Multiple sequence alignment - TraesCS1D01G228200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G228200 chr1D 100.000 9597 0 0 1 9597 316235547 316245143 0.000000e+00 17723.0
1 TraesCS1D01G228200 chr1D 89.773 176 15 2 9422 9597 470504501 470504329 1.250000e-53 222.0
2 TraesCS1D01G228200 chr1D 87.222 180 20 3 9419 9597 159928067 159928244 1.630000e-47 202.0
3 TraesCS1D01G228200 chr1D 98.000 50 1 0 4546 4595 159875068 159875019 4.770000e-13 87.9
4 TraesCS1D01G228200 chr4D 98.435 3835 57 2 4591 8423 491385322 491381489 0.000000e+00 6746.0
5 TraesCS1D01G228200 chr4D 94.686 1449 31 12 1203 2623 491389065 491387635 0.000000e+00 2207.0
6 TraesCS1D01G228200 chr4D 95.455 44 1 1 2639 2682 470162675 470162717 1.730000e-07 69.4
7 TraesCS1D01G228200 chr4D 97.561 41 0 1 2642 2682 491387132 491387093 1.730000e-07 69.4
8 TraesCS1D01G228200 chr6D 98.072 3838 65 6 4591 8426 420175044 420171214 0.000000e+00 6669.0
9 TraesCS1D01G228200 chr6D 96.486 1423 24 7 1203 2623 420179046 420177648 0.000000e+00 2327.0
10 TraesCS1D01G228200 chr6D 98.000 50 0 1 2688 2737 25738686 25738734 1.720000e-12 86.1
11 TraesCS1D01G228200 chr6D 97.619 42 0 1 2642 2683 420177145 420177105 4.810000e-08 71.3
12 TraesCS1D01G228200 chr6D 97.561 41 0 1 2642 2682 25738856 25738817 1.730000e-07 69.4
13 TraesCS1D01G228200 chr3D 98.042 3830 63 3 4595 8422 337952 334133 0.000000e+00 6647.0
14 TraesCS1D01G228200 chr3D 97.938 3832 67 4 4591 8422 468958843 468955024 0.000000e+00 6628.0
15 TraesCS1D01G228200 chr3D 98.455 1812 25 2 2736 4545 339756 337946 0.000000e+00 3188.0
16 TraesCS1D01G228200 chr3D 97.686 1815 40 2 2736 4549 388431135 388429322 0.000000e+00 3118.0
17 TraesCS1D01G228200 chr3D 95.577 1447 24 8 1203 2623 341939 340507 0.000000e+00 2281.0
18 TraesCS1D01G228200 chr3D 95.458 1431 28 10 1203 2623 468962778 468961375 0.000000e+00 2248.0
19 TraesCS1D01G228200 chr3D 94.850 1437 40 9 1200 2623 610027367 610028782 0.000000e+00 2213.0
20 TraesCS1D01G228200 chr3D 94.175 1442 48 11 1196 2623 388433304 388431885 0.000000e+00 2165.0
21 TraesCS1D01G228200 chr3D 95.758 330 8 5 1198 1523 334129 334456 2.370000e-145 527.0
22 TraesCS1D01G228200 chr3D 94.512 328 14 3 1200 1523 610062724 610062397 4.000000e-138 503.0
23 TraesCS1D01G228200 chr3D 89.937 159 15 1 9437 9595 10365039 10365196 4.540000e-48 204.0
24 TraesCS1D01G228200 chr3D 97.619 42 0 1 2642 2683 340004 339964 4.810000e-08 71.3
25 TraesCS1D01G228200 chr3D 97.619 42 0 1 2642 2683 468960872 468960832 4.810000e-08 71.3
26 TraesCS1D01G228200 chr5D 97.913 3834 72 3 4591 8422 78599107 78602934 0.000000e+00 6630.0
27 TraesCS1D01G228200 chr5D 97.186 3838 66 13 4591 8422 552025244 552029045 0.000000e+00 6451.0
28 TraesCS1D01G228200 chr5D 98.314 2966 48 2 4591 7555 333092946 333089982 0.000000e+00 5199.0
29 TraesCS1D01G228200 chr5D 98.844 1817 16 4 2736 4549 333094755 333092941 0.000000e+00 3234.0
30 TraesCS1D01G228200 chr5D 98.459 1817 22 3 2736 4549 78597299 78599112 0.000000e+00 3195.0
31 TraesCS1D01G228200 chr5D 98.075 1818 23 6 2736 4549 555419112 555417303 0.000000e+00 3153.0
32 TraesCS1D01G228200 chr5D 98.238 1759 28 3 4591 6347 555417308 555415551 0.000000e+00 3073.0
33 TraesCS1D01G228200 chr5D 96.561 1425 31 6 1202 2623 555421272 555419863 0.000000e+00 2344.0
34 TraesCS1D01G228200 chr5D 96.503 1430 25 6 1203 2623 552001663 552003076 0.000000e+00 2340.0
35 TraesCS1D01G228200 chr5D 95.228 1425 34 12 1203 2623 78595158 78596552 0.000000e+00 2224.0
36 TraesCS1D01G228200 chr5D 93.650 1433 60 13 1203 2623 27883434 27882021 0.000000e+00 2113.0
37 TraesCS1D01G228200 chr5D 88.000 175 17 4 9424 9597 343298538 343298367 4.540000e-48 204.0
38 TraesCS1D01G228200 chr5D 100.000 53 0 0 2736 2788 52368856 52368908 2.210000e-16 99.0
39 TraesCS1D01G228200 chr5D 100.000 53 0 0 2736 2788 356113861 356113913 2.210000e-16 99.0
40 TraesCS1D01G228200 chr5D 100.000 53 0 0 2736 2788 422801463 422801411 2.210000e-16 99.0
41 TraesCS1D01G228200 chr7D 97.939 3833 65 5 4592 8422 531063907 531067727 0.000000e+00 6628.0
42 TraesCS1D01G228200 chr7D 97.576 3837 69 8 4591 8422 586694873 586698690 0.000000e+00 6549.0
43 TraesCS1D01G228200 chr7D 98.625 1818 21 3 2736 4549 586693061 586694878 0.000000e+00 3216.0
44 TraesCS1D01G228200 chr7D 98.509 1811 24 2 2736 4544 531062096 531063905 0.000000e+00 3192.0
45 TraesCS1D01G228200 chr7D 95.767 1441 26 8 1202 2623 586690886 586692310 0.000000e+00 2290.0
46 TraesCS1D01G228200 chr7D 87.845 181 17 5 9419 9597 184490833 184491010 3.510000e-49 207.0
47 TraesCS1D01G228200 chr7D 94.737 57 3 0 4536 4592 83660865 83660921 1.330000e-13 89.8
48 TraesCS1D01G228200 chr7D 95.000 40 2 0 9060 9099 212881197 212881236 8.050000e-06 63.9
49 TraesCS1D01G228200 chr2D 97.733 3838 72 3 4591 8423 130075307 130079134 0.000000e+00 6591.0
50 TraesCS1D01G228200 chr2D 98.258 3214 52 3 5211 8422 617343956 617340745 0.000000e+00 5622.0
51 TraesCS1D01G228200 chr2D 98.405 1818 25 3 2736 4549 130073495 130075312 0.000000e+00 3193.0
52 TraesCS1D01G228200 chr2D 96.304 1434 24 8 1201 2623 130071329 130072744 0.000000e+00 2327.0
53 TraesCS1D01G228200 chr2D 95.806 763 19 5 1203 1952 617385335 617384573 0.000000e+00 1219.0
54 TraesCS1D01G228200 chr2D 95.356 323 12 3 1203 1523 130079133 130078812 2.390000e-140 510.0
55 TraesCS1D01G228200 chr2D 93.333 60 3 1 2688 2747 617383274 617383332 4.770000e-13 87.9
56 TraesCS1D01G228200 chr2D 97.619 42 0 1 2642 2683 617383444 617383404 4.810000e-08 71.3
57 TraesCS1D01G228200 chr1A 95.228 3877 106 15 4591 8422 77267208 77263366 0.000000e+00 6061.0
58 TraesCS1D01G228200 chr1A 94.450 1910 59 9 4591 6464 405511750 405513648 0.000000e+00 2896.0
59 TraesCS1D01G228200 chr1A 93.806 1227 33 14 1 1202 397083322 397084530 0.000000e+00 1805.0
60 TraesCS1D01G228200 chr1A 93.103 348 18 4 8706 9047 397084835 397085182 1.110000e-138 505.0
61 TraesCS1D01G228200 chr1A 96.091 307 9 3 8423 8728 397084522 397084826 1.860000e-136 497.0
62 TraesCS1D01G228200 chr1A 93.865 326 18 2 1199 1522 77263362 77263687 3.110000e-134 490.0
63 TraesCS1D01G228200 chr1A 95.390 282 11 2 9111 9391 397086913 397087193 1.900000e-121 448.0
64 TraesCS1D01G228200 chr1A 93.939 66 4 0 9045 9110 397085427 397085492 6.130000e-17 100.0
65 TraesCS1D01G228200 chr1A 91.429 70 5 1 9383 9452 397087378 397087446 2.850000e-15 95.3
66 TraesCS1D01G228200 chr1A 98.000 50 0 1 2688 2737 25265355 25265307 1.720000e-12 86.1
67 TraesCS1D01G228200 chr1A 98.000 50 0 1 2688 2737 77269031 77269079 1.720000e-12 86.1
