Multiple sequence alignment - TraesCS1D01G228700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G228700 chr1D 100.000 2777 0 0 1 2777 316677435 316680211 0.000000e+00 5129.0
1 TraesCS1D01G228700 chr1D 87.059 85 9 2 2037 2120 8550085 8550002 8.190000e-16 95.3
2 TraesCS1D01G228700 chr1B 91.204 1512 86 25 5 1480 428800724 428802224 0.000000e+00 2012.0
3 TraesCS1D01G228700 chr1B 84.725 491 58 14 2026 2508 428802690 428803171 2.500000e-130 475.0
4 TraesCS1D01G228700 chr1B 85.536 401 31 17 1591 1971 428802219 428802612 7.210000e-106 394.0
5 TraesCS1D01G228700 chr1A 94.286 595 25 7 894 1485 397769666 397770254 0.000000e+00 902.0
6 TraesCS1D01G228700 chr1A 85.830 494 43 11 1 485 397769060 397769535 1.490000e-137 499.0
7 TraesCS1D01G228700 chr1A 82.063 446 37 28 2095 2527 397770849 397771264 9.530000e-90 340.0
8 TraesCS1D01G228700 chr1A 86.364 308 24 8 1591 1889 397770242 397770540 1.240000e-83 320.0
9 TraesCS1D01G228700 chr1A 95.312 128 5 1 736 863 397769539 397769665 4.690000e-48 202.0
10 TraesCS1D01G228700 chr1A 82.353 102 6 8 1897 1987 397770623 397770723 8.250000e-11 78.7
11 TraesCS1D01G228700 chr7D 79.701 468 76 13 998 1462 586783533 586783984 1.240000e-83 320.0
12 TraesCS1D01G228700 chr7D 86.111 216 30 0 1247 1462 586765905 586766120 1.660000e-57 233.0
13 TraesCS1D01G228700 chr7D 88.824 170 15 3 966 1131 586765678 586765847 3.630000e-49 206.0
14 TraesCS1D01G228700 chr7D 87.379 103 9 3 1666 1766 586766116 586766216 6.290000e-22 115.0
15 TraesCS1D01G228700 chr7D 87.379 103 9 3 1666 1766 586783980 586784080 6.290000e-22 115.0
16 TraesCS1D01G228700 chr7D 95.455 44 2 0 1509 1552 614287912 614287869 1.380000e-08 71.3
17 TraesCS1D01G228700 chr7B 87.037 216 28 0 1247 1462 657479569 657479784 7.680000e-61 244.0
18 TraesCS1D01G228700 chr7B 87.037 216 28 0 1247 1462 657496503 657496718 7.680000e-61 244.0
19 TraesCS1D01G228700 chr7B 85.586 222 32 0 1241 1462 657500714 657500935 1.660000e-57 233.0
20 TraesCS1D01G228700 chr7B 86.022 186 24 2 948 1132 657496223 657496407 6.070000e-47 198.0
21 TraesCS1D01G228700 chr7B 85.484 186 25 2 948 1132 657479289 657479473 2.820000e-45 193.0
22 TraesCS1D01G228700 chr7B 97.826 46 1 0 1507 1552 383875535 383875490 2.290000e-11 80.5
23 TraesCS1D01G228700 chr7B 95.349 43 2 0 1509 1551 164155528 164155570 4.960000e-08 69.4
24 TraesCS1D01G228700 chr7A 86.574 216 29 0 1247 1462 677871600 677871815 3.570000e-59 239.0
25 TraesCS1D01G228700 chr7A 93.284 134 9 0 998 1131 677871397 677871530 6.070000e-47 198.0
26 TraesCS1D01G228700 chr7A 87.059 85 9 2 2037 2120 114571208 114571291 8.190000e-16 95.3
27 TraesCS1D01G228700 chr7A 87.059 85 9 2 2037 2120 231218617 231218700 8.190000e-16 95.3
28 TraesCS1D01G228700 chr7A 87.059 85 9 2 2037 2120 547993304 547993221 8.190000e-16 95.3
29 TraesCS1D01G228700 chr7A 87.059 85 9 2 2037 2120 620463494 620463577 8.190000e-16 95.3
30 TraesCS1D01G228700 chr7A 87.059 85 9 2 2037 2120 649937535 649937452 8.190000e-16 95.3
31 TraesCS1D01G228700 chr5B 95.726 117 5 0 992 1108 445173796 445173912 3.650000e-44 189.0
32 TraesCS1D01G228700 chr5B 89.873 79 5 3 2694 2771 138777533 138777609 6.330000e-17 99.0
33 TraesCS1D01G228700 chr5B 91.667 60 3 1 1509 1566 14247471 14247412 6.370000e-12 82.4
34 TraesCS1D01G228700 chr5D 94.872 117 6 0 992 1108 373763084 373763200 1.700000e-42 183.0
35 TraesCS1D01G228700 chr5D 92.000 50 3 1 1508 1557 44425352 44425304 4.960000e-08 69.4
36 TraesCS1D01G228700 chr2D 82.110 218 32 5 1251 1463 565586543 565586328 2.200000e-41 180.0
37 TraesCS1D01G228700 chr2D 90.476 84 6 2 2694 2777 67547592 67547511 2.920000e-20 110.0
38 TraesCS1D01G228700 chr2D 91.250 80 5 2 2695 2774 67547507 67547584 1.050000e-19 108.0
39 TraesCS1D01G228700 chr2D 88.372 86 10 0 1666 1751 565860989 565860904 1.360000e-18 104.0
40 TraesCS1D01G228700 chr2D 87.356 87 11 0 1665 1751 565758770 565758684 1.760000e-17 100.0
41 TraesCS1D01G228700 chr2D 90.196 51 3 2 1504 1552 154900256 154900306 6.420000e-07 65.8
42 TraesCS1D01G228700 chr6D 86.429 140 15 2 967 1106 106048817 106048952 1.720000e-32 150.0
43 TraesCS1D01G228700 chr6D 95.349 43 2 0 1509 1551 452956307 452956349 4.960000e-08 69.4
44 TraesCS1D01G228700 chr4D 92.857 84 5 1 2694 2777 481110366 481110284 1.350000e-23 121.0
45 TraesCS1D01G228700 chr4D 90.196 51 5 0 1501 1551 49518094 49518044 1.780000e-07 67.6
46 TraesCS1D01G228700 chrUn 89.412 85 5 3 2690 2774 102149023 102149103 1.360000e-18 104.0
47 TraesCS1D01G228700 chr6B 87.368 95 7 4 2683 2774 681921670 681921762 1.360000e-18 104.0
48 TraesCS1D01G228700 chr6B 87.209 86 8 2 2694 2777 681921770 681921686 8.190000e-16 95.3
49 TraesCS1D01G228700 chr2B 88.372 86 10 0 1666 1751 678198044 678197959 1.360000e-18 104.0
50 TraesCS1D01G228700 chr2B 87.952 83 9 1 2695 2777 715346409 715346328 2.280000e-16 97.1
51 TraesCS1D01G228700 chr2A 88.372 86 10 0 1666 1751 706200529 706200444 1.360000e-18 104.0
52 TraesCS1D01G228700 chr2A 87.356 87 11 0 1665 1751 706001041 706000955 1.760000e-17 100.0
53 TraesCS1D01G228700 chr2A 88.235 85 8 2 2037 2120 770855117 770855200 1.760000e-17 100.0
54 TraesCS1D01G228700 chr2A 88.889 81 8 1 2691 2771 522506860 522506939 6.330000e-17 99.0
55 TraesCS1D01G228700 chr2A 87.059 85 9 2 2037 2120 770893519 770893602 8.190000e-16 95.3
56 TraesCS1D01G228700 chr4A 95.455 44 2 0 1508 1551 626642850 626642893 1.380000e-08 71.3
57 TraesCS1D01G228700 chr4B 96.875 32 1 0 1552 1583 4187798 4187767 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G228700 chr1D 316677435 316680211 2776 False 5129.000000 5129 100.000000 1 2777 1 chr1D.!!$F1 2776
1 TraesCS1D01G228700 chr1B 428800724 428803171 2447 False 960.333333 2012 87.155000 5 2508 3 chr1B.!!$F1 2503
2 TraesCS1D01G228700 chr1A 397769060 397771264 2204 False 390.283333 902 87.701333 1 2527 6 chr1A.!!$F1 2526
3 TraesCS1D01G228700 chr7D 586783533 586784080 547 False 217.500000 320 83.540000 998 1766 2 chr7D.!!$F2 768
4 TraesCS1D01G228700 chr7B 657496223 657500935 4712 False 225.000000 244 86.215000 948 1462 3 chr7B.!!$F3 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
359 366 0.036388 AACCACCTATGTGCACTCGG 60.036 55.0 19.41 16.85 41.35 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2402 0.177604 CTCGCTGATCTGGAGCCTTT 59.822 55.0 1.46 0.0 32.41 3.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
102 104 6.873605 ACAACATGATCTGAAAATCTACACGA 59.126 34.615 0.00 0.00 0.00 4.35
113 115 4.618920 AATCTACACGACCAACCTCTTT 57.381 40.909 0.00 0.00 0.00 2.52
225 230 6.207417 ACCTCAATTACTTGTGTTTCATCCTG 59.793 38.462 0.00 0.00 33.87 3.86
234 239 7.327975 ACTTGTGTTTCATCCTGATCGTAATA 58.672 34.615 0.00 0.00 0.00 0.98
