Multiple sequence alignment - TraesCS1D01G228300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G228300 chr1D 100.000 2972 0 0 1 2972 316244584 316241613 0.000000e+00 5489.0
1 TraesCS1D01G228300 chr4D 98.347 2359 36 2 616 2972 491381489 491383846 0.000000e+00 4137.0
2 TraesCS1D01G228300 chr3D 98.346 2358 36 2 617 2972 334133 336489 0.000000e+00 4135.0
3 TraesCS1D01G228300 chr3D 97.453 2356 49 3 617 2972 468955024 468957368 0.000000e+00 4008.0
4 TraesCS1D01G228300 chr2D 98.010 2362 41 2 616 2972 130079134 130076774 0.000000e+00 4096.0
5 TraesCS1D01G228300 chr2D 98.049 2358 42 3 617 2972 617340745 617343100 0.000000e+00 4096.0
6 TraesCS1D01G228300 chr2D 82.143 84 13 1 2727 2808 573424733 573424816 1.480000e-08 71.3
7 TraesCS1D01G228300 chr6D 97.671 2362 46 6 613 2972 420171214 420173568 0.000000e+00 4048.0
8 TraesCS1D01G228300 chr5D 97.583 2358 49 3 617 2972 78602934 78600583 0.000000e+00 4032.0
9 TraesCS1D01G228300 chr5D 98.486 2048 29 2 616 2662 555413535 555415581 0.000000e+00 3609.0
10 TraesCS1D01G228300 chr4A 95.943 2366 69 13 617 2972 731637348 731635000 0.000000e+00 3812.0
11 TraesCS1D01G228300 chr5A 94.105 2375 91 17 617 2972 666200505 666198161 0.000000e+00 3565.0
12 TraesCS1D01G228300 chr7A 96.058 1573 41 8 1403 2972 70256082 70254528 0.000000e+00 2542.0
13 TraesCS1D01G228300 chr7A 78.155 206 37 6 2747 2944 658704101 658703896 1.120000e-24 124.0
14 TraesCS1D01G228300 chr2A 94.118 527 15 4 2446 2972 695189713 695190223 0.000000e+00 787.0
15 TraesCS1D01G228300 chr1A 96.091 307 9 3 311 616 397084826 397084522 5.720000e-137 497.0
16 TraesCS1D01G228300 chr1A 93.452 336 16 4 4 333 397085170 397084835 7.400000e-136 494.0
17 TraesCS1D01G228300 chr1B 96.928 293 8 1 324 616 428616563 428616272 9.570000e-135 490.0
18 TraesCS1D01G228300 chr6B 92.181 243 19 0 2727 2969 142982789 142982547 7.890000e-91 344.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G228300 chr1D 316241613 316244584 2971 True 5489.0 5489 100.0000 1 2972 1 chr1D.!!$R1 2971
1 TraesCS1D01G228300 chr4D 491381489 491383846 2357 False 4137.0 4137 98.3470 616 2972 1 chr4D.!!$F1 2356
2 TraesCS1D01G228300 chr3D 334133 336489 2356 False 4135.0 4135 98.3460 617 2972 1 chr3D.!!$F1 2355
3 TraesCS1D01G228300 chr3D 468955024 468957368 2344 False 4008.0 4008 97.4530 617 2972 1 chr3D.!!$F2 2355
4 TraesCS1D01G228300 chr2D 130076774 130079134 2360 True 4096.0 4096 98.0100 616 2972 1 chr2D.!!$R1 2356
5 TraesCS1D01G228300 chr2D 617340745 617343100 2355 False 4096.0 4096 98.0490 617 2972 1 chr2D.!!$F2 2355
6 TraesCS1D01G228300 chr6D 420171214 420173568 2354 False 4048.0 4048 97.6710 613 2972 1 chr6D.!!$F1 2359
7 TraesCS1D01G228300 chr5D 78600583 78602934 2351 True 4032.0 4032 97.5830 617 2972 1 chr5D.!!$R1 2355
8 TraesCS1D01G228300 chr5D 555413535 555415581 2046 False 3609.0 3609 98.4860 616 2662 1 chr5D.!!$F1 2046
9 TraesCS1D01G228300 chr4A 731635000 731637348 2348 True 3812.0 3812 95.9430 617 2972 1 chr4A.!!$R1 2355
10 TraesCS1D01G228300 chr5A 666198161 666200505 2344 True 3565.0 3565 94.1050 617 2972 1 chr5A.!!$R1 2355
11 TraesCS1D01G228300 chr7A 70254528 70256082 1554 True 2542.0 2542 96.0580 1403 2972 1 chr7A.!!$R1 1569
12 TraesCS1D01G228300 chr2A 695189713 695190223 510 False 787.0 787 94.1180 2446 2972 1 chr2A.!!$F1 526
13 TraesCS1D01G228300 chr1A 397084522 397085170 648 True 495.5 497 94.7715 4 616 2 chr1A.!!$R1 612

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
483 484 0.037734 TCTCACACTCCTCTGCGGTA 59.962 55.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2191 2224 4.14139 ACTTCACTCCTCCATCACAACTTT 60.141 41.667 0.0 0.0 0.0 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.406691 CAGAGCGAAAGAAACGAGTCAG 59.593 50.000 0.00 0.00 0.00 3.51
50 51 2.293677 AGAGCGAAAGAAACGAGTCAGA 59.706 45.455 0.00 0.00 0.00 3.27
51 52 3.057174 AGAGCGAAAGAAACGAGTCAGAT 60.057 43.478 0.00 0.00 0.00 2.90
52 53 4.156190 AGAGCGAAAGAAACGAGTCAGATA 59.844 41.667 0.00 0.00 0.00 1.98
53 54 4.806330 AGCGAAAGAAACGAGTCAGATAA 58.194 39.130 0.00 0.00 0.00 1.75
54 55 4.621886 AGCGAAAGAAACGAGTCAGATAAC 59.378 41.667 0.00 0.00 0.00 1.89
55 56 4.488889 GCGAAAGAAACGAGTCAGATAACG 60.489 45.833 0.00 0.00 0.00 3.18
56 57 4.849926 CGAAAGAAACGAGTCAGATAACGA 59.150 41.667 0.00 0.00 0.00 3.85
57 58 5.002654 CGAAAGAAACGAGTCAGATAACGAG 59.997 44.000 0.00 0.00 0.00 4.18
58 59 5.373981 AAGAAACGAGTCAGATAACGAGT 57.626 39.130 0.00 0.00 0.00 4.18
59 60 6.492007 AAGAAACGAGTCAGATAACGAGTA 57.508 37.500 0.00 0.00 0.00 2.59
60 61 5.867166 AGAAACGAGTCAGATAACGAGTAC 58.133 41.667 0.00 0.00 0.00 2.73
61 62 5.410746 AGAAACGAGTCAGATAACGAGTACA 59.589 40.000 0.00 0.00 0.00 2.90
62 63 5.814764 AACGAGTCAGATAACGAGTACAT 57.185 39.130 0.00 0.00 0.00 2.29
63 64 5.814764 ACGAGTCAGATAACGAGTACATT 57.185 39.130 0.00 0.00 0.00 2.71
64 65 6.192234 ACGAGTCAGATAACGAGTACATTT 57.808 37.500 0.00 0.00 0.00 2.32
65 66 6.028368 ACGAGTCAGATAACGAGTACATTTG 58.972 40.000 0.00 0.00 0.00 2.32
66 67 6.028368 CGAGTCAGATAACGAGTACATTTGT 58.972 40.000 0.00 0.00 0.00 2.83
67 68 6.021390 CGAGTCAGATAACGAGTACATTTGTG 60.021 42.308 0.00 0.00 0.00 3.33
68 69 5.577164 AGTCAGATAACGAGTACATTTGTGC 59.423 40.000 0.00 0.00 0.00 4.57
69 70 5.577164 GTCAGATAACGAGTACATTTGTGCT 59.423 40.000 0.66 0.66 43.64 4.40
76 77 3.407424 AGTACATTTGTGCTCTGCTCA 57.593 42.857 0.00 0.00 36.19 4.26
77 78 3.947868 AGTACATTTGTGCTCTGCTCAT 58.052 40.909 0.00 0.00 36.19 2.90
78 79 5.089970 AGTACATTTGTGCTCTGCTCATA 57.910 39.130 0.00 0.00 36.19 2.15
79 80 5.491070 AGTACATTTGTGCTCTGCTCATAA 58.509 37.500 0.00 0.00 36.19 1.90
80 81 4.959596 ACATTTGTGCTCTGCTCATAAG 57.040 40.909 0.00 0.00 32.16 1.73
81 82 4.582869 ACATTTGTGCTCTGCTCATAAGA 58.417 39.130 0.00 0.00 32.16 2.10
82 83 4.634883 ACATTTGTGCTCTGCTCATAAGAG 59.365 41.667 0.00 0.00 43.42 2.85
97 98 7.301068 CTCATAAGAGCACTTTCAAGGTTAG 57.699 40.000 0.55 0.00 37.53 2.34
98 99 7.004555 TCATAAGAGCACTTTCAAGGTTAGA 57.995 36.000 0.55 0.00 37.53 2.10
99 100 7.624549 TCATAAGAGCACTTTCAAGGTTAGAT 58.375 34.615 0.55 0.00 37.53 1.98
100 101 7.550551 TCATAAGAGCACTTTCAAGGTTAGATG 59.449 37.037 0.55 0.00 37.53 2.90
101 102 4.583871 AGAGCACTTTCAAGGTTAGATGG 58.416 43.478 0.00 0.00 0.00 3.51
102 103 4.042187 AGAGCACTTTCAAGGTTAGATGGT 59.958 41.667 0.00 0.00 0.00 3.55
103 104 4.074970 AGCACTTTCAAGGTTAGATGGTG 58.925 43.478 0.00 0.00 0.00 4.17
104 105 4.072131 GCACTTTCAAGGTTAGATGGTGA 58.928 43.478 0.00 0.00 0.00 4.02
105 106 4.518970 GCACTTTCAAGGTTAGATGGTGAA 59.481 41.667 0.00 0.00 0.00 3.18
106 107 5.183904 GCACTTTCAAGGTTAGATGGTGAAT 59.816 40.000 0.00 0.00 0.00 2.57
107 108 6.374333 GCACTTTCAAGGTTAGATGGTGAATA 59.626 38.462 0.00 0.00 0.00 1.75
108 109 7.067494 GCACTTTCAAGGTTAGATGGTGAATAT 59.933 37.037 0.00 0.00 0.00 1.28
109 110 8.400947 CACTTTCAAGGTTAGATGGTGAATATG 58.599 37.037 0.00 0.00 0.00 1.78
110 111 7.557719 ACTTTCAAGGTTAGATGGTGAATATGG 59.442 37.037 0.00 0.00 0.00 2.74
111 112 5.376625 TCAAGGTTAGATGGTGAATATGGC 58.623 41.667 0.00 0.00 0.00 4.40
112 113 4.373156 AGGTTAGATGGTGAATATGGCC 57.627 45.455 0.00 0.00 0.00 5.36