68 TraesCS1D01G228200 chr1A 98.000 50 0 1 2688 2737 405509949 405509901 1.720000e-12 86.1
69 TraesCS1D01G228200 chr1A 98.000 50 0 1 2688 2737 518277319 518277367 1.720000e-12 86.1
70 TraesCS1D01G228200 chr1A 98.000 50 0 1 2688 2737 542188841 542188793 1.720000e-12 86.1
71 TraesCS1D01G228200 chr1A 97.826 46 1 0 9065 9110 397085300 397085345 7.990000e-11 80.5
72 TraesCS1D01G228200 chr1A 97.561 41 0 1 2642 2682 77269201 77269162 1.730000e-07 69.4
73 TraesCS1D01G228200 chr6A 94.894 3878 125 16 4591 8423 587982976 587986825 0.000000e+00 5997.0
74 TraesCS1D01G228200 chr6A 98.000 50 0 1 2688 2737 587981154 587981106 1.720000e-12 86.1
75 TraesCS1D01G228200 chr6A 95.455 44 1 1 2639 2682 587980981 587981023 1.730000e-07 69.4
76 TraesCS1D01G228200 chr5A 94.939 3853 110 16 4591 8422 417909567 417905779 0.000000e+00 5956.0
77 TraesCS1D01G228200 chr5A 91.667 60 4 1 2688 2747 540619519 540619461 2.220000e-11 82.4
78 TraesCS1D01G228200 chr2A 97.185 1812 48 2 2736 4545 695266715 695264905 0.000000e+00 3061.0
79 TraesCS1D01G228200 chr2A 93.333 330 15 5 1199 1523 695187987 695188314 1.870000e-131 481.0
80 TraesCS1D01G228200 chr4A 94.515 1422 61 5 1203 2623 731619584 731620989 0.000000e+00 2178.0
81 TraesCS1D01G228200 chr4A 94.819 1023 48 4 1203 2222 478249416 478248396 0.000000e+00 1591.0
82 TraesCS1D01G228200 chr4A 92.424 330 19 6 1198 1523 731637353 731637026 5.250000e-127 466.0
83 TraesCS1D01G228200 chr4A 88.571 175 16 4 9424 9597 736316780 736316609 9.770000e-50 209.0
84 TraesCS1D01G228200 chr4A 87.709 179 16 6 9420 9597 4190445 4190272 4.540000e-48 204.0
85 TraesCS1D01G228200 chr1B 94.729 664 13 9 1 658 428607998 428608645 0.000000e+00 1013.0
86 TraesCS1D01G228200 chr1B 94.326 564 16 3 655 1202 428615717 428616280 0.000000e+00 850.0
87 TraesCS1D01G228200 chr1B 96.928 293 8 1 8423 8715 428616272 428616563 3.110000e-134 490.0
88 TraesCS1D01G228200 chr3A 88.333 180 12 9 9419 9597 13336606 13336777 3.510000e-49 207.0
89 TraesCS1D01G228200 chr3A 100.000 49 0 0 4544 4592 164863140 164863092 3.690000e-14 91.6
90 TraesCS1D01G228200 chr7B 87.293 181 18 5 9419 9597 153569948 153570125 1.630000e-47 202.0
91 TraesCS1D01G228200 chrUn 100.000 47 0 0 4546 4592 93408374 93408328 4.770000e-13 87.9
92 TraesCS1D01G228200 chrUn 100.000 47 0 0 4546 4592 195875623 195875577 4.770000e-13 87.9
93 TraesCS1D01G228200 chrUn 100.000 47 0 0 4546 4592 195881413 195881367 4.770000e-13 87.9
94 TraesCS1D01G228200 chrUn 100.000 47 0 0 4546 4592 216517345 216517299 4.770000e-13 87.9
95 TraesCS1D01G228200 chrUn 100.000 47 0 0 4546 4592 389360393 389360439 4.770000e-13 87.9
96 TraesCS1D01G228200 chrUn 100.000 47 0 0 4546 4592 444245174 444245128 4.770000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G228200 chr1D 316235547 316245143 9596 False 17723.000000 17723 100.000000 1 9597 1 chr1D.!!$F2 9596
1 TraesCS1D01G228200 chr4D 491381489 491389065 7576 True 3007.466667 6746 96.894000 1203 8423 3 chr4D.!!$R1 7220
2 TraesCS1D01G228200 chr6D 420171214 420179046 7832 True 3022.433333 6669 97.392333 1203 8426 3 chr6D.!!$R2 7223
3 TraesCS1D01G228200 chr3D 334133 341939 7806 True 3046.825000 6647 97.423250 1203 8422 4 chr3D.!!$R2 7219
4 TraesCS1D01G228200 chr3D 468955024 468962778 7754 True 2982.433333 6628 97.005000 1203 8422 3 chr3D.!!$R4 7219
5 TraesCS1D01G228200 chr3D 388429322 388433304 3982 True 2641.500000 3118 95.930500 1196 4549 2 chr3D.!!$R3 3353
6 TraesCS1D01G228200 chr3D 610027367 610028782 1415 False 2213.000000 2213 94.850000 1200 2623 1 chr3D.!!$F3 1423
7 TraesCS1D01G228200 chr5D 552025244 552029045 3801 False 6451.000000 6451 97.186000 4591 8422 1 chr5D.!!$F4 3831
8 TraesCS1D01G228200 chr5D 333089982 333094755 4773 True 4216.500000 5199 98.579000 2736 7555 2 chr5D.!!$R4 4819
9 TraesCS1D01G228200 chr5D 78595158 78602934 7776 False 4016.333333 6630 97.200000 1203 8422 3 chr5D.!!$F5 7219
10 TraesCS1D01G228200 chr5D 555415551 555421272 5721 True 2856.666667 3153 97.624667 1202 6347 3 chr5D.!!$R5 5145
11 TraesCS1D01G228200 chr5D 552001663 552003076 1413 False 2340.000000 2340 96.503000 1203 2623 1 chr5D.!!$F3 1420
12 TraesCS1D01G228200 chr5D 27882021 27883434 1413 True 2113.000000 2113 93.650000 1203 2623 1 chr5D.!!$R1 1420
13 TraesCS1D01G228200 chr7D 531062096 531067727 5631 False 4910.000000 6628 98.224000 2736 8422 2 chr7D.!!$F4 5686
14 TraesCS1D01G228200 chr7D 586690886 586698690 7804 False 4018.333333 6549 97.322667 1202 8422 3 chr7D.!!$F5 7220
15 TraesCS1D01G228200 chr2D 617340745 617343956 3211 True 5622.000000 5622 98.258000 5211 8422 1 chr2D.!!$R2 3211
16 TraesCS1D01G228200 chr2D 130071329 130079134 7805 False 4037.000000 6591 97.480667 1201 8423 3 chr2D.!!$F2 7222
17 TraesCS1D01G228200 chr2D 617383404 617385335 1931 True 645.150000 1219 96.712500 1203 2683 2 chr2D.!!$R3 1480
18 TraesCS1D01G228200 chr1A 77263366 77269201 5835 True 3065.200000 6061 96.394500 2642 8422 2 chr1A.!!$R4 5780
19 TraesCS1D01G228200 chr1A 405511750 405513648 1898 False 2896.000000 2896 94.450000 4591 6464 1 chr1A.!!$F3 1873
20 TraesCS1D01G228200 chr1A 397083322 397087446 4124 False 504.400000 1805 94.512000 1 9452 7 chr1A.!!$F5 9451
21 TraesCS1D01G228200 chr6A 587980981 587986825 5844 False 3033.200000 5997 95.174500 2639 8423 2 chr6A.!!$F1 5784
22 TraesCS1D01G228200 chr5A 417905779 417909567 3788 True 5956.000000 5956 94.939000 4591 8422 1 chr5A.!!$R1 3831
23 TraesCS1D01G228200 chr2A 695264905 695266715 1810 True 3061.000000 3061 97.185000 2736 4545 1 chr2A.!!$R1 1809
24 TraesCS1D01G228200 chr4A 731619584 731620989 1405 False 2178.000000 2178 94.515000 1203 2623 1 chr4A.!!$F1 1420
25 TraesCS1D01G228200 chr4A 478248396 478249416 1020 True 1591.000000 1591 94.819000 1203 2222 1 chr4A.!!$R2 1019
26 TraesCS1D01G228200 chr1B 428607998 428608645 647 False 1013.000000 1013 94.729000 1 658 1 chr1B.!!$F1 657
27 TraesCS1D01G228200 chr1B 428615717 428616563 846 False 670.000000 850 95.627000 655 8715 2 chr1B.!!$F2 8060

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
337 338 1.009389 CGCTCACCTTCCTCAACGTC 61.009 60.000 0.00 0.0 0.00 4.34 F
623 624 1.270252 CCTGGTGTTTGAATTGGTGGC 60.270 52.381 0.00 0.0 0.00 5.01 F
1592 1640 0.106708 GCGATTCAGGCATACCTCCA 59.893 55.000 0.00 0.0 46.34 3.86 F
2710 3283 2.163412 TGTGGTTTGTGTCAAGAACTGC 59.837 45.455 1.09 0.0 0.00 4.40 F
4550 5348 0.179234 TTTGTGTGAACCTGCCGAGA 59.821 50.000 0.00 0.0 0.00 4.04 F
4552 5350 0.320683 TGTGTGAACCTGCCGAGATG 60.321 55.000 0.00 0.0 0.00 2.90 F
