 3.41
2623 5023 4.652822 AGTTTGGAGAAGCTTATCCGTTT 58.347 39.130 29.77 15.63 41.41 3.60
2716 5116 2.934887 TGTGGGCATACTGATTGATGG 58.065 47.619 0.00 0.00 0.00 3.51
2721 5121 4.598807 TGGGCATACTGATTGATGGTATCT 59.401 41.667 0.00 0.00 0.00 1.98
2727 5127 5.983333 ACTGATTGATGGTATCTCCCTTT 57.017 39.130 0.00 0.00 34.77 3.11
2729 5129 7.639062 ACTGATTGATGGTATCTCCCTTTAT 57.361 36.000 0.00 0.00 34.77 1.40
2737 5137 8.375506 TGATGGTATCTCCCTTTATGTGTAATC 58.624 37.037 0.00 0.00 34.77 1.75
2798 5199 1.745232 ACGACCAGCACTTGTTTTCA 58.255 45.000 0.00 0.00 0.00 2.69
2799 5200 2.297701 ACGACCAGCACTTGTTTTCAT 58.702 42.857 0.00 0.00 0.00 2.57
2819 5220 3.744238 TTTTAGAACTGCAAAAGGCCC 57.256 42.857 0.00 0.00 43.89 5.80
2850 5251 8.107095 ACAACCTCATCAGGCTACTTTAATTTA 58.893 33.333 0.00 0.00 45.05 1.40
2856 5257 9.189156 TCATCAGGCTACTTTAATTTAGCAATT 57.811 29.630 14.58 0.00 42.22 2.32
2879 5280 3.157087 ACCCTTGGTTATGAACTGCTTG 58.843 45.455 0.00 0.00 27.29 4.01
3074 5486 9.892130 AGTAAAGTGTAATAAAATCCCTCAGAG 57.108 33.333 0.00 0.00 0.00 3.35
3075 5487 9.668497 GTAAAGTGTAATAAAATCCCTCAGAGT 57.332 33.333 0.00 0.00 0.00 3.24
3076 5488 8.794335 AAAGTGTAATAAAATCCCTCAGAGTC 57.206 34.615 0.00 0.00 0.00 3.36
3077 5489 6.890293 AGTGTAATAAAATCCCTCAGAGTCC 58.110 40.000 0.00 0.00 0.00 3.85
3078 5490 6.674419 AGTGTAATAAAATCCCTCAGAGTCCT 59.326 38.462 0.00 0.00 0.00 3.85
3079 5491 6.763610 GTGTAATAAAATCCCTCAGAGTCCTG 59.236 42.308 0.00 0.00 41.74 3.86
3115 5528 3.853307 GCAGAGGTGTGTGCAAAATGTAC 60.853 47.826 0.00 0.00 42.60 2.90
3205 5619 1.202830 TGCCAGGTCGTGTAACCAAAT 60.203 47.619 0.00 0.00 42.12 2.32
3274 5688 5.521906 TCCATAGTAGAGATGTTGTCAGC 57.478 43.478 0.00 0.00 0.00 4.26
3301 5715 1.270907 AGGAGTAACCAGGTGAGCTG 58.729 55.000 4.35 4.35 42.04 4.24
3314 5728 4.637534 CAGGTGAGCTGTGCTAACATAATT 59.362 41.667 2.99 0.00 41.59 1.40
3339 5753 2.163010 CAGGATTTGTCGCTTGCAATCT 59.837 45.455 0.00 0.00 0.00 2.40
3347 5761 7.739022 TTTGTCGCTTGCAATCTAAATATTG 57.261 32.000 0.00 0.00 39.41 1.90
3349 5763 4.676924 GTCGCTTGCAATCTAAATATTGGC 59.323 41.667 0.00 0.00 37.34 4.52
3366 5780 1.559682 TGGCAAGGGTACAGAAGGATC 59.440 52.381 0.00 0.00 0.00 3.36
3385 5799 5.678921 GGATCGTTCCTTTTGCAAAATTTG 58.321 37.500 24.06 15.47 39.14 2.32
3396 5810 3.603532 TGCAAAATTTGGTTGAACTGCA 58.396 36.364 7.89 5.95 36.28 4.41
3397 5811 3.373439 TGCAAAATTTGGTTGAACTGCAC 59.627 39.130 7.89 0.00 33.87 4.57
3416 5830 3.189287 GCACGAGCCATTGGATATAAAGG 59.811 47.826 6.95 0.00 33.58 3.11
3489 5903 6.458751 GCTCACCAATCGTTGAATAACATCAT 60.459 38.462 0.15 0.00 36.58 2.45
3510 5952 8.660373 CATCATACACTTCTCTTTCCACTAAAC 58.340 37.037 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.966451 GCAACTCAAGGACCCACGG 60.966 63.158 0.00 0.00 0.00 4.94
2 3 2.038557 TCTAAGCAACTCAAGGACCCAC 59.961 50.000 0.00 0.00 0.00 4.61
3 4 2.334977 TCTAAGCAACTCAAGGACCCA 58.665 47.619 0.00 0.00 0.00 4.51
4 5 3.418684 TTCTAAGCAACTCAAGGACCC 57.581 47.619 0.00 0.00 0.00 4.46
5 6 5.707764 AGAAATTCTAAGCAACTCAAGGACC 59.292 40.000 0.00 0.00 0.00 4.46
6 7 6.809630 AGAAATTCTAAGCAACTCAAGGAC 57.190 37.500 0.00 0.00 0.00 3.85
7 8 8.375506 TCTAAGAAATTCTAAGCAACTCAAGGA 58.624 33.333 0.00 0.00 0.00 3.36
8 9 8.553459 TCTAAGAAATTCTAAGCAACTCAAGG 57.447 34.615 0.00 0.00 0.00 3.61
10 11 8.873830 CGATCTAAGAAATTCTAAGCAACTCAA 58.126 33.333 0.00 0.00 0.00 3.02
11 12 7.010552 GCGATCTAAGAAATTCTAAGCAACTCA 59.989 37.037 0.00 0.00 0.00 3.41
12 13 7.010552 TGCGATCTAAGAAATTCTAAGCAACTC 59.989 37.037 0.00 0.00 0.00 3.01
13 14 6.818644 TGCGATCTAAGAAATTCTAAGCAACT 59.181 34.615 0.00 0.00 0.00 3.16
14 15 7.005062 TGCGATCTAAGAAATTCTAAGCAAC 57.995 36.000 0.00 0.00 0.00 4.17