293 300 3.392947 TGTGACACCTTCCCTACATTTCA 59.607 43.478 2.45 0.00 0.00 2.69
357 364 2.472695 TCAACCACCTATGTGCACTC 57.527 50.000 19.41 0.00 41.35 3.51
359 366 0.036388 AACCACCTATGTGCACTCGG 60.036 55.000 19.41 16.85 41.35 4.63
382 389 5.155905 GGGGACATTCTCCTCCTATAGAAA 58.844 45.833 0.00 0.00 39.39 2.52
537 547 4.589908 ACCCTGTTTAGCTATTTCCACTG 58.410 43.478 0.00 0.00 0.00 3.66
538 548 4.288626 ACCCTGTTTAGCTATTTCCACTGA 59.711 41.667 0.00 0.00 0.00 3.41
551 561 1.171308 CCACTGACAGGCAAAGGATG 58.829 55.000 7.51 0.00 0.00 3.51
581 592 2.464865 GTAGTGCGTCACTCATCCATC 58.535 52.381 14.38 0.00 41.21 3.51
614 625 4.794246 CGAGTTAACAAGGAAGAGACGATC 59.206 45.833 8.61 0.00 0.00 3.69
618 630 3.533606 ACAAGGAAGAGACGATCCATG 57.466 47.619 0.00 0.00 39.65 3.66
642 654 1.337118 AACATGCGGTTGGATGGTTT 58.663 45.000 0.00 0.00 41.63 3.27
648 660 1.531739 CGGTTGGATGGTTTGGTGGG 61.532 60.000 0.00 0.00 0.00 4.61
657 669 0.038166 GGTTTGGTGGGCAGAGATGA 59.962 55.000 0.00 0.00 0.00 2.92
685 697 1.092345 GGAGTGAGGAAAGATGCGGC 61.092 60.000 0.00 0.00 0.00 6.53
688 700 0.459585 GTGAGGAAAGATGCGGCGTA 60.460 55.000 9.37 3.65 0.00 4.42
689 701 0.464036 TGAGGAAAGATGCGGCGTAT 59.536 50.000 11.03 11.03 0.00 3.06
694 706 1.125021 GAAAGATGCGGCGTATGATCG 59.875 52.381 16.86 0.00 0.00 3.69
699 711 0.595567 TGCGGCGTATGATCGGTTAC 60.596 55.000 9.37 0.00 0.00 2.50
720 732 1.486310 CAGAGGGGAAATCACGATCCA 59.514 52.381 0.00 0.00 37.46 3.41
721 733 1.765314 AGAGGGGAAATCACGATCCAG 59.235 52.381 0.00 0.00 37.46 3.86
748 760 0.869068 TGACGGTGGTTACGCATTTG 59.131 50.000 0.00 0.00 34.00 2.32
855 870 0.294014 GTTACTTTCGTAGCGAGCGC 59.706 55.000 6.78 6.78 37.14 5.92
950 966 1.610086 ACCCCATTACCCACGACGA 60.610 57.895 0.00 0.00 0.00 4.20
951 967 0.979187 ACCCCATTACCCACGACGAT 60.979 55.000 0.00 0.00 0.00 3.73
952 968 0.249741 CCCCATTACCCACGACGATC 60.250 60.000 0.00 0.00 0.00 3.69
960 976 0.645355 CCCACGACGATCATCAAACG 59.355 55.000 0.00 0.00 0.00 3.60
1156 1209 0.391661 TTGGCTTGAGATCGTCTGCC 60.392 55.000 13.36 13.36 42.31 4.85
1157 1210 1.219124 GGCTTGAGATCGTCTGCCA 59.781 57.895 14.73 0.00 41.88 4.92
1160 1213 0.175302 CTTGAGATCGTCTGCCAGCT 59.825 55.000 0.00 0.00 0.00 4.24
1288 1380 4.873129 GCGGCTCATCTTCGCGGA 62.873 66.667 6.13 0.00 40.06 5.54
1301 1393 2.046892 GCGGAGAAGCAGCTGGAA 60.047 61.111 17.12 0.00 37.05 3.53
1476 1568 6.031471 TGCCGCAAGTACGTGTATATATATG 58.969 40.000 10.54 0.00 0.00 1.78
1477 1569 6.127952 TGCCGCAAGTACGTGTATATATATGA 60.128 38.462 10.54 0.00 0.00 2.15
1478 1570 6.195983 GCCGCAAGTACGTGTATATATATGAC 59.804 42.308 10.54 1.74 0.00 3.06
1479 1571 6.690098 CCGCAAGTACGTGTATATATATGACC 59.310 42.308 10.54 0.00 0.00 4.02
1480 1572 7.245604 CGCAAGTACGTGTATATATATGACCA 58.754 38.462 10.54 0.00 0.00 4.02
1481 1573 7.913821 CGCAAGTACGTGTATATATATGACCAT 59.086 37.037 10.54 0.00 0.00 3.55
1482 1574 9.020813 GCAAGTACGTGTATATATATGACCATG 57.979 37.037 10.54 7.32 0.00 3.66
1483 1575 9.020813 CAAGTACGTGTATATATATGACCATGC 57.979 37.037 5.44 0.00 0.00 4.06
1484 1576 8.288689 AGTACGTGTATATATATGACCATGCA 57.711 34.615 5.44 0.00 0.00 3.96
1485 1577 8.745590 AGTACGTGTATATATATGACCATGCAA 58.254 33.333 5.44 0.00 0.00 4.08
1486 1578 9.361315 GTACGTGTATATATATGACCATGCAAA 57.639 33.333 5.44 0.00 0.00 3.68
1487 1579 8.479313 ACGTGTATATATATGACCATGCAAAG 57.521 34.615 5.44 0.00 0.00 2.77
1488 1580 7.064609 ACGTGTATATATATGACCATGCAAAGC 59.935 37.037 5.44 0.00 0.00 3.51
1489 1581 7.465916 CGTGTATATATATGACCATGCAAAGCC 60.466 40.741 5.44 0.00 0.00 4.35
1490 1582 6.828273 TGTATATATATGACCATGCAAAGCCC 59.172 38.462 5.44 0.00 0.00 5.19
1491 1583 2.457813 ATATGACCATGCAAAGCCCA 57.542 45.000 0.00 0.00 0.00 5.36
1492 1584 2.457813 TATGACCATGCAAAGCCCAT 57.542 45.000 0.00 0.00 0.00 4.00
1493 1585 0.828022 ATGACCATGCAAAGCCCATG 59.172 50.000 0.00 0.00 39.74 3.66
1494 1586 0.251698 TGACCATGCAAAGCCCATGA 60.252 50.000 0.00 0.00 41.97 3.07
1495 1587 1.117150 GACCATGCAAAGCCCATGAT 58.883 50.000 0.00 0.00 41.97 2.45
1496 1588 1.068127 GACCATGCAAAGCCCATGATC 59.932 52.381 0.00 0.00 41.97 2.92
1497 1589 1.116308 CCATGCAAAGCCCATGATCA 58.884 50.000 0.00 0.00 41.97 2.92
1498 1590 1.068588 CCATGCAAAGCCCATGATCAG 59.931 52.381 0.09 0.00 41.97 2.90
1499 1591 2.028876 CATGCAAAGCCCATGATCAGA 58.971 47.619 0.09 0.00 41.97 3.27
1500 1592 2.447408 TGCAAAGCCCATGATCAGAT 57.553 45.000 0.09 0.00 0.00 2.90
1501 1593 2.028876 TGCAAAGCCCATGATCAGATG 58.971 47.619 0.09 0.00 0.00 2.90
1502 1594 2.304092 GCAAAGCCCATGATCAGATGA 58.696 47.619 0.09 0.00 0.00 2.92
1503 1595 2.293677 GCAAAGCCCATGATCAGATGAG 59.706 50.000 0.09 0.00 0.00 2.90
1504 1596 3.816994 CAAAGCCCATGATCAGATGAGA 58.183 45.455 0.09 0.00 0.00 3.27
1505 1597 4.399219 CAAAGCCCATGATCAGATGAGAT 58.601 43.478 0.09 0.00 0.00 2.75
1506 1598 3.985019 AGCCCATGATCAGATGAGATC 57.015 47.619 0.09 0.00 43.69 2.75
1507 1599 3.522759 AGCCCATGATCAGATGAGATCT 58.477 45.455 0.09 0.00 43.76 2.75
1508 1600 4.685807 AGCCCATGATCAGATGAGATCTA 58.314 43.478 0.09 0.00 43.76 1.98
1509 1601 4.712829 AGCCCATGATCAGATGAGATCTAG 59.287 45.833 0.09 0.00 43.76 2.43
1510 1602 4.467082 GCCCATGATCAGATGAGATCTAGT 59.533 45.833 0.09 0.00 43.76 2.57
1511 1603 5.655974 GCCCATGATCAGATGAGATCTAGTA 59.344 44.000 0.09 0.00 43.76 1.82
1512 1604 6.405731 GCCCATGATCAGATGAGATCTAGTAC 60.406 46.154 0.09 0.00 43.76 2.73
1513 1605 6.891361 CCCATGATCAGATGAGATCTAGTACT 59.109 42.308 0.09 0.00 43.76 2.73
1514 1606 7.067372 CCCATGATCAGATGAGATCTAGTACTC 59.933 44.444 0.00 10.39 43.76 2.59
1515 1607 7.067372 CCATGATCAGATGAGATCTAGTACTCC 59.933 44.444 0.00 0.00 43.76 3.85
1516 1608 6.480763 TGATCAGATGAGATCTAGTACTCCC 58.519 44.000 0.00 7.74 43.76 4.30
1517 1609 6.274436 TGATCAGATGAGATCTAGTACTCCCT 59.726 42.308 0.00 0.00 43.76 4.20
1518 1610 6.121776 TCAGATGAGATCTAGTACTCCCTC 57.878 45.833 0.00 2.89 37.58 4.30
1519 1611 5.013704 TCAGATGAGATCTAGTACTCCCTCC 59.986 48.000 0.00 0.00 37.58 4.30
1520 1612 3.773418 TGAGATCTAGTACTCCCTCCG 57.227 52.381 0.00 0.00 32.84 4.63
1521 1613 3.047115 TGAGATCTAGTACTCCCTCCGT 58.953 50.000 0.00 0.00 32.84 4.69
1522 1614 4.229639 TGAGATCTAGTACTCCCTCCGTA 58.770 47.826 0.00 0.00 32.84 4.02
1523 1615 4.657504 TGAGATCTAGTACTCCCTCCGTAA 59.342 45.833 0.00 0.00 32.84 3.18
1524 1616 5.131642 TGAGATCTAGTACTCCCTCCGTAAA 59.868 44.000 0.00 0.00 32.84 2.01
1525 1617 6.183361 TGAGATCTAGTACTCCCTCCGTAAAT 60.183 42.308 0.00 0.00 32.84 1.40
1526 1618 6.612741 AGATCTAGTACTCCCTCCGTAAATT 58.387 40.000 0.00 0.00 0.00 1.82
1527 1619 7.753630 AGATCTAGTACTCCCTCCGTAAATTA 58.246 38.462 0.00 0.00 0.00 1.40
1528 1620 8.223330 AGATCTAGTACTCCCTCCGTAAATTAA 58.777 37.037 0.00 0.00 0.00 1.40
1529 1621 8.953223 ATCTAGTACTCCCTCCGTAAATTAAT 57.047 34.615 0.00 0.00 0.00 1.40