4655 5453 1.002134 CTGATGGTGGGCTTCCGTT 60.002 57.895 0.00 0.0 0.00 4.44 F
5869 6733 1.293924 GAGATACAGCAGCGCACAAT 58.706 50.000 11.47 0.0 0.00 2.71 F
6125 6995 2.321263 CTGCAGATCATCGCCCCACT 62.321 60.000 8.42 0.0 0.00 4.00 F
6846 7773 4.141390 ACTTCACTCCTCCATCACAACTTT 60.141 41.667 0.00 0.0 0.00 2.66 F
8390 9455 0.892755 TAGTTCTGTGGGACGCGAAT 59.107 50.000 15.93 0.0 45.01 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1223 1250 0.532115 GGACGCGAACCCCTAAACTA 59.468 55.000 15.93 0.0 0.00 2.24 R
1661 1709 2.828549 GGCGCCGACCAATCCAAT 60.829 61.111 12.58 0.0 0.00 3.16 R
2722 3295 1.003580 TGCTAAACTTGAGGCTCAGGG 59.996 52.381 27.50 20.8 0.00 4.45 R
4584 5382 0.112606 AGTCAGGTTCGGTCCAGAGA 59.887 55.000 0.00 0.0 0.00 3.10 R
5876 6740 1.137675 TCACCTCTTCTGATGCATCCG 59.862 52.381 23.67 17.6 0.00 4.18 R
6125 6995 4.457496 GGCGAGCCAGCAGTGCTA 62.457 66.667 19.26 0.0 39.69 3.49 R
6374 7286 6.656632 AACTGACAGAACTGAATCTCACTA 57.343 37.500 10.08 0.0 0.00 2.74 R
7356 8403 2.208132 TGGTGTGAACTGTGGTGTTT 57.792 45.000 0.00 0.0 0.00 2.83 R
7908 8962 2.920271 TCTCCCTCTCCTGTCTGTTCTA 59.080 50.000 0.00 0.0 0.00 2.10 R
8523 9594 0.251922 TACACCCGGCTTAGTGAGGT 60.252 55.000 14.51 0.0 37.43 3.85 R
9547 12516 0.030235 GGGTGGTGTTTTCGTTGCTC 59.970 55.000 0.00 0.0 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 2.348998 CTGCAGTGGGTGAGGGAC 59.651 66.667 5.25 0.00 0.00 4.46
284 285 3.630148 GCGTGATGCGGGTGATCG 61.630 66.667 0.00 0.00 41.69 3.69
337 338 1.009389 CGCTCACCTTCCTCAACGTC 61.009 60.000 0.00 0.00 0.00 4.34
346 347 1.956170 CCTCAACGTCACGCAGCTT 60.956 57.895 0.00 0.00 0.00 3.74
396 397 3.582647 TCCATCTACAAGAAGCAGTGGAA 59.417 43.478 0.00 0.00 32.02 3.53
523 524 4.036518 AGCTCTTCTACCCTTGATCACAT 58.963 43.478 0.00 0.00 0.00 3.21
576 577 8.197988 CTTGTAATAACCATGACAAGTACTCC 57.802 38.462 12.32 0.00 44.18 3.85
577 578 7.490657 TGTAATAACCATGACAAGTACTCCT 57.509 36.000 0.00 0.00 0.00 3.69
578 579 8.598202 TGTAATAACCATGACAAGTACTCCTA 57.402 34.615 0.00 0.00 0.00 2.94
623 624 1.270252 CCTGGTGTTTGAATTGGTGGC 60.270 52.381 0.00 0.00 0.00 5.01
626 627 2.209273 GGTGTTTGAATTGGTGGCAAC 58.791 47.619 0.00 0.00 0.00 4.17
630 631 4.923281 GTGTTTGAATTGGTGGCAACTATC 59.077 41.667 3.27 0.00 37.61 2.08
648 649 7.416817 CAACTATCATGCGTTTTGATTCCATA 58.583 34.615 2.94 0.00 35.50 2.74
658 662 6.487103 CGTTTTGATTCCATAGCCTTAAGAC 58.513 40.000 3.36 0.00 0.00 3.01
842 846 1.328680 CACGTCTGGCATGCTTGTATC 59.671 52.381 18.92 0.00 0.00 2.24
964 975 5.048364 ACAGACTGCGTCTATCTCATAATCC 60.048 44.000 1.25 0.00 41.37 3.01
1196 1222 2.736721 CAACACAACTATGGTGGTCTCG 59.263 50.000 0.00 0.00 40.54 4.04
1197 1223 1.968493 ACACAACTATGGTGGTCTCGT 59.032 47.619 0.00 0.00 40.54 4.18
1198 1224 2.029290 ACACAACTATGGTGGTCTCGTC 60.029 50.000 0.00 0.00 40.54 4.20
1199 1225 2.029380 CACAACTATGGTGGTCTCGTCA 60.029 50.000 0.00 0.00 32.65 4.35
1592 1640 0.106708 GCGATTCAGGCATACCTCCA 59.893 55.000 0.00 0.00 46.34 3.86
1838 1921 7.936496 TTTGCATGGTTAGATTCAGTTATGA 57.064 32.000 0.00 0.00 0.00 2.15
1887 1970 6.140108 GTGCATACTTTGTTGTGTAAGAAACG 59.860 38.462 0.00 0.00 0.00 3.60
2219 2303 4.880120 AGATGTTGGCACACTCTCATAATG 59.120 41.667 0.00 0.00 39.29 1.90
2220 2304 4.284829 TGTTGGCACACTCTCATAATGA 57.715 40.909 0.00 0.00 39.29 2.57
2221 2305 4.650734 TGTTGGCACACTCTCATAATGAA 58.349 39.130 0.00 0.00 39.29 2.57
2222 2306 4.455533 TGTTGGCACACTCTCATAATGAAC 59.544 41.667 0.00 0.00 39.29 3.18
2223 2307 4.558226 TGGCACACTCTCATAATGAACT 57.442 40.909 0.00 0.00 0.00 3.01
2224 2308 4.507710 TGGCACACTCTCATAATGAACTC 58.492 43.478 0.00 0.00 0.00 3.01
2225 2309 4.223700 TGGCACACTCTCATAATGAACTCT 59.776 41.667 0.00 0.00 0.00 3.24
2226 2310 4.808364 GGCACACTCTCATAATGAACTCTC 59.192 45.833 0.00 0.00 0.00 3.20
2227 2311 5.414360 GCACACTCTCATAATGAACTCTCA 58.586 41.667 0.00 0.00 35.56 3.27
2228 2312 6.047870 GCACACTCTCATAATGAACTCTCAT 58.952 40.000 0.00 0.00 44.54 2.90
2229 2313 7.205992 GCACACTCTCATAATGAACTCTCATA 58.794 38.462 0.00 0.00 41.66 2.15
2230 2314 7.708322 GCACACTCTCATAATGAACTCTCATAA 59.292 37.037 0.00 0.00 41.66 1.90
2231 2315 9.761504 CACACTCTCATAATGAACTCTCATAAT 57.238 33.333 0.00 0.00 41.66 1.28
2476 2560 8.295288 GTCTGAATTTGTTTCTGATGATGAAGT 58.705 33.333 0.00 0.00 42.20 3.01
2632 2722 3.449746 CCACCATGAGGGAGGTTTAAA 57.550 47.619 0.00 0.00 42.10 1.52
2633 2723 3.773560 CCACCATGAGGGAGGTTTAAAA 58.226 45.455 0.00 0.00 42.10 1.52
2634 2724 4.156477 CCACCATGAGGGAGGTTTAAAAA 58.844 43.478 0.00 0.00 42.10 1.94
2635 2725 4.220602 CCACCATGAGGGAGGTTTAAAAAG 59.779 45.833 0.00 0.00 42.10 2.27
2636 2726 5.076873 CACCATGAGGGAGGTTTAAAAAGA 58.923 41.667 0.00 0.00 41.15 2.52
2639 2729 6.787458 ACCATGAGGGAGGTTTAAAAAGAAAT 59.213 34.615 0.00 0.00 41.15 2.17
2640 2730 7.292356 ACCATGAGGGAGGTTTAAAAAGAAATT 59.708 33.333 0.00 0.00 41.15 1.82
2641 2731 8.156820 CCATGAGGGAGGTTTAAAAAGAAATTT 58.843 33.333 0.00 0.00 40.01 1.82
2642 2732 9.208022 CATGAGGGAGGTTTAAAAAGAAATTTC 57.792 33.333 10.33 10.33 0.00 2.17
2643 2733 7.732025 TGAGGGAGGTTTAAAAAGAAATTTCC 58.268 34.615 14.61 0.00 0.00 3.13
2644 2734 7.567250 TGAGGGAGGTTTAAAAAGAAATTTCCT 59.433 33.333 14.61 0.00 30.41 3.36
2645 2735 7.735917 AGGGAGGTTTAAAAAGAAATTTCCTG 58.264 34.615 14.61 0.00 30.41 3.86
2646 2736 7.567250 AGGGAGGTTTAAAAAGAAATTTCCTGA 59.433 33.333 14.61 0.00 30.41 3.86
2683 3256 9.847224 AATTAAGAAGACCAAGACTAAGTTTGA 57.153 29.630 0.00 0.00 0.00 2.69
2685 3258 7.971183 AAGAAGACCAAGACTAAGTTTGATC 57.029 36.000 0.00 0.00 0.00 2.92
2687 3260 7.382898 AGAAGACCAAGACTAAGTTTGATCTC 58.617 38.462 0.00 0.00 25.58 2.75
2688 3261 6.043854 AGACCAAGACTAAGTTTGATCTCC 57.956 41.667 0.00 0.00 0.00 3.71
2689 3262 5.782845 AGACCAAGACTAAGTTTGATCTCCT 59.217 40.000 0.00 0.00 0.00 3.69
2690 3263 5.799213 ACCAAGACTAAGTTTGATCTCCTG 58.201 41.667 0.00 0.00 0.00 3.86
2691 3264 5.308237 ACCAAGACTAAGTTTGATCTCCTGT 59.692 40.000 0.00 0.00 0.00 4.00
2692 3265 5.641209 CCAAGACTAAGTTTGATCTCCTGTG 59.359 44.000 0.00 0.00 0.00 3.66
2693 3266 5.413309 AGACTAAGTTTGATCTCCTGTGG 57.587 43.478 0.00 0.00 0.00 4.17
2695 3268 5.308237 AGACTAAGTTTGATCTCCTGTGGTT 59.692 40.000 0.00 0.00 0.00 3.67
2696 3269 5.941788 ACTAAGTTTGATCTCCTGTGGTTT 58.058 37.500 0.00 0.00 0.00 3.27
2697 3270 5.765182 ACTAAGTTTGATCTCCTGTGGTTTG 59.235 40.000 0.00 0.00 0.00 2.93
2698 3271 4.170468 AGTTTGATCTCCTGTGGTTTGT 57.830 40.909 0.00 0.00 0.00 2.83
2699 3272 3.885297 AGTTTGATCTCCTGTGGTTTGTG 59.115 43.478 0.00 0.00 0.00 3.33
2700 3273 3.576078 TTGATCTCCTGTGGTTTGTGT 57.424 42.857 0.00 0.00 0.00 3.72