113 114 3.983410 AGGTTAGATGGTGAATATGGCCT 59.017 43.478 3.32 0.00 0.00 5.19
114 115 4.416848 AGGTTAGATGGTGAATATGGCCTT 59.583 41.667 3.32 0.00 0.00 4.35
115 116 4.762251 GGTTAGATGGTGAATATGGCCTTC 59.238 45.833 3.32 0.00 0.00 3.46
116 117 5.456763 GGTTAGATGGTGAATATGGCCTTCT 60.457 44.000 3.32 11.15 39.26 2.85
117 118 6.239887 GGTTAGATGGTGAATATGGCCTTCTA 60.240 42.308 3.32 9.83 37.74 2.10
118 119 5.495926 AGATGGTGAATATGGCCTTCTAG 57.504 43.478 3.32 0.00 35.76 2.43
119 120 5.158141 AGATGGTGAATATGGCCTTCTAGA 58.842 41.667 3.32 0.00 35.76 2.43
120 121 4.963318 TGGTGAATATGGCCTTCTAGAG 57.037 45.455 3.32 0.00 0.00 2.43
121 122 3.071602 TGGTGAATATGGCCTTCTAGAGC 59.928 47.826 3.32 0.00 0.00 4.09
131 132 3.813443 GCCTTCTAGAGCCATGAATTCA 58.187 45.455 11.26 11.26 0.00 2.57
132 133 4.202441 GCCTTCTAGAGCCATGAATTCAA 58.798 43.478 13.09 0.00 0.00 2.69
133 134 4.036144 GCCTTCTAGAGCCATGAATTCAAC 59.964 45.833 13.09 5.34 0.00 3.18
134 135 4.272018 CCTTCTAGAGCCATGAATTCAACG 59.728 45.833 13.09 6.74 0.00 4.10
135 136 3.797039 TCTAGAGCCATGAATTCAACGG 58.203 45.455 13.09 16.44 0.00 4.44
136 137 2.787473 AGAGCCATGAATTCAACGGA 57.213 45.000 24.42 0.00 0.00 4.69
137 138 2.359900 AGAGCCATGAATTCAACGGAC 58.640 47.619 24.42 17.87 0.00 4.79
138 139 2.026822 AGAGCCATGAATTCAACGGACT 60.027 45.455 24.42 20.21 0.00 3.85
139 140 2.749621 GAGCCATGAATTCAACGGACTT 59.250 45.455 24.42 12.62 0.00 3.01
140 141 2.489329 AGCCATGAATTCAACGGACTTG 59.511 45.455 24.42 12.20 0.00 3.16
141 142 2.228822 GCCATGAATTCAACGGACTTGT 59.771 45.455 24.42 0.00 0.00 3.16
142 143 3.305335 GCCATGAATTCAACGGACTTGTT 60.305 43.478 24.42 0.00 0.00 2.83
143 144 4.795962 GCCATGAATTCAACGGACTTGTTT 60.796 41.667 24.42 0.00 0.00 2.83
144 145 5.288804 CCATGAATTCAACGGACTTGTTTT 58.711 37.500 18.22 0.00 0.00 2.43
145 146 5.752955 CCATGAATTCAACGGACTTGTTTTT 59.247 36.000 18.22 0.00 0.00 1.94
146 147 6.074356 CCATGAATTCAACGGACTTGTTTTTC 60.074 38.462 18.22 0.00 0.00 2.29
147 148 5.344884 TGAATTCAACGGACTTGTTTTTCC 58.655 37.500 5.45 0.00 0.00 3.13
148 149 5.126384 TGAATTCAACGGACTTGTTTTTCCT 59.874 36.000 5.45 0.00 0.00 3.36
149 150 4.625972 TTCAACGGACTTGTTTTTCCTC 57.374 40.909 0.00 0.00 0.00 3.71
150 151 2.946990 TCAACGGACTTGTTTTTCCTCC 59.053 45.455 0.00 0.00 0.00 4.30
151 152 2.949644 CAACGGACTTGTTTTTCCTCCT 59.050 45.455 0.00 0.00 0.00 3.69
152 153 4.131596 CAACGGACTTGTTTTTCCTCCTA 58.868 43.478 0.00 0.00 0.00 2.94
153 154 4.426736 ACGGACTTGTTTTTCCTCCTAA 57.573 40.909 0.00 0.00 0.00 2.69
154 155 4.784177 ACGGACTTGTTTTTCCTCCTAAA 58.216 39.130 0.00 0.00 0.00 1.85
155 156 5.195185 ACGGACTTGTTTTTCCTCCTAAAA 58.805 37.500 0.00 0.00 0.00 1.52
156 157 5.831525 ACGGACTTGTTTTTCCTCCTAAAAT 59.168 36.000 0.00 0.00 0.00 1.82
157 158 6.322969 ACGGACTTGTTTTTCCTCCTAAAATT 59.677 34.615 0.00 0.00 0.00 1.82
158 159 6.640907 CGGACTTGTTTTTCCTCCTAAAATTG 59.359 38.462 0.00 0.00 0.00 2.32
159 160 7.469456 CGGACTTGTTTTTCCTCCTAAAATTGA 60.469 37.037 0.00 0.00 0.00 2.57
160 161 8.367911 GGACTTGTTTTTCCTCCTAAAATTGAT 58.632 33.333 0.00 0.00 0.00 2.57
198 199 1.770294 AAAAAGTTTGAGTCGGGCCA 58.230 45.000 4.39 0.00 0.00 5.36
199 200 1.029681 AAAAGTTTGAGTCGGGCCAC 58.970 50.000 4.39 0.58 0.00 5.01
200 201 0.822121 AAAGTTTGAGTCGGGCCACC 60.822 55.000 4.39 0.00 0.00 4.61
201 202 1.990160 AAGTTTGAGTCGGGCCACCA 61.990 55.000 4.39 0.00 36.13 4.17
202 203 1.527380 GTTTGAGTCGGGCCACCAA 60.527 57.895 4.39 5.35 36.13 3.67
203 204 0.893727 GTTTGAGTCGGGCCACCAAT 60.894 55.000 4.39 0.00 36.13 3.16
204 205 0.178975 TTTGAGTCGGGCCACCAATT 60.179 50.000 4.39 0.00 36.13 2.32
205 206 0.693622 TTGAGTCGGGCCACCAATTA 59.306 50.000 4.39 0.00 36.13 1.40
206 207 0.251916 TGAGTCGGGCCACCAATTAG 59.748 55.000 4.39 0.00 36.13 1.73
207 208 0.252197 GAGTCGGGCCACCAATTAGT 59.748 55.000 4.39 0.00 36.13 2.24
208 209 1.483415 GAGTCGGGCCACCAATTAGTA 59.517 52.381 4.39 0.00 36.13 1.82
209 210 1.910671 AGTCGGGCCACCAATTAGTAA 59.089 47.619 4.39 0.00 36.13 2.24
210 211 2.508300 AGTCGGGCCACCAATTAGTAAT 59.492 45.455 4.39 0.00 36.13 1.89
211 212 3.053917 AGTCGGGCCACCAATTAGTAATT 60.054 43.478 4.39 2.10 36.13 1.40
212 213 4.164604 AGTCGGGCCACCAATTAGTAATTA 59.835 41.667 4.39 0.00 36.13 1.40
213 214 4.274214 GTCGGGCCACCAATTAGTAATTAC 59.726 45.833 4.39 7.57 36.13 1.89
214 215 4.080469 TCGGGCCACCAATTAGTAATTACA 60.080 41.667 17.65 0.00 36.13 2.41
215 216 4.641094 CGGGCCACCAATTAGTAATTACAA 59.359 41.667 17.65 9.97 36.13 2.41
216 217 5.125739 CGGGCCACCAATTAGTAATTACAAA 59.874 40.000 17.65 2.67 36.13 2.83
217 218 6.183360 CGGGCCACCAATTAGTAATTACAAAT 60.183 38.462 17.65 0.00 36.13 2.32
218 219 7.013464 CGGGCCACCAATTAGTAATTACAAATA 59.987 37.037 17.65 0.00 36.13 1.40
219 220 8.697292 GGGCCACCAATTAGTAATTACAAATAA 58.303 33.333 17.65 8.08 36.50 1.40
220 221 9.524106 GGCCACCAATTAGTAATTACAAATAAC 57.476 33.333 17.65 0.00 0.00 1.89
231 232 9.314321 AGTAATTACAAATAACATCCTCACTCG 57.686 33.333 17.65 0.00 0.00 4.18
232 233 7.553881 AATTACAAATAACATCCTCACTCGG 57.446 36.000 0.00 0.00 0.00 4.63
233 234 4.819105 ACAAATAACATCCTCACTCGGA 57.181 40.909 0.00 0.00 37.50 4.55
234 235 5.359194 ACAAATAACATCCTCACTCGGAT 57.641 39.130 0.00 0.00 44.53 4.18
235 236 5.360591 ACAAATAACATCCTCACTCGGATC 58.639 41.667 0.00 0.00 41.81 3.36
236 237 4.608948 AATAACATCCTCACTCGGATCC 57.391 45.455 0.00 0.00 41.81 3.36
237 238 1.866015 AACATCCTCACTCGGATCCA 58.134 50.000 13.41 0.00 41.81 3.41
238 239 2.094100 ACATCCTCACTCGGATCCAT 57.906 50.000 13.41 0.00 41.81 3.41
239 240 2.402564 ACATCCTCACTCGGATCCATT 58.597 47.619 13.41 0.00 41.81 3.16
240 241 2.774234 ACATCCTCACTCGGATCCATTT 59.226 45.455 13.41 0.00 41.81 2.32
241 242 3.200825 ACATCCTCACTCGGATCCATTTT 59.799 43.478 13.41 0.00 41.81 1.82
242 243 4.408921 ACATCCTCACTCGGATCCATTTTA 59.591 41.667 13.41 0.00 41.81 1.52
243 244 5.072329 ACATCCTCACTCGGATCCATTTTAT 59.928 40.000 13.41 0.00 41.81 1.40
244 245 5.630415 TCCTCACTCGGATCCATTTTATT 57.370 39.130 13.41 0.00 0.00 1.40
245 246 6.001449 TCCTCACTCGGATCCATTTTATTT 57.999 37.500 13.41 0.00 0.00 1.40
246 247 5.822519 TCCTCACTCGGATCCATTTTATTTG 59.177 40.000 13.41 0.00 0.00 2.32
247 248 5.822519 CCTCACTCGGATCCATTTTATTTGA 59.177 40.000 13.41 1.59 0.00 2.69
248 249 6.488006 CCTCACTCGGATCCATTTTATTTGAT 59.512 38.462 13.41 0.00 0.00 2.57
249 250 7.661437 CCTCACTCGGATCCATTTTATTTGATA 59.339 37.037 13.41 0.00 0.00 2.15
250 251 9.224267 CTCACTCGGATCCATTTTATTTGATAT 57.776 33.333 13.41 0.00 0.00 1.63
251 252 9.573166 TCACTCGGATCCATTTTATTTGATATT 57.427 29.630 13.41 0.00 0.00 1.28
252 253 9.616634 CACTCGGATCCATTTTATTTGATATTG 57.383 33.333 13.41 0.00 0.00 1.90
253 254 8.299570 ACTCGGATCCATTTTATTTGATATTGC 58.700 33.333 13.41 0.00 0.00 3.56
254 255 7.601856 TCGGATCCATTTTATTTGATATTGCC 58.398 34.615 13.41 0.00 0.00 4.52
255 256 7.451255 TCGGATCCATTTTATTTGATATTGCCT 59.549 33.333 13.41 0.00 0.00 4.75
256 257 8.090214 CGGATCCATTTTATTTGATATTGCCTT 58.910 33.333 13.41 0.00 0.00 4.35
268 269 8.893219 TTTGATATTGCCTTAGTATGTCAGAG 57.107 34.615 0.00 0.00 0.00 3.35
269 270 6.997655 TGATATTGCCTTAGTATGTCAGAGG 58.002 40.000 0.00 0.00 0.00 3.69