1537 1629 9.993454 ACTCCCTCCGTAAATTAATATAAGAAC 57.007 33.333 0.00 0.00 0.00 3.01
1538 1630 9.136952 CTCCCTCCGTAAATTAATATAAGAACG 57.863 37.037 0.00 0.00 0.00 3.95
1539 1631 8.641541 TCCCTCCGTAAATTAATATAAGAACGT 58.358 33.333 0.00 0.00 0.00 3.99
1540 1632 9.264719 CCCTCCGTAAATTAATATAAGAACGTT 57.735 33.333 0.00 0.00 0.00 3.99
1557 1649 7.936950 AGAACGTTTAGGTCACTAAGTTTAC 57.063 36.000 0.46 0.00 40.12 2.01
1558 1650 7.491682 AGAACGTTTAGGTCACTAAGTTTACA 58.508 34.615 0.46 0.00 40.12 2.41
1559 1651 7.650903 AGAACGTTTAGGTCACTAAGTTTACAG 59.349 37.037 0.46 0.00 40.12 2.74
1560 1652 7.042797 ACGTTTAGGTCACTAAGTTTACAGA 57.957 36.000 0.00 0.00 40.12 3.41
1561 1653 7.144000 ACGTTTAGGTCACTAAGTTTACAGAG 58.856 38.462 0.00 0.00 40.12 3.35
1562 1654 6.585322 CGTTTAGGTCACTAAGTTTACAGAGG 59.415 42.308 0.00 0.00 40.12 3.69
1563 1655 6.600882 TTAGGTCACTAAGTTTACAGAGGG 57.399 41.667 0.00 0.00 34.35 4.30
1564 1656 4.748701 AGGTCACTAAGTTTACAGAGGGA 58.251 43.478 0.00 0.00 0.00 4.20
1565 1657 4.773149 AGGTCACTAAGTTTACAGAGGGAG 59.227 45.833 0.00 0.00 0.00 4.30
1566 1658 4.527427 GGTCACTAAGTTTACAGAGGGAGT 59.473 45.833 0.00 0.00 0.00 3.85
1567 1659 5.713861 GGTCACTAAGTTTACAGAGGGAGTA 59.286 44.000 0.00 0.00 0.00 2.59
1568 1660 6.127675 GGTCACTAAGTTTACAGAGGGAGTAG 60.128 46.154 0.00 0.00 0.00 2.57
1569 1661 6.433716 GTCACTAAGTTTACAGAGGGAGTAGT 59.566 42.308 0.00 0.00 0.00 2.73
1570 1662 7.609532 GTCACTAAGTTTACAGAGGGAGTAGTA 59.390 40.741 0.00 0.00 0.00 1.82
1571 1663 7.609532 TCACTAAGTTTACAGAGGGAGTAGTAC 59.390 40.741 0.00 0.00 0.00 2.73
1572 1664 7.611079 CACTAAGTTTACAGAGGGAGTAGTACT 59.389 40.741 1.37 1.37 0.00 2.73
1573 1665 7.828717 ACTAAGTTTACAGAGGGAGTAGTACTC 59.171 40.741 20.24 20.24 44.32 2.59
1574 1666 6.391479 AGTTTACAGAGGGAGTAGTACTCT 57.609 41.667 25.70 10.54 44.46 3.24
1575 1667 7.507797 AGTTTACAGAGGGAGTAGTACTCTA 57.492 40.000 25.70 9.76 44.46 2.43
1576 1668 7.337938 AGTTTACAGAGGGAGTAGTACTCTAC 58.662 42.308 25.70 19.38 44.46 2.59
1623 1719 5.064834 GCATGCATGAGTTCATATGATCGAT 59.935 40.000 30.64 0.00 34.26 3.59
1627 1723 5.747675 GCATGAGTTCATATGATCGATCGAT 59.252 40.000 29.76 29.76 34.43 3.59
1628 1724 6.074941 GCATGAGTTCATATGATCGATCGATC 60.075 42.308 38.90 38.90 41.74 3.69
1629 1725 6.140422 CATGAGTTCATATGATCGATCGATCG 59.860 42.308 38.64 35.91 42.91 3.69
1644 1740 3.382855 TCGATCGACCGAAACTTTTTGA 58.617 40.909 15.15 0.00 35.42 2.69
1653 1749 6.459670 ACCGAAACTTTTTGATAACCTGTT 57.540 33.333 0.00 0.00 0.00 3.16
1695 1791 3.003173 CGGCTTCCCCTGAGGTCA 61.003 66.667 0.00 0.00 36.75 4.02
1756 1852 0.401738 CAGGCCCAAGAAGAGGTTCA 59.598 55.000 0.00 0.00 34.82 3.18
1770 1866 3.499918 AGAGGTTCATCAACAAGCTTTCG 59.500 43.478 0.00 0.00 33.70 3.46
1789 1885 2.422479 TCGAACTGAAGATCGAATCGGT 59.578 45.455 9.86 0.00 44.33 4.69
1791 1887 3.969352 CGAACTGAAGATCGAATCGGTAG 59.031 47.826 1.76 0.00 41.91 3.18
1817 1920 2.672414 AGAAGGGAAGGACCGTCTG 58.328 57.895 7.39 0.00 45.67 3.51
1832 1935 6.072673 AGGACCGTCTGTGAATAAATTGTTTC 60.073 38.462 0.00 0.00 0.00 2.78
1833 1936 6.293735 GGACCGTCTGTGAATAAATTGTTTCA 60.294 38.462 0.00 0.43 0.00 2.69
1836 1939 7.807907 ACCGTCTGTGAATAAATTGTTTCATTC 59.192 33.333 6.60 0.00 34.60 2.67
1851 1954 5.918011 TGTTTCATTCGGTTTATCAAGTTGC 59.082 36.000 0.00 0.00 0.00 4.17
1855 1958 7.441890 TCATTCGGTTTATCAAGTTGCTTTA 57.558 32.000 0.00 0.00 0.00 1.85
1856 1959 7.526608 TCATTCGGTTTATCAAGTTGCTTTAG 58.473 34.615 0.00 0.00 0.00 1.85
1875 1978 9.487790 TGCTTTAGTGATTTTGAATAAAAAGGG 57.512 29.630 0.00 0.00 41.00 3.95
1898 2076 6.127842 GGGTGATATGTTCTAGCTAGCTAGTC 60.128 46.154 38.27 31.83 44.59 2.59
1906 2084 6.434652 TGTTCTAGCTAGCTAGTCTGAAGTTT 59.565 38.462 38.27 10.11 44.59 2.66
1919 2097 3.005050 TCTGAAGTTTCAAGCCATGCAAG 59.995 43.478 0.00 0.00 36.64 4.01
1928 2106 3.088532 CAAGCCATGCAAGGGTTACTTA 58.911 45.455 23.60 0.00 46.95 2.24
1934 2112 5.010282 CCATGCAAGGGTTACTTAAGAGTT 58.990 41.667 10.09 0.00 37.29 3.01
1936 2114 4.394729 TGCAAGGGTTACTTAAGAGTTGG 58.605 43.478 10.09 0.00 37.29 3.77
1976 2164 8.764287 CCACATATTCTGTTGGTTTTTCTTTTC 58.236 33.333 0.00 0.00 35.29 2.29
1977 2165 9.533253 CACATATTCTGTTGGTTTTTCTTTTCT 57.467 29.630 0.00 0.00 35.29 2.52
1982 2170 7.899178 TCTGTTGGTTTTTCTTTTCTTTTCC 57.101 32.000 0.00 0.00 0.00 3.13
2010 2202 5.621197 TTTTGGAGGAAATCGTGTATGTG 57.379 39.130 0.00 0.00 0.00 3.21
2016 2208 2.870411 GGAAATCGTGTATGTGTAGGGC 59.130 50.000 0.00 0.00 0.00 5.19
2017 2209 3.527533 GAAATCGTGTATGTGTAGGGCA 58.472 45.455 0.00 0.00 0.00 5.36
2018 2210 3.838244 AATCGTGTATGTGTAGGGCAT 57.162 42.857 0.00 0.00 0.00 4.40
2020 2212 4.948341 ATCGTGTATGTGTAGGGCATAA 57.052 40.909 0.00 0.00 31.54 1.90
2021 2213 4.739587 TCGTGTATGTGTAGGGCATAAA 57.260 40.909 0.00 0.00 31.54 1.40
2022 2214 5.284861 TCGTGTATGTGTAGGGCATAAAT 57.715 39.130 0.00 0.00 31.54 1.40
2023 2215 6.408107 TCGTGTATGTGTAGGGCATAAATA 57.592 37.500 0.00 0.00 31.54 1.40
2024 2216 6.452242 TCGTGTATGTGTAGGGCATAAATAG 58.548 40.000 0.00 0.00 31.54 1.73
2050 2286 1.588674 AAACACACGAATCTCCGCAA 58.411 45.000 0.00 0.00 0.00 4.85
2084 2320 9.775854 ATGGCATGAGATTTAGATATGCTATAC 57.224 33.333 0.00 0.00 41.89 1.47
2092 2328 9.040259 AGATTTAGATATGCTATACTTGAGGCA 57.960 33.333 0.00 0.00 39.06 4.75
2099 2335 5.201713 TGCTATACTTGAGGCACATCTAC 57.798 43.478 0.00 0.00 0.00 2.59
2158 2396 4.354087 GGGGACTGGGGAATAGAATTACAT 59.646 45.833 0.00 0.00 0.00 2.29
2164 2402 6.126883 ACTGGGGAATAGAATTACATCACGAA 60.127 38.462 0.00 0.00 0.00 3.85
2172 2410 4.636206 AGAATTACATCACGAAAAGGCTCC 59.364 41.667 0.00 0.00 0.00 4.70
2181 2419 1.012841 GAAAAGGCTCCAGATCAGCG 58.987 55.000 0.00 0.00 37.81 5.18
2228 2466 3.181469 TGGTGCATCCTAGTATCGAAACC 60.181 47.826 0.00 0.00 37.07 3.27
2247 2485 2.875296 CCTTCAAAGGTTCCACATCCA 58.125 47.619 0.32 0.00 41.41 3.41
2248 2486 2.558359 CCTTCAAAGGTTCCACATCCAC 59.442 50.000 0.32 0.00 41.41 4.02
2250 2488 3.304911 TCAAAGGTTCCACATCCACAA 57.695 42.857 0.00 0.00 0.00 3.33
2251 2489 3.843422 TCAAAGGTTCCACATCCACAAT 58.157 40.909 0.00 0.00 0.00 2.71
2301 2539 4.687018 TGACATATTAACCACGTGACACAC 59.313 41.667 19.30 0.00 0.00 3.82
2302 2540 4.633175 ACATATTAACCACGTGACACACA 58.367 39.130 19.30 0.00 33.40 3.72
2303 2541 4.449743 ACATATTAACCACGTGACACACAC 59.550 41.667 19.30 0.00 45.11 3.82
2304 2542 1.654317 TTAACCACGTGACACACACC 58.346 50.000 19.30 0.00 45.73 4.16
2327 2571 7.383843 CACCTGGTAAACAATCCAAACAATTAC 59.616 37.037 0.00 0.00 33.06 1.89
2371 2615 4.756135 ACATGTTGCAACAATTGGGAAATC 59.244 37.500 34.06 2.01 43.03 2.17
2456 2701 4.342092 CCCCCTTTCCATTACTTGCATAAG 59.658 45.833 0.00 0.00 39.86 1.73
2461 2706 7.310361 CCCTTTCCATTACTTGCATAAGGAAAA 60.310 37.037 16.19 2.54 40.06 2.29