2701 3274 3.126001 TGATCTCCTGTGGTTTGTGTC 57.874 47.619 0.00 0.00 0.00 3.67
2702 3275 2.437651 TGATCTCCTGTGGTTTGTGTCA 59.562 45.455 0.00 0.00 0.00 3.58
2703 3276 3.118075 TGATCTCCTGTGGTTTGTGTCAA 60.118 43.478 0.00 0.00 0.00 3.18
2704 3277 2.917933 TCTCCTGTGGTTTGTGTCAAG 58.082 47.619 0.00 0.00 0.00 3.02
2705 3278 2.503765 TCTCCTGTGGTTTGTGTCAAGA 59.496 45.455 0.00 0.00 0.00 3.02
2706 3279 3.054728 TCTCCTGTGGTTTGTGTCAAGAA 60.055 43.478 0.00 0.00 0.00 2.52
2708 3281 3.016736 CCTGTGGTTTGTGTCAAGAACT 58.983 45.455 1.09 0.00 0.00 3.01
2709 3282 3.181497 CCTGTGGTTTGTGTCAAGAACTG 60.181 47.826 1.09 0.00 0.00 3.16
2710 3283 2.163412 TGTGGTTTGTGTCAAGAACTGC 59.837 45.455 1.09 0.00 0.00 4.40
2712 3285 3.088532 TGGTTTGTGTCAAGAACTGCTT 58.911 40.909 0.00 0.00 37.29 3.91
2725 3298 5.707066 AGAACTGCTTGAAGATAATCCCT 57.293 39.130 0.00 0.00 0.00 4.20
2727 3300 5.190528 AGAACTGCTTGAAGATAATCCCTGA 59.809 40.000 0.00 0.00 0.00 3.86
2728 3301 5.033589 ACTGCTTGAAGATAATCCCTGAG 57.966 43.478 0.00 0.00 0.00 3.35
2729 3302 3.813443 TGCTTGAAGATAATCCCTGAGC 58.187 45.455 0.00 0.00 0.00 4.26
2730 3303 3.145286 GCTTGAAGATAATCCCTGAGCC 58.855 50.000 0.00 0.00 0.00 4.70
2732 3305 4.640364 CTTGAAGATAATCCCTGAGCCTC 58.360 47.826 0.00 0.00 0.00 4.70
2733 3306 3.657610 TGAAGATAATCCCTGAGCCTCA 58.342 45.455 0.00 0.00 0.00 3.86
3544 4296 9.487442 ACCTACTCAGAGATTTTAGAAGAGAAT 57.513 33.333 3.79 0.00 0.00 2.40
4291 5089 1.005450 CTAAAAGGGGTAGGCCTGCAA 59.995 52.381 23.21 0.00 34.45 4.08
4355 5153 3.491447 GCTGCAACTTCAGATGTTTTGGT 60.491 43.478 0.00 0.00 36.19 3.67
4362 5160 6.976934 ACTTCAGATGTTTTGGTTGGTAAT 57.023 33.333 0.00 0.00 0.00 1.89
4386 5184 1.133668 AGGAAGAGGTTTGCAAGCAGT 60.134 47.619 15.54 1.21 0.00 4.40
4545 5343 3.066621 TGTCTGAATTTGTGTGAACCTGC 59.933 43.478 0.00 0.00 0.00 4.85
4547 5345 1.336440 TGAATTTGTGTGAACCTGCCG 59.664 47.619 0.00 0.00 0.00 5.69
4548 5346 1.606668 GAATTTGTGTGAACCTGCCGA 59.393 47.619 0.00 0.00 0.00 5.54
4549 5347 1.238439 ATTTGTGTGAACCTGCCGAG 58.762 50.000 0.00 0.00 0.00 4.63
4550 5348 0.179234 TTTGTGTGAACCTGCCGAGA 59.821 50.000 0.00 0.00 0.00 4.04
4551 5349 0.396435 TTGTGTGAACCTGCCGAGAT 59.604 50.000 0.00 0.00 0.00 2.75
4552 5350 0.320683 TGTGTGAACCTGCCGAGATG 60.321 55.000 0.00 0.00 0.00 2.90
4553 5351 1.021390 GTGTGAACCTGCCGAGATGG 61.021 60.000 0.00 0.00 42.50 3.51
4567 5365 3.653344 CGAGATGGCAAATATTCGGAGA 58.347 45.455 0.00 0.00 0.00 3.71
4568 5366 4.248859 CGAGATGGCAAATATTCGGAGAT 58.751 43.478 0.00 0.00 35.04 2.75
4569 5367 4.092529 CGAGATGGCAAATATTCGGAGATG 59.907 45.833 0.00 0.00 35.04 2.90
4570 5368 5.233083 AGATGGCAAATATTCGGAGATGA 57.767 39.130 0.00 0.00 35.04 2.92
4571 5369 4.999950 AGATGGCAAATATTCGGAGATGAC 59.000 41.667 0.00 0.00 35.04 3.06
4572 5370 4.422073 TGGCAAATATTCGGAGATGACT 57.578 40.909 0.00 0.00 35.04 3.41
4573 5371 5.545063 TGGCAAATATTCGGAGATGACTA 57.455 39.130 0.00 0.00 35.04 2.59
4574 5372 6.114187 TGGCAAATATTCGGAGATGACTAT 57.886 37.500 0.00 0.00 35.04 2.12
4575 5373 5.934043 TGGCAAATATTCGGAGATGACTATG 59.066 40.000 0.00 0.00 35.04 2.23
4576 5374 6.166279 GGCAAATATTCGGAGATGACTATGA 58.834 40.000 0.00 0.00 35.04 2.15
4577 5375 6.650807 GGCAAATATTCGGAGATGACTATGAA 59.349 38.462 0.00 0.00 35.04 2.57
4578 5376 7.173218 GGCAAATATTCGGAGATGACTATGAAA 59.827 37.037 0.00 0.00 35.04 2.69
4579 5377 8.559536 GCAAATATTCGGAGATGACTATGAAAA 58.440 33.333 0.00 0.00 35.04 2.29
4580 5378 9.869844 CAAATATTCGGAGATGACTATGAAAAC 57.130 33.333 0.00 0.00 35.04 2.43
4581 5379 9.613428 AAATATTCGGAGATGACTATGAAAACA 57.387 29.630 0.00 0.00 35.04 2.83
4582 5380 6.910536 ATTCGGAGATGACTATGAAAACAC 57.089 37.500 0.00 0.00 35.04 3.32
4583 5381 4.755411 TCGGAGATGACTATGAAAACACC 58.245 43.478 0.00 0.00 0.00 4.16
4584 5382 4.466370 TCGGAGATGACTATGAAAACACCT 59.534 41.667 0.00 0.00 0.00 4.00
4585 5383 4.806247 CGGAGATGACTATGAAAACACCTC 59.194 45.833 0.00 0.00 0.00 3.85
4586 5384 5.394663 CGGAGATGACTATGAAAACACCTCT 60.395 44.000 0.00 0.00 0.00 3.69
4587 5385 6.045955 GGAGATGACTATGAAAACACCTCTC 58.954 44.000 0.00 0.00 0.00 3.20
4588 5386 6.127196 GGAGATGACTATGAAAACACCTCTCT 60.127 42.308 0.00 0.00 0.00 3.10
4589 5387 6.638610 AGATGACTATGAAAACACCTCTCTG 58.361 40.000 0.00 0.00 0.00 3.35
4655 5453 1.002134 CTGATGGTGGGCTTCCGTT 60.002 57.895 0.00 0.00 0.00 4.44
4798 5596 4.712337 ACAGTTAGGAGAGGTAGTTGATGG 59.288 45.833 0.00 0.00 0.00 3.51
5139 5961 2.754552 GTCTTGTGCTCAATATTGCCCA 59.245 45.455 10.76 7.11 32.82 5.36
5227 6058 1.980765 TGAAGGATGCAGTTCAGGAGT 59.019 47.619 5.13 0.00 0.00 3.85
5394 6243 7.081349 TGGCACAATATTTTTAAGTCTGAACG 58.919 34.615 0.00 0.00 31.92 3.95
5582 6446 3.449018 TGCAACACAACTACCACCATTTT 59.551 39.130 0.00 0.00 0.00 1.82
5808 6672 2.258726 GCTTTTTGGGTCGGCTCGT 61.259 57.895 0.00 0.00 0.00 4.18
5869 6733 1.293924 GAGATACAGCAGCGCACAAT 58.706 50.000 11.47 0.00 0.00 2.71
5876 6740 4.824166 CAGCGCACAATGGCTCGC 62.824 66.667 11.47 7.68 46.95 5.03
6125 6995 2.321263 CTGCAGATCATCGCCCCACT 62.321 60.000 8.42 0.00 0.00 4.00
6374 7286 5.539955 AGTTTATCAGGGTGTTTGCAATCTT 59.460 36.000 0.00 0.00 0.00 2.40
6846 7773 4.141390 ACTTCACTCCTCCATCACAACTTT 60.141 41.667 0.00 0.00 0.00 2.66
7068 8053 5.105635 CCATTTGAAGCTCAATCTTTGCCTA 60.106 40.000 0.00 0.00 36.11 3.93
7087 8072 4.322801 GCCTACTCCTCAAGTTGCTTCTTA 60.323 45.833 0.00 0.00 39.55 2.10
7090 8075 6.881602 CCTACTCCTCAAGTTGCTTCTTATTT 59.118 38.462 0.00 0.00 39.55 1.40
7908 8962 4.656454 ACCCTAACCCTAACCCTAGAAT 57.344 45.455 0.00 0.00 0.00 2.40
7944 8998 3.329520 GAGGGAGAGGATAGACTGAGCTA 59.670 52.174 0.00 0.00 0.00 3.32
8283 9347 4.056050 ACGTCAGAATCGCTGTTAAAACT 58.944 39.130 0.00 0.00 45.14 2.66
8311 9375 3.248024 ACCACCATTCAGTCAACCTAGA 58.752 45.455 0.00 0.00 0.00 2.43
8390 9455 0.892755 TAGTTCTGTGGGACGCGAAT 59.107 50.000 15.93 0.00 45.01 3.34
8391 9456 0.892755 AGTTCTGTGGGACGCGAATA 59.107 50.000 15.93 0.00 45.01 1.75
8523 9594 2.311463 GGATCCAGAGTGCTACTGCTA 58.689 52.381 6.95 0.00 40.48 3.49
8570 9641 0.817654 TCATACCGCAGAGGAGTGTG 59.182 55.000 0.00 0.00 45.00 3.82
8687 9758 3.068448 TGCAGTACCTTTTCACGAGTGTA 59.932 43.478 2.97 0.00 0.00 2.90
8732 9804 9.796120 AAAACATGAGTTGATTTTCTTTTACGA 57.204 25.926 0.00 0.00 38.17 3.43
8733 9805 9.796120 AAACATGAGTTGATTTTCTTTTACGAA 57.204 25.926 0.00 0.00 38.17 3.85
8814 9920 5.822519 TCAAATAAAATGGATCCGAGTGAGG 59.177 40.000 7.39 0.00 0.00 3.86
8843 9950 9.524106 GTTATTTGTAATTACTAATTGGTGGCC 57.476 33.333 23.88 0.00 34.44 5.36
8844 9951 6.532988 TTTGTAATTACTAATTGGTGGCCC 57.467 37.500 16.33 0.00 32.38 5.80
8850 9957 0.251916 CTAATTGGTGGCCCGACTCA 59.748 55.000 0.00 0.00 0.00 3.41