270 271 4.696479 ATTGCCTTAGTATGTCAGAGGG 57.304 45.455 0.00 0.00 0.00 4.30
271 272 3.398318 TGCCTTAGTATGTCAGAGGGA 57.602 47.619 0.00 0.00 0.00 4.20
272 273 3.719871 TGCCTTAGTATGTCAGAGGGAA 58.280 45.455 0.00 0.00 0.00 3.97
273 274 4.298626 TGCCTTAGTATGTCAGAGGGAAT 58.701 43.478 0.00 0.00 0.00 3.01
274 275 5.464069 TGCCTTAGTATGTCAGAGGGAATA 58.536 41.667 0.00 0.00 0.00 1.75
275 276 5.903010 TGCCTTAGTATGTCAGAGGGAATAA 59.097 40.000 0.00 0.00 0.00 1.40
276 277 6.558775 TGCCTTAGTATGTCAGAGGGAATAAT 59.441 38.462 0.00 0.00 0.00 1.28
277 278 7.733047 TGCCTTAGTATGTCAGAGGGAATAATA 59.267 37.037 0.00 0.00 0.00 0.98
278 279 8.763601 GCCTTAGTATGTCAGAGGGAATAATAT 58.236 37.037 0.00 0.00 0.00 1.28
285 286 7.807977 TGTCAGAGGGAATAATATTTTCTGC 57.192 36.000 13.48 10.82 32.67 4.26
286 287 7.345691 TGTCAGAGGGAATAATATTTTCTGCA 58.654 34.615 13.48 12.28 32.67 4.41
287 288 8.000709 TGTCAGAGGGAATAATATTTTCTGCAT 58.999 33.333 13.48 0.00 32.67 3.96
288 289 8.854117 GTCAGAGGGAATAATATTTTCTGCATT 58.146 33.333 13.48 0.00 32.67 3.56
304 305 9.545105 TTTTCTGCATTAAAATTCAACTCATGT 57.455 25.926 3.64 0.00 0.00 3.21
305 306 9.545105 TTTCTGCATTAAAATTCAACTCATGTT 57.455 25.926 0.00 0.00 36.75 2.71
306 307 8.746922 TCTGCATTAAAATTCAACTCATGTTC 57.253 30.769 0.00 0.00 33.52 3.18
307 308 7.538334 TCTGCATTAAAATTCAACTCATGTTCG 59.462 33.333 0.00 0.00 33.52 3.95
308 309 7.144661 TGCATTAAAATTCAACTCATGTTCGT 58.855 30.769 0.00 0.00 33.52 3.85
309 310 8.293157 TGCATTAAAATTCAACTCATGTTCGTA 58.707 29.630 0.00 0.00 33.52 3.43
310 311 9.123709 GCATTAAAATTCAACTCATGTTCGTAA 57.876 29.630 0.00 0.00 33.52 3.18
315 316 9.796120 AAAATTCAACTCATGTTCGTAAAAGAA 57.204 25.926 0.00 0.00 33.52 2.52
316 317 9.796120 AAATTCAACTCATGTTCGTAAAAGAAA 57.204 25.926 0.00 0.00 33.52 2.52
317 318 9.796120 AATTCAACTCATGTTCGTAAAAGAAAA 57.204 25.926 0.00 0.00 33.52 2.29
318 319 9.965824 ATTCAACTCATGTTCGTAAAAGAAAAT 57.034 25.926 0.00 0.00 33.52 1.82
319 320 9.445786 TTCAACTCATGTTCGTAAAAGAAAATC 57.554 29.630 0.00 0.00 33.52 2.17
320 321 8.616942 TCAACTCATGTTCGTAAAAGAAAATCA 58.383 29.630 0.00 0.00 33.52 2.57
321 322 9.232082 CAACTCATGTTCGTAAAAGAAAATCAA 57.768 29.630 0.00 0.00 33.52 2.57
322 323 8.782533 ACTCATGTTCGTAAAAGAAAATCAAC 57.217 30.769 0.00 0.00 0.00 3.18
323 324 8.621286 ACTCATGTTCGTAAAAGAAAATCAACT 58.379 29.630 0.00 0.00 0.00 3.16
324 325 9.107367 CTCATGTTCGTAAAAGAAAATCAACTC 57.893 33.333 0.00 0.00 0.00 3.01
325 326 8.616942 TCATGTTCGTAAAAGAAAATCAACTCA 58.383 29.630 0.00 0.00 0.00 3.41
326 327 9.398170 CATGTTCGTAAAAGAAAATCAACTCAT 57.602 29.630 0.00 0.00 0.00 2.90
327 328 8.781067 TGTTCGTAAAAGAAAATCAACTCATG 57.219 30.769 0.00 0.00 0.00 3.07
328 329 8.402472 TGTTCGTAAAAGAAAATCAACTCATGT 58.598 29.630 0.00 0.00 0.00 3.21
329 330 9.233232 GTTCGTAAAAGAAAATCAACTCATGTT 57.767 29.630 0.00 0.00 36.75 2.71
330 331 9.796120 TTCGTAAAAGAAAATCAACTCATGTTT 57.204 25.926 0.00 0.00 33.52 2.83
331 332 9.796120 TCGTAAAAGAAAATCAACTCATGTTTT 57.204 25.926 0.00 0.00 33.52 2.43
362 363 9.811995 AGCATAGTTATTATTACACTCGTGAAA 57.188 29.630 3.74 0.00 0.00 2.69
370 371 7.878477 TTATTACACTCGTGAAAAGGTACTG 57.122 36.000 3.74 0.00 40.86 2.74
371 372 2.480845 ACACTCGTGAAAAGGTACTGC 58.519 47.619 3.74 0.00 40.86 4.40
372 373 2.159014 ACACTCGTGAAAAGGTACTGCA 60.159 45.455 3.74 0.00 40.86 4.41
373 374 3.067106 CACTCGTGAAAAGGTACTGCAT 58.933 45.455 0.00 0.00 40.86 3.96
374 375 3.067106 ACTCGTGAAAAGGTACTGCATG 58.933 45.455 0.00 0.00 40.86 4.06
375 376 1.804151 TCGTGAAAAGGTACTGCATGC 59.196 47.619 11.82 11.82 40.86 4.06
376 377 1.535028 CGTGAAAAGGTACTGCATGCA 59.465 47.619 21.29 21.29 40.86 3.96
377 378 2.162208 CGTGAAAAGGTACTGCATGCAT 59.838 45.455 22.97 13.83 40.86 3.96
378 379 3.728864 CGTGAAAAGGTACTGCATGCATC 60.729 47.826 22.97 13.60 40.86 3.91
379 380 3.191162 GTGAAAAGGTACTGCATGCATCA 59.809 43.478 22.97 16.20 40.86 3.07
380 381 3.825585 TGAAAAGGTACTGCATGCATCAA 59.174 39.130 22.97 6.76 40.86 2.57
381 382 4.463539 TGAAAAGGTACTGCATGCATCAAT 59.536 37.500 22.97 9.85 40.86 2.57
382 383 5.651576 TGAAAAGGTACTGCATGCATCAATA 59.348 36.000 22.97 8.82 40.86 1.90
383 384 6.321945 TGAAAAGGTACTGCATGCATCAATAT 59.678 34.615 22.97 4.02 40.86 1.28
384 385 5.954296 AAGGTACTGCATGCATCAATATC 57.046 39.130 22.97 11.63 40.86 1.63
385 386 4.330250 AGGTACTGCATGCATCAATATCC 58.670 43.478 22.97 15.62 37.18 2.59
386 387 4.074259 GGTACTGCATGCATCAATATCCA 58.926 43.478 22.97 0.00 0.00 3.41
387 388 4.083110 GGTACTGCATGCATCAATATCCAC 60.083 45.833 22.97 8.23 0.00 4.02
388 389 3.558033 ACTGCATGCATCAATATCCACA 58.442 40.909 22.97 0.00 0.00 4.17
389 390 3.317149 ACTGCATGCATCAATATCCACAC 59.683 43.478 22.97 0.00 0.00 3.82
390 391 3.288964 TGCATGCATCAATATCCACACA 58.711 40.909 18.46 0.00 0.00 3.72
391 392 3.892588 TGCATGCATCAATATCCACACAT 59.107 39.130 18.46 0.00 0.00 3.21
392 393 4.342665 TGCATGCATCAATATCCACACATT 59.657 37.500 18.46 0.00 0.00 2.71
393 394 5.535406 TGCATGCATCAATATCCACACATTA 59.465 36.000 18.46 0.00 0.00 1.90
394 395 6.209788 TGCATGCATCAATATCCACACATTAT 59.790 34.615 18.46 0.00 0.00 1.28
395 396 7.094631 GCATGCATCAATATCCACACATTATT 58.905 34.615 14.21 0.00 0.00 1.40
396 397 7.601130 GCATGCATCAATATCCACACATTATTT 59.399 33.333 14.21 0.00 0.00 1.40
397 398 9.483916 CATGCATCAATATCCACACATTATTTT 57.516 29.630 0.00 0.00 0.00 1.82
409 410 9.120538 TCCACACATTATTTTATTCTAAGAGGC 57.879 33.333 0.00 0.00 0.00 4.70
410 411 9.125026 CCACACATTATTTTATTCTAAGAGGCT 57.875 33.333 0.00 0.00 0.00 4.58
411 412 9.941664 CACACATTATTTTATTCTAAGAGGCTG 57.058 33.333 0.00 0.00 0.00 4.85
412 413 8.624776 ACACATTATTTTATTCTAAGAGGCTGC 58.375 33.333 0.00 0.00 0.00 5.25
413 414 8.844244 CACATTATTTTATTCTAAGAGGCTGCT 58.156 33.333 0.00 0.00 0.00 4.24
414 415 9.413734 ACATTATTTTATTCTAAGAGGCTGCTT 57.586 29.630 0.00 0.00 0.00 3.91
447 448 8.697507 ATTCTCATATTCCACACCCTTATTTC 57.302 34.615 0.00 0.00 0.00 2.17
448 449 7.206789 TCTCATATTCCACACCCTTATTTCA 57.793 36.000 0.00 0.00 0.00 2.69
449 450 7.638444 TCTCATATTCCACACCCTTATTTCAA 58.362 34.615 0.00 0.00 0.00 2.69
450 451 8.281531 TCTCATATTCCACACCCTTATTTCAAT 58.718 33.333 0.00 0.00 0.00 2.57
451 452 8.236585 TCATATTCCACACCCTTATTTCAATG 57.763 34.615 0.00 0.00 0.00 2.82
452 453 5.937975 ATTCCACACCCTTATTTCAATGG 57.062 39.130 0.00 0.00 0.00 3.16
453 454 4.396357 TCCACACCCTTATTTCAATGGT 57.604 40.909 0.00 0.00 0.00 3.55
457 458 2.168313 CACCCTTATTTCAATGGTGGGC 59.832 50.000 0.00 0.00 42.16 5.36
458 459 2.225496 ACCCTTATTTCAATGGTGGGCA 60.225 45.455 0.00 0.00 36.78 5.36
459 460 3.040477 CCCTTATTTCAATGGTGGGCAT 58.960 45.455 0.00 0.00 0.00 4.40
460 461 3.455543 CCCTTATTTCAATGGTGGGCATT 59.544 43.478 0.00 0.00 0.00 3.56
461 462 4.080413 CCCTTATTTCAATGGTGGGCATTT 60.080 41.667 0.00 0.00 0.00 2.32
462 463 5.118286 CCTTATTTCAATGGTGGGCATTTC 58.882 41.667 0.00 0.00 0.00 2.17
463 464 5.104817 CCTTATTTCAATGGTGGGCATTTCT 60.105 40.000 0.00 0.00 0.00 2.52
464 465 4.914177 ATTTCAATGGTGGGCATTTCTT 57.086 36.364 0.00 0.00 0.00 2.52
465 466 3.959535 TTCAATGGTGGGCATTTCTTC 57.040 42.857 0.00 0.00 0.00 2.87
466 467 3.173953 TCAATGGTGGGCATTTCTTCT 57.826 42.857 0.00 0.00 0.00 2.85