15 16 7.609760 TTGCGATCTAAGAAATTCTAAGCAA 57.390 32.000 0.00 5.90 37.37 3.91
16 17 7.464358 GTTTGCGATCTAAGAAATTCTAAGCA 58.536 34.615 0.00 0.00 0.00 3.91
17 18 6.625310 CGTTTGCGATCTAAGAAATTCTAAGC 59.375 38.462 0.00 0.00 41.33 3.09
18 19 7.895870 TCGTTTGCGATCTAAGAAATTCTAAG 58.104 34.615 0.00 0.00 42.81 2.18
19 20 7.821595 TCGTTTGCGATCTAAGAAATTCTAA 57.178 32.000 0.00 0.00 42.81 2.10
34 35 5.890110 TTTTATTTGCATTTCGTTTGCGA 57.110 30.435 0.00 0.00 46.36 5.10
35 36 8.106956 TCATATTTTATTTGCATTTCGTTTGCG 58.893 29.630 0.00 0.00 43.10 4.85
36 37 9.919348 ATCATATTTTATTTGCATTTCGTTTGC 57.081 25.926 0.00 0.00 40.55 3.68
125 126 9.723601 AGCATTTGGAAATTGTTAAATGTGTAT 57.276 25.926 16.39 5.19 40.70 2.29
126 127 9.553064 AAGCATTTGGAAATTGTTAAATGTGTA 57.447 25.926 16.39 0.00 40.70 2.90
127 128 8.344098 CAAGCATTTGGAAATTGTTAAATGTGT 58.656 29.630 16.39 7.46 40.70 3.72
128 129 8.557864 TCAAGCATTTGGAAATTGTTAAATGTG 58.442 29.630 16.39 11.15 40.70 3.21
129 130 8.674263 TCAAGCATTTGGAAATTGTTAAATGT 57.326 26.923 16.39 6.90 40.70 2.71
231 232 6.534475 AATAAAGAAAATGCTGATCAGGCA 57.466 33.333 23.89 20.61 44.05 4.75
232 233 7.975616 TGTAAATAAAGAAAATGCTGATCAGGC 59.024 33.333 23.89 15.96 0.00 4.85
252 253 9.737844 AGCATTGGGAAAATGTTAAATGTAAAT 57.262 25.926 0.51 0.00 0.00 1.40
253 254 9.566432 AAGCATTGGGAAAATGTTAAATGTAAA 57.434 25.926 0.51 0.00 0.00 2.01
254 255 8.997323 CAAGCATTGGGAAAATGTTAAATGTAA 58.003 29.630 0.51 0.00 43.94 2.41
255 256 8.545229 CAAGCATTGGGAAAATGTTAAATGTA 57.455 30.769 0.51 0.00 43.94 2.29
256 257 7.437793 CAAGCATTGGGAAAATGTTAAATGT 57.562 32.000 0.51 0.00 43.94 2.71
273 274 9.040939 GTATTTCAAAAGTGTTAACCAAGCATT 57.959 29.630 2.48 0.00 0.00 3.56
274 275 8.421002 AGTATTTCAAAAGTGTTAACCAAGCAT 58.579 29.630 2.48 0.00 0.00 3.79
275 276 7.777095 AGTATTTCAAAAGTGTTAACCAAGCA 58.223 30.769 2.48 0.00 0.00 3.91
276 277 8.642908 AAGTATTTCAAAAGTGTTAACCAAGC 57.357 30.769 2.48 0.00 0.00 4.01
343 344 9.642327 CAAATGGTGAAATCTTTTGATCATGTA 57.358 29.630 0.00 0.00 38.40 2.29
344 345 7.604927 CCAAATGGTGAAATCTTTTGATCATGT 59.395 33.333 0.00 0.00 38.40 3.21
345 346 7.970384 CCAAATGGTGAAATCTTTTGATCATG 58.030 34.615 0.00 0.00 38.40 3.07
369 370 1.387295 CGGACGGAGGGGTAGTAACC 61.387 65.000 0.00 0.00 45.97 2.85
370 371 1.387295 CCGGACGGAGGGGTAGTAAC 61.387 65.000 4.40 0.00 37.50 2.50
371 372 1.076777 CCGGACGGAGGGGTAGTAA 60.077 63.158 4.40 0.00 37.50 2.24
372 373 1.570857 TTCCGGACGGAGGGGTAGTA 61.571 60.000 13.64 0.00 46.06 1.82
373 374 2.445492 TTTCCGGACGGAGGGGTAGT 62.445 60.000 13.64 0.00 46.06 2.73
374 375 1.047034 ATTTCCGGACGGAGGGGTAG 61.047 60.000 13.64 0.00 46.06 3.18
375 376 0.261402 TATTTCCGGACGGAGGGGTA 59.739 55.000 13.64 3.49 46.06 3.69
376 377 1.002017 TATTTCCGGACGGAGGGGT 59.998 57.895 13.64 4.38 46.06 4.95
377 378 1.047034 AGTATTTCCGGACGGAGGGG 61.047 60.000 13.64 0.00 46.06 4.79
378 379 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
379 380 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
380 381 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
381 382 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
382 383 2.094390 TCTGACAAGTATTTCCGGACGG 60.094 50.000 1.83 3.96 0.00 4.79
383 384 3.179830 CTCTGACAAGTATTTCCGGACG 58.820 50.000 1.83 0.00 0.00 4.79
384 385 3.194968 TCCTCTGACAAGTATTTCCGGAC 59.805 47.826 1.83 0.00 0.00 4.79
385 386 3.437213 TCCTCTGACAAGTATTTCCGGA 58.563 45.455 0.00 0.00 0.00 5.14
386 387 3.887621 TCCTCTGACAAGTATTTCCGG 57.112 47.619 0.00 0.00 0.00 5.14
387 388 4.572389 CCATTCCTCTGACAAGTATTTCCG 59.428 45.833 0.00 0.00 0.00 4.30
388 389 5.745227 TCCATTCCTCTGACAAGTATTTCC 58.255 41.667 0.00 0.00 0.00 3.13