2465 2710 7.925993 TCCATTACTTGCATAAGGAAAATACG 58.074 34.615 0.00 0.00 40.06 3.06
2471 2716 7.527457 ACTTGCATAAGGAAAATACGAAGTTC 58.473 34.615 0.00 0.00 39.19 3.01
2472 2717 7.174253 ACTTGCATAAGGAAAATACGAAGTTCA 59.826 33.333 3.32 0.00 39.19 3.18
2477 2722 5.485209 AGGAAAATACGAAGTTCAGGACT 57.515 39.130 3.32 0.00 37.78 3.85
2517 2763 3.544684 AGCGAGTTGGATGCATTATCAA 58.455 40.909 0.00 3.83 37.54 2.57
2527 2773 4.646492 GGATGCATTATCAAGAAACCCACT 59.354 41.667 0.00 0.00 37.54 4.00
2528 2774 5.450965 GGATGCATTATCAAGAAACCCACTG 60.451 44.000 0.00 0.00 37.54 3.66
2529 2775 3.193267 TGCATTATCAAGAAACCCACTGC 59.807 43.478 0.00 0.00 0.00 4.40
2530 2776 3.731867 GCATTATCAAGAAACCCACTGCG 60.732 47.826 0.00 0.00 0.00 5.18
2531 2777 1.448985 TATCAAGAAACCCACTGCGC 58.551 50.000 0.00 0.00 0.00 6.09
2535 2781 4.683334 GAAACCCACTGCGCACGC 62.683 66.667 5.66 8.33 42.35 5.34
2553 3551 3.658351 CGCAAGTTCCACATAAGTAGC 57.342 47.619 0.00 0.00 0.00 3.58
2556 3554 3.000041 CAAGTTCCACATAAGTAGCGCA 59.000 45.455 11.47 0.00 0.00 6.09
2576 3574 3.059166 CAAGCAACAAAACATAGGCCAC 58.941 45.455 5.01 0.00 0.00 5.01
2578 3576 1.696988 CAACAAAACATAGGCCACGC 58.303 50.000 5.01 0.00 0.00 5.34
2580 3578 1.544724 ACAAAACATAGGCCACGCAT 58.455 45.000 5.01 0.00 0.00 4.73
2581 3579 1.202114 ACAAAACATAGGCCACGCATG 59.798 47.619 5.01 5.27 0.00 4.06
2582 3580 0.173255 AAAACATAGGCCACGCATGC 59.827 50.000 7.91 7.91 0.00 4.06
2592 3590 4.365111 ACGCATGCCCACCCACAT 62.365 61.111 13.15 0.00 0.00 3.21
2593 3591 3.829044 CGCATGCCCACCCACATG 61.829 66.667 13.15 0.00 45.19 3.21
2594 3592 2.362760 GCATGCCCACCCACATGA 60.363 61.111 6.36 0.00 45.23 3.07
2595 3593 1.759299 GCATGCCCACCCACATGAT 60.759 57.895 6.36 0.00 45.23 2.45
2597 3595 0.396001 CATGCCCACCCACATGATCA 60.396 55.000 0.00 0.00 45.23 2.92
2598 3596 0.106369 ATGCCCACCCACATGATCAG 60.106 55.000 0.00 0.00 0.00 2.90
2600 3598 1.303948 CCCACCCACATGATCAGCA 59.696 57.895 0.00 0.00 0.00 4.41
2601 3599 1.033746 CCCACCCACATGATCAGCAC 61.034 60.000 0.00 0.00 0.00 4.40
2604 3602 1.221566 CCCACATGATCAGCACCGA 59.778 57.895 0.00 0.00 0.00 4.69
2605 3603 0.392863 CCCACATGATCAGCACCGAA 60.393 55.000 0.00 0.00 0.00 4.30
2609 3607 2.421073 CACATGATCAGCACCGAAACAT 59.579 45.455 0.00 0.00 0.00 2.71
2610 3608 3.084039 ACATGATCAGCACCGAAACATT 58.916 40.909 0.00 0.00 0.00 2.71
2612 3610 3.057969 TGATCAGCACCGAAACATTCT 57.942 42.857 0.00 0.00 0.00 2.40
2613 3611 4.200838 TGATCAGCACCGAAACATTCTA 57.799 40.909 0.00 0.00 0.00 2.10
2614 3612 4.183865 TGATCAGCACCGAAACATTCTAG 58.816 43.478 0.00 0.00 0.00 2.43
2615 3613 2.346803 TCAGCACCGAAACATTCTAGC 58.653 47.619 0.00 0.00 0.00 3.42
2616 3614 2.076100 CAGCACCGAAACATTCTAGCA 58.924 47.619 0.00 0.00 0.00 3.49
2617 3615 2.094894 CAGCACCGAAACATTCTAGCAG 59.905 50.000 0.00 0.00 0.00 4.24
2618 3616 1.202076 GCACCGAAACATTCTAGCAGC 60.202 52.381 0.00 0.00 0.00 5.25
2619 3617 2.076100 CACCGAAACATTCTAGCAGCA 58.924 47.619 0.00 0.00 0.00 4.41
2620 3618 2.483877 CACCGAAACATTCTAGCAGCAA 59.516 45.455 0.00 0.00 0.00 3.91
2623 3621 3.058293 CCGAAACATTCTAGCAGCAACAA 60.058 43.478 0.00 0.00 0.00 2.83
2624 3622 4.536065 CGAAACATTCTAGCAGCAACAAA 58.464 39.130 0.00 0.00 0.00 2.83
2625 3623 4.614284 CGAAACATTCTAGCAGCAACAAAG 59.386 41.667 0.00 0.00 0.00 2.77
2626 3624 5.520376 AAACATTCTAGCAGCAACAAAGT 57.480 34.783 0.00 0.00 0.00 2.66
2628 3626 3.885297 ACATTCTAGCAGCAACAAAGTGT 59.115 39.130 0.00 0.00 0.00 3.55
2629 3627 3.969117 TTCTAGCAGCAACAAAGTGTG 57.031 42.857 0.00 0.00 0.00 3.82
2630 3628 3.192541 TCTAGCAGCAACAAAGTGTGA 57.807 42.857 0.00 0.00 0.00 3.58
2631 3629 2.872245 TCTAGCAGCAACAAAGTGTGAC 59.128 45.455 0.00 0.00 0.00 3.67
2632 3630 1.755179 AGCAGCAACAAAGTGTGACT 58.245 45.000 0.00 0.00 0.00 3.41
2633 3631 2.917933 AGCAGCAACAAAGTGTGACTA 58.082 42.857 0.00 0.00 0.00 2.59
2634 3632 2.614057 AGCAGCAACAAAGTGTGACTAC 59.386 45.455 0.00 0.00 0.00 2.73
2636 3634 3.181501 GCAGCAACAAAGTGTGACTACAA 60.182 43.478 0.00 0.00 38.82 2.41
2637 3635 4.342772 CAGCAACAAAGTGTGACTACAAC 58.657 43.478 0.00 0.00 38.82 3.32
2639 3637 3.377172 GCAACAAAGTGTGACTACAACCT 59.623 43.478 0.00 0.00 38.82 3.50
2640 3638 4.142469 GCAACAAAGTGTGACTACAACCTT 60.142 41.667 0.00 0.00 38.82 3.50
2641 3639 5.331902 CAACAAAGTGTGACTACAACCTTG 58.668 41.667 0.00 0.00 38.82 3.61
2642 3640 4.839121 ACAAAGTGTGACTACAACCTTGA 58.161 39.130 0.00 0.00 38.82 3.02
2646 3644 7.093945 ACAAAGTGTGACTACAACCTTGAAAAT 60.094 33.333 0.00 0.00 38.82 1.82
2647 3645 6.619801 AGTGTGACTACAACCTTGAAAATC 57.380 37.500 0.00 0.00 38.82 2.17
2648 3646 5.236478 AGTGTGACTACAACCTTGAAAATCG 59.764 40.000 0.00 0.00 38.82 3.34
2649 3647 5.235616 GTGTGACTACAACCTTGAAAATCGA 59.764 40.000 0.00 0.00 38.82 3.59
2650 3648 5.995282 TGTGACTACAACCTTGAAAATCGAT 59.005 36.000 0.00 0.00 32.88 3.59
2651 3649 6.147164 TGTGACTACAACCTTGAAAATCGATC 59.853 38.462 0.00 0.00 32.88 3.69
2652 3650 5.642063 TGACTACAACCTTGAAAATCGATCC 59.358 40.000 0.00 0.00 0.00 3.36
2653 3651 4.630069 ACTACAACCTTGAAAATCGATCCG 59.370 41.667 0.00 0.00 0.00 4.18
2654 3652 2.161609 ACAACCTTGAAAATCGATCCGC 59.838 45.455 0.00 0.00 0.00 5.54
2655 3653 1.379527 ACCTTGAAAATCGATCCGCC 58.620 50.000 0.00 0.00 0.00 6.13
2656 3654 1.065418 ACCTTGAAAATCGATCCGCCT 60.065 47.619 0.00 0.00 0.00 5.52
2657 3655 1.599542 CCTTGAAAATCGATCCGCCTC 59.400 52.381 0.00 0.00 0.00 4.70
2659 3657 2.691409 TGAAAATCGATCCGCCTCTT 57.309 45.000 0.00 0.00 0.00 2.85
2660 3658 2.550978 TGAAAATCGATCCGCCTCTTC 58.449 47.619 0.00 0.00 0.00 2.87
2661 3659 1.867865 GAAAATCGATCCGCCTCTTCC 59.132 52.381 0.00 0.00 0.00 3.46
2662 3660 0.830648 AAATCGATCCGCCTCTTCCA 59.169 50.000 0.00 0.00 0.00 3.53
2663 3661 0.105039 AATCGATCCGCCTCTTCCAC 59.895 55.000 0.00 0.00 0.00 4.02
2675 4833 2.538437 CTCTTCCACAAGATGAGCTCG 58.462 52.381 9.64 0.00 39.23 5.03
2676 4834 1.205655 TCTTCCACAAGATGAGCTCGG 59.794 52.381 9.64 2.00 33.38 4.63
2677 4835 1.205655 CTTCCACAAGATGAGCTCGGA 59.794 52.381 9.64 4.64 0.00 4.55
2679 4837 1.205655 TCCACAAGATGAGCTCGGAAG 59.794 52.381 9.64 0.30 0.00 3.46
2680 4838 1.205655 CCACAAGATGAGCTCGGAAGA 59.794 52.381 9.64 0.00 39.12 2.87
2693 4851 3.087370 TCGGAAGAGATCCTTGACAGA 57.913 47.619 1.70 0.00 46.98 3.41
2694 4852 3.636679 TCGGAAGAGATCCTTGACAGAT 58.363 45.455 1.70 0.00 46.98 2.90
2695 4853 4.793201 TCGGAAGAGATCCTTGACAGATA 58.207 43.478 1.70 0.00 46.98 1.98
2696 4854 4.580995 TCGGAAGAGATCCTTGACAGATAC 59.419 45.833 1.70 0.00 46.98 2.24
2698 4856 5.596845 GGAAGAGATCCTTGACAGATACAC 58.403 45.833 1.70 0.00 45.56 2.90
2699 4857 5.452636 GGAAGAGATCCTTGACAGATACACC 60.453 48.000 1.70 0.00 45.56 4.16
2700 4858 3.964031 AGAGATCCTTGACAGATACACCC 59.036 47.826 0.00 0.00 0.00 4.61
2702 4860 3.964031 AGATCCTTGACAGATACACCCTC 59.036 47.826 0.00 0.00 0.00 4.30