8856 9963 0.822121 GGTGGCCCGACTCAAACTTT 60.822 55.000 0.00 0.00 0.00 2.66
8960 10068 6.173339 CCATCTAACCTTGAAAGTGCTCTTA 58.827 40.000 0.66 0.00 33.09 2.10
8979 10087 5.733676 TCTTATGAGCAGAGCACAAATGTA 58.266 37.500 0.00 0.00 32.39 2.29
9023 10131 0.814457 GCTCTGAGATCCTCACGTGT 59.186 55.000 16.51 0.00 35.39 4.49
9035 10143 1.880675 CTCACGTGTCAGTGTAGAGGT 59.119 52.381 16.51 0.00 42.40 3.85
9040 10148 4.857588 CACGTGTCAGTGTAGAGGTTTATC 59.142 45.833 7.58 0.00 37.35 1.75
9092 10447 7.805071 GCTTGAAAAACGATCTCATATTATGGG 59.195 37.037 3.89 0.31 0.00 4.00
9099 10454 4.640647 CGATCTCATATTATGGGACGGAGA 59.359 45.833 8.41 1.33 43.74 3.71
9113 11888 8.631480 ATGGGACGGAGAAATTATTAAATACC 57.369 34.615 0.00 0.00 0.00 2.73
9137 11912 2.112691 TCTTCCCCTTTCTCTGTCCTCT 59.887 50.000 0.00 0.00 0.00 3.69
9203 11978 2.648059 CCCTTCATCCCAGAATCACAC 58.352 52.381 0.00 0.00 0.00 3.82
9233 12008 1.964933 TCACCGAACCACATGACTACA 59.035 47.619 0.00 0.00 0.00 2.74
9247 12022 4.837896 TGACTACATCATCCTCATCGTC 57.162 45.455 0.00 0.00 29.99 4.20
9269 12044 3.244491 CCACCCATCAAAAGATTTTGCCA 60.244 43.478 12.20 0.00 45.35 4.92
9313 12089 2.405172 GACAAGTTCGTCACCTTCCTC 58.595 52.381 0.00 0.00 35.88 3.71
9342 12118 4.363991 AGTGAGGAAAGATGCAAGTTCT 57.636 40.909 0.00 0.00 0.00 3.01
9349 12125 4.142293 GGAAAGATGCAAGTTCTGGATTCC 60.142 45.833 0.00 0.00 35.99 3.01
9412 12381 9.694520 CATAATATTAATCGCTTTCTCCATTCG 57.305 33.333 0.00 0.00 0.00 3.34
9421 12390 3.664107 CTTTCTCCATTCGTCCACTTGA 58.336 45.455 0.00 0.00 0.00 3.02
9436 12405 5.231357 GTCCACTTGACGAAAAATGGTTTTC 59.769 40.000 0.00 2.51 46.17 2.29
9440 12409 2.034812 TGACGAAAAATGGTTTTCCCCG 59.965 45.455 6.40 0.00 46.69 5.73
9452 12421 9.541884 AAATGGTTTTCCCCGCTTTATATATAT 57.458 29.630 0.00 0.00 39.73 0.86
9471 12440 9.806448 ATATATATAAAGCAACCATCACCACAA 57.194 29.630 0.00 0.00 0.00 3.33
9472 12441 2.888834 AAAGCAACCATCACCACAAC 57.111 45.000 0.00 0.00 0.00 3.32
9473 12442 1.774110 AAGCAACCATCACCACAACA 58.226 45.000 0.00 0.00 0.00 3.33
9474 12443 1.999648 AGCAACCATCACCACAACAT 58.000 45.000 0.00 0.00 0.00 2.71
9475 12444 1.888512 AGCAACCATCACCACAACATC 59.111 47.619 0.00 0.00 0.00 3.06
9476 12445 1.401409 GCAACCATCACCACAACATCG 60.401 52.381 0.00 0.00 0.00 3.84
9477 12446 2.150390 CAACCATCACCACAACATCGA 58.850 47.619 0.00 0.00 0.00 3.59
9478 12447 2.099141 ACCATCACCACAACATCGAG 57.901 50.000 0.00 0.00 0.00 4.04
9479 12448 0.729116 CCATCACCACAACATCGAGC 59.271 55.000 0.00 0.00 0.00 5.03
9480 12449 1.441738 CATCACCACAACATCGAGCA 58.558 50.000 0.00 0.00 0.00 4.26
9481 12450 1.805943 CATCACCACAACATCGAGCAA 59.194 47.619 0.00 0.00 0.00 3.91
9482 12451 1.511850 TCACCACAACATCGAGCAAG 58.488 50.000 0.00 0.00 0.00 4.01
9483 12452 1.069978 TCACCACAACATCGAGCAAGA 59.930 47.619 0.00 0.00 0.00 3.02
9484 12453 1.872952 CACCACAACATCGAGCAAGAA 59.127 47.619 0.00 0.00 0.00 2.52
9485 12454 2.096069 CACCACAACATCGAGCAAGAAG 60.096 50.000 0.00 0.00 0.00 2.85
9486 12455 1.466167 CCACAACATCGAGCAAGAAGG 59.534 52.381 0.00 0.00 0.00 3.46
9487 12456 2.146342 CACAACATCGAGCAAGAAGGT 58.854 47.619 0.00 0.00 0.00 3.50
9488 12457 3.325870 CACAACATCGAGCAAGAAGGTA 58.674 45.455 0.00 0.00 0.00 3.08
9489 12458 3.123621 CACAACATCGAGCAAGAAGGTAC 59.876 47.826 0.00 0.00 0.00 3.34
9490 12459 3.244078 ACAACATCGAGCAAGAAGGTACA 60.244 43.478 0.00 0.00 0.00 2.90
9491 12460 3.678056 ACATCGAGCAAGAAGGTACAA 57.322 42.857 0.00 0.00 0.00 2.41
9492 12461 4.002906 ACATCGAGCAAGAAGGTACAAA 57.997 40.909 0.00 0.00 0.00 2.83
9493 12462 3.746492 ACATCGAGCAAGAAGGTACAAAC 59.254 43.478 0.00 0.00 0.00 2.93
9494 12463 2.400399 TCGAGCAAGAAGGTACAAACG 58.600 47.619 0.00 0.00 0.00 3.60
9495 12464 1.136336 CGAGCAAGAAGGTACAAACGC 60.136 52.381 0.00 0.00 0.00 4.84
9496 12465 1.871039 GAGCAAGAAGGTACAAACGCA 59.129 47.619 0.00 0.00 0.00 5.24
9497 12466 2.484264 GAGCAAGAAGGTACAAACGCAT 59.516 45.455 0.00 0.00 0.00 4.73
9498 12467 2.226437 AGCAAGAAGGTACAAACGCATG 59.774 45.455 0.00 0.00 0.00 4.06
9499 12468 2.031157 GCAAGAAGGTACAAACGCATGT 60.031 45.455 0.00 0.00 37.32 3.21
9500 12469 3.810373 CAAGAAGGTACAAACGCATGTC 58.190 45.455 0.00 0.00 34.75 3.06
9501 12470 3.120321 AGAAGGTACAAACGCATGTCA 57.880 42.857 0.00 0.00 34.75 3.58
9502 12471 3.674997 AGAAGGTACAAACGCATGTCAT 58.325 40.909 0.00 0.00 34.75 3.06
9503 12472 3.684788 AGAAGGTACAAACGCATGTCATC 59.315 43.478 0.00 0.00 34.75 2.92
9504 12473 3.052455 AGGTACAAACGCATGTCATCA 57.948 42.857 0.00 0.00 34.75 3.07
9505 12474 3.609853 AGGTACAAACGCATGTCATCAT 58.390 40.909 0.00 0.00 34.75 2.45
9506 12475 3.623060 AGGTACAAACGCATGTCATCATC 59.377 43.478 0.00 0.00 34.75 2.92
9507 12476 2.811902 ACAAACGCATGTCATCATCG 57.188 45.000 0.00 0.00 33.92 3.84
9508 12477 2.076100 ACAAACGCATGTCATCATCGT 58.924 42.857 0.00 0.00 38.43 3.73
9509 12478 3.258228 ACAAACGCATGTCATCATCGTA 58.742 40.909 0.00 0.00 37.09 3.43
9510 12479 3.062099 ACAAACGCATGTCATCATCGTAC 59.938 43.478 0.00 0.00 37.09 3.67
9511 12480 2.871182 ACGCATGTCATCATCGTACT 57.129 45.000 0.00 0.00 36.69 2.73
9512 12481 2.732366 ACGCATGTCATCATCGTACTC 58.268 47.619 0.00 0.00 36.69 2.59
9513 12482 2.099098 ACGCATGTCATCATCGTACTCA 59.901 45.455 0.00 0.00 36.69 3.41
9514 12483 3.115554 CGCATGTCATCATCGTACTCAA 58.884 45.455 0.00 0.00 31.15 3.02
9515 12484 3.060940 CGCATGTCATCATCGTACTCAAC 60.061 47.826 0.00 0.00 31.15 3.18
9525 12494 0.713883 CGTACTCAACGCACACATCC 59.286 55.000 0.00 0.00 46.10 3.51
9526 12495 1.790755 GTACTCAACGCACACATCCA 58.209 50.000 0.00 0.00 0.00 3.41
9527 12496 2.139917 GTACTCAACGCACACATCCAA 58.860 47.619 0.00 0.00 0.00 3.53
9528 12497 1.229428 ACTCAACGCACACATCCAAG 58.771 50.000 0.00 0.00 0.00 3.61
9529 12498 0.518636 CTCAACGCACACATCCAAGG 59.481 55.000 0.00 0.00 0.00 3.61
9530 12499 1.081242 CAACGCACACATCCAAGGC 60.081 57.895 0.00 0.00 0.00 4.35
9533 12502 3.181367 GCACACATCCAAGGCGAG 58.819 61.111 0.00 0.00 0.00 5.03
9534 12503 1.375908 GCACACATCCAAGGCGAGA 60.376 57.895 0.00 0.00 0.00 4.04
9535 12504 0.745845 GCACACATCCAAGGCGAGAT 60.746 55.000 0.00 0.00 0.00 2.75
9536 12505 1.473257 GCACACATCCAAGGCGAGATA 60.473 52.381 0.00 0.00 0.00 1.98
9537 12506 2.205074 CACACATCCAAGGCGAGATAC 58.795 52.381 0.00 0.00 0.00 2.24
9538 12507 1.831106 ACACATCCAAGGCGAGATACA 59.169 47.619 0.00 0.00 0.00 2.29
9539 12508 2.236146 ACACATCCAAGGCGAGATACAA 59.764 45.455 0.00 0.00 0.00 2.41
9540 12509 3.270027 CACATCCAAGGCGAGATACAAA 58.730 45.455 0.00 0.00 0.00 2.83
9541 12510 3.310774 CACATCCAAGGCGAGATACAAAG 59.689 47.826 0.00 0.00 0.00 2.77
9542 12511 2.691409 TCCAAGGCGAGATACAAAGG 57.309 50.000 0.00 0.00 0.00 3.11