467 468 3.091545 TCAATGGTGGGCATTTCTTCTC 58.908 45.455 0.00 0.00 0.00 2.87
468 469 2.827322 CAATGGTGGGCATTTCTTCTCA 59.173 45.455 0.00 0.00 0.00 3.27
469 470 1.909700 TGGTGGGCATTTCTTCTCAC 58.090 50.000 0.00 0.00 0.00 3.51
470 471 1.144708 TGGTGGGCATTTCTTCTCACA 59.855 47.619 0.00 0.00 0.00 3.58
471 472 1.541588 GGTGGGCATTTCTTCTCACAC 59.458 52.381 0.00 0.00 0.00 3.82
472 473 2.508526 GTGGGCATTTCTTCTCACACT 58.491 47.619 0.00 0.00 0.00 3.55
473 474 2.485814 GTGGGCATTTCTTCTCACACTC 59.514 50.000 0.00 0.00 0.00 3.51
474 475 2.087646 GGGCATTTCTTCTCACACTCC 58.912 52.381 0.00 0.00 0.00 3.85
475 476 2.290577 GGGCATTTCTTCTCACACTCCT 60.291 50.000 0.00 0.00 0.00 3.69
476 477 3.006247 GGCATTTCTTCTCACACTCCTC 58.994 50.000 0.00 0.00 0.00 3.71
477 478 3.307339 GGCATTTCTTCTCACACTCCTCT 60.307 47.826 0.00 0.00 0.00 3.69
478 479 3.683822 GCATTTCTTCTCACACTCCTCTG 59.316 47.826 0.00 0.00 0.00 3.35
479 480 3.393089 TTTCTTCTCACACTCCTCTGC 57.607 47.619 0.00 0.00 0.00 4.26
480 481 0.884514 TCTTCTCACACTCCTCTGCG 59.115 55.000 0.00 0.00 0.00 5.18
481 482 0.108898 CTTCTCACACTCCTCTGCGG 60.109 60.000 0.00 0.00 0.00 5.69
482 483 0.827925 TTCTCACACTCCTCTGCGGT 60.828 55.000 0.00 0.00 0.00 5.68
483 484 0.037734 TCTCACACTCCTCTGCGGTA 59.962 55.000 0.00 0.00 0.00 4.02
484 485 1.107114 CTCACACTCCTCTGCGGTAT 58.893 55.000 0.00 0.00 0.00 2.73
485 486 0.817654 TCACACTCCTCTGCGGTATG 59.182 55.000 0.00 0.00 0.00 2.39
486 487 0.817654 CACACTCCTCTGCGGTATGA 59.182 55.000 0.00 0.00 0.00 2.15
487 488 1.204704 CACACTCCTCTGCGGTATGAA 59.795 52.381 0.00 0.00 0.00 2.57
488 489 1.899814 ACACTCCTCTGCGGTATGAAA 59.100 47.619 0.00 0.00 0.00 2.69
489 490 2.301870 ACACTCCTCTGCGGTATGAAAA 59.698 45.455 0.00 0.00 0.00 2.29
490 491 2.673368 CACTCCTCTGCGGTATGAAAAC 59.327 50.000 0.00 0.00 0.00 2.43
491 492 2.301870 ACTCCTCTGCGGTATGAAAACA 59.698 45.455 0.00 0.00 0.00 2.83
492 493 2.673368 CTCCTCTGCGGTATGAAAACAC 59.327 50.000 0.00 0.00 0.00 3.32
493 494 1.393539 CCTCTGCGGTATGAAAACACG 59.606 52.381 0.00 0.00 0.00 4.49
494 495 1.393539 CTCTGCGGTATGAAAACACGG 59.606 52.381 0.00 0.00 0.00 4.94
495 496 1.153353 CTGCGGTATGAAAACACGGT 58.847 50.000 0.00 0.00 0.00 4.83
496 497 2.029200 TCTGCGGTATGAAAACACGGTA 60.029 45.455 0.00 0.00 0.00 4.02
497 498 2.067766 TGCGGTATGAAAACACGGTAC 58.932 47.619 0.00 0.00 0.00 3.34
498 499 2.067766 GCGGTATGAAAACACGGTACA 58.932 47.619 0.00 0.00 0.00 2.90
499 500 2.159801 GCGGTATGAAAACACGGTACAC 60.160 50.000 0.00 0.00 0.00 2.90
500 501 2.412770 CGGTATGAAAACACGGTACACC 59.587 50.000 0.00 0.00 0.00 4.16
501 502 2.743664 GGTATGAAAACACGGTACACCC 59.256 50.000 0.00 0.00 0.00 4.61
510 511 4.926207 GGTACACCCGGCTTAGTG 57.074 61.111 6.99 6.99 39.93 2.74
511 512 2.279842 GGTACACCCGGCTTAGTGA 58.720 57.895 14.51 0.00 37.43 3.41
512 513 0.175073 GGTACACCCGGCTTAGTGAG 59.825 60.000 14.51 0.00 37.43 3.51
513 514 0.175073 GTACACCCGGCTTAGTGAGG 59.825 60.000 14.51 0.00 37.43 3.86
514 515 0.251922 TACACCCGGCTTAGTGAGGT 60.252 55.000 14.51 0.00 37.43 3.85
515 516 0.251922 ACACCCGGCTTAGTGAGGTA 60.252 55.000 14.51 0.00 37.43 3.08
516 517 0.460311 CACCCGGCTTAGTGAGGTAG 59.540 60.000 0.00 0.00 36.01 3.18
517 518 1.328430 ACCCGGCTTAGTGAGGTAGC 61.328 60.000 0.00 0.00 0.00 3.58
518 519 1.327690 CCCGGCTTAGTGAGGTAGCA 61.328 60.000 0.00 0.00 36.64 3.49
519 520 0.103208 CCGGCTTAGTGAGGTAGCAG 59.897 60.000 0.00 0.00 36.64 4.24
520 521 0.818296 CGGCTTAGTGAGGTAGCAGT 59.182 55.000 0.00 0.00 36.64 4.40
521 522 2.022195 CGGCTTAGTGAGGTAGCAGTA 58.978 52.381 0.00 0.00 36.64 2.74
522 523 2.033550 CGGCTTAGTGAGGTAGCAGTAG 59.966 54.545 0.00 0.00 36.64 2.57
523 524 2.223852 GGCTTAGTGAGGTAGCAGTAGC 60.224 54.545 0.00 0.00 42.56 3.58
524 525 2.427453 GCTTAGTGAGGTAGCAGTAGCA 59.573 50.000 0.00 0.00 45.49 3.49
525 526 3.735514 GCTTAGTGAGGTAGCAGTAGCAC 60.736 52.174 0.00 0.00 45.49 4.40
526 527 2.223803 AGTGAGGTAGCAGTAGCACT 57.776 50.000 0.00 0.00 45.49 4.40
527 528 2.096248 AGTGAGGTAGCAGTAGCACTC 58.904 52.381 0.00 0.00 45.49 3.51
528 529 2.096248 GTGAGGTAGCAGTAGCACTCT 58.904 52.381 0.00 0.00 45.49 3.24
529 530 2.095461 TGAGGTAGCAGTAGCACTCTG 58.905 52.381 0.00 0.00 45.49 3.35
530 531 1.407258 GAGGTAGCAGTAGCACTCTGG 59.593 57.143 0.00 0.00 45.49 3.86
531 532 1.006043 AGGTAGCAGTAGCACTCTGGA 59.994 52.381 0.00 0.00 45.49 3.86
532 533 2.035632 GGTAGCAGTAGCACTCTGGAT 58.964 52.381 5.30 0.00 45.49 3.41
533 534 2.035321 GGTAGCAGTAGCACTCTGGATC 59.965 54.545 5.30 0.00 45.49 3.36
534 535 1.118838 AGCAGTAGCACTCTGGATCC 58.881 55.000 4.20 4.20 45.49 3.36
535 536 0.105778 GCAGTAGCACTCTGGATCCC 59.894 60.000 9.90 0.00 41.58 3.85
536 537 1.489481 CAGTAGCACTCTGGATCCCA 58.511 55.000 9.90 0.00 0.00 4.37
537 538 4.432685 GCAGTAGCACTCTGGATCCCAG 62.433 59.091 9.90 7.80 46.04 4.45
545 546 2.127065 TGGATCCCAGCCCCAGAA 59.873 61.111 9.90 0.00 0.00 3.02
546 547 1.309013 TGGATCCCAGCCCCAGAAT 60.309 57.895 9.90 0.00 0.00 2.40
547 548 0.925720 TGGATCCCAGCCCCAGAATT 60.926 55.000 9.90 0.00 0.00 2.17
548 549 0.178978 GGATCCCAGCCCCAGAATTC 60.179 60.000 0.00 0.00 0.00 2.17
549 550 0.552848 GATCCCAGCCCCAGAATTCA 59.447 55.000 8.44 0.00 0.00 2.57
550 551 0.259938 ATCCCAGCCCCAGAATTCAC 59.740 55.000 8.44 0.00 0.00 3.18
551 552 1.380380 CCCAGCCCCAGAATTCACC 60.380 63.158 8.44 0.00 0.00 4.02
552 553 1.693640 CCAGCCCCAGAATTCACCT 59.306 57.895 8.44 0.00 0.00 4.00
553 554 0.040204 CCAGCCCCAGAATTCACCTT 59.960 55.000 8.44 0.00 0.00 3.50
554 555 1.550869 CCAGCCCCAGAATTCACCTTT 60.551 52.381 8.44 0.00 0.00 3.11
555 556 2.291540 CCAGCCCCAGAATTCACCTTTA 60.292 50.000 8.44 0.00 0.00 1.85
556 557 3.019564 CAGCCCCAGAATTCACCTTTAG 58.980 50.000 8.44 0.00 0.00 1.85
557 558 2.919602 AGCCCCAGAATTCACCTTTAGA 59.080 45.455 8.44 0.00 0.00 2.10
558 559 3.529319 AGCCCCAGAATTCACCTTTAGAT 59.471 43.478 8.44 0.00 0.00 1.98
559 560 3.633986 GCCCCAGAATTCACCTTTAGATG 59.366 47.826 8.44 0.00 0.00 2.90
560 561 4.860022 CCCCAGAATTCACCTTTAGATGT 58.140 43.478 8.44 0.00 0.00 3.06
561 562 5.631481 GCCCCAGAATTCACCTTTAGATGTA 60.631 44.000 8.44 0.00 0.00 2.29
562 563 5.823045 CCCCAGAATTCACCTTTAGATGTAC 59.177 44.000 8.44 0.00 0.00 2.90
563 564 6.414732 CCCAGAATTCACCTTTAGATGTACA 58.585 40.000 8.44 0.00 0.00 2.90
564 565 6.884295 CCCAGAATTCACCTTTAGATGTACAA 59.116 38.462 8.44 0.00 0.00 2.41
565 566 7.557719 CCCAGAATTCACCTTTAGATGTACAAT 59.442 37.037 8.44 0.00 0.00 2.71
566 567 8.960591 CCAGAATTCACCTTTAGATGTACAATT 58.039 33.333 8.44 0.00 0.00 2.32
572 573 9.667107 TTCACCTTTAGATGTACAATTTCTAGG 57.333 33.333 0.00 5.99 0.00 3.02
573 574 9.042450 TCACCTTTAGATGTACAATTTCTAGGA 57.958 33.333 15.95 5.79 0.00 2.94
574 575 9.319143 CACCTTTAGATGTACAATTTCTAGGAG 57.681 37.037 15.95 12.13 0.00 3.69
575 576 8.487028 ACCTTTAGATGTACAATTTCTAGGAGG 58.513 37.037 21.05 21.05 35.45 4.30
576 577 8.705594 CCTTTAGATGTACAATTTCTAGGAGGA 58.294 37.037 19.60 2.11 33.42 3.71
577 578 9.535878 CTTTAGATGTACAATTTCTAGGAGGAC 57.464 37.037 0.00 0.00 0.00 3.85
578 579 8.603898 TTAGATGTACAATTTCTAGGAGGACA 57.396 34.615 0.00 0.00 0.00 4.02
579 580 7.496346 AGATGTACAATTTCTAGGAGGACAA 57.504 36.000 0.00 0.00 0.00 3.18