2703 4861 2.467880 TCCTTGACAGATACACCCTCC 58.532 52.381 0.00 0.00 0.00 4.30
2706 4864 1.933021 TGACAGATACACCCTCCGTT 58.067 50.000 0.00 0.00 0.00 4.44
2707 4865 1.822990 TGACAGATACACCCTCCGTTC 59.177 52.381 0.00 0.00 0.00 3.95
2708 4866 1.136500 GACAGATACACCCTCCGTTCC 59.864 57.143 0.00 0.00 0.00 3.62
2710 4868 1.553248 CAGATACACCCTCCGTTCCAA 59.447 52.381 0.00 0.00 0.00 3.53
2711 4869 2.027561 CAGATACACCCTCCGTTCCAAA 60.028 50.000 0.00 0.00 0.00 3.28
2712 4870 2.640826 AGATACACCCTCCGTTCCAAAA 59.359 45.455 0.00 0.00 0.00 2.44
2713 4871 3.265995 AGATACACCCTCCGTTCCAAAAT 59.734 43.478 0.00 0.00 0.00 1.82
2714 4872 4.472108 AGATACACCCTCCGTTCCAAAATA 59.528 41.667 0.00 0.00 0.00 1.40
2717 4875 3.181437 ACACCCTCCGTTCCAAAATAAGT 60.181 43.478 0.00 0.00 0.00 2.24
2718 4876 3.190535 CACCCTCCGTTCCAAAATAAGTG 59.809 47.826 0.00 0.00 0.00 3.16
2719 4877 3.073356 ACCCTCCGTTCCAAAATAAGTGA 59.927 43.478 0.00 0.00 0.00 3.41
2720 4878 3.439129 CCCTCCGTTCCAAAATAAGTGAC 59.561 47.826 0.00 0.00 0.00 3.67
2721 4879 4.324267 CCTCCGTTCCAAAATAAGTGACT 58.676 43.478 0.00 0.00 0.00 3.41
2723 4881 4.963373 TCCGTTCCAAAATAAGTGACTCA 58.037 39.130 0.00 0.00 0.00 3.41
2724 4882 5.369833 TCCGTTCCAAAATAAGTGACTCAA 58.630 37.500 0.00 0.00 0.00 3.02
2725 4883 5.823570 TCCGTTCCAAAATAAGTGACTCAAA 59.176 36.000 0.00 0.00 0.00 2.69
2726 4884 5.912955 CCGTTCCAAAATAAGTGACTCAAAC 59.087 40.000 0.00 0.00 0.00 2.93
2727 4885 6.238648 CCGTTCCAAAATAAGTGACTCAAACT 60.239 38.462 0.00 0.00 0.00 2.66
2729 4887 7.700656 CGTTCCAAAATAAGTGACTCAAACTTT 59.299 33.333 0.00 0.00 38.73 2.66
2730 4888 8.807581 GTTCCAAAATAAGTGACTCAAACTTTG 58.192 33.333 0.00 0.00 38.73 2.77
2732 4890 9.179909 TCCAAAATAAGTGACTCAAACTTTGTA 57.820 29.630 1.44 0.00 38.73 2.41
2733 4891 9.233232 CCAAAATAAGTGACTCAAACTTTGTAC 57.767 33.333 1.44 0.00 38.73 2.90
2739 4897 8.788325 AAGTGACTCAAACTTTGTACTAACTT 57.212 30.769 1.44 4.65 34.16 2.66
2741 4899 9.880157 AGTGACTCAAACTTTGTACTAACTTTA 57.120 29.630 1.44 0.00 0.00 1.85
2742 4900 9.911980 GTGACTCAAACTTTGTACTAACTTTAC 57.088 33.333 1.44 0.00 0.00 2.01
2758 4916 9.310716 ACTAACTTTACTACAAACTTGAGTCAC 57.689 33.333 0.00 0.00 0.00 3.67
2759 4917 9.530633 CTAACTTTACTACAAACTTGAGTCACT 57.469 33.333 0.00 0.00 0.00 3.41
2760 4918 8.788325 AACTTTACTACAAACTTGAGTCACTT 57.212 30.769 0.00 0.00 0.00 3.16
2761 4919 9.880157 AACTTTACTACAAACTTGAGTCACTTA 57.120 29.630 0.00 0.00 0.00 2.24
2768 4926 6.805713 ACAAACTTGAGTCACTTATTTTGGG 58.194 36.000 9.57 0.00 0.00 4.12
2771 4929 4.755123 ACTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2773 4931 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2774 4932 4.202377 TGAGTCACTTATTTTGGGACGGAA 60.202 41.667 0.00 0.00 33.84 4.30
2776 4934 3.439129 GTCACTTATTTTGGGACGGAAGG 59.561 47.826 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 2.547218 GCAAAGAGGTTGGTCGTGTAGA 60.547 50.000 0.00 0.00 37.73 2.59
102 104 2.104281 AGTTAGACGCAAAGAGGTTGGT 59.896 45.455 0.00 0.00 37.73 3.67
113 115 1.271108 TGCAATGGGAAGTTAGACGCA 60.271 47.619 0.00 0.00 0.00 5.24
225 230 5.984233 TGGTGTCTGCAAATATTACGATC 57.016 39.130 0.00 0.00 0.00 3.69
234 239 6.017400 CTGACTATTTTGGTGTCTGCAAAT 57.983 37.500 0.00 0.00 0.00 2.32
281 288 3.849574 TCATTCCCAGTGAAATGTAGGGA 59.150 43.478 14.22 0.00 46.43 4.20
293 300 9.305555 CAATCCTCATTTAATATCATTCCCAGT 57.694 33.333 0.00 0.00 0.00 4.00
311 318 4.019681 ACTCCCGTGAAAATACAATCCTCA 60.020 41.667 0.00 0.00 0.00 3.86
312 319 4.332819 CACTCCCGTGAAAATACAATCCTC 59.667 45.833 0.00 0.00 43.97 3.71
459 469 2.819608 GCAACTTCACCTTTGCAGGATA 59.180 45.455 0.00 0.00 46.13 2.59
509 519 3.914426 ATAGCTAAACAGGGTCAGGTG 57.086 47.619 0.00 0.00 0.00 4.00
537 547 2.425143 TGATCCATCCTTTGCCTGTC 57.575 50.000 0.00 0.00 0.00 3.51
538 548 4.210331 GTTATGATCCATCCTTTGCCTGT 58.790 43.478 0.00 0.00 0.00 4.00
602 613 3.810310 AGTTCATGGATCGTCTCTTCC 57.190 47.619 0.00 0.00 0.00 3.46
614 625 2.159393 CCAACCGCATGTTAGTTCATGG 60.159 50.000 8.41 0.00 43.54 3.66
618 630 2.097466 CCATCCAACCGCATGTTAGTTC 59.903 50.000 0.00 0.00 34.69 3.01
642 654 0.977627 ACGATCATCTCTGCCCACCA 60.978 55.000 0.00 0.00 0.00 4.17
648 660 3.067461 ACTCCTAACACGATCATCTCTGC 59.933 47.826 0.00 0.00 0.00 4.26
657 669 4.087182 TCTTTCCTCACTCCTAACACGAT 58.913 43.478 0.00 0.00 0.00 3.73
685 697 2.030185 CCCTCTGGTAACCGATCATACG 60.030 54.545 0.00 0.00 0.00 3.06
688 700 1.062428 TCCCCTCTGGTAACCGATCAT 60.062 52.381 0.00 0.00 34.77 2.45
689 701 0.337082 TCCCCTCTGGTAACCGATCA 59.663 55.000 0.00 0.00 34.77 2.92
694 706 2.679930 CGTGATTTCCCCTCTGGTAACC 60.680 54.545 0.00 0.00 34.77 2.85
699 711 1.202698 GGATCGTGATTTCCCCTCTGG 60.203 57.143 0.00 0.00 0.00 3.86
720 732 3.737047 CGTAACCACCGTCATTATCTGCT 60.737 47.826 0.00 0.00 0.00 4.24
721 733 2.538449 CGTAACCACCGTCATTATCTGC 59.462 50.000 0.00 0.00 0.00 4.26
763 778 1.939255 TGGAAACCGTAACCACGTTTC 59.061 47.619 12.52 12.52 46.96 2.78
855 870 2.047560 GGACCGTGGGAGGAAACG 60.048 66.667 0.00 0.00 39.48 3.60
950 966 2.926200 CTCGCTTCAGTCGTTTGATGAT 59.074 45.455 8.28 0.00 0.00 2.45
951 967 2.328473 CTCGCTTCAGTCGTTTGATGA 58.672 47.619 8.28 0.00 0.00 2.92
952 968 1.391485 CCTCGCTTCAGTCGTTTGATG 59.609 52.381 0.00 0.00 0.00 3.07
960 976 2.202676 CGCTCCCTCGCTTCAGTC 60.203 66.667 0.00 0.00 0.00 3.51
1288 1380 1.560866 CCCCTCTTCCAGCTGCTTCT 61.561 60.000 8.66 0.00 0.00 2.85
1320 1412 4.322049 CGACTCCTTCTGGATGTTGTAGTT 60.322 45.833 0.00 0.00 42.29 2.24
1476 1568 1.068127 GATCATGGGCTTTGCATGGTC 59.932 52.381 0.00 0.00 30.62 4.02
1477 1569 1.117150 GATCATGGGCTTTGCATGGT 58.883 50.000 0.00 0.00 0.00 3.55
1478 1570 1.068588 CTGATCATGGGCTTTGCATGG 59.931 52.381 0.00 0.00 0.00 3.66
1479 1571 2.028876 TCTGATCATGGGCTTTGCATG 58.971 47.619 0.00 0.00 0.00 4.06
1480 1572 2.447408 TCTGATCATGGGCTTTGCAT 57.553 45.000 0.00 0.00 0.00 3.96
1481 1573 2.028876 CATCTGATCATGGGCTTTGCA 58.971 47.619 0.00 0.00 0.00 4.08
1482 1574 2.293677 CTCATCTGATCATGGGCTTTGC 59.706 50.000 0.00 0.00 0.00 3.68
1483 1575 3.816994 TCTCATCTGATCATGGGCTTTG 58.183 45.455 0.00 0.00 0.00 2.77
1484 1576 4.351407 AGATCTCATCTGATCATGGGCTTT 59.649 41.667 0.00 0.00 43.76 3.51
1485 1577 3.911260 AGATCTCATCTGATCATGGGCTT 59.089 43.478 0.00 0.00 43.76 4.35
1486 1578 3.522759 AGATCTCATCTGATCATGGGCT 58.477 45.455 0.00 0.00 43.76 5.19
1487 1579 3.985019 AGATCTCATCTGATCATGGGC 57.015 47.619 0.00 0.00 43.76 5.36
1488 1580 6.891361 AGTACTAGATCTCATCTGATCATGGG 59.109 42.308 0.00 0.00 43.76 4.00
1489 1581 7.067372 GGAGTACTAGATCTCATCTGATCATGG 59.933 44.444 0.00 0.00 43.76 3.66
1490 1582 7.067372 GGGAGTACTAGATCTCATCTGATCATG 59.933 44.444 0.00 0.00 43.76 3.07
1491 1583 7.036644 AGGGAGTACTAGATCTCATCTGATCAT 60.037 40.741 0.00 0.00 43.76 2.45