9543 12512 1.906574 TCCAAGGCGAGATACAAAGGT 59.093 47.619 0.00 0.00 0.00 3.50
9544 12513 2.009774 CCAAGGCGAGATACAAAGGTG 58.990 52.381 0.00 0.00 0.00 4.00
9545 12514 1.398390 CAAGGCGAGATACAAAGGTGC 59.602 52.381 0.00 0.00 0.00 5.01
9546 12515 0.107654 AGGCGAGATACAAAGGTGCC 60.108 55.000 0.00 0.00 41.27 5.01
9547 12516 1.429148 GGCGAGATACAAAGGTGCCG 61.429 60.000 0.00 0.00 0.00 5.69
9548 12517 0.459585 GCGAGATACAAAGGTGCCGA 60.460 55.000 0.00 0.00 0.00 5.54
9549 12518 1.560923 CGAGATACAAAGGTGCCGAG 58.439 55.000 0.00 0.00 0.00 4.63
9550 12519 1.291132 GAGATACAAAGGTGCCGAGC 58.709 55.000 0.00 0.00 0.00 5.03
9551 12520 0.613260 AGATACAAAGGTGCCGAGCA 59.387 50.000 0.00 0.00 35.60 4.26
9552 12521 1.003118 AGATACAAAGGTGCCGAGCAA 59.997 47.619 0.00 0.00 41.47 3.91
9558 12527 3.027292 GGTGCCGAGCAACGAAAA 58.973 55.556 4.96 0.00 45.77 2.29
9559 12528 1.370051 GGTGCCGAGCAACGAAAAC 60.370 57.895 4.96 1.10 45.77 2.43
9560 12529 1.353804 GTGCCGAGCAACGAAAACA 59.646 52.632 4.96 0.00 45.77 2.83
9561 12530 0.928451 GTGCCGAGCAACGAAAACAC 60.928 55.000 4.96 4.60 45.77 3.32
9562 12531 1.370051 GCCGAGCAACGAAAACACC 60.370 57.895 4.96 0.00 45.77 4.16
9563 12532 2.018544 CCGAGCAACGAAAACACCA 58.981 52.632 4.96 0.00 45.77 4.17
9564 12533 0.316689 CCGAGCAACGAAAACACCAC 60.317 55.000 4.96 0.00 45.77 4.16
9565 12534 0.316689 CGAGCAACGAAAACACCACC 60.317 55.000 0.00 0.00 45.77 4.61
9566 12535 0.030235 GAGCAACGAAAACACCACCC 59.970 55.000 0.00 0.00 0.00 4.61
9567 12536 1.066752 GCAACGAAAACACCACCCC 59.933 57.895 0.00 0.00 0.00 4.95
9568 12537 1.668101 GCAACGAAAACACCACCCCA 61.668 55.000 0.00 0.00 0.00 4.96
9569 12538 0.818296 CAACGAAAACACCACCCCAA 59.182 50.000 0.00 0.00 0.00 4.12
9570 12539 0.818938 AACGAAAACACCACCCCAAC 59.181 50.000 0.00 0.00 0.00 3.77
9571 12540 0.323542 ACGAAAACACCACCCCAACA 60.324 50.000 0.00 0.00 0.00 3.33
9572 12541 0.818296 CGAAAACACCACCCCAACAA 59.182 50.000 0.00 0.00 0.00 2.83
9573 12542 1.470112 CGAAAACACCACCCCAACAAC 60.470 52.381 0.00 0.00 0.00 3.32
9574 12543 0.533032 AAAACACCACCCCAACAACG 59.467 50.000 0.00 0.00 0.00 4.10
9575 12544 0.323542 AAACACCACCCCAACAACGA 60.324 50.000 0.00 0.00 0.00 3.85
9576 12545 1.033202 AACACCACCCCAACAACGAC 61.033 55.000 0.00 0.00 0.00 4.34
9577 12546 1.452289 CACCACCCCAACAACGACA 60.452 57.895 0.00 0.00 0.00 4.35
9578 12547 1.032657 CACCACCCCAACAACGACAA 61.033 55.000 0.00 0.00 0.00 3.18
9579 12548 0.323542 ACCACCCCAACAACGACAAA 60.324 50.000 0.00 0.00 0.00 2.83
9580 12549 0.383949 CCACCCCAACAACGACAAAG 59.616 55.000 0.00 0.00 0.00 2.77
9581 12550 0.248866 CACCCCAACAACGACAAAGC 60.249 55.000 0.00 0.00 0.00 3.51
9582 12551 0.681564 ACCCCAACAACGACAAAGCA 60.682 50.000 0.00 0.00 0.00 3.91
9583 12552 0.248866 CCCCAACAACGACAAAGCAC 60.249 55.000 0.00 0.00 0.00 4.40
9584 12553 0.248866 CCCAACAACGACAAAGCACC 60.249 55.000 0.00 0.00 0.00 5.01
9585 12554 0.248866 CCAACAACGACAAAGCACCC 60.249 55.000 0.00 0.00 0.00 4.61
9586 12555 0.738389 CAACAACGACAAAGCACCCT 59.262 50.000 0.00 0.00 0.00 4.34
9587 12556 1.944024 CAACAACGACAAAGCACCCTA 59.056 47.619 0.00 0.00 0.00 3.53
9588 12557 2.335316 ACAACGACAAAGCACCCTAA 57.665 45.000 0.00 0.00 0.00 2.69
9589 12558 2.858745 ACAACGACAAAGCACCCTAAT 58.141 42.857 0.00 0.00 0.00 1.73
9590 12559 2.552315 ACAACGACAAAGCACCCTAATG 59.448 45.455 0.00 0.00 0.00 1.90
9591 12560 2.811431 CAACGACAAAGCACCCTAATGA 59.189 45.455 0.00 0.00 0.00 2.57
9592 12561 3.350219 ACGACAAAGCACCCTAATGAT 57.650 42.857 0.00 0.00 0.00 2.45
9593 12562 4.481368 ACGACAAAGCACCCTAATGATA 57.519 40.909 0.00 0.00 0.00 2.15
9594 12563 4.839121 ACGACAAAGCACCCTAATGATAA 58.161 39.130 0.00 0.00 0.00 1.75
9595 12564 4.876107 ACGACAAAGCACCCTAATGATAAG 59.124 41.667 0.00 0.00 0.00 1.73
9596 12565 4.260784 CGACAAAGCACCCTAATGATAAGC 60.261 45.833 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.217743 CCGTAGGCCTCCTCGGTC 61.218 72.222 25.86 5.37 46.14 4.79
88 89 2.359107 ACCCACTGCAGCATGTCG 60.359 61.111 15.27 0.54 39.31 4.35
112 113 2.034558 GGTGGTGTTGAAGTCCATGTTG 59.965 50.000 0.00 0.00 33.68 3.33
284 285 3.607661 GCCGTCGAGGATCTCCCC 61.608 72.222 6.70 0.00 45.00 4.81
325 326 1.891060 GCTGCGTGACGTTGAGGAAG 61.891 60.000 6.91 0.00 0.00 3.46
337 338 0.447801 GGTACATGGAAAGCTGCGTG 59.552 55.000 0.00 0.00 36.07 5.34
377 378 3.307762 GGGTTCCACTGCTTCTTGTAGAT 60.308 47.826 0.00 0.00 32.51 1.98
541 542 8.789762 GTCATGGTTATTACAAGTTTACAACCT 58.210 33.333 0.00 0.00 35.93 3.50
542 543 8.569641 TGTCATGGTTATTACAAGTTTACAACC 58.430 33.333 0.00 0.00 35.58 3.77
543 544 9.953697 TTGTCATGGTTATTACAAGTTTACAAC 57.046 29.630 0.00 0.00 29.55 3.32
551 552 8.041323 AGGAGTACTTGTCATGGTTATTACAAG 58.959 37.037 16.84 16.84 46.56 3.16
556 557 9.656323 TCTATAGGAGTACTTGTCATGGTTATT 57.344 33.333 0.00 0.00 0.00 1.40
573 574 2.356330 CGGGAGGCCTACTCTATAGGAG 60.356 59.091 16.60 0.00 45.83 3.69
574 575 1.634459 CGGGAGGCCTACTCTATAGGA 59.366 57.143 16.60 0.00 45.83 2.94
575 576 1.634459 TCGGGAGGCCTACTCTATAGG 59.366 57.143 16.60 0.00 45.83 2.57
576 577 2.306512 ACTCGGGAGGCCTACTCTATAG 59.693 54.545 16.60 7.89 45.83 1.31
577 578 2.346529 ACTCGGGAGGCCTACTCTATA 58.653 52.381 16.60 0.00 45.83 1.31
578 579 1.150872 ACTCGGGAGGCCTACTCTAT 58.849 55.000 16.60 0.00 45.83 1.98
623 624 5.639757 TGGAATCAAAACGCATGATAGTTG 58.360 37.500 0.00 0.00 36.53 3.16
626 627 6.082338 GCTATGGAATCAAAACGCATGATAG 58.918 40.000 0.00 0.00 36.53 2.08
630 631 3.067180 AGGCTATGGAATCAAAACGCATG 59.933 43.478 0.00 0.00 0.00 4.06
658 662 0.099436 GCCTATTCTGTTTGGCAGCG 59.901 55.000 0.00 0.00 44.66 5.18
869 873 5.741388 AGGTCGAATTAAGTACGTACGAT 57.259 39.130 24.41 14.84 0.00 3.73
886 890 9.932207 CTCAGTATATATAGAGGGTATAGGTCG 57.068 40.741 0.00 0.00 0.00 4.79
964 975 2.974935 TTTCGACGAACGGTGTGGGG 62.975 60.000 10.38 0.00 42.82 4.96
1189 1215 3.130633 CAAACACTCAATGACGAGACCA 58.869 45.455 0.00 0.00 36.47 4.02
1193 1219 4.794248 TTGTCAAACACTCAATGACGAG 57.206 40.909 0.00 0.00 44.95 4.18
1194 1220 5.553290 TTTTGTCAAACACTCAATGACGA 57.447 34.783 0.00 0.00 44.95 4.20
1223 1250 0.532115 GGACGCGAACCCCTAAACTA 59.468 55.000 15.93 0.00 0.00 2.24
1331 1361 4.555348 TCGCTGTTAAAACGGTCAAAAT 57.445 36.364 3.75 0.00 37.60 1.82
1661 1709 2.828549 GGCGCCGACCAATCCAAT 60.829 61.111 12.58 0.00 0.00 3.16
1838 1921 8.522830 CACAATACTAACAATTTCCAAGGTCAT 58.477 33.333 0.00 0.00 0.00 3.06
2221 2305 9.342308 TGTTCAGAAACTTTTCATTATGAGAGT 57.658 29.630 4.58 7.27 39.61 3.24
2231 2315 9.832445 ACTACTCTTATGTTCAGAAACTTTTCA 57.168 29.630 4.58 0.00 39.61 2.69