389 390 6.825721 ACATCCATTCCTCTGACAAGTATTTC 59.174 38.462 0.00 0.00 0.00 2.17
390 391 6.725364 ACATCCATTCCTCTGACAAGTATTT 58.275 36.000 0.00 0.00 0.00 1.40
391 392 6.319048 ACATCCATTCCTCTGACAAGTATT 57.681 37.500 0.00 0.00 0.00 1.89
392 393 5.965033 ACATCCATTCCTCTGACAAGTAT 57.035 39.130 0.00 0.00 0.00 2.12
393 394 6.841229 AGATACATCCATTCCTCTGACAAGTA 59.159 38.462 0.00 0.00 0.00 2.24
394 395 5.664908 AGATACATCCATTCCTCTGACAAGT 59.335 40.000 0.00 0.00 0.00 3.16
395 396 6.172136 AGATACATCCATTCCTCTGACAAG 57.828 41.667 0.00 0.00 0.00 3.16
396 397 7.014711 GTCTAGATACATCCATTCCTCTGACAA 59.985 40.741 0.00 0.00 0.00 3.18
397 398 6.491745 GTCTAGATACATCCATTCCTCTGACA 59.508 42.308 0.00 0.00 0.00 3.58
398 399 6.491745 TGTCTAGATACATCCATTCCTCTGAC 59.508 42.308 0.00 0.00 0.00 3.51
399 400 6.614657 TGTCTAGATACATCCATTCCTCTGA 58.385 40.000 0.00 0.00 0.00 3.27
400 401 6.907853 TGTCTAGATACATCCATTCCTCTG 57.092 41.667 0.00 0.00 0.00 3.35
401 402 9.781425 AATATGTCTAGATACATCCATTCCTCT 57.219 33.333 0.00 0.00 40.52 3.69
416 417 9.422681 AGCACCTAGAACTAAAATATGTCTAGA 57.577 33.333 7.43 0.00 0.00 2.43
417 418 9.469807 CAGCACCTAGAACTAAAATATGTCTAG 57.530 37.037 0.00 0.00 0.00 2.43
418 419 8.421784 CCAGCACCTAGAACTAAAATATGTCTA 58.578 37.037 0.00 0.00 0.00 2.59
419 420 7.275920 CCAGCACCTAGAACTAAAATATGTCT 58.724 38.462 0.00 0.00 0.00 3.41
420 421 6.483640 CCCAGCACCTAGAACTAAAATATGTC 59.516 42.308 0.00 0.00 0.00 3.06
421 422 6.357367 CCCAGCACCTAGAACTAAAATATGT 58.643 40.000 0.00 0.00 0.00 2.29
422 423 5.765182 CCCCAGCACCTAGAACTAAAATATG 59.235 44.000 0.00 0.00 0.00 1.78
423 424 5.163088 CCCCCAGCACCTAGAACTAAAATAT 60.163 44.000 0.00 0.00 0.00 1.28
424 425 4.165372 CCCCCAGCACCTAGAACTAAAATA 59.835 45.833 0.00 0.00 0.00 1.40
425 426 3.053619 CCCCCAGCACCTAGAACTAAAAT 60.054 47.826 0.00 0.00 0.00 1.82
426 427 2.307686 CCCCCAGCACCTAGAACTAAAA 59.692 50.000 0.00 0.00 0.00 1.52
427 428 1.913419 CCCCCAGCACCTAGAACTAAA 59.087 52.381 0.00 0.00 0.00 1.85
428 429 1.079825 TCCCCCAGCACCTAGAACTAA 59.920 52.381 0.00 0.00 0.00 2.24
429 430 0.714180 TCCCCCAGCACCTAGAACTA 59.286 55.000 0.00 0.00 0.00 2.24
430 431 0.044855 ATCCCCCAGCACCTAGAACT 59.955 55.000 0.00 0.00 0.00 3.01
431 432 0.919710 AATCCCCCAGCACCTAGAAC 59.080 55.000 0.00 0.00 0.00 3.01
432 433 2.408565 CTAATCCCCCAGCACCTAGAA 58.591 52.381 0.00 0.00 0.00 2.10
433 434 2.040144 GCTAATCCCCCAGCACCTAGA 61.040 57.143 0.00 0.00 37.73 2.43
434 435 0.398318 GCTAATCCCCCAGCACCTAG 59.602 60.000 0.00 0.00 37.73 3.02
435 436 0.327095 TGCTAATCCCCCAGCACCTA 60.327 55.000 0.00 0.00 42.68 3.08
436 437 1.619363 TGCTAATCCCCCAGCACCT 60.619 57.895 0.00 0.00 42.68 4.00
437 438 1.152881 CTGCTAATCCCCCAGCACC 60.153 63.158 0.00 0.00 42.68 5.01
590 591 0.617249 AGCTCTCTCAGGGGTGGAAG 60.617 60.000 0.00 0.00 0.00 3.46
594 595 1.202330 ATCAAGCTCTCTCAGGGGTG 58.798 55.000 0.00 0.00 0.00 4.61
595 596 1.963985 AATCAAGCTCTCTCAGGGGT 58.036 50.000 0.00 0.00 0.00 4.95
596 597 3.432890 GGTAAATCAAGCTCTCTCAGGGG 60.433 52.174 0.00 0.00 0.00 4.79
597 598 3.198635 TGGTAAATCAAGCTCTCTCAGGG 59.801 47.826 0.00 0.00 0.00 4.45
598 599 4.161189 TCTGGTAAATCAAGCTCTCTCAGG 59.839 45.833 0.00 0.00 0.00 3.86
600 601 5.745312 TTCTGGTAAATCAAGCTCTCTCA 57.255 39.130 0.00 0.00 0.00 3.27
601 602 6.259829 GGATTTCTGGTAAATCAAGCTCTCTC 59.740 42.308 11.40 0.00 38.15 3.20
603 604 5.298026 GGGATTTCTGGTAAATCAAGCTCTC 59.702 44.000 11.40 0.00 38.15 3.20
605 606 4.035675 CGGGATTTCTGGTAAATCAAGCTC 59.964 45.833 11.40 0.00 38.15 4.09
607 608 3.489229 GCGGGATTTCTGGTAAATCAAGC 60.489 47.826 11.40 11.20 38.15 4.01
608 609 3.066760 GGCGGGATTTCTGGTAAATCAAG 59.933 47.826 11.40 6.48 38.15 3.02