1492 1584 6.274436 AGGGAGTACTAGATCTCATCTGATCA 59.726 42.308 0.00 0.00 43.76 2.92
1493 1585 6.721318 AGGGAGTACTAGATCTCATCTGATC 58.279 44.000 0.00 0.00 40.51 2.92
1494 1586 6.297010 GGAGGGAGTACTAGATCTCATCTGAT 60.297 46.154 0.00 0.00 40.51 2.90
1495 1587 5.013704 GGAGGGAGTACTAGATCTCATCTGA 59.986 48.000 0.00 0.00 40.51 3.27
1496 1588 5.253330 GGAGGGAGTACTAGATCTCATCTG 58.747 50.000 0.00 0.00 40.51 2.90
1497 1589 4.019681 CGGAGGGAGTACTAGATCTCATCT 60.020 50.000 0.00 13.22 43.33 2.90
1498 1590 4.258543 CGGAGGGAGTACTAGATCTCATC 58.741 52.174 0.00 13.42 32.93 2.92
1499 1591 3.653836 ACGGAGGGAGTACTAGATCTCAT 59.346 47.826 0.00 0.00 32.93 2.90
1500 1592 3.047115 ACGGAGGGAGTACTAGATCTCA 58.953 50.000 0.00 0.00 32.93 3.27
1501 1593 3.775261 ACGGAGGGAGTACTAGATCTC 57.225 52.381 0.00 3.61 0.00 2.75
1502 1594 5.643421 TTTACGGAGGGAGTACTAGATCT 57.357 43.478 0.00 0.00 0.00 2.75
1503 1595 6.897706 AATTTACGGAGGGAGTACTAGATC 57.102 41.667 0.00 0.00 0.00 2.75
1504 1596 8.953223 ATTAATTTACGGAGGGAGTACTAGAT 57.047 34.615 0.00 0.00 0.00 1.98
1511 1603 9.993454 GTTCTTATATTAATTTACGGAGGGAGT 57.007 33.333 0.00 0.00 0.00 3.85
1512 1604 9.136952 CGTTCTTATATTAATTTACGGAGGGAG 57.863 37.037 0.00 0.00 0.00 4.30
1513 1605 8.641541 ACGTTCTTATATTAATTTACGGAGGGA 58.358 33.333 0.00 0.00 32.54 4.20
1514 1606 8.822652 ACGTTCTTATATTAATTTACGGAGGG 57.177 34.615 0.00 0.00 32.54 4.30
1531 1623 9.463443 GTAAACTTAGTGACCTAAACGTTCTTA 57.537 33.333 0.00 0.00 32.86 2.10
1532 1624 7.981225 TGTAAACTTAGTGACCTAAACGTTCTT 59.019 33.333 0.00 0.00 32.86 2.52
1533 1625 7.491682 TGTAAACTTAGTGACCTAAACGTTCT 58.508 34.615 0.00 0.00 32.86 3.01
1534 1626 7.649306 TCTGTAAACTTAGTGACCTAAACGTTC 59.351 37.037 0.00 0.00 32.86 3.95
1535 1627 7.491682 TCTGTAAACTTAGTGACCTAAACGTT 58.508 34.615 0.00 0.00 32.86 3.99
1536 1628 7.042797 TCTGTAAACTTAGTGACCTAAACGT 57.957 36.000 0.00 0.00 32.86 3.99
1537 1629 6.585322 CCTCTGTAAACTTAGTGACCTAAACG 59.415 42.308 0.00 0.00 32.86 3.60
1538 1630 6.872547 CCCTCTGTAAACTTAGTGACCTAAAC 59.127 42.308 0.00 0.00 32.86 2.01
1539 1631 6.783977 TCCCTCTGTAAACTTAGTGACCTAAA 59.216 38.462 0.00 0.00 32.86 1.85
1540 1632 6.317312 TCCCTCTGTAAACTTAGTGACCTAA 58.683 40.000 0.00 0.00 0.00 2.69
1541 1633 5.895807 TCCCTCTGTAAACTTAGTGACCTA 58.104 41.667 0.00 0.00 0.00 3.08
1542 1634 4.748701 TCCCTCTGTAAACTTAGTGACCT 58.251 43.478 0.00 0.00 0.00 3.85
1543 1635 4.527427 ACTCCCTCTGTAAACTTAGTGACC 59.473 45.833 0.00 0.00 0.00 4.02
1544 1636 5.725325 ACTCCCTCTGTAAACTTAGTGAC 57.275 43.478 0.00 0.00 0.00 3.67
1545 1637 6.550163 ACTACTCCCTCTGTAAACTTAGTGA 58.450 40.000 0.00 0.00 0.00 3.41
1546 1638 6.837471 ACTACTCCCTCTGTAAACTTAGTG 57.163 41.667 0.00 0.00 0.00 2.74
1547 1639 7.697946 AGTACTACTCCCTCTGTAAACTTAGT 58.302 38.462 0.00 0.00 0.00 2.24
1548 1640 8.048514 AGAGTACTACTCCCTCTGTAAACTTAG 58.951 40.741 11.94 0.00 46.18 2.18
1549 1641 7.926705 AGAGTACTACTCCCTCTGTAAACTTA 58.073 38.462 11.94 0.00 46.18 2.24
1550 1642 6.792424 AGAGTACTACTCCCTCTGTAAACTT 58.208 40.000 11.94 0.00 46.18 2.66
1551 1643 6.391479 AGAGTACTACTCCCTCTGTAAACT 57.609 41.667 11.94 0.00 46.18 2.66
1552 1644 7.552458 GTAGAGTACTACTCCCTCTGTAAAC 57.448 44.000 11.94 0.00 46.18 2.01
1574 1666 9.667107 GCATGGGTATAGCTTCATAATTAAGTA 57.333 33.333 0.00 0.00 0.00 2.24
1575 1667 8.163408 TGCATGGGTATAGCTTCATAATTAAGT 58.837 33.333 0.00 0.00 0.00 2.24
1576 1668 8.565896 TGCATGGGTATAGCTTCATAATTAAG 57.434 34.615 0.00 0.00 0.00 1.85
1577 1669 8.959548 CATGCATGGGTATAGCTTCATAATTAA 58.040 33.333 19.40 0.00 0.00 1.40
1578 1670 7.067372 GCATGCATGGGTATAGCTTCATAATTA 59.933 37.037 27.34 0.00 0.00 1.40
1579 1671 6.127535 GCATGCATGGGTATAGCTTCATAATT 60.128 38.462 27.34 0.00 0.00 1.40
1580 1672 5.359009 GCATGCATGGGTATAGCTTCATAAT 59.641 40.000 27.34 0.00 0.00 1.28
1581 1673 4.701651 GCATGCATGGGTATAGCTTCATAA 59.298 41.667 27.34 0.00 0.00 1.90
1582 1674 4.263418 TGCATGCATGGGTATAGCTTCATA 60.263 41.667 27.34 0.00 0.00 2.15
1583 1675 3.087031 GCATGCATGGGTATAGCTTCAT 58.913 45.455 27.34 0.00 0.00 2.57
1584 1676 2.158638 TGCATGCATGGGTATAGCTTCA 60.159 45.455 27.34 10.18 0.00 3.02
1585 1677 2.507484 TGCATGCATGGGTATAGCTTC 58.493 47.619 27.34 7.66 0.00 3.86
1586 1678 2.662535 TGCATGCATGGGTATAGCTT 57.337 45.000 27.34 0.00 0.00 3.74
1587 1679 2.893215 ATGCATGCATGGGTATAGCT 57.107 45.000 31.74 4.69 35.03 3.32
1623 1719 3.382855 TCAAAAAGTTTCGGTCGATCGA 58.617 40.909 18.48 18.48 37.38 3.59
1627 1723 5.049954 CAGGTTATCAAAAAGTTTCGGTCGA 60.050 40.000 0.00 0.00 0.00 4.20
1628 1724 5.144359 CAGGTTATCAAAAAGTTTCGGTCG 58.856 41.667 0.00 0.00 0.00 4.79
1629 1725 6.068473 ACAGGTTATCAAAAAGTTTCGGTC 57.932 37.500 0.00 0.00 0.00 4.79
1630 1726 6.127563 ACAACAGGTTATCAAAAAGTTTCGGT 60.128 34.615 0.00 0.00 0.00 4.69
1631 1727 6.198216 CACAACAGGTTATCAAAAAGTTTCGG 59.802 38.462 0.00 0.00 0.00 4.30
1632 1728 6.198216 CCACAACAGGTTATCAAAAAGTTTCG 59.802 38.462 0.00 0.00 0.00 3.46
1633 1729 7.010091 CACCACAACAGGTTATCAAAAAGTTTC 59.990 37.037 0.00 0.00 40.77 2.78
1634 1730 6.816140 CACCACAACAGGTTATCAAAAAGTTT 59.184 34.615 0.00 0.00 40.77 2.66
1635 1731 6.071051 ACACCACAACAGGTTATCAAAAAGTT 60.071 34.615 0.00 0.00 40.77 2.66
1636 1732 5.420739 ACACCACAACAGGTTATCAAAAAGT 59.579 36.000 0.00 0.00 40.77 2.66
1637 1733 5.748152 CACACCACAACAGGTTATCAAAAAG 59.252 40.000 0.00 0.00 40.77 2.27
1640 1736 3.634448 CCACACCACAACAGGTTATCAAA 59.366 43.478 0.00 0.00 40.77 2.69
1644 1740 3.219281 GTTCCACACCACAACAGGTTAT 58.781 45.455 0.00 0.00 40.77 1.89
1653 1749 1.453015 GCACCTGTTCCACACCACA 60.453 57.895 0.00 0.00 0.00 4.17
1695 1791 0.465460 TCTTCTTGCGGCAGTTGGTT 60.465 50.000 1.67 0.00 0.00 3.67
1756 1852 4.816385 TCTTCAGTTCGAAAGCTTGTTGAT 59.184 37.500 0.00 0.00 31.71 2.57
1770 1866 4.291783 CCTACCGATTCGATCTTCAGTTC 58.708 47.826 7.83 0.00 0.00 3.01
1789 1885 1.576272 CCTTCCCTTCTCTCTCCCCTA 59.424 57.143 0.00 0.00 0.00 3.53
1791 1887 0.340208 TCCTTCCCTTCTCTCTCCCC 59.660 60.000 0.00 0.00 0.00 4.81
1816 1919 8.879342 AAACCGAATGAAACAATTTATTCACA 57.121 26.923 5.11 0.00 39.99 3.58
1832 1935 7.271223 CACTAAAGCAACTTGATAAACCGAATG 59.729 37.037 0.00 0.00 0.00 2.67
1833 1936 7.174253 TCACTAAAGCAACTTGATAAACCGAAT 59.826 33.333 0.00 0.00 0.00 3.34
1836 1939 6.236017 TCACTAAAGCAACTTGATAAACCG 57.764 37.500 0.00 0.00 0.00 4.44
1872 1975 4.746466 AGCTAGCTAGAACATATCACCCT 58.254 43.478 25.15 4.21 0.00 4.34
1875 1978 7.389330 TCAGACTAGCTAGCTAGAACATATCAC 59.611 40.741 43.93 25.50 46.56 3.06
1878 1981 7.942341 ACTTCAGACTAGCTAGCTAGAACATAT 59.058 37.037 43.93 27.86 46.56 1.78
1898 2076 3.314553 CTTGCATGGCTTGAAACTTCAG 58.685 45.455 4.32 0.00 38.61 3.02
1906 2084 1.075374 AGTAACCCTTGCATGGCTTGA 59.925 47.619 13.15 0.00 0.00 3.02