2476 2560 3.258872 CCCATCTGAACCTGAATTTGCAA 59.741 43.478 0.00 0.00 0.00 4.08
2623 2713 9.208022 CCATCAGGAAATTTCTTTTTAAACCTC 57.792 33.333 17.42 0.00 36.89 3.85
2624 2714 8.933653 TCCATCAGGAAATTTCTTTTTAAACCT 58.066 29.630 17.42 1.03 42.23 3.50
2642 2732 8.295288 GTCTTCTTAATTAATGCATCCATCAGG 58.705 37.037 0.00 0.00 0.00 3.86
2643 2733 8.295288 GGTCTTCTTAATTAATGCATCCATCAG 58.705 37.037 0.00 0.00 0.00 2.90
2644 2734 7.779326 TGGTCTTCTTAATTAATGCATCCATCA 59.221 33.333 0.00 0.00 0.00 3.07
2645 2735 8.169977 TGGTCTTCTTAATTAATGCATCCATC 57.830 34.615 0.00 0.00 0.00 3.51
2646 2736 8.537728 TTGGTCTTCTTAATTAATGCATCCAT 57.462 30.769 0.00 0.00 0.00 3.41
2683 3256 3.136443 TCTTGACACAAACCACAGGAGAT 59.864 43.478 0.00 0.00 0.00 2.75
2684 3257 2.503765 TCTTGACACAAACCACAGGAGA 59.496 45.455 0.00 0.00 0.00 3.71
2685 3258 2.917933 TCTTGACACAAACCACAGGAG 58.082 47.619 0.00 0.00 0.00 3.69
2687 3260 3.016736 AGTTCTTGACACAAACCACAGG 58.983 45.455 0.00 0.00 0.00 4.00
2688 3261 3.731867 GCAGTTCTTGACACAAACCACAG 60.732 47.826 0.00 0.00 0.00 3.66
2689 3262 2.163412 GCAGTTCTTGACACAAACCACA 59.837 45.455 0.00 0.00 0.00 4.17
2690 3263 2.423538 AGCAGTTCTTGACACAAACCAC 59.576 45.455 0.00 0.00 0.00 4.16
2691 3264 2.722094 AGCAGTTCTTGACACAAACCA 58.278 42.857 0.00 0.00 0.00 3.67
2692 3265 3.782889 AAGCAGTTCTTGACACAAACC 57.217 42.857 0.00 0.00 32.79 3.27
2702 3275 5.884792 CAGGGATTATCTTCAAGCAGTTCTT 59.115 40.000 0.00 0.00 34.78 2.52
2703 3276 5.190528 TCAGGGATTATCTTCAAGCAGTTCT 59.809 40.000 0.00 0.00 0.00 3.01
2704 3277 5.431765 TCAGGGATTATCTTCAAGCAGTTC 58.568 41.667 0.00 0.00 0.00 3.01
2705 3278 5.435291 CTCAGGGATTATCTTCAAGCAGTT 58.565 41.667 0.00 0.00 0.00 3.16
2706 3279 4.685575 GCTCAGGGATTATCTTCAAGCAGT 60.686 45.833 0.00 0.00 0.00 4.40
2708 3281 3.434167 GGCTCAGGGATTATCTTCAAGCA 60.434 47.826 10.43 0.00 0.00 3.91
2709 3282 3.145286 GGCTCAGGGATTATCTTCAAGC 58.855 50.000 0.00 0.00 0.00 4.01
2710 3283 4.102210 TGAGGCTCAGGGATTATCTTCAAG 59.898 45.833 14.43 0.00 0.00 3.02
2712 3285 3.657610 TGAGGCTCAGGGATTATCTTCA 58.342 45.455 14.43 0.00 0.00 3.02
2714 3287 4.043596 ACTTGAGGCTCAGGGATTATCTT 58.956 43.478 27.50 4.11 0.00 2.40
2715 3288 3.663198 ACTTGAGGCTCAGGGATTATCT 58.337 45.455 27.50 4.83 0.00 1.98
2716 3289 4.429854 AACTTGAGGCTCAGGGATTATC 57.570 45.455 27.50 0.00 0.00 1.75
2718 3291 4.384208 GCTAAACTTGAGGCTCAGGGATTA 60.384 45.833 27.50 22.54 0.00 1.75
2719 3292 3.623453 GCTAAACTTGAGGCTCAGGGATT 60.623 47.826 27.50 22.62 0.00 3.01
2720 3293 2.092699 GCTAAACTTGAGGCTCAGGGAT 60.093 50.000 27.50 18.48 0.00 3.85
2721 3294 1.279271 GCTAAACTTGAGGCTCAGGGA 59.721 52.381 27.50 13.25 0.00 4.20
2722 3295 1.003580 TGCTAAACTTGAGGCTCAGGG 59.996 52.381 27.50 20.80 0.00 4.45
2723 3296 2.354259 CTGCTAAACTTGAGGCTCAGG 58.646 52.381 23.40 23.40 0.00 3.86
2724 3297 1.736681 GCTGCTAAACTTGAGGCTCAG 59.263 52.381 17.91 13.87 0.00 3.35
2725 3298 1.349026 AGCTGCTAAACTTGAGGCTCA 59.651 47.619 14.43 14.43 0.00 4.26
2727 3300 2.224621 TGAAGCTGCTAAACTTGAGGCT 60.225 45.455 0.90 0.00 0.00 4.58
2728 3301 2.154462 TGAAGCTGCTAAACTTGAGGC 58.846 47.619 0.90 0.00 0.00 4.70
2729 3302 4.320788 CCTTTGAAGCTGCTAAACTTGAGG 60.321 45.833 0.90 1.22 0.00 3.86
2730 3303 4.516698 TCCTTTGAAGCTGCTAAACTTGAG 59.483 41.667 0.90 0.00 0.00 3.02
2732 3305 4.836125 TCCTTTGAAGCTGCTAAACTTG 57.164 40.909 0.90 0.00 0.00 3.16
2733 3306 4.279420 CCTTCCTTTGAAGCTGCTAAACTT 59.721 41.667 0.90 0.00 45.53 2.66
3312 4064 2.940083 GCAAACCTAGCCCAAGTAGACC 60.940 54.545 0.00 0.00 0.00 3.85
3313 4065 2.027100 AGCAAACCTAGCCCAAGTAGAC 60.027 50.000 0.00 0.00 0.00 2.59
3365 4117 8.778358 GTTGAAGACTTCACTTAGATTGTTCAT 58.222 33.333 17.52 0.00 39.87 2.57
3544 4296 5.739959 TGACAATACTTGGCATACTGCTTA 58.260 37.500 0.00 0.00 45.57 3.09
3820 4572 2.036958 TGTCTGGAGTGTTTGTGTGG 57.963 50.000 0.00 0.00 0.00 4.17
4291 5089 2.227036 CCTTGCCTGTCCCTCCACT 61.227 63.158 0.00 0.00 0.00 4.00
4301 5099 0.609957 TGCACTGAATCCCTTGCCTG 60.610 55.000 0.00 0.00 33.86 4.85
4355 5153 6.551601 TGCAAACCTCTTCCTTTTATTACCAA 59.448 34.615 0.00 0.00 0.00 3.67
4362 5160 3.957497 TGCTTGCAAACCTCTTCCTTTTA 59.043 39.130 0.00 0.00 0.00 1.52
4386 5184 6.331572 TGGCATAGAAATAACCCCTCAATCTA 59.668 38.462 0.00 0.00 0.00 1.98
4545 5343 2.738846 CTCCGAATATTTGCCATCTCGG 59.261 50.000 1.95 1.95 45.59 4.63
4547 5345 5.121454 GTCATCTCCGAATATTTGCCATCTC 59.879 44.000 0.00 0.00 0.00 2.75
4548 5346 4.999950 GTCATCTCCGAATATTTGCCATCT 59.000 41.667 0.00 0.00 0.00 2.90
4549 5347 4.999950 AGTCATCTCCGAATATTTGCCATC 59.000 41.667 0.00 0.00 0.00 3.51
4550 5348 4.978099 AGTCATCTCCGAATATTTGCCAT 58.022 39.130 0.00 0.00 0.00 4.40
4551 5349 4.422073 AGTCATCTCCGAATATTTGCCA 57.578 40.909 0.00 0.00 0.00 4.92
4552 5350 6.166279 TCATAGTCATCTCCGAATATTTGCC 58.834 40.000 0.00 0.00 0.00 4.52
4553 5351 7.658179 TTCATAGTCATCTCCGAATATTTGC 57.342 36.000 0.00 0.00 0.00 3.68
4554 5352 9.869844 GTTTTCATAGTCATCTCCGAATATTTG 57.130 33.333 0.00 0.00 0.00 2.32
4555 5353 9.613428 TGTTTTCATAGTCATCTCCGAATATTT 57.387 29.630 0.00 0.00 0.00 1.40
4556 5354 9.046296 GTGTTTTCATAGTCATCTCCGAATATT 57.954 33.333 0.00 0.00 0.00 1.28
4557 5355 7.657761 GGTGTTTTCATAGTCATCTCCGAATAT 59.342 37.037 0.00 0.00 0.00 1.28
4558 5356 6.984474 GGTGTTTTCATAGTCATCTCCGAATA 59.016 38.462 0.00 0.00 0.00 1.75
4559 5357 5.817816 GGTGTTTTCATAGTCATCTCCGAAT 59.182 40.000 0.00 0.00 0.00 3.34
4560 5358 5.046591 AGGTGTTTTCATAGTCATCTCCGAA 60.047 40.000 0.00 0.00 0.00 4.30
4561 5359 4.466370 AGGTGTTTTCATAGTCATCTCCGA 59.534 41.667 0.00 0.00 0.00 4.55
4562 5360 4.759782 AGGTGTTTTCATAGTCATCTCCG 58.240 43.478 0.00 0.00 0.00 4.63
4563 5361 5.983540 AGAGGTGTTTTCATAGTCATCTCC 58.016 41.667 0.00 0.00 38.39 3.71
4564 5362 6.756074 CAGAGAGGTGTTTTCATAGTCATCTC 59.244 42.308 0.00 0.00 38.05 2.75
4565 5363 6.351711 CCAGAGAGGTGTTTTCATAGTCATCT 60.352 42.308 0.00 0.00 0.00 2.90
4566 5364 5.814705 CCAGAGAGGTGTTTTCATAGTCATC 59.185 44.000 0.00 0.00 0.00 2.92
4567 5365 5.485353 TCCAGAGAGGTGTTTTCATAGTCAT 59.515 40.000 0.00 0.00 39.02 3.06
4568 5366 4.838423 TCCAGAGAGGTGTTTTCATAGTCA 59.162 41.667 0.00 0.00 39.02 3.41
4569 5367 5.172205 GTCCAGAGAGGTGTTTTCATAGTC 58.828 45.833 0.00 0.00 39.02 2.59
4570 5368 4.020128 GGTCCAGAGAGGTGTTTTCATAGT 60.020 45.833 0.00 0.00 39.02 2.12
4571 5369 4.508662 GGTCCAGAGAGGTGTTTTCATAG 58.491 47.826 0.00 0.00 39.02 2.23
4572 5370 3.056107 CGGTCCAGAGAGGTGTTTTCATA 60.056 47.826 0.00 0.00 39.02 2.15
4573 5371 2.289694 CGGTCCAGAGAGGTGTTTTCAT 60.290 50.000 0.00 0.00 39.02 2.57
4574 5372 1.070134 CGGTCCAGAGAGGTGTTTTCA 59.930 52.381 0.00 0.00 39.02 2.69