609 610 3.020984 GGCGGGATTTCTGGTAAATCAA 58.979 45.455 11.40 0.00 38.15 2.57
610 611 2.650322 GGCGGGATTTCTGGTAAATCA 58.350 47.619 11.40 0.00 38.15 2.57
611 612 1.602377 CGGCGGGATTTCTGGTAAATC 59.398 52.381 0.00 2.54 36.25 2.17
614 615 0.177141 CTCGGCGGGATTTCTGGTAA 59.823 55.000 0.00 0.00 0.00 2.85
615 616 0.974010 ACTCGGCGGGATTTCTGGTA 60.974 55.000 16.65 0.00 0.00 3.25
616 617 2.240162 GACTCGGCGGGATTTCTGGT 62.240 60.000 16.65 0.00 0.00 4.00
619 620 0.396695 TAGGACTCGGCGGGATTTCT 60.397 55.000 16.65 7.46 0.00 2.52
621 622 0.686769 ACTAGGACTCGGCGGGATTT 60.687 55.000 16.65 0.00 0.00 2.17
623 624 1.828660 CACTAGGACTCGGCGGGAT 60.829 63.158 16.65 0.62 0.00 3.85
624 625 2.439701 CACTAGGACTCGGCGGGA 60.440 66.667 16.65 0.00 0.00 5.14
625 626 3.528370 CCACTAGGACTCGGCGGG 61.528 72.222 4.58 4.58 36.89 6.13
626 627 3.528370 CCCACTAGGACTCGGCGG 61.528 72.222 7.21 0.00 38.24 6.13
627 628 4.208686 GCCCACTAGGACTCGGCG 62.209 72.222 0.00 0.00 38.24 6.46
638 639 2.797278 CGCGGAATCTAGGCCCACT 61.797 63.158 0.00 0.00 0.00 4.00
639 640 2.100879 ATCGCGGAATCTAGGCCCAC 62.101 60.000 6.13 0.00 0.00 4.61
641 642 0.606604 TTATCGCGGAATCTAGGCCC 59.393 55.000 6.13 0.00 0.00 5.80
642 643 1.272769 ACTTATCGCGGAATCTAGGCC 59.727 52.381 6.13 0.00 0.00 5.19
644 645 3.576648 GGAACTTATCGCGGAATCTAGG 58.423 50.000 6.13 0.00 0.00 3.02
646 647 2.880268 TCGGAACTTATCGCGGAATCTA 59.120 45.455 6.13 0.00 0.00 1.98
647 648 1.679680 TCGGAACTTATCGCGGAATCT 59.320 47.619 6.13 0.00 0.00 2.40
649 650 1.679680 TCTCGGAACTTATCGCGGAAT 59.320 47.619 6.13 0.00 0.00 3.01
650 651 1.097232 TCTCGGAACTTATCGCGGAA 58.903 50.000 6.13 0.00 0.00 4.30
651 652 1.097232 TTCTCGGAACTTATCGCGGA 58.903 50.000 6.13 0.00 0.00 5.54
652 653 1.917273 TTTCTCGGAACTTATCGCGG 58.083 50.000 6.13 0.00 0.00 6.46
653 654 2.218759 CCATTTCTCGGAACTTATCGCG 59.781 50.000 0.00 0.00 0.00 5.87
656 657 5.277857 TCCTCCATTTCTCGGAACTTATC 57.722 43.478 0.00 0.00 30.33 1.75
657 658 5.693769 TTCCTCCATTTCTCGGAACTTAT 57.306 39.130 0.00 0.00 31.00 1.73
658 659 5.492855 TTTCCTCCATTTCTCGGAACTTA 57.507 39.130 0.00 0.00 35.42 2.24
661 662 4.261801 TCATTTCCTCCATTTCTCGGAAC 58.738 43.478 0.00 0.00 35.42 3.62
665 666 3.628942 TGCATCATTTCCTCCATTTCTCG 59.371 43.478 0.00 0.00 0.00 4.04
666 667 5.786264 ATGCATCATTTCCTCCATTTCTC 57.214 39.130 0.00 0.00 0.00 2.87
667 668 5.659525 TGAATGCATCATTTCCTCCATTTCT 59.340 36.000 0.00 0.00 33.90 2.52
668 669 5.909477 TGAATGCATCATTTCCTCCATTTC 58.091 37.500 0.00 0.00 33.90 2.17
669 670 5.943349 TGAATGCATCATTTCCTCCATTT 57.057 34.783 0.00 0.00 33.90 2.32
670 671 5.943349 TTGAATGCATCATTTCCTCCATT 57.057 34.783 0.00 0.00 38.03 3.16
671 672 5.424252 ACTTTGAATGCATCATTTCCTCCAT 59.576 36.000 0.00 0.00 38.03 3.41
672 673 4.773674 ACTTTGAATGCATCATTTCCTCCA 59.226 37.500 0.00 0.00 38.03 3.86
673 674 5.334724 ACTTTGAATGCATCATTTCCTCC 57.665 39.130 0.00 0.00 38.03 4.30
674 675 5.514204 CGAACTTTGAATGCATCATTTCCTC 59.486 40.000 0.00 0.00 38.03 3.71
675 676 5.404946 CGAACTTTGAATGCATCATTTCCT 58.595 37.500 0.00 0.00 38.03 3.36
677 678 4.622313 TGCGAACTTTGAATGCATCATTTC 59.378 37.500 0.00 0.00 38.03 2.17
679 680 4.082625 TCTGCGAACTTTGAATGCATCATT 60.083 37.500 0.00 0.00 38.03 2.57
680 681 3.441222 TCTGCGAACTTTGAATGCATCAT 59.559 39.130 0.00 0.00 38.03 2.45
681 682 2.813172 TCTGCGAACTTTGAATGCATCA 59.187 40.909 0.00 0.00 34.66 3.07
682 683 3.476295 TCTGCGAACTTTGAATGCATC 57.524 42.857 0.00 0.00 34.66 3.91
683 684 3.921119 TTCTGCGAACTTTGAATGCAT 57.079 38.095 0.00 0.00 34.66 3.96
684 685 3.921119 ATTCTGCGAACTTTGAATGCA 57.079 38.095 0.00 0.00 0.00 3.96
685 686 3.181537 GCAATTCTGCGAACTTTGAATGC 60.182 43.478 0.00 0.00 39.20 3.56