580 581 7.918076 AGATGTACAATTTCTAGGAGGACAAA 58.082 34.615 0.00 0.00 0.00 2.83
581 582 8.383175 AGATGTACAATTTCTAGGAGGACAAAA 58.617 33.333 0.00 0.00 0.00 2.44
582 583 9.178758 GATGTACAATTTCTAGGAGGACAAAAT 57.821 33.333 0.00 0.00 0.00 1.82
583 584 8.934023 TGTACAATTTCTAGGAGGACAAAATT 57.066 30.769 0.00 0.00 31.54 1.82
584 585 9.362151 TGTACAATTTCTAGGAGGACAAAATTT 57.638 29.630 0.00 0.00 29.54 1.82
585 586 9.841880 GTACAATTTCTAGGAGGACAAAATTTC 57.158 33.333 0.00 0.00 29.54 2.17
586 587 8.477419 ACAATTTCTAGGAGGACAAAATTTCA 57.523 30.769 0.00 0.00 29.54 2.69
587 588 8.360390 ACAATTTCTAGGAGGACAAAATTTCAC 58.640 33.333 0.00 0.00 29.54 3.18
588 589 6.554334 TTTCTAGGAGGACAAAATTTCACG 57.446 37.500 0.00 0.00 0.00 4.35
589 590 4.575885 TCTAGGAGGACAAAATTTCACGG 58.424 43.478 0.00 0.00 0.00 4.94
590 591 3.223674 AGGAGGACAAAATTTCACGGT 57.776 42.857 0.00 0.00 0.00 4.83
591 592 4.360951 AGGAGGACAAAATTTCACGGTA 57.639 40.909 0.00 0.00 0.00 4.02
592 593 4.721132 AGGAGGACAAAATTTCACGGTAA 58.279 39.130 0.00 0.00 0.00 2.85
593 594 5.321927 AGGAGGACAAAATTTCACGGTAAT 58.678 37.500 0.00 0.00 0.00 1.89
594 595 5.773176 AGGAGGACAAAATTTCACGGTAATT 59.227 36.000 0.00 0.00 0.00 1.40
595 596 6.266786 AGGAGGACAAAATTTCACGGTAATTT 59.733 34.615 0.00 0.00 36.91 1.82
596 597 6.926826 GGAGGACAAAATTTCACGGTAATTTT 59.073 34.615 8.01 8.01 42.72 1.82
601 602 6.942891 CAAAATTTCACGGTAATTTTGCTGT 58.057 32.000 20.33 0.00 46.86 4.40
602 603 6.763303 AAATTTCACGGTAATTTTGCTGTC 57.237 33.333 0.00 0.00 32.75 3.51
603 604 4.902443 TTTCACGGTAATTTTGCTGTCA 57.098 36.364 0.00 0.00 29.56 3.58
604 605 5.446143 TTTCACGGTAATTTTGCTGTCAT 57.554 34.783 0.00 0.00 29.56 3.06
605 606 4.678509 TCACGGTAATTTTGCTGTCATC 57.321 40.909 0.00 0.00 29.56 2.92
606 607 4.323417 TCACGGTAATTTTGCTGTCATCT 58.677 39.130 0.00 0.00 29.56 2.90
607 608 5.483811 TCACGGTAATTTTGCTGTCATCTA 58.516 37.500 0.00 0.00 29.56 1.98
608 609 5.935206 TCACGGTAATTTTGCTGTCATCTAA 59.065 36.000 0.00 0.00 29.56 2.10
609 610 6.597672 TCACGGTAATTTTGCTGTCATCTAAT 59.402 34.615 0.00 0.00 29.56 1.73
610 611 6.688385 CACGGTAATTTTGCTGTCATCTAATG 59.312 38.462 0.00 0.00 29.56 1.90
611 612 6.597672 ACGGTAATTTTGCTGTCATCTAATGA 59.402 34.615 0.00 0.00 36.84 2.57
754 756 3.625853 TGACTGAATGGTGGTTTTGACA 58.374 40.909 0.00 0.00 0.00 3.58
1681 1713 2.208132 TGGTGTGAACTGTGGTGTTT 57.792 45.000 0.00 0.00 0.00 2.83
1947 1980 4.219070 CAGGCAATCAATGAACTGAAGGAA 59.781 41.667 0.54 0.00 37.60 3.36
1950 1983 6.013984 AGGCAATCAATGAACTGAAGGAAAAT 60.014 34.615 0.54 0.00 0.00 1.82
1969 2002 6.207614 GGAAAATAAGAAGCAACTTGAGGAGT 59.792 38.462 5.82 0.00 41.47 3.85
2191 2224 5.880901 AGGAAAAGCTGGACAAGATAAAGA 58.119 37.500 0.00 0.00 0.00 2.52
2912 3267 4.457496 GGCGAGCCAGCAGTGCTA 62.457 66.667 19.26 0.00 39.69 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.691526 TCACGTGTCAGTGTAGAGGTTT 59.308 45.455 16.51 0.00 42.40 3.27
1 2 2.293677 CTCACGTGTCAGTGTAGAGGTT 59.706 50.000 16.51 0.00 42.40 3.50
14 15 0.814457 GCTCTGAGATCCTCACGTGT 59.186 55.000 16.51 0.00 35.39 4.49
49 50 5.500931 GCAGAGCACAAATGTACTCGTTATC 60.501 44.000 7.87 0.00 41.97 1.75
50 51 4.330074 GCAGAGCACAAATGTACTCGTTAT 59.670 41.667 7.87 0.00 41.97 1.89
51 52 3.678072 GCAGAGCACAAATGTACTCGTTA 59.322 43.478 7.87 0.00 41.97 3.18
52 53 2.480419 GCAGAGCACAAATGTACTCGTT 59.520 45.455 7.87 0.00 41.97 3.85
53 54 2.069273 GCAGAGCACAAATGTACTCGT 58.931 47.619 7.87 0.00 41.97 4.18
54 55 2.341257 AGCAGAGCACAAATGTACTCG 58.659 47.619 7.87 5.20 41.97 4.18
55 56 3.329386 TGAGCAGAGCACAAATGTACTC 58.671 45.455 5.78 5.78 38.43 2.59
56 57 3.407424 TGAGCAGAGCACAAATGTACT 57.593 42.857 0.00 0.00 0.00 2.73
57 58 5.582269 TCTTATGAGCAGAGCACAAATGTAC 59.418 40.000 0.00 0.00 32.39 2.90
58 59 5.733676 TCTTATGAGCAGAGCACAAATGTA 58.266 37.500 0.00 0.00 32.39 2.29
59 60 4.582869 TCTTATGAGCAGAGCACAAATGT 58.417 39.130 0.00 0.00 32.39 2.71
60 61 5.158101 CTCTTATGAGCAGAGCACAAATG 57.842 43.478 0.00 0.00 32.39 2.32
73 74 7.099764 TCTAACCTTGAAAGTGCTCTTATGAG 58.900 38.462 0.66 1.25 42.96 2.90
74 75 7.004555 TCTAACCTTGAAAGTGCTCTTATGA 57.995 36.000 0.66 0.00 33.09 2.15
75 76 7.201679 CCATCTAACCTTGAAAGTGCTCTTATG 60.202 40.741 0.66 0.00 33.09 1.90
76 77 6.825721 CCATCTAACCTTGAAAGTGCTCTTAT 59.174 38.462 0.66 0.00 33.09 1.73
77 78 6.173339 CCATCTAACCTTGAAAGTGCTCTTA 58.827 40.000 0.66 0.00 33.09 2.10
78 79 5.006386 CCATCTAACCTTGAAAGTGCTCTT 58.994 41.667 0.00 0.00 35.14 2.85
79 80 4.042187 ACCATCTAACCTTGAAAGTGCTCT 59.958 41.667 0.00 0.00 0.00 4.09
80 81 4.154918 CACCATCTAACCTTGAAAGTGCTC 59.845 45.833 0.00 0.00 0.00 4.26
81 82 4.074970 CACCATCTAACCTTGAAAGTGCT 58.925 43.478 0.00 0.00 0.00 4.40
82 83 4.072131 TCACCATCTAACCTTGAAAGTGC 58.928 43.478 0.00 0.00 0.00 4.40
83 84 6.824305 ATTCACCATCTAACCTTGAAAGTG 57.176 37.500 0.00 0.00 30.34 3.16
84 85 7.557719 CCATATTCACCATCTAACCTTGAAAGT 59.442 37.037 0.00 0.00 30.34 2.66
85 86 7.469181 GCCATATTCACCATCTAACCTTGAAAG 60.469 40.741 0.00 0.00 30.34 2.62
86 87 6.321181 GCCATATTCACCATCTAACCTTGAAA 59.679 38.462 0.00 0.00 30.34 2.69
87 88 5.827797 GCCATATTCACCATCTAACCTTGAA 59.172 40.000 0.00 0.00 0.00 2.69
88 89 5.376625 GCCATATTCACCATCTAACCTTGA 58.623 41.667 0.00 0.00 0.00 3.02
89 90 4.520492 GGCCATATTCACCATCTAACCTTG 59.480 45.833 0.00 0.00 0.00 3.61
90 91 4.416848 AGGCCATATTCACCATCTAACCTT 59.583 41.667 5.01 0.00 0.00 3.50
91 92 3.983410 AGGCCATATTCACCATCTAACCT 59.017 43.478 5.01 0.00 0.00 3.50
92 93 4.373156 AGGCCATATTCACCATCTAACC 57.627 45.455 5.01 0.00 0.00 2.85
93 94 5.625150 AGAAGGCCATATTCACCATCTAAC 58.375 41.667 5.01 0.00 30.09 2.34
94 95 5.912149 AGAAGGCCATATTCACCATCTAA 57.088 39.130 5.01 0.00 30.09 2.10
95 96 6.322931 TCTAGAAGGCCATATTCACCATCTA 58.677 40.000 5.01 0.00 33.76 1.98
96 97 5.158141 TCTAGAAGGCCATATTCACCATCT 58.842 41.667 5.01 0.00 35.75 2.90
97 98 5.486526 CTCTAGAAGGCCATATTCACCATC 58.513 45.833 5.01 0.00 0.00 3.51
98 99 4.263243 GCTCTAGAAGGCCATATTCACCAT 60.263 45.833 5.01 0.00 0.00 3.55
99 100 3.071602 GCTCTAGAAGGCCATATTCACCA 59.928 47.826 5.01 0.00 0.00 4.17
100 101 3.558109 GGCTCTAGAAGGCCATATTCACC 60.558 52.174 16.21 0.00 46.84 4.02
101 102 3.669536 GGCTCTAGAAGGCCATATTCAC 58.330 50.000 16.21 0.00 46.84 3.18
111 112 4.272018 CGTTGAATTCATGGCTCTAGAAGG 59.728 45.833 9.40 0.00 0.00 3.46
112 113 4.272018 CCGTTGAATTCATGGCTCTAGAAG 59.728 45.833 9.40 0.00 0.00 2.85
113 114 4.081142 TCCGTTGAATTCATGGCTCTAGAA 60.081 41.667 18.08 1.88 0.00 2.10
114 115 3.450817 TCCGTTGAATTCATGGCTCTAGA 59.549 43.478 18.08 0.00 0.00 2.43
115 116 3.557595 GTCCGTTGAATTCATGGCTCTAG 59.442 47.826 18.08 0.00 0.00 2.43
116 117 3.197766 AGTCCGTTGAATTCATGGCTCTA 59.802 43.478 18.08 3.32 0.00 2.43
117 118 2.026822 AGTCCGTTGAATTCATGGCTCT 60.027 45.455 18.08 15.52 0.00 4.09
118 119 2.359900 AGTCCGTTGAATTCATGGCTC 58.640 47.619 18.08 14.10 0.00 4.70
119 120 2.489329 CAAGTCCGTTGAATTCATGGCT 59.511 45.455 18.08 15.54 38.60 4.75
120 121 2.228822 ACAAGTCCGTTGAATTCATGGC 59.771 45.455 18.08 14.08 38.60 4.40
121 122 4.503741 AACAAGTCCGTTGAATTCATGG 57.496 40.909 17.19 17.19 38.60 3.66
122 123 6.074356 GGAAAAACAAGTCCGTTGAATTCATG 60.074 38.462 9.40 5.21 38.60 3.07