1919 2097 4.585879 TGCATCCAACTCTTAAGTAACCC 58.414 43.478 1.63 0.00 33.48 4.11
1928 2106 5.133221 GGGTAATACATGCATCCAACTCTT 58.867 41.667 0.00 0.00 0.00 2.85
1934 2112 3.941704 TGTGGGTAATACATGCATCCA 57.058 42.857 0.00 0.00 0.00 3.41
1936 2114 7.391554 ACAGAATATGTGGGTAATACATGCATC 59.608 37.037 0.00 0.00 41.91 3.91
1989 2177 4.647611 ACACATACACGATTTCCTCCAAA 58.352 39.130 0.00 0.00 0.00 3.28
1991 2179 3.973206 ACACATACACGATTTCCTCCA 57.027 42.857 0.00 0.00 0.00 3.86
1992 2180 4.369182 CCTACACATACACGATTTCCTCC 58.631 47.826 0.00 0.00 0.00 4.30
1994 2182 3.431766 GCCCTACACATACACGATTTCCT 60.432 47.826 0.00 0.00 0.00 3.36
2065 2301 9.528018 GCCTCAAGTATAGCATATCTAAATCTC 57.472 37.037 0.00 0.00 0.00 2.75
2129 2365 1.698874 ATTCCCCAGTCCCCTGAAAT 58.301 50.000 0.00 0.00 41.50 2.17
2130 2366 2.205342 CTATTCCCCAGTCCCCTGAAA 58.795 52.381 0.00 0.00 41.50 2.69
2134 2370 2.918774 ATTCTATTCCCCAGTCCCCT 57.081 50.000 0.00 0.00 0.00 4.79
2139 2377 5.365605 TCGTGATGTAATTCTATTCCCCAGT 59.634 40.000 0.00 0.00 0.00 4.00
2140 2378 5.853936 TCGTGATGTAATTCTATTCCCCAG 58.146 41.667 0.00 0.00 0.00 4.45
2141 2379 5.880164 TCGTGATGTAATTCTATTCCCCA 57.120 39.130 0.00 0.00 0.00 4.96
2158 2396 1.623311 TGATCTGGAGCCTTTTCGTGA 59.377 47.619 0.00 0.00 0.00 4.35
2164 2402 0.177604 CTCGCTGATCTGGAGCCTTT 59.822 55.000 1.46 0.00 32.41 3.11
2172 2410 1.638133 CACCTTGTCTCGCTGATCTG 58.362 55.000 0.00 0.00 0.00 2.90
2205 2443 4.503296 GGTTTCGATACTAGGATGCACCAT 60.503 45.833 5.97 0.00 42.04 3.55
2207 2445 3.069729 AGGTTTCGATACTAGGATGCACC 59.930 47.826 5.97 0.00 39.35 5.01
2228 2466 3.221771 TGTGGATGTGGAACCTTTGAAG 58.778 45.455 0.00 0.00 34.36 3.02
2237 2475 1.548081 CCAGCATTGTGGATGTGGAA 58.452 50.000 0.00 0.00 40.44 3.53
2245 2483 3.384146 TGGTTAATATGCCAGCATTGTGG 59.616 43.478 10.91 0.00 41.01 4.17
2246 2484 4.613944 CTGGTTAATATGCCAGCATTGTG 58.386 43.478 10.91 0.00 44.65 3.33
2247 2485 4.924305 CTGGTTAATATGCCAGCATTGT 57.076 40.909 10.91 1.91 44.65 2.71
2271 2509 6.876789 TCACGTGGTTAATATGTCATTCACTT 59.123 34.615 17.00 0.00 0.00 3.16
2272 2510 6.312918 GTCACGTGGTTAATATGTCATTCACT 59.687 38.462 17.00 0.00 0.00 3.41
2301 2539 4.927978 TGTTTGGATTGTTTACCAGGTG 57.072 40.909 0.76 0.00 37.48 4.00
2302 2540 6.493189 AATTGTTTGGATTGTTTACCAGGT 57.507 33.333 0.00 0.00 37.48 4.00
2303 2541 7.437748 TGTAATTGTTTGGATTGTTTACCAGG 58.562 34.615 0.00 0.00 37.48 4.45
2304 2542 8.879342 TTGTAATTGTTTGGATTGTTTACCAG 57.121 30.769 0.00 0.00 37.48 4.00
2342 2586 4.750598 CCAATTGTTGCAACATGTCATTCA 59.249 37.500 31.48 15.35 38.95 2.57
2371 2615 1.894466 TGGACTTGGCACATCCATTTG 59.106 47.619 13.61 0.00 41.97 2.32
2392 2636 6.000246 TGGATTGATATTTGTGCTGAGGTA 58.000 37.500 0.00 0.00 0.00 3.08
2471 2716 6.058183 TCTTCTTTTCCTTTCAGAAGTCCTG 58.942 40.000 7.78 0.00 42.82 3.86
2472 2717 6.253946 TCTTCTTTTCCTTTCAGAAGTCCT 57.746 37.500 7.78 0.00 42.82 3.85
2477 2722 5.123227 TCGCTTCTTCTTTTCCTTTCAGAA 58.877 37.500 0.00 0.00 0.00 3.02
2478 2723 4.703897 TCGCTTCTTCTTTTCCTTTCAGA 58.296 39.130 0.00 0.00 0.00 3.27
2481 2726 5.208503 CAACTCGCTTCTTCTTTTCCTTTC 58.791 41.667 0.00 0.00 0.00 2.62
2482 2727 4.036852 CCAACTCGCTTCTTCTTTTCCTTT 59.963 41.667 0.00 0.00 0.00 3.11
2517 2763 2.972505 CGTGCGCAGTGGGTTTCT 60.973 61.111 12.22 0.00 0.00 2.52
2528 2774 1.906994 TATGTGGAACTTGCGTGCGC 61.907 55.000 9.85 9.85 38.04 6.09
2529 2775 0.515127 TTATGTGGAACTTGCGTGCG 59.485 50.000 0.00 0.00 38.04 5.34
2530 2776 1.535462 ACTTATGTGGAACTTGCGTGC 59.465 47.619 0.00 0.00 38.04 5.34
2531 2777 3.181520 GCTACTTATGTGGAACTTGCGTG 60.182 47.826 0.00 0.00 38.04 5.34
2535 2781 3.000041 TGCGCTACTTATGTGGAACTTG 59.000 45.455 9.73 0.00 38.04 3.16
2536 2782 3.328382 TGCGCTACTTATGTGGAACTT 57.672 42.857 9.73 0.00 38.04 2.66
2537 2783 3.262420 CTTGCGCTACTTATGTGGAACT 58.738 45.455 9.73 0.00 38.04 3.01
2538 2784 2.223044 GCTTGCGCTACTTATGTGGAAC 60.223 50.000 9.73 0.00 37.35 3.62
2539 2785 2.006888 GCTTGCGCTACTTATGTGGAA 58.993 47.619 9.73 0.00 0.00 3.53
2541 2787 1.368641 TGCTTGCGCTACTTATGTGG 58.631 50.000 9.73 0.00 36.97 4.17
2542 2788 2.159430 TGTTGCTTGCGCTACTTATGTG 59.841 45.455 9.73 0.00 41.50 3.21
2544 2790 3.469899 TTGTTGCTTGCGCTACTTATG 57.530 42.857 9.73 0.00 41.50 1.90
2545 2791 4.226761 GTTTTGTTGCTTGCGCTACTTAT 58.773 39.130 9.73 0.00 41.50 1.73
2546 2792 3.065510 TGTTTTGTTGCTTGCGCTACTTA 59.934 39.130 9.73 0.00 41.50 2.24
2547 2793 2.159310 TGTTTTGTTGCTTGCGCTACTT 60.159 40.909 9.73 0.00 41.50 2.24
2548 2794 1.403679 TGTTTTGTTGCTTGCGCTACT 59.596 42.857 9.73 0.00 41.50 2.57
2549 2795 1.833860 TGTTTTGTTGCTTGCGCTAC 58.166 45.000 9.73 0.00 41.35 3.58
2550 2796 2.791383 ATGTTTTGTTGCTTGCGCTA 57.209 40.000 9.73 0.00 36.97 4.26
2551 2797 2.607771 CCTATGTTTTGTTGCTTGCGCT 60.608 45.455 9.73 0.00 36.97 5.92
2553 3551 1.720852 GCCTATGTTTTGTTGCTTGCG 59.279 47.619 0.00 0.00 0.00 4.85
2556 3554 2.288152 CGTGGCCTATGTTTTGTTGCTT 60.288 45.455 3.32 0.00 0.00 3.91
2560 3558 1.323412 TGCGTGGCCTATGTTTTGTT 58.677 45.000 3.32 0.00 0.00 2.83
2565 3563 3.513225 GCATGCGTGGCCTATGTT 58.487 55.556 8.27 0.00 0.00 2.71
2576 3574 3.829044 CATGTGGGTGGGCATGCG 61.829 66.667 12.44 0.00 36.49 4.73
2578 3576 0.396001 TGATCATGTGGGTGGGCATG 60.396 55.000 0.00 0.00 42.62 4.06
2580 3578 1.303948 CTGATCATGTGGGTGGGCA 59.696 57.895 0.00 0.00 0.00 5.36
2581 3579 2.123428 GCTGATCATGTGGGTGGGC 61.123 63.158 0.00 0.00 0.00 5.36
2582 3580 1.033746 GTGCTGATCATGTGGGTGGG 61.034 60.000 0.00 0.00 0.00 4.61
2585 3583 1.078214 CGGTGCTGATCATGTGGGT 60.078 57.895 0.00 0.00 0.00 4.51
2588 3586 1.805943 TGTTTCGGTGCTGATCATGTG 59.194 47.619 0.00 0.00 0.00 3.21
2592 3590 3.057969 AGAATGTTTCGGTGCTGATCA 57.942 42.857 0.00 0.00 34.02 2.92
2593 3591 3.001736 GCTAGAATGTTTCGGTGCTGATC 59.998 47.826 0.00 0.00 34.02 2.92
2594 3592 2.939103 GCTAGAATGTTTCGGTGCTGAT 59.061 45.455 0.00 0.00 34.02 2.90
2595 3593 2.289382 TGCTAGAATGTTTCGGTGCTGA 60.289 45.455 0.00 0.00 34.02 4.26
2597 3595 2.350522 CTGCTAGAATGTTTCGGTGCT 58.649 47.619 0.00 0.00 34.02 4.40
2598 3596 1.202076 GCTGCTAGAATGTTTCGGTGC 60.202 52.381 0.00 0.00 34.02 5.01
2600 3598 2.472695 TGCTGCTAGAATGTTTCGGT 57.527 45.000 0.00 0.00 34.02 4.69
2601 3599 2.483877 TGTTGCTGCTAGAATGTTTCGG 59.516 45.455 0.00 0.00 34.02 4.30
2604 3602 5.163519 ACACTTTGTTGCTGCTAGAATGTTT 60.164 36.000 9.03 2.53 0.00 2.83
2605 3603 4.339247 ACACTTTGTTGCTGCTAGAATGTT 59.661 37.500 9.03 1.59 0.00 2.71
2609 3607 3.312421 GTCACACTTTGTTGCTGCTAGAA 59.688 43.478 0.00 0.00 0.00 2.10
2610 3608 2.872245 GTCACACTTTGTTGCTGCTAGA 59.128 45.455 0.00 0.00 0.00 2.43
2612 3610 2.917933 AGTCACACTTTGTTGCTGCTA 58.082 42.857 0.00 0.00 0.00 3.49
2613 3611 1.755179 AGTCACACTTTGTTGCTGCT 58.245 45.000 0.00 0.00 0.00 4.24