686 687 4.557276 GCAATTCTGCGAACTTTGAATG 57.443 40.909 0.00 0.00 39.20 2.67
699 700 8.120465 GCATAAAAATGGATTCTTGCAATTCTG 58.880 33.333 0.00 0.00 0.00 3.02
700 701 7.825270 TGCATAAAAATGGATTCTTGCAATTCT 59.175 29.630 0.00 0.00 36.06 2.40
701 702 7.976826 TGCATAAAAATGGATTCTTGCAATTC 58.023 30.769 0.00 0.00 36.06 2.17
702 703 7.925043 TGCATAAAAATGGATTCTTGCAATT 57.075 28.000 0.00 0.00 36.06 2.32
703 704 8.514330 AATGCATAAAAATGGATTCTTGCAAT 57.486 26.923 0.00 0.00 41.58 3.56
704 705 7.925043 AATGCATAAAAATGGATTCTTGCAA 57.075 28.000 0.00 0.00 41.58 4.08
705 706 7.825270 AGAAATGCATAAAAATGGATTCTTGCA 59.175 29.630 0.00 0.00 40.85 4.08
706 707 8.205131 AGAAATGCATAAAAATGGATTCTTGC 57.795 30.769 0.00 0.00 40.85 4.01
707 708 8.823818 GGAGAAATGCATAAAAATGGATTCTTG 58.176 33.333 0.00 0.00 40.85 3.02
708 709 7.707893 CGGAGAAATGCATAAAAATGGATTCTT 59.292 33.333 0.00 0.00 40.85 2.52
709 710 7.068593 TCGGAGAAATGCATAAAAATGGATTCT 59.931 33.333 0.00 1.51 40.85 2.40
710 711 7.168135 GTCGGAGAAATGCATAAAAATGGATTC 59.832 37.037 0.00 0.00 40.85 2.52
711 712 6.980397 GTCGGAGAAATGCATAAAAATGGATT 59.020 34.615 0.00 0.00 43.01 3.01
712 713 6.096705 TGTCGGAGAAATGCATAAAAATGGAT 59.903 34.615 0.00 0.00 39.69 3.41
713 714 5.417266 TGTCGGAGAAATGCATAAAAATGGA 59.583 36.000 0.00 0.00 39.69 3.41
714 715 5.649557 TGTCGGAGAAATGCATAAAAATGG 58.350 37.500 0.00 0.00 39.69 3.16
722 723 5.647658 TGAAATACTTGTCGGAGAAATGCAT 59.352 36.000 0.00 0.00 39.69 3.96
725 726 5.874810 TCCTGAAATACTTGTCGGAGAAATG 59.125 40.000 0.00 0.00 39.69 2.32
731 732 2.094390 CCGTCCTGAAATACTTGTCGGA 60.094 50.000 0.00 0.00 38.03 4.55
733 734 3.226346 TCCGTCCTGAAATACTTGTCG 57.774 47.619 0.00 0.00 0.00 4.35
734 735 3.933332 CCTTCCGTCCTGAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
735 736 3.581332 TCCTTCCGTCCTGAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
736 737 4.184629 CTCCTTCCGTCCTGAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
737 738 3.838903 ACTCCTTCCGTCCTGAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
739 740 3.889520 ACTCCTTCCGTCCTGAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
740 741 3.703052 GGTACTCCTTCCGTCCTGAAATA 59.297 47.826 0.00 0.00 0.00 1.40
741 742 2.500504 GGTACTCCTTCCGTCCTGAAAT 59.499 50.000 0.00 0.00 0.00 2.17
745 746 0.818296 CAGGTACTCCTTCCGTCCTG 59.182 60.000 0.00 0.00 43.07 3.86
746 747 0.408700 ACAGGTACTCCTTCCGTCCT 59.591 55.000 0.00 0.00 43.07 3.85
747 748 0.531200 CACAGGTACTCCTTCCGTCC 59.469 60.000 0.00 0.00 43.07 4.79
748 749 1.473278 CTCACAGGTACTCCTTCCGTC 59.527 57.143 0.00 0.00 43.07 4.79
749 750 1.203025 ACTCACAGGTACTCCTTCCGT 60.203 52.381 0.00 0.00 43.07 4.69
750 751 1.473278 GACTCACAGGTACTCCTTCCG 59.527 57.143 0.00 0.00 43.07 4.30
751 752 1.473278 CGACTCACAGGTACTCCTTCC 59.527 57.143 0.00 0.00 43.07 3.46
756 757 1.540267 TGAAGCGACTCACAGGTACTC 59.460 52.381 0.00 0.00 34.60 2.59
757 758 1.542030 CTGAAGCGACTCACAGGTACT 59.458 52.381 0.00 0.00 43.88 2.73
758 759 1.983972 CTGAAGCGACTCACAGGTAC 58.016 55.000 0.00 0.00 0.00 3.34
759 760 0.243907 GCTGAAGCGACTCACAGGTA 59.756 55.000 0.00 0.00 0.00 3.08
761 762 3.867771 GCTGAAGCGACTCACAGG 58.132 61.111 0.00 0.00 0.00 4.00
771 772 0.037790 ACCTTCTGACTCGCTGAAGC 60.038 55.000 0.00 0.00 45.78 3.86
772 773 2.064762 CAACCTTCTGACTCGCTGAAG 58.935 52.381 0.00 0.00 46.34 3.02
773 774 1.686587 TCAACCTTCTGACTCGCTGAA 59.313 47.619 0.00 0.00 33.97 3.02
774 775 1.000163 GTCAACCTTCTGACTCGCTGA 60.000 52.381 0.00 0.00 42.11 4.26
775 776 1.423395 GTCAACCTTCTGACTCGCTG 58.577 55.000 0.00 0.00 42.11 5.18
782 783 0.603569 GGAGCGAGTCAACCTTCTGA 59.396 55.000 0.00 0.00 0.00 3.27