123 124 5.983118 GGAAAAACAAGTCCGTTGAATTCAT 59.017 36.000 9.40 0.00 38.60 2.57
124 125 5.126384 AGGAAAAACAAGTCCGTTGAATTCA 59.874 36.000 3.38 3.38 38.60 2.57
125 126 5.588240 AGGAAAAACAAGTCCGTTGAATTC 58.412 37.500 0.00 0.00 38.60 2.17
126 127 5.451381 GGAGGAAAAACAAGTCCGTTGAATT 60.451 40.000 0.00 0.00 38.60 2.17
127 128 4.037565 GGAGGAAAAACAAGTCCGTTGAAT 59.962 41.667 0.00 0.00 38.60 2.57
128 129 3.379057 GGAGGAAAAACAAGTCCGTTGAA 59.621 43.478 0.00 0.00 38.60 2.69
129 130 2.946990 GGAGGAAAAACAAGTCCGTTGA 59.053 45.455 0.00 0.00 38.60 3.18
130 131 2.949644 AGGAGGAAAAACAAGTCCGTTG 59.050 45.455 0.00 0.00 42.48 4.10
131 132 3.292492 AGGAGGAAAAACAAGTCCGTT 57.708 42.857 0.00 0.00 39.06 4.44
132 133 4.426736 TTAGGAGGAAAAACAAGTCCGT 57.573 40.909 0.00 0.00 39.06 4.69
133 134 5.761165 TTTTAGGAGGAAAAACAAGTCCG 57.239 39.130 0.00 0.00 39.06 4.79
134 135 7.722363 TCAATTTTAGGAGGAAAAACAAGTCC 58.278 34.615 0.00 0.00 32.29 3.85
179 180 1.407618 GTGGCCCGACTCAAACTTTTT 59.592 47.619 0.00 0.00 0.00 1.94
180 181 1.029681 GTGGCCCGACTCAAACTTTT 58.970 50.000 0.00 0.00 0.00 2.27
181 182 0.822121 GGTGGCCCGACTCAAACTTT 60.822 55.000 0.00 0.00 0.00 2.66
182 183 1.228154 GGTGGCCCGACTCAAACTT 60.228 57.895 0.00 0.00 0.00 2.66
183 184 1.990160 TTGGTGGCCCGACTCAAACT 61.990 55.000 0.00 0.00 0.00 2.66
184 185 0.893727 ATTGGTGGCCCGACTCAAAC 60.894 55.000 0.00 0.00 0.00 2.93
185 186 0.178975 AATTGGTGGCCCGACTCAAA 60.179 50.000 0.00 0.00 0.00 2.69
186 187 0.693622 TAATTGGTGGCCCGACTCAA 59.306 50.000 0.00 0.00 0.00 3.02
187 188 0.251916 CTAATTGGTGGCCCGACTCA 59.748 55.000 0.00 0.00 0.00 3.41
188 189 0.252197 ACTAATTGGTGGCCCGACTC 59.748 55.000 0.00 0.00 0.00 3.36
189 190 1.575419 TACTAATTGGTGGCCCGACT 58.425 50.000 4.47 0.00 0.00 4.18
190 191 2.406596 TTACTAATTGGTGGCCCGAC 57.593 50.000 4.47 0.00 0.00 4.79
191 192 3.655615 AATTACTAATTGGTGGCCCGA 57.344 42.857 4.47 0.00 0.00 5.14
192 193 4.200874 TGTAATTACTAATTGGTGGCCCG 58.799 43.478 16.33 0.00 32.38 6.13
193 194 6.532988 TTTGTAATTACTAATTGGTGGCCC 57.467 37.500 16.33 0.00 32.38 5.80
194 195 9.524106 GTTATTTGTAATTACTAATTGGTGGCC 57.476 33.333 23.88 0.00 34.44 5.36
205 206 9.314321 CGAGTGAGGATGTTATTTGTAATTACT 57.686 33.333 16.33 0.00 0.00 2.24
206 207 8.548721 CCGAGTGAGGATGTTATTTGTAATTAC 58.451 37.037 8.75 8.75 0.00 1.89
207 208 8.479689 TCCGAGTGAGGATGTTATTTGTAATTA 58.520 33.333 0.00 0.00 34.92 1.40
208 209 7.335627 TCCGAGTGAGGATGTTATTTGTAATT 58.664 34.615 0.00 0.00 34.92 1.40
209 210 6.884832 TCCGAGTGAGGATGTTATTTGTAAT 58.115 36.000 0.00 0.00 34.92 1.89
210 211 6.288941 TCCGAGTGAGGATGTTATTTGTAA 57.711 37.500 0.00 0.00 34.92 2.41
211 212 5.925506 TCCGAGTGAGGATGTTATTTGTA 57.074 39.130 0.00 0.00 34.92 2.41
212 213 4.819105 TCCGAGTGAGGATGTTATTTGT 57.181 40.909 0.00 0.00 34.92 2.83
222 223 5.630415 AATAAAATGGATCCGAGTGAGGA 57.370 39.130 7.39 0.00 45.54 3.71
223 224 5.822519 TCAAATAAAATGGATCCGAGTGAGG 59.177 40.000 7.39 0.00 0.00 3.86
224 225 6.925610 TCAAATAAAATGGATCCGAGTGAG 57.074 37.500 7.39 0.00 0.00 3.51
225 226 9.573166 AATATCAAATAAAATGGATCCGAGTGA 57.427 29.630 7.39 2.54 0.00 3.41
226 227 9.616634 CAATATCAAATAAAATGGATCCGAGTG 57.383 33.333 7.39 0.00 0.00 3.51
227 228 8.299570 GCAATATCAAATAAAATGGATCCGAGT 58.700 33.333 7.39 0.00 0.00 4.18
228 229 7.756722 GGCAATATCAAATAAAATGGATCCGAG 59.243 37.037 7.39 0.00 0.00 4.63
229 230 7.451255 AGGCAATATCAAATAAAATGGATCCGA 59.549 33.333 7.39 0.00 0.00 4.55
230 231 7.605449 AGGCAATATCAAATAAAATGGATCCG 58.395 34.615 7.39 0.00 0.00 4.18
242 243 9.499479 CTCTGACATACTAAGGCAATATCAAAT 57.501 33.333 0.00 0.00 0.00 2.32
243 244 7.933577 CCTCTGACATACTAAGGCAATATCAAA 59.066 37.037 0.00 0.00 0.00 2.69
244 245 7.445121 CCTCTGACATACTAAGGCAATATCAA 58.555 38.462 0.00 0.00 0.00 2.57
245 246 6.014242 CCCTCTGACATACTAAGGCAATATCA 60.014 42.308 0.00 0.00 0.00 2.15
246 247 6.211584 TCCCTCTGACATACTAAGGCAATATC 59.788 42.308 0.00 0.00 0.00 1.63
247 248 6.084738 TCCCTCTGACATACTAAGGCAATAT 58.915 40.000 0.00 0.00 0.00 1.28
248 249 5.464069 TCCCTCTGACATACTAAGGCAATA 58.536 41.667 0.00 0.00 0.00 1.90
249 250 4.298626 TCCCTCTGACATACTAAGGCAAT 58.701 43.478 0.00 0.00 0.00 3.56
250 251 3.719871 TCCCTCTGACATACTAAGGCAA 58.280 45.455 0.00 0.00 0.00 4.52
251 252 3.398318 TCCCTCTGACATACTAAGGCA 57.602 47.619 0.00 0.00 0.00 4.75
252 253 4.965200 ATTCCCTCTGACATACTAAGGC 57.035 45.455 0.00 0.00 0.00 4.35
259 260 9.507329 GCAGAAAATATTATTCCCTCTGACATA 57.493 33.333 18.30 0.00 32.39 2.29
260 261 8.000709 TGCAGAAAATATTATTCCCTCTGACAT 58.999 33.333 18.30 0.00 32.39 3.06
261 262 7.345691 TGCAGAAAATATTATTCCCTCTGACA 58.654 34.615 18.30 14.46 32.39 3.58
262 263 7.807977 TGCAGAAAATATTATTCCCTCTGAC 57.192 36.000 18.30 13.06 32.39 3.51
278 279 9.545105 ACATGAGTTGAATTTTAATGCAGAAAA 57.455 25.926 10.70 10.70 0.00 2.29
279 280 9.545105 AACATGAGTTGAATTTTAATGCAGAAA 57.455 25.926 0.00 0.00 36.39 2.52
280 281 9.195411 GAACATGAGTTGAATTTTAATGCAGAA 57.805 29.630 0.00 0.00 38.30 3.02
281 282 7.538334 CGAACATGAGTTGAATTTTAATGCAGA 59.462 33.333 0.00 0.00 38.30 4.26
282 283 7.326789 ACGAACATGAGTTGAATTTTAATGCAG 59.673 33.333 0.00 0.00 38.30 4.41
283 284 7.144661 ACGAACATGAGTTGAATTTTAATGCA 58.855 30.769 0.00 0.00 38.30 3.96
284 285 7.566858 ACGAACATGAGTTGAATTTTAATGC 57.433 32.000 0.00 0.00 38.30 3.56
289 290 9.796120 TTCTTTTACGAACATGAGTTGAATTTT 57.204 25.926 0.00 0.00 38.30 1.82
290 291 9.796120 TTTCTTTTACGAACATGAGTTGAATTT 57.204 25.926 0.00 0.00 38.30 1.82
291 292 9.796120 TTTTCTTTTACGAACATGAGTTGAATT 57.204 25.926 0.00 0.00 38.30 2.17
292 293 9.965824 ATTTTCTTTTACGAACATGAGTTGAAT 57.034 25.926 0.00 0.00 38.30 2.57
293 294 9.445786 GATTTTCTTTTACGAACATGAGTTGAA 57.554 29.630 0.00 0.00 38.30 2.69
294 295 8.616942 TGATTTTCTTTTACGAACATGAGTTGA 58.383 29.630 0.00 0.00 38.30 3.18
295 296 8.781067 TGATTTTCTTTTACGAACATGAGTTG 57.219 30.769 0.00 0.00 38.30 3.16
296 297 9.233232 GTTGATTTTCTTTTACGAACATGAGTT 57.767 29.630 0.00 0.00 41.64 3.01
297 298 8.621286 AGTTGATTTTCTTTTACGAACATGAGT 58.379 29.630 0.00 0.00 0.00 3.41
298 299 9.107367 GAGTTGATTTTCTTTTACGAACATGAG 57.893 33.333 0.00 0.00 0.00 2.90
299 300 8.616942 TGAGTTGATTTTCTTTTACGAACATGA 58.383 29.630 0.00 0.00 0.00 3.07
300 301 8.781067 TGAGTTGATTTTCTTTTACGAACATG 57.219 30.769 0.00 0.00 0.00 3.21
301 302 9.398170 CATGAGTTGATTTTCTTTTACGAACAT 57.602 29.630 0.00 0.00 0.00 2.71
302 303 8.402472 ACATGAGTTGATTTTCTTTTACGAACA 58.598 29.630 0.00 0.00 0.00 3.18
303 304 8.782533 ACATGAGTTGATTTTCTTTTACGAAC 57.217 30.769 0.00 0.00 0.00 3.95
304 305 9.796120 AAACATGAGTTGATTTTCTTTTACGAA 57.204 25.926 0.00 0.00 38.17 3.85
305 306 9.796120 AAAACATGAGTTGATTTTCTTTTACGA 57.204 25.926 0.00 0.00 38.17 3.43
336 337 9.811995 TTTCACGAGTGTAATAATAACTATGCT 57.188 29.630 2.97 0.00 0.00 3.79
344 345 9.577110 CAGTACCTTTTCACGAGTGTAATAATA 57.423 33.333 2.97 0.00 0.00 0.98
345 346 7.064253 GCAGTACCTTTTCACGAGTGTAATAAT 59.936 37.037 2.97 0.00 0.00 1.28
346 347 6.366877 GCAGTACCTTTTCACGAGTGTAATAA 59.633 38.462 2.97 0.00 0.00 1.40
347 348 5.865552 GCAGTACCTTTTCACGAGTGTAATA 59.134 40.000 2.97 0.00 0.00 0.98