2614 3612 2.354510 TGTAGTCACACTTTGTTGCTGC 59.645 45.455 0.00 0.00 0.00 5.25
2615 3613 4.342772 GTTGTAGTCACACTTTGTTGCTG 58.657 43.478 0.00 0.00 33.30 4.41
2616 3614 3.377172 GGTTGTAGTCACACTTTGTTGCT 59.623 43.478 0.00 0.00 33.30 3.91
2617 3615 3.377172 AGGTTGTAGTCACACTTTGTTGC 59.623 43.478 0.00 0.00 33.30 4.17
2618 3616 5.123186 TCAAGGTTGTAGTCACACTTTGTTG 59.877 40.000 0.00 0.00 33.30 3.33
2619 3617 5.250200 TCAAGGTTGTAGTCACACTTTGTT 58.750 37.500 0.00 0.00 33.30 2.83
2620 3618 4.839121 TCAAGGTTGTAGTCACACTTTGT 58.161 39.130 0.00 0.00 33.30 2.83
2623 3621 6.238374 CGATTTTCAAGGTTGTAGTCACACTT 60.238 38.462 0.00 0.00 33.30 3.16
2624 3622 5.236478 CGATTTTCAAGGTTGTAGTCACACT 59.764 40.000 0.00 0.00 33.30 3.55
2625 3623 5.235616 TCGATTTTCAAGGTTGTAGTCACAC 59.764 40.000 0.00 0.00 33.30 3.82
2626 3624 5.361427 TCGATTTTCAAGGTTGTAGTCACA 58.639 37.500 0.00 0.00 0.00 3.58
2628 3626 5.642063 GGATCGATTTTCAAGGTTGTAGTCA 59.358 40.000 0.00 0.00 0.00 3.41
2629 3627 5.220416 CGGATCGATTTTCAAGGTTGTAGTC 60.220 44.000 0.00 0.00 0.00 2.59
2630 3628 4.630069 CGGATCGATTTTCAAGGTTGTAGT 59.370 41.667 0.00 0.00 0.00 2.73
2631 3629 4.494199 GCGGATCGATTTTCAAGGTTGTAG 60.494 45.833 0.00 0.00 0.00 2.74
2632 3630 3.372822 GCGGATCGATTTTCAAGGTTGTA 59.627 43.478 0.00 0.00 0.00 2.41
2633 3631 2.161609 GCGGATCGATTTTCAAGGTTGT 59.838 45.455 0.00 0.00 0.00 3.32
2634 3632 2.477863 GGCGGATCGATTTTCAAGGTTG 60.478 50.000 0.00 0.00 0.00 3.77
2636 3634 1.065418 AGGCGGATCGATTTTCAAGGT 60.065 47.619 0.00 0.00 0.00 3.50
2637 3635 1.599542 GAGGCGGATCGATTTTCAAGG 59.400 52.381 0.00 0.00 0.00 3.61
2639 3637 2.691409 AGAGGCGGATCGATTTTCAA 57.309 45.000 0.00 0.00 0.00 2.69
2640 3638 2.550978 GAAGAGGCGGATCGATTTTCA 58.449 47.619 0.00 0.00 0.00 2.69
2641 3639 1.867865 GGAAGAGGCGGATCGATTTTC 59.132 52.381 0.00 0.00 0.00 2.29
2642 3640 1.209504 TGGAAGAGGCGGATCGATTTT 59.790 47.619 0.00 0.00 0.00 1.82
2646 3644 1.254975 TTGTGGAAGAGGCGGATCGA 61.255 55.000 0.00 0.00 0.00 3.59
2647 3645 0.807667 CTTGTGGAAGAGGCGGATCG 60.808 60.000 0.00 0.00 0.00 3.69
2648 3646 0.537188 TCTTGTGGAAGAGGCGGATC 59.463 55.000 0.00 0.00 32.98 3.36
2649 3647 1.134280 CATCTTGTGGAAGAGGCGGAT 60.134 52.381 0.00 0.00 41.62 4.18
2650 3648 0.250234 CATCTTGTGGAAGAGGCGGA 59.750 55.000 0.00 0.00 41.62 5.54
2651 3649 0.250234 TCATCTTGTGGAAGAGGCGG 59.750 55.000 0.00 0.00 41.62 6.13
2652 3650 1.649664 CTCATCTTGTGGAAGAGGCG 58.350 55.000 0.00 0.00 41.62 5.52
2653 3651 1.065564 AGCTCATCTTGTGGAAGAGGC 60.066 52.381 0.00 0.00 41.62 4.70
2654 3652 2.738000 CGAGCTCATCTTGTGGAAGAGG 60.738 54.545 15.40 0.00 41.62 3.69
2655 3653 2.538437 CGAGCTCATCTTGTGGAAGAG 58.462 52.381 15.40 0.00 41.62 2.85
2656 3654 1.205655 CCGAGCTCATCTTGTGGAAGA 59.794 52.381 15.40 0.00 42.53 2.87
2657 3655 1.205655 TCCGAGCTCATCTTGTGGAAG 59.794 52.381 15.40 0.00 0.00 3.46
2659 3657 1.205655 CTTCCGAGCTCATCTTGTGGA 59.794 52.381 15.40 7.36 0.00 4.02
2660 3658 1.205655 TCTTCCGAGCTCATCTTGTGG 59.794 52.381 15.40 4.82 0.00 4.17
2661 3659 2.165234 TCTCTTCCGAGCTCATCTTGTG 59.835 50.000 15.40 0.00 37.19 3.33
2662 3660 2.451490 TCTCTTCCGAGCTCATCTTGT 58.549 47.619 15.40 0.00 37.19 3.16
2663 3661 3.552684 GGATCTCTTCCGAGCTCATCTTG 60.553 52.174 15.40 0.00 34.79 3.02
2675 4833 5.452636 GGTGTATCTGTCAAGGATCTCTTCC 60.453 48.000 0.00 0.00 45.85 3.46
2676 4834 5.452636 GGGTGTATCTGTCAAGGATCTCTTC 60.453 48.000 0.00 0.00 32.41 2.87
2677 4835 4.407296 GGGTGTATCTGTCAAGGATCTCTT 59.593 45.833 0.00 0.00 35.79 2.85
2679 4837 3.964031 AGGGTGTATCTGTCAAGGATCTC 59.036 47.826 0.00 0.00 0.00 2.75
2680 4838 3.964031 GAGGGTGTATCTGTCAAGGATCT 59.036 47.826 0.00 0.00 0.00 2.75
2681 4839 3.070302 GGAGGGTGTATCTGTCAAGGATC 59.930 52.174 0.00 0.00 0.00 3.36
2682 4840 3.041946 GGAGGGTGTATCTGTCAAGGAT 58.958 50.000 0.00 0.00 0.00 3.24
2686 4844 1.933021 ACGGAGGGTGTATCTGTCAA 58.067 50.000 0.00 0.00 30.27 3.18
2687 4845 1.822990 GAACGGAGGGTGTATCTGTCA 59.177 52.381 0.00 0.00 35.20 3.58
2688 4846 1.136500 GGAACGGAGGGTGTATCTGTC 59.864 57.143 0.00 0.00 35.20 3.51
2689 4847 1.192428 GGAACGGAGGGTGTATCTGT 58.808 55.000 0.00 0.00 37.90 3.41
2690 4848 1.191535 TGGAACGGAGGGTGTATCTG 58.808 55.000 0.00 0.00 0.00 2.90
2691 4849 1.946984 TTGGAACGGAGGGTGTATCT 58.053 50.000 0.00 0.00 0.00 1.98
2692 4850 2.773993 TTTGGAACGGAGGGTGTATC 57.226 50.000 0.00 0.00 0.00 2.24
2693 4851 3.732048 ATTTTGGAACGGAGGGTGTAT 57.268 42.857 0.00 0.00 0.00 2.29
2694 4852 4.041938 ACTTATTTTGGAACGGAGGGTGTA 59.958 41.667 0.00 0.00 0.00 2.90
2695 4853 3.181437 ACTTATTTTGGAACGGAGGGTGT 60.181 43.478 0.00 0.00 0.00 4.16
2696 4854 3.190535 CACTTATTTTGGAACGGAGGGTG 59.809 47.826 0.00 0.00 0.00 4.61
2698 4856 3.439129 GTCACTTATTTTGGAACGGAGGG 59.561 47.826 0.00 0.00 0.00 4.30
2699 4857 4.324267 AGTCACTTATTTTGGAACGGAGG 58.676 43.478 0.00 0.00 0.00 4.30
2700 4858 4.994852 TGAGTCACTTATTTTGGAACGGAG 59.005 41.667 0.00 0.00 0.00 4.63
2702 4860 5.682943 TTGAGTCACTTATTTTGGAACGG 57.317 39.130 0.00 0.00 0.00 4.44
2703 4861 6.725246 AGTTTGAGTCACTTATTTTGGAACG 58.275 36.000 0.00 0.00 0.00 3.95
2706 4864 8.062065 ACAAAGTTTGAGTCACTTATTTTGGA 57.938 30.769 22.23 0.00 33.12 3.53
2707 4865 9.233232 GTACAAAGTTTGAGTCACTTATTTTGG 57.767 33.333 22.23 0.00 33.12 3.28
2713 4871 9.880157 AAGTTAGTACAAAGTTTGAGTCACTTA 57.120 29.630 22.23 9.84 33.12 2.24
2714 4872 8.788325 AAGTTAGTACAAAGTTTGAGTCACTT 57.212 30.769 22.23 17.05 35.94 3.16
2717 4875 9.880157 AGTAAAGTTAGTACAAAGTTTGAGTCA 57.120 29.630 22.23 2.05 34.60 3.41
2732 4890 9.310716 GTGACTCAAGTTTGTAGTAAAGTTAGT 57.689 33.333 0.00 0.00 0.00 2.24
2733 4891 9.530633 AGTGACTCAAGTTTGTAGTAAAGTTAG 57.469 33.333 0.00 0.00 0.00 2.34
2734 4892 9.880157 AAGTGACTCAAGTTTGTAGTAAAGTTA 57.120 29.630 0.00 0.00 0.00 2.24
2735 4893 8.788325 AAGTGACTCAAGTTTGTAGTAAAGTT 57.212 30.769 0.00 0.00 0.00 2.66
2741 4899 8.621286 CCAAAATAAGTGACTCAAGTTTGTAGT 58.379 33.333 15.07 0.00 0.00 2.73
2742 4900 8.076178 CCCAAAATAAGTGACTCAAGTTTGTAG 58.924 37.037 15.07 6.78 0.00 2.74
2744 4902 6.605594 TCCCAAAATAAGTGACTCAAGTTTGT 59.394 34.615 15.07 0.00 0.00 2.83
2745 4903 6.918022 GTCCCAAAATAAGTGACTCAAGTTTG 59.082 38.462 11.50 11.50 0.00 2.93
2746 4904 6.238648 CGTCCCAAAATAAGTGACTCAAGTTT 60.239 38.462 0.00 0.00 0.00 2.66
2747 4905 5.238650 CGTCCCAAAATAAGTGACTCAAGTT 59.761 40.000 0.00 0.00 0.00 2.66
2748 4906 4.755123 CGTCCCAAAATAAGTGACTCAAGT 59.245 41.667 0.00 0.00 0.00 3.16
2750 4908 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2751 4909 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2752 4910 3.934068 TCCGTCCCAAAATAAGTGACTC 58.066 45.455 0.00 0.00 0.00 3.36
2754 4912 3.439129 CCTTCCGTCCCAAAATAAGTGAC 59.561 47.826 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.