783 784 0.390472 GGGAGCGAGTCAACCTTCTG 60.390 60.000 0.00 0.00 0.00 3.02
784 785 0.832135 TGGGAGCGAGTCAACCTTCT 60.832 55.000 0.00 0.00 0.00 2.85
786 787 0.472471 TTTGGGAGCGAGTCAACCTT 59.528 50.000 0.00 0.00 0.00 3.50
787 788 0.250338 GTTTGGGAGCGAGTCAACCT 60.250 55.000 0.00 0.00 0.00 3.50
788 789 0.534203 TGTTTGGGAGCGAGTCAACC 60.534 55.000 0.00 0.00 0.00 3.77
789 790 1.305201 TTGTTTGGGAGCGAGTCAAC 58.695 50.000 0.00 0.00 0.00 3.18
791 792 2.045561 TTTTGTTTGGGAGCGAGTCA 57.954 45.000 0.00 0.00 0.00 3.41
793 794 2.375146 ACTTTTTGTTTGGGAGCGAGT 58.625 42.857 0.00 0.00 0.00 4.18
794 795 4.475944 CATACTTTTTGTTTGGGAGCGAG 58.524 43.478 0.00 0.00 0.00 5.03
796 797 2.986479 GCATACTTTTTGTTTGGGAGCG 59.014 45.455 0.00 0.00 0.00 5.03
797 798 3.740832 GTGCATACTTTTTGTTTGGGAGC 59.259 43.478 0.00 0.00 0.00 4.70
799 800 5.355596 CAAGTGCATACTTTTTGTTTGGGA 58.644 37.500 0.00 0.00 44.57 4.37
800 801 4.511082 CCAAGTGCATACTTTTTGTTTGGG 59.489 41.667 0.00 0.00 44.57 4.12
801 802 5.355596 TCCAAGTGCATACTTTTTGTTTGG 58.644 37.500 0.00 0.00 44.57 3.28
802 803 6.756074 TCTTCCAAGTGCATACTTTTTGTTTG 59.244 34.615 0.00 0.00 44.57 2.93
803 804 6.872920 TCTTCCAAGTGCATACTTTTTGTTT 58.127 32.000 0.00 0.00 44.57 2.83
804 805 6.463995 TCTTCCAAGTGCATACTTTTTGTT 57.536 33.333 0.00 0.00 44.57 2.83
805 806 5.507985 GCTCTTCCAAGTGCATACTTTTTGT 60.508 40.000 8.20 0.00 44.57 2.83
806 807 4.919754 GCTCTTCCAAGTGCATACTTTTTG 59.080 41.667 8.20 0.00 44.57 2.44
807 808 4.584325 TGCTCTTCCAAGTGCATACTTTTT 59.416 37.500 11.14 0.00 46.76 1.94
808 809 4.144297 TGCTCTTCCAAGTGCATACTTTT 58.856 39.130 11.14 0.00 46.76 2.27
809 810 3.754965 TGCTCTTCCAAGTGCATACTTT 58.245 40.909 11.14 0.00 46.76 2.66
810 811 3.423539 TGCTCTTCCAAGTGCATACTT 57.576 42.857 11.14 0.00 46.76 2.24
817 818 1.242076 CAAGGGTGCTCTTCCAAGTG 58.758 55.000 0.00 0.00 0.00 3.16
818 819 0.846693 ACAAGGGTGCTCTTCCAAGT 59.153 50.000 0.00 0.00 0.00 3.16
819 820 1.072965 AGACAAGGGTGCTCTTCCAAG 59.927 52.381 0.00 0.00 0.00 3.61
820 821 1.072331 GAGACAAGGGTGCTCTTCCAA 59.928 52.381 0.00 0.00 0.00 3.53
821 822 0.687354 GAGACAAGGGTGCTCTTCCA 59.313 55.000 0.00 0.00 0.00 3.53
822 823 0.687354 TGAGACAAGGGTGCTCTTCC 59.313 55.000 0.00 0.00 32.41 3.46
824 825 2.264455 AGATGAGACAAGGGTGCTCTT 58.736 47.619 0.00 0.00 32.41 2.85
826 827 3.895232 TTAGATGAGACAAGGGTGCTC 57.105 47.619 0.00 0.00 0.00 4.26
827 828 4.640771 TTTTAGATGAGACAAGGGTGCT 57.359 40.909 0.00 0.00 0.00 4.40
847 848 6.002082 AGTTATAGAACAGAAGGGCGTTTTT 58.998 36.000 2.62 0.00 38.10 1.94
851 852 3.679083 GCAGTTATAGAACAGAAGGGCGT 60.679 47.826 2.62 0.00 38.10 5.68
853 854 2.866762 CGCAGTTATAGAACAGAAGGGC 59.133 50.000 2.62 0.00 38.10 5.19
854 855 3.458189 CCGCAGTTATAGAACAGAAGGG 58.542 50.000 2.62 0.00 38.10 3.95
855 856 3.458189 CCCGCAGTTATAGAACAGAAGG 58.542 50.000 2.62 2.37 38.10 3.46
856 857 2.866762 GCCCGCAGTTATAGAACAGAAG 59.133 50.000 2.62 0.00 38.10 2.85
857 858 2.419574 GGCCCGCAGTTATAGAACAGAA 60.420 50.000 2.62 0.00 38.10 3.02
859 860 1.134521 TGGCCCGCAGTTATAGAACAG 60.135 52.381 0.00 0.00 38.10 3.16
860 861 0.906066 TGGCCCGCAGTTATAGAACA 59.094 50.000 0.00 0.00 38.10 3.18
861 862 1.296727 GTGGCCCGCAGTTATAGAAC 58.703 55.000 0.00 0.00 35.64 3.01
862 863 0.179094 CGTGGCCCGCAGTTATAGAA 60.179 55.000 0.00 0.00 0.00 2.10
863 864 1.324740 ACGTGGCCCGCAGTTATAGA 61.325 55.000 12.78 0.00 41.42 1.98
864 865 0.874607 GACGTGGCCCGCAGTTATAG 60.875 60.000 12.78 0.00 41.42 1.31
865 866 1.142314 GACGTGGCCCGCAGTTATA 59.858 57.895 12.78 0.00 41.42 0.98
866 867 2.125269 GACGTGGCCCGCAGTTAT 60.125 61.111 12.78 0.00 41.42 1.89
867 868 4.382320 GGACGTGGCCCGCAGTTA 62.382 66.667 12.78 0.00 41.42 2.24