348 349 4.689345 GCAGTACCTTTTCACGAGTGTAAT 59.311 41.667 2.97 0.00 0.00 1.89
349 350 4.053295 GCAGTACCTTTTCACGAGTGTAA 58.947 43.478 2.97 0.00 0.00 2.41
350 351 3.068448 TGCAGTACCTTTTCACGAGTGTA 59.932 43.478 2.97 0.00 0.00 2.90
351 352 2.159014 TGCAGTACCTTTTCACGAGTGT 60.159 45.455 2.97 0.00 0.00 3.55
352 353 2.479837 TGCAGTACCTTTTCACGAGTG 58.520 47.619 0.00 0.00 0.00 3.51
353 354 2.902705 TGCAGTACCTTTTCACGAGT 57.097 45.000 0.00 0.00 0.00 4.18
354 355 2.159653 GCATGCAGTACCTTTTCACGAG 60.160 50.000 14.21 0.00 0.00 4.18
355 356 1.804151 GCATGCAGTACCTTTTCACGA 59.196 47.619 14.21 0.00 0.00 4.35
356 357 1.535028 TGCATGCAGTACCTTTTCACG 59.465 47.619 18.46 0.00 0.00 4.35
357 358 3.191162 TGATGCATGCAGTACCTTTTCAC 59.809 43.478 26.69 5.84 0.00 3.18
358 359 3.419943 TGATGCATGCAGTACCTTTTCA 58.580 40.909 26.69 18.26 0.00 2.69
359 360 4.439305 TTGATGCATGCAGTACCTTTTC 57.561 40.909 26.69 15.83 0.00 2.29
360 361 6.239120 GGATATTGATGCATGCAGTACCTTTT 60.239 38.462 26.69 6.16 0.00 2.27
361 362 5.242393 GGATATTGATGCATGCAGTACCTTT 59.758 40.000 26.69 7.01 0.00 3.11
362 363 4.763793 GGATATTGATGCATGCAGTACCTT 59.236 41.667 26.69 7.85 0.00 3.50
363 364 4.202493 TGGATATTGATGCATGCAGTACCT 60.202 41.667 26.69 8.70 0.00 3.08
364 365 4.074259 TGGATATTGATGCATGCAGTACC 58.926 43.478 26.69 19.52 0.00 3.34
365 366 4.516321 TGTGGATATTGATGCATGCAGTAC 59.484 41.667 26.69 18.84 35.65 2.73
366 367 4.516321 GTGTGGATATTGATGCATGCAGTA 59.484 41.667 26.69 14.35 35.65 2.74
367 368 3.317149 GTGTGGATATTGATGCATGCAGT 59.683 43.478 26.69 14.02 35.65 4.40
368 369 3.316868 TGTGTGGATATTGATGCATGCAG 59.683 43.478 26.69 0.00 35.65 4.41
369 370 3.288964 TGTGTGGATATTGATGCATGCA 58.711 40.909 25.04 25.04 35.65 3.96
370 371 3.994204 TGTGTGGATATTGATGCATGC 57.006 42.857 11.82 11.82 35.65 4.06
371 372 9.483916 AAAATAATGTGTGGATATTGATGCATG 57.516 29.630 2.46 0.00 35.65 4.06
383 384 9.120538 GCCTCTTAGAATAAAATAATGTGTGGA 57.879 33.333 0.00 0.00 0.00 4.02
384 385 9.125026 AGCCTCTTAGAATAAAATAATGTGTGG 57.875 33.333 0.00 0.00 0.00 4.17
385 386 9.941664 CAGCCTCTTAGAATAAAATAATGTGTG 57.058 33.333 0.00 0.00 0.00 3.82
386 387 8.624776 GCAGCCTCTTAGAATAAAATAATGTGT 58.375 33.333 0.00 0.00 0.00 3.72
387 388 8.844244 AGCAGCCTCTTAGAATAAAATAATGTG 58.156 33.333 0.00 0.00 0.00 3.21
388 389 8.986929 AGCAGCCTCTTAGAATAAAATAATGT 57.013 30.769 0.00 0.00 0.00 2.71
421 422 9.793259 GAAATAAGGGTGTGGAATATGAGAATA 57.207 33.333 0.00 0.00 0.00 1.75
422 423 8.281531 TGAAATAAGGGTGTGGAATATGAGAAT 58.718 33.333 0.00 0.00 0.00 2.40
423 424 7.638444 TGAAATAAGGGTGTGGAATATGAGAA 58.362 34.615 0.00 0.00 0.00 2.87
424 425 7.206789 TGAAATAAGGGTGTGGAATATGAGA 57.793 36.000 0.00 0.00 0.00 3.27
425 426 7.880160 TTGAAATAAGGGTGTGGAATATGAG 57.120 36.000 0.00 0.00 0.00 2.90
426 427 7.287466 CCATTGAAATAAGGGTGTGGAATATGA 59.713 37.037 0.00 0.00 0.00 2.15
427 428 7.069826 ACCATTGAAATAAGGGTGTGGAATATG 59.930 37.037 0.00 0.00 0.00 1.78
428 429 7.069826 CACCATTGAAATAAGGGTGTGGAATAT 59.930 37.037 13.56 0.00 43.08 1.28
429 430 6.379703 CACCATTGAAATAAGGGTGTGGAATA 59.620 38.462 13.56 0.00 43.08 1.75
430 431 5.187576 CACCATTGAAATAAGGGTGTGGAAT 59.812 40.000 13.56 0.00 43.08 3.01
431 432 4.526262 CACCATTGAAATAAGGGTGTGGAA 59.474 41.667 13.56 0.00 43.08 3.53
432 433 4.085733 CACCATTGAAATAAGGGTGTGGA 58.914 43.478 13.56 0.00 43.08 4.02
433 434 3.195396 CCACCATTGAAATAAGGGTGTGG 59.805 47.826 18.46 4.08 45.85 4.17
434 435 3.195396 CCCACCATTGAAATAAGGGTGTG 59.805 47.826 18.46 7.05 45.85 3.82
435 436 3.440127 CCCACCATTGAAATAAGGGTGT 58.560 45.455 18.46 0.00 45.85 4.16
436 437 2.168313 GCCCACCATTGAAATAAGGGTG 59.832 50.000 14.53 14.53 46.63 4.61
437 438 2.225496 TGCCCACCATTGAAATAAGGGT 60.225 45.455 0.00 0.00 37.16 4.34
438 439 2.465813 TGCCCACCATTGAAATAAGGG 58.534 47.619 0.00 0.00 37.87 3.95
439 440 4.758773 AATGCCCACCATTGAAATAAGG 57.241 40.909 0.00 0.00 42.44 2.69
440 441 5.981174 AGAAATGCCCACCATTGAAATAAG 58.019 37.500 0.00 0.00 43.22 1.73
441 442 6.213195 AGAAGAAATGCCCACCATTGAAATAA 59.787 34.615 0.00 0.00 43.22 1.40
442 443 5.721000 AGAAGAAATGCCCACCATTGAAATA 59.279 36.000 0.00 0.00 43.22 1.40
443 444 4.533311 AGAAGAAATGCCCACCATTGAAAT 59.467 37.500 0.00 0.00 43.22 2.17
444 445 3.903090 AGAAGAAATGCCCACCATTGAAA 59.097 39.130 0.00 0.00 43.22 2.69
445 446 3.509442 AGAAGAAATGCCCACCATTGAA 58.491 40.909 0.00 0.00 43.22 2.69
446 447 3.091545 GAGAAGAAATGCCCACCATTGA 58.908 45.455 0.00 0.00 43.22 2.57
447 448 2.827322 TGAGAAGAAATGCCCACCATTG 59.173 45.455 0.00 0.00 43.22 2.82
448 449 2.827921 GTGAGAAGAAATGCCCACCATT 59.172 45.455 0.00 0.00 45.90 3.16
449 450 2.225091 TGTGAGAAGAAATGCCCACCAT 60.225 45.455 0.00 0.00 35.06 3.55
450 451 1.144708 TGTGAGAAGAAATGCCCACCA 59.855 47.619 0.00 0.00 0.00 4.17
451 452 1.541588 GTGTGAGAAGAAATGCCCACC 59.458 52.381 0.00 0.00 0.00 4.61
452 453 2.485814 GAGTGTGAGAAGAAATGCCCAC 59.514 50.000 0.00 0.00 0.00 4.61
453 454 2.553028 GGAGTGTGAGAAGAAATGCCCA 60.553 50.000 0.00 0.00 0.00 5.36
454 455 2.087646 GGAGTGTGAGAAGAAATGCCC 58.912 52.381 0.00 0.00 0.00 5.36
455 456 3.006247 GAGGAGTGTGAGAAGAAATGCC 58.994 50.000 0.00 0.00 0.00 4.40
456 457 3.683822 CAGAGGAGTGTGAGAAGAAATGC 59.316 47.826 0.00 0.00 0.00 3.56
457 458 3.683822 GCAGAGGAGTGTGAGAAGAAATG 59.316 47.826 0.00 0.00 0.00 2.32
458 459 3.616076 CGCAGAGGAGTGTGAGAAGAAAT 60.616 47.826 0.00 0.00 0.00 2.17
459 460 2.288457 CGCAGAGGAGTGTGAGAAGAAA 60.288 50.000 0.00 0.00 0.00 2.52
460 461 1.270826 CGCAGAGGAGTGTGAGAAGAA 59.729 52.381 0.00 0.00 0.00 2.52
461 462 0.884514 CGCAGAGGAGTGTGAGAAGA 59.115 55.000 0.00 0.00 0.00 2.87
462 463 0.108898 CCGCAGAGGAGTGTGAGAAG 60.109 60.000 0.00 0.00 45.00 2.85
463 464 0.827925 ACCGCAGAGGAGTGTGAGAA 60.828 55.000 0.00 0.00 45.00 2.87
464 465 0.037734 TACCGCAGAGGAGTGTGAGA 59.962 55.000 0.00 0.00 45.00 3.27
465 466 1.107114 ATACCGCAGAGGAGTGTGAG 58.893 55.000 0.00 0.00 45.00 3.51
466 467 0.817654 CATACCGCAGAGGAGTGTGA 59.182 55.000 0.00 0.00 45.00 3.58
467 468 0.817654 TCATACCGCAGAGGAGTGTG 59.182 55.000 0.00 0.00 45.00 3.82
468 469 1.557099 TTCATACCGCAGAGGAGTGT 58.443 50.000 0.00 0.00 45.00 3.55
469 470 2.672961 TTTCATACCGCAGAGGAGTG 57.327 50.000 0.00 0.00 45.00 3.51
470 471 2.301870 TGTTTTCATACCGCAGAGGAGT 59.698 45.455 0.00 0.00 45.00 3.85
471 472 2.673368 GTGTTTTCATACCGCAGAGGAG 59.327 50.000 0.00 0.00 45.00 3.69
472 473 2.695359 GTGTTTTCATACCGCAGAGGA 58.305 47.619 0.00 0.00 45.00 3.71
474 475 1.393539 CCGTGTTTTCATACCGCAGAG 59.606 52.381 0.00 0.00 0.00 3.35
475 476 1.270412 ACCGTGTTTTCATACCGCAGA 60.270 47.619 0.00 0.00 0.00 4.26
476 477 1.153353 ACCGTGTTTTCATACCGCAG 58.847 50.000 0.00 0.00 0.00 5.18
477 478 2.067766 GTACCGTGTTTTCATACCGCA 58.932 47.619 0.00 0.00 0.00 5.69
478 479 2.067766 TGTACCGTGTTTTCATACCGC 58.932 47.619 0.00 0.00 0.00 5.68
479 480 2.412770 GGTGTACCGTGTTTTCATACCG 59.587 50.000 0.00 0.00 0.00 4.02
480 481 2.743664 GGGTGTACCGTGTTTTCATACC 59.256 50.000 0.00 0.00 36.71 2.73
493 494 0.175073 CTCACTAAGCCGGGTGTACC 59.825 60.000 7.07 0.00 35.26 3.34
494 495 0.175073 CCTCACTAAGCCGGGTGTAC 59.825 60.000 7.07 0.00 35.26 2.90
495 496 0.251922 ACCTCACTAAGCCGGGTGTA 60.252 55.000 7.07 0.89 35.26 2.90
496 497 0.251922 TACCTCACTAAGCCGGGTGT 60.252 55.000 7.07 0.00 35.26 4.16
497 498 0.460311 CTACCTCACTAAGCCGGGTG 59.540 60.000 7.07 4.26 35.06 4.61
498 499 1.328430 GCTACCTCACTAAGCCGGGT 61.328 60.000 0.00 0.00 0.00 5.28
499 500 1.327690 TGCTACCTCACTAAGCCGGG 61.328 60.000 2.18 0.00 35.33 5.73
500 501 0.103208 CTGCTACCTCACTAAGCCGG 59.897 60.000 0.00 0.00 35.33 6.13
501 502 0.818296 ACTGCTACCTCACTAAGCCG 59.182 55.000 0.00 0.00 35.33 5.52
502 503 2.223852 GCTACTGCTACCTCACTAAGCC 60.224 54.545 0.00 0.00 35.33 4.35
503 504 2.427453 TGCTACTGCTACCTCACTAAGC 59.573 50.000 0.00 0.00 40.48 3.09
504 505 3.697045 AGTGCTACTGCTACCTCACTAAG 59.303 47.826 0.00 0.00 40.48 2.18
505 506 3.695060 GAGTGCTACTGCTACCTCACTAA 59.305 47.826 0.00 0.00 40.48 2.24
506 507 3.054287 AGAGTGCTACTGCTACCTCACTA 60.054 47.826 0.00 0.00 40.48 2.74
507 508 2.096248 GAGTGCTACTGCTACCTCACT 58.904 52.381 0.00 0.00 40.48 3.41
508 509 2.096248 AGAGTGCTACTGCTACCTCAC 58.904 52.381 0.00 0.00 40.48 3.51
509 510 2.095461 CAGAGTGCTACTGCTACCTCA 58.905 52.381 0.00 0.00 40.48 3.86
510 511 1.407258 CCAGAGTGCTACTGCTACCTC 59.593 57.143 0.00 0.00 40.48 3.85
511 512 1.006043 TCCAGAGTGCTACTGCTACCT 59.994 52.381 0.00 0.00 40.48 3.08
512 513 1.475403 TCCAGAGTGCTACTGCTACC 58.525 55.000 0.00 0.00 40.48 3.18
513 514 2.035321 GGATCCAGAGTGCTACTGCTAC 59.965 54.545 6.95 0.00 40.48 3.58
514 515 2.311463 GGATCCAGAGTGCTACTGCTA 58.689 52.381 6.95 0.00 40.48 3.49
515 516 1.118838 GGATCCAGAGTGCTACTGCT 58.881 55.000 6.95 0.00 40.48 4.24
516 517 0.105778 GGGATCCAGAGTGCTACTGC 59.894 60.000 15.23 0.00 40.20 4.40
517 518 1.489481 TGGGATCCAGAGTGCTACTG 58.511 55.000 15.23 0.00 35.43 2.74
528 529 0.925720 AATTCTGGGGCTGGGATCCA 60.926 55.000 15.23 0.00 0.00 3.41
529 530 0.178978 GAATTCTGGGGCTGGGATCC 60.179 60.000 1.92 1.92 0.00 3.36
530 531 0.552848 TGAATTCTGGGGCTGGGATC 59.447 55.000 7.05 0.00 0.00 3.36
531 532 0.259938 GTGAATTCTGGGGCTGGGAT 59.740 55.000 7.05 0.00 0.00 3.85
532 533 1.691219 GTGAATTCTGGGGCTGGGA 59.309 57.895 7.05 0.00 0.00 4.37
533 534 1.380380 GGTGAATTCTGGGGCTGGG 60.380 63.158 7.05 0.00 0.00 4.45
534 535 0.040204 AAGGTGAATTCTGGGGCTGG 59.960 55.000 7.05 0.00 0.00 4.85
535 536 1.928868 AAAGGTGAATTCTGGGGCTG 58.071 50.000 7.05 0.00 0.00 4.85
536 537 2.919602 TCTAAAGGTGAATTCTGGGGCT 59.080 45.455 7.05 0.00 0.00 5.19
537 538 3.366052 TCTAAAGGTGAATTCTGGGGC 57.634 47.619 7.05 0.00 0.00 5.80
538 539 4.860022 ACATCTAAAGGTGAATTCTGGGG 58.140 43.478 7.05 0.00 0.00 4.96
539 540 6.414732 TGTACATCTAAAGGTGAATTCTGGG 58.585 40.000 7.05 0.00 0.00 4.45
540 541 7.921786 TTGTACATCTAAAGGTGAATTCTGG 57.078 36.000 7.05 0.00 0.00 3.86
546 547 9.667107 CCTAGAAATTGTACATCTAAAGGTGAA 57.333 33.333 0.00 0.00 0.00 3.18
547 548 9.042450 TCCTAGAAATTGTACATCTAAAGGTGA 57.958 33.333 11.19 1.57 0.00 4.02
548 549 9.319143 CTCCTAGAAATTGTACATCTAAAGGTG 57.681 37.037 11.19 7.23 0.00 4.00
549 550 8.487028 CCTCCTAGAAATTGTACATCTAAAGGT 58.513 37.037 16.43 0.00 30.91 3.50
550 551 8.705594 TCCTCCTAGAAATTGTACATCTAAAGG 58.294 37.037 17.52 17.52 33.78 3.11
551 552 9.535878 GTCCTCCTAGAAATTGTACATCTAAAG 57.464 37.037 0.00 2.45 0.00 1.85
552 553 9.042450 TGTCCTCCTAGAAATTGTACATCTAAA 57.958 33.333 0.00 0.00 0.00 1.85
553 554 8.603898 TGTCCTCCTAGAAATTGTACATCTAA 57.396 34.615 0.00 0.00 0.00 2.10
554 555 8.603898 TTGTCCTCCTAGAAATTGTACATCTA 57.396 34.615 0.00 0.17 0.00 1.98
555 556 7.496346 TTGTCCTCCTAGAAATTGTACATCT 57.504 36.000 0.00 0.00 0.00 2.90
556 557 8.561738 TTTTGTCCTCCTAGAAATTGTACATC 57.438 34.615 0.00 0.00 0.00 3.06
557 558 9.533831 AATTTTGTCCTCCTAGAAATTGTACAT 57.466 29.630 0.00 0.00 31.02 2.29
558 559 8.934023 AATTTTGTCCTCCTAGAAATTGTACA 57.066 30.769 0.00 0.00 31.02 2.90
559 560 9.841880 GAAATTTTGTCCTCCTAGAAATTGTAC 57.158 33.333 0.00 0.00 32.17 2.90
560 561 9.581289 TGAAATTTTGTCCTCCTAGAAATTGTA 57.419 29.630 0.00 0.00 32.17 2.41
561 562 8.360390 GTGAAATTTTGTCCTCCTAGAAATTGT 58.640 33.333 0.00 0.00 32.17 2.71
562 563 7.538678 CGTGAAATTTTGTCCTCCTAGAAATTG 59.461 37.037 0.00 0.00 32.17 2.32
563 564 7.309194 CCGTGAAATTTTGTCCTCCTAGAAATT 60.309 37.037 0.00 0.00 32.89 1.82
564 565 6.151144 CCGTGAAATTTTGTCCTCCTAGAAAT 59.849 38.462 0.00 0.00 0.00 2.17
565 566 5.472137 CCGTGAAATTTTGTCCTCCTAGAAA 59.528 40.000 0.00 0.00 0.00 2.52
566 567 5.001232 CCGTGAAATTTTGTCCTCCTAGAA 58.999 41.667 0.00 0.00 0.00 2.10
567 568 4.041198 ACCGTGAAATTTTGTCCTCCTAGA 59.959 41.667 0.00 0.00 0.00 2.43
568 569 4.324267 ACCGTGAAATTTTGTCCTCCTAG 58.676 43.478 0.00 0.00 0.00 3.02
569 570 4.360951 ACCGTGAAATTTTGTCCTCCTA 57.639 40.909 0.00 0.00 0.00 2.94
570 571 3.223674 ACCGTGAAATTTTGTCCTCCT 57.776 42.857 0.00 0.00 0.00 3.69
571 572 5.638596 ATTACCGTGAAATTTTGTCCTCC 57.361 39.130 0.00 0.00 0.00 4.30
572 573 7.940178 AAAATTACCGTGAAATTTTGTCCTC 57.060 32.000 9.98 0.00 42.19 3.71
578 579 6.758886 TGACAGCAAAATTACCGTGAAATTTT 59.241 30.769 0.00 6.54 43.72 1.82
579 580 6.276847 TGACAGCAAAATTACCGTGAAATTT 58.723 32.000 0.00 0.00 37.98 1.82
580 581 5.837437 TGACAGCAAAATTACCGTGAAATT 58.163 33.333 0.00 0.00 0.00 1.82
581 582 5.446143 TGACAGCAAAATTACCGTGAAAT 57.554 34.783 0.00 0.00 0.00 2.17
582 583 4.902443 TGACAGCAAAATTACCGTGAAA 57.098 36.364 0.00 0.00 0.00 2.69
583 584 4.759693 AGATGACAGCAAAATTACCGTGAA 59.240 37.500 0.00 0.00 0.00 3.18
584 585 4.323417 AGATGACAGCAAAATTACCGTGA 58.677 39.130 0.00 0.00 0.00 4.35
585 586 4.685169 AGATGACAGCAAAATTACCGTG 57.315 40.909 0.00 0.00 0.00 4.94
586 587 6.597672 TCATTAGATGACAGCAAAATTACCGT 59.402 34.615 0.00 0.00 33.59 4.83
587 588 7.015226 TCATTAGATGACAGCAAAATTACCG 57.985 36.000 0.00 0.00 33.59 4.02
601 602 5.185056 TCAAACACTCCTCGTCATTAGATGA 59.815 40.000 0.00 0.00 37.45 2.92
602 603 5.289675 GTCAAACACTCCTCGTCATTAGATG 59.710 44.000 0.00 0.00 0.00 2.90
603 604 5.047306 TGTCAAACACTCCTCGTCATTAGAT 60.047 40.000 0.00 0.00 0.00 1.98
604 605 4.279922 TGTCAAACACTCCTCGTCATTAGA 59.720 41.667 0.00 0.00 0.00 2.10
605 606 4.556233 TGTCAAACACTCCTCGTCATTAG 58.444 43.478 0.00 0.00 0.00 1.73
606 607 4.594123 TGTCAAACACTCCTCGTCATTA 57.406 40.909 0.00 0.00 0.00 1.90
607 608 3.469008 TGTCAAACACTCCTCGTCATT 57.531 42.857 0.00 0.00 0.00 2.57
608 609 3.469008 TTGTCAAACACTCCTCGTCAT 57.531 42.857 0.00 0.00 0.00 3.06
609 610 2.971660 TTGTCAAACACTCCTCGTCA 57.028 45.000 0.00 0.00 0.00 4.35
610 611 4.609691 TTTTTGTCAAACACTCCTCGTC 57.390 40.909 0.00 0.00 0.00 4.20
646 648 0.892755 AGTTCTGTGGGACGCGAATA 59.107 50.000 15.93 0.00 45.01 1.75
726 728 3.248024 ACCACCATTCAGTCAACCTAGA 58.752 45.455 0.00 0.00 0.00 2.43
754 756 4.056050 ACGTCAGAATCGCTGTTAAAACT 58.944 39.130 0.00 0.00 45.14 2.66
1947 1980 6.881602 CCTACTCCTCAAGTTGCTTCTTATTT 59.118 38.462 0.00 0.00 39.55 1.40
1950 1983 4.322801 GCCTACTCCTCAAGTTGCTTCTTA 60.323 45.833 0.00 0.00 39.55 2.10
1969 2002 5.105635 CCATTTGAAGCTCAATCTTTGCCTA 60.106 40.000 0.00 0.00 36.11 3.93
2191 2224 4.141390 ACTTCACTCCTCCATCACAACTTT 60.141 41.667 0.00 0.00 0.00 2.66
2912 3267 2.321263 CTGCAGATCATCGCCCCACT 62.321 60.000 8.42 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.