876 877 4.329545 TCTGGCTTGGGACGTGGC 62.330 66.667 0.00 0.00 0.00 5.01
877 878 2.046892 CTCTGGCTTGGGACGTGG 60.047 66.667 0.00 0.00 0.00 4.94
878 879 2.743928 GCTCTGGCTTGGGACGTG 60.744 66.667 0.00 0.00 35.22 4.49
880 881 3.883744 AACGCTCTGGCTTGGGACG 62.884 63.158 0.00 0.00 36.09 4.79
881 882 2.032681 AACGCTCTGGCTTGGGAC 59.967 61.111 0.00 0.00 36.09 4.46
883 884 3.741476 GCAACGCTCTGGCTTGGG 61.741 66.667 0.00 0.00 36.09 4.12
884 885 2.979676 TGCAACGCTCTGGCTTGG 60.980 61.111 0.00 0.00 36.09 3.61
885 886 2.062361 TTGTGCAACGCTCTGGCTTG 62.062 55.000 0.00 0.00 42.39 4.01
886 887 1.789078 CTTGTGCAACGCTCTGGCTT 61.789 55.000 0.00 0.00 42.39 4.35
887 888 2.203195 TTGTGCAACGCTCTGGCT 60.203 55.556 0.00 0.00 42.39 4.75
889 890 2.253452 GCTTGTGCAACGCTCTGG 59.747 61.111 0.00 0.00 42.39 3.86
899 900 1.197492 TGATGATCGTTGTGCTTGTGC 59.803 47.619 0.00 0.00 40.20 4.57
901 902 3.337358 TGATGATGATCGTTGTGCTTGT 58.663 40.909 0.00 0.00 0.00 3.16
902 903 4.345271 TTGATGATGATCGTTGTGCTTG 57.655 40.909 0.00 0.00 0.00 4.01
904 905 4.201980 CCAATTGATGATGATCGTTGTGCT 60.202 41.667 7.12 0.00 30.46 4.40
907 908 4.577693 CCTCCAATTGATGATGATCGTTGT 59.422 41.667 7.12 0.00 30.46 3.32
909 910 3.567164 GCCTCCAATTGATGATGATCGTT 59.433 43.478 7.12 0.00 0.00 3.85
910 911 3.144506 GCCTCCAATTGATGATGATCGT 58.855 45.455 7.12 0.00 0.00 3.73
912 913 3.764218 AGGCCTCCAATTGATGATGATC 58.236 45.455 7.12 0.00 0.00 2.92
913 914 3.897657 AGGCCTCCAATTGATGATGAT 57.102 42.857 7.12 0.00 0.00 2.45
914 915 3.675348 AAGGCCTCCAATTGATGATGA 57.325 42.857 5.23 0.00 0.00 2.92
915 916 3.449737 ACAAAGGCCTCCAATTGATGATG 59.550 43.478 19.49 0.00 0.00 3.07
916 917 3.703052 GACAAAGGCCTCCAATTGATGAT 59.297 43.478 19.49 0.00 0.00 2.45
917 918 3.091545 GACAAAGGCCTCCAATTGATGA 58.908 45.455 19.49 0.00 0.00 2.92
918 919 3.094572 AGACAAAGGCCTCCAATTGATG 58.905 45.455 19.49 6.17 0.00 3.07
921 922 5.467035 TTTTAGACAAAGGCCTCCAATTG 57.533 39.130 5.23 9.87 0.00 2.32
964 1778 2.110899 TCCAAGGCCTCCAATTGGTTTA 59.889 45.455 23.76 4.22 43.28 2.01
967 1781 0.040204 CTCCAAGGCCTCCAATTGGT 59.960 55.000 23.76 1.13 43.28 3.67
968 1782 0.040204 ACTCCAAGGCCTCCAATTGG 59.960 55.000 19.08 19.08 44.00 3.16
1032 1846 2.279784 CGGAGAATCTGGCTCGGC 60.280 66.667 0.00 0.00 38.01 5.54
1039 2153 1.279271 AGTGGGTTTCCGGAGAATCTG 59.721 52.381 3.34 0.00 42.57 2.90
1071 2185 3.010696 AGGAATCCACTCCTTTTTCCCTC 59.989 47.826 0.61 0.00 43.76 4.30
1101 2295 3.712907 GGGGAGGTGCGGTTGCTA 61.713 66.667 0.00 0.00 43.34 3.49
1120 2314 0.603975 GAGGGTCGCTGCTGAGTTTT 60.604 55.000 0.00 0.00 0.00 2.43
1124 2318 4.504916 CGGAGGGTCGCTGCTGAG 62.505 72.222 6.84 0.00 0.00 3.35
1179 2379 4.697756 CCTGCTTGGACGGGCGAA 62.698 66.667 0.00 0.00 38.35 4.70
1218 2418 2.444706 CGGGGAGGAGGCTGATGA 60.445 66.667 0.00 0.00 0.00 2.92
1250 2450 2.501610 GAGGCGGGTGATGACCTC 59.498 66.667 0.00 0.00 42.66 3.85
1527 2728 2.978824 GGCAGCAGGAGGTCGTAA 59.021 61.111 0.00 0.00 0.00 3.18
1612 2813 1.449601 CGAGGGTCGGGGAAATGTG 60.450 63.158 0.00 0.00 36.00 3.21
1833 3034 3.161450 TCCAGGCGAGGGGCATAC 61.161 66.667 0.00 0.00 46.16 2.39
1884 3085 0.173481 GTCTAGGCGCTGTGATGACA 59.827 55.000 7.64 0.00 0.00 3.58
1887 3088 1.150567 GCAGTCTAGGCGCTGTGATG 61.151 60.000 7.64 0.76 35.33 3.07
1892 3093 1.426423 CATATGCAGTCTAGGCGCTG 58.574 55.000 7.64 0.00 35.93 5.18
1908 3109 3.433598 GGCTATCCAGAAAGCACACCATA 60.434 47.826 0.00 0.00 40.61 2.74
1926 3127 2.884320 TGGAGTGTAGTCTTGTGGCTA 58.116 47.619 0.00 0.00 0.00 3.93
1980 3181 7.015487 AGGAATGAATGTGATTGTTCAAGGAAA 59.985 33.333 0.00 0.00 37.82 3.13
1984 3185 6.916440 TGAGGAATGAATGTGATTGTTCAAG 58.084 36.000 0.00 0.00 37.82 3.02
2004 3206 1.825474 ACACGACAGTATTCCCTGAGG 59.175 52.381 0.00 0.00 36.30 3.86
2011 3213 5.845953 CACAACATGAAACACGACAGTATTC 59.154 40.000 0.00 0.00 0.00 1.75
2020 3225 2.473530 AGCACACAACATGAAACACG 57.526 45.000 0.00 0.00 0.00 4.49
2086 3291 6.441274 TCAAGAATGAAAATCTTCACACTGC 58.559 36.000 0.00 0.00 44.28 4.40
2365 4385 0.108804 GCGATCTTGTGGGTCGAGAA 60.109 55.000 2.37 0.00 39.69 2.87
2510 4909 4.331968 TGGTGAATGTGTTATCCTGAACC 58.668 43.478 0.00 0.00 0.00 3.62
2513 4912 3.843619 TCCTGGTGAATGTGTTATCCTGA 59.156 43.478 0.00 0.00 0.00 3.86
2553 4952 1.200519 ATCCAGTTTAGCCGCCTACA 58.799 50.000 0.00 0.00 0.00 2.74
2716 5116 6.989659 TCGGATTACACATAAAGGGAGATAC 58.010 40.000 0.00 0.00 0.00 2.24
2721 5121 5.687166 AGTTCGGATTACACATAAAGGGA 57.313 39.130 0.00 0.00 0.00 4.20
2727 5127 7.972832 ACAGAAAAAGTTCGGATTACACATA 57.027 32.000 0.00 0.00 38.90 2.29
2729 5129 7.572353 GCATACAGAAAAAGTTCGGATTACACA 60.572 37.037 0.00 0.00 38.90 3.72
2737 5137 5.108385 AGTTGCATACAGAAAAAGTTCGG 57.892 39.130 0.00 0.00 38.90 4.30
2777 5177 2.610374 TGAAAACAAGTGCTGGTCGTAC 59.390 45.455 0.00 0.00 0.00 3.67
2798 5199 3.306019 CGGGCCTTTTGCAGTTCTAAAAT 60.306 43.478 0.84 0.00 43.89 1.82
2799 5200 2.035321 CGGGCCTTTTGCAGTTCTAAAA 59.965 45.455 0.84 0.00 43.89 1.52
2850 5251 6.016555 AGTTCATAACCAAGGGTAAATTGCT 58.983 36.000 0.00 0.00 33.12 3.91
2856 5257 4.650972 AGCAGTTCATAACCAAGGGTAA 57.349 40.909 0.00 0.00 33.12 2.85
2879 5280 6.436218 ACCCAACAACCTATTTCCAGAAATAC 59.564 38.462 8.43 0.00 40.99 1.89
3007 5419 7.466746 ACTGTTTCAGCAAACCATATTATGT 57.533 32.000 3.10 0.00 41.25 2.29
3008 5420 7.218773 CGAACTGTTTCAGCAAACCATATTATG 59.781 37.037 0.00 0.00 41.25 1.90
3072 5484 3.274288 CTGATAAAAGCACCCAGGACTC 58.726 50.000 0.00 0.00 0.00 3.36
3073 5485 2.619074 GCTGATAAAAGCACCCAGGACT 60.619 50.000 0.00 0.00 43.01 3.85
3074 5486 1.745653 GCTGATAAAAGCACCCAGGAC 59.254 52.381 0.00 0.00 43.01 3.85
3075 5487 2.128771 GCTGATAAAAGCACCCAGGA 57.871 50.000 0.00 0.00 43.01 3.86
3115 5528 3.887741 TGCTTGAATGATGAAACGTGTG 58.112 40.909 0.00 0.00 0.00 3.82
3274 5688 2.844348 ACCTGGTTACTCCTATGGTTGG 59.156 50.000 0.00 0.00 33.78 3.77
3280 5694 3.034635 CAGCTCACCTGGTTACTCCTAT 58.965 50.000 0.00 0.00 37.93 2.57
3301 5715 8.408601 ACAAATCCTGATCAATTATGTTAGCAC 58.591 33.333 0.00 0.00 0.00 4.40
3314 5728 1.739466 GCAAGCGACAAATCCTGATCA 59.261 47.619 0.00 0.00 0.00 2.92
3339 5753 6.069323 TCCTTCTGTACCCTTGCCAATATTTA 60.069 38.462 0.00 0.00 0.00 1.40
3347 5761 1.473434 CGATCCTTCTGTACCCTTGCC 60.473 57.143 0.00 0.00 0.00 4.52
3349 5763 3.522553 GAACGATCCTTCTGTACCCTTG 58.477 50.000 0.00 0.00 0.00 3.61
3366 5780 4.873768 ACCAAATTTTGCAAAAGGAACG 57.126 36.364 26.71 16.87 0.00 3.95
3385 5799 1.237285 ATGGCTCGTGCAGTTCAACC 61.237 55.000 12.07 0.00 41.91 3.77
3396 5810 4.706842 ACCTTTATATCCAATGGCTCGT 57.293 40.909 0.00 0.00 0.00 4.18
3397 5811 5.299279 ACAAACCTTTATATCCAATGGCTCG 59.701 40.000 0.00 0.00 0.00 5.03
3416 5830 3.206150 TCAGAGGAGTTGCTTCACAAAC 58.794 45.455 0.00 0.00 40.82 2.93
3460 5874 2.084610 TCAACGATTGGTGAGCTGAG 57.915 50.000 0.00 0.00 0.00 3.35
3533 5975 9.856488 TTTAATACTGCAAATATTTTTGGCGTA 57.144 25.926 10.14 6.95 42.09 4.42
3535 5977 7.838879 CGTTTAATACTGCAAATATTTTTGGCG 59.161 33.333 10.14 0.00 42.09 5.69
3536 5978 8.865001 TCGTTTAATACTGCAAATATTTTTGGC 58.135 29.630 10.14 0.00 42.09 4.52
3565 6010 5.720371 ATAGTTGTGGTATGCTGCAAAAA 57.280 34.783 6.36 0.00 0.00 1.94
3576 6021 5.300539 ACATTGTGTTGCAATAGTTGTGGTA 59.699 36.000 0.59 0.00 45.33 3.25
3581 6026 5.522456 ACAGACATTGTGTTGCAATAGTTG 58.478 37.500 0.59 0.41 45.33 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.