4575 5373 1.343465 TCGGTCCAGAGAGGTGTTTTC 59.657 52.381 0.00 0.00 39.02 2.29
4576 5374 1.420430 TCGGTCCAGAGAGGTGTTTT 58.580 50.000 0.00 0.00 39.02 2.43
4577 5375 1.070289 GTTCGGTCCAGAGAGGTGTTT 59.930 52.381 0.00 0.00 39.02 2.83
4578 5376 0.680061 GTTCGGTCCAGAGAGGTGTT 59.320 55.000 0.00 0.00 39.02 3.32
4579 5377 1.186267 GGTTCGGTCCAGAGAGGTGT 61.186 60.000 0.00 0.00 39.02 4.16
4580 5378 0.900647 AGGTTCGGTCCAGAGAGGTG 60.901 60.000 0.00 0.00 39.02 4.00
4581 5379 0.900647 CAGGTTCGGTCCAGAGAGGT 60.901 60.000 0.00 0.00 39.02 3.85
4582 5380 0.612174 TCAGGTTCGGTCCAGAGAGG 60.612 60.000 0.00 0.00 39.47 3.69
4583 5381 0.528470 GTCAGGTTCGGTCCAGAGAG 59.472 60.000 0.00 0.00 0.00 3.20
4584 5382 0.112606 AGTCAGGTTCGGTCCAGAGA 59.887 55.000 0.00 0.00 0.00 3.10
4585 5383 0.244994 CAGTCAGGTTCGGTCCAGAG 59.755 60.000 0.00 0.00 0.00 3.35
4586 5384 0.469331 ACAGTCAGGTTCGGTCCAGA 60.469 55.000 0.00 0.00 0.00 3.86
4587 5385 1.067776 GTACAGTCAGGTTCGGTCCAG 60.068 57.143 0.00 0.00 0.00 3.86
4588 5386 0.963962 GTACAGTCAGGTTCGGTCCA 59.036 55.000 0.00 0.00 0.00 4.02
4589 5387 1.254954 AGTACAGTCAGGTTCGGTCC 58.745 55.000 0.00 0.00 0.00 4.46
4655 5453 3.054576 TGGTGGGTTAGTTAGGTCCAAA 58.945 45.455 0.00 0.00 0.00 3.28
4774 5572 5.163499 CCATCAACTACCTCTCCTAACTGTC 60.163 48.000 0.00 0.00 0.00 3.51
4798 5596 1.404315 CCCTAGCAACCTCGTCTTGTC 60.404 57.143 0.00 0.00 0.00 3.18
4865 5687 3.576982 CCATAATCATGGCAGCAATCCTT 59.423 43.478 0.00 0.00 45.29 3.36
5139 5961 7.716998 TCAAAGCAAGACTAAGAACAAGATTCT 59.283 33.333 0.00 0.00 0.00 2.40
5227 6058 0.950836 CTTCATCACGGTTGGTGCAA 59.049 50.000 0.00 0.00 46.56 4.08
5394 6243 4.874966 GCAGATAGATGGATTCAGGCATAC 59.125 45.833 0.00 0.00 0.00 2.39
5582 6446 5.338381 GGGAAGTGGTAGATTGAGTGATGAA 60.338 44.000 0.00 0.00 0.00 2.57
5869 6733 4.159901 TGATGCATCCGCGAGCCA 62.160 61.111 23.67 0.00 42.97 4.75
5876 6740 1.137675 TCACCTCTTCTGATGCATCCG 59.862 52.381 23.67 17.60 0.00 4.18
6125 6995 4.457496 GGCGAGCCAGCAGTGCTA 62.457 66.667 19.26 0.00 39.69 3.49
6374 7286 6.656632 AACTGACAGAACTGAATCTCACTA 57.343 37.500 10.08 0.00 0.00 2.74
6846 7773 5.880901 AGGAAAAGCTGGACAAGATAAAGA 58.119 37.500 0.00 0.00 0.00 2.52
7068 8053 6.207614 GGAAAATAAGAAGCAACTTGAGGAGT 59.792 38.462 5.82 0.00 41.47 3.85
7087 8072 6.013984 AGGCAATCAATGAACTGAAGGAAAAT 60.014 34.615 0.54 0.00 0.00 1.82
7090 8075 4.219070 CAGGCAATCAATGAACTGAAGGAA 59.781 41.667 0.54 0.00 37.60 3.36
7356 8403 2.208132 TGGTGTGAACTGTGGTGTTT 57.792 45.000 0.00 0.00 0.00 2.83
7908 8962 2.920271 TCTCCCTCTCCTGTCTGTTCTA 59.080 50.000 0.00 0.00 0.00 2.10
7944 8998 5.865085 TGCAGATGGAGTACTTTGTAAGTT 58.135 37.500 0.00 0.00 42.81 2.66
8283 9347 3.625853 TGACTGAATGGTGGTTTTGACA 58.374 40.909 0.00 0.00 0.00 3.58
8463 9534 9.319143 CACCTTTAGATGTACAATTTCTAGGAG 57.681 37.037 15.95 12.13 0.00 3.69
8523 9594 0.251922 TACACCCGGCTTAGTGAGGT 60.252 55.000 14.51 0.00 37.43 3.85
8570 9641 3.091545 TCAATGGTGGGCATTTCTTCTC 58.908 45.455 0.00 0.00 0.00 2.87
8647 9718 3.288964 TGCATGCATCAATATCCACACA 58.711 40.909 18.46 0.00 0.00 3.72
8727 9799 9.123709 GCATTAAAATTCAACTCATGTTCGTAA 57.876 29.630 0.00 0.00 33.52 3.18
8729 9801 7.144661 TGCATTAAAATTCAACTCATGTTCGT 58.855 30.769 0.00 0.00 33.52 3.85
8731 9803 8.746922 TCTGCATTAAAATTCAACTCATGTTC 57.253 30.769 0.00 0.00 33.52 3.18
8732 9804 9.545105 TTTCTGCATTAAAATTCAACTCATGTT 57.455 25.926 0.00 0.00 36.75 2.71
8733 9805 9.545105 TTTTCTGCATTAAAATTCAACTCATGT 57.455 25.926 3.64 0.00 0.00 3.21
8769 9875 8.893219 TTTGATATTGCCTTAGTATGTCAGAG 57.107 34.615 0.00 0.00 0.00 3.35
8806 9912 9.314321 AGTAATTACAAATAACATCCTCACTCG 57.686 33.333 17.65 0.00 0.00 4.18
8897 10005 2.489329 AGCCATGAATTCAACGGACTTG 59.511 45.455 24.42 12.20 0.00 3.16
8960 10068 3.947868 AGTACATTTGTGCTCTGCTCAT 58.052 40.909 0.00 0.00 36.19 2.90
8972 10080 6.028368 ACGAGTCAGATAACGAGTACATTTG 58.972 40.000 0.00 0.00 0.00 2.32
8979 10087 5.373981 AAGAAACGAGTCAGATAACGAGT 57.626 39.130 0.00 0.00 0.00 4.18
9023 10131 8.743085 ACGTAATAGATAAACCTCTACACTGA 57.257 34.615 0.00 0.00 30.77 3.41
9059 10414 7.899178 TGAGATCGTTTTTCAAGCTATGTTA 57.101 32.000 0.00 0.00 0.00 2.41
9113 11888 3.265479 AGGACAGAGAAAGGGGAAGATTG 59.735 47.826 0.00 0.00 0.00 2.67
9119 11894 2.723530 AAGAGGACAGAGAAAGGGGA 57.276 50.000 0.00 0.00 0.00 4.81
9120 11895 3.797559 AAAAGAGGACAGAGAAAGGGG 57.202 47.619 0.00 0.00 0.00 4.79
9203 11978 0.109226 GGTTCGGTGAGAGTTCCTCG 60.109 60.000 0.00 0.00 44.92 4.63
9215 11990 2.565391 TGATGTAGTCATGTGGTTCGGT 59.435 45.455 0.00 0.00 34.06 4.69
9233 12008 1.051812 GGGTGGACGATGAGGATGAT 58.948 55.000 0.00 0.00 0.00 2.45
9269 12044 0.698818 AAGCCGGGAAAGGAATCAGT 59.301 50.000 2.18 0.00 0.00 3.41
9313 12089 4.187694 GCATCTTTCCTCACTTGTAGGAG 58.812 47.826 0.00 0.00 43.90 3.69
9342 12118 7.559897 GGACTAGAAATTTGGTAATGGAATCCA 59.440 37.037 3.67 3.67 38.19 3.41
9349 12125 9.853177 ATTAGGAGGACTAGAAATTTGGTAATG 57.147 33.333 0.00 0.00 32.16 1.90
9412 12381 3.982576 ACCATTTTTCGTCAAGTGGAC 57.017 42.857 14.65 0.00 43.36 4.02
9452 12421 3.291584 TGTTGTGGTGATGGTTGCTTTA 58.708 40.909 0.00 0.00 0.00 1.85
9453 12422 2.106566 TGTTGTGGTGATGGTTGCTTT 58.893 42.857 0.00 0.00 0.00 3.51
9454 12423 1.774110 TGTTGTGGTGATGGTTGCTT 58.226 45.000 0.00 0.00 0.00 3.91
9455 12424 1.888512 GATGTTGTGGTGATGGTTGCT 59.111 47.619 0.00 0.00 0.00 3.91
9456 12425 1.401409 CGATGTTGTGGTGATGGTTGC 60.401 52.381 0.00 0.00 0.00 4.17
9457 12426 2.150390 TCGATGTTGTGGTGATGGTTG 58.850 47.619 0.00 0.00 0.00 3.77
9458 12427 2.426522 CTCGATGTTGTGGTGATGGTT 58.573 47.619 0.00 0.00 0.00 3.67
9459 12428 1.945819 GCTCGATGTTGTGGTGATGGT 60.946 52.381 0.00 0.00 0.00 3.55
9460 12429 0.729116 GCTCGATGTTGTGGTGATGG 59.271 55.000 0.00 0.00 0.00 3.51
9461 12430 1.441738 TGCTCGATGTTGTGGTGATG 58.558 50.000 0.00 0.00 0.00 3.07
9462 12431 2.079158 CTTGCTCGATGTTGTGGTGAT 58.921 47.619 0.00 0.00 0.00 3.06
9463 12432 1.069978 TCTTGCTCGATGTTGTGGTGA 59.930 47.619 0.00 0.00 0.00 4.02
9464 12433 1.511850 TCTTGCTCGATGTTGTGGTG 58.488 50.000 0.00 0.00 0.00 4.17
9465 12434 2.146342 CTTCTTGCTCGATGTTGTGGT 58.854 47.619 0.00 0.00 0.00 4.16
9466 12435 1.466167 CCTTCTTGCTCGATGTTGTGG 59.534 52.381 0.00 0.00 0.00 4.17
9467 12436 2.146342 ACCTTCTTGCTCGATGTTGTG 58.854 47.619 0.00 0.00 0.00 3.33
9468 12437 2.550830 ACCTTCTTGCTCGATGTTGT 57.449 45.000 0.00 0.00 0.00 3.32
9469 12438 3.325870 TGTACCTTCTTGCTCGATGTTG 58.674 45.455 0.00 0.00 0.00 3.33
9470 12439 3.678056 TGTACCTTCTTGCTCGATGTT 57.322 42.857 0.00 0.00 0.00 2.71
9471 12440 3.678056 TTGTACCTTCTTGCTCGATGT 57.322 42.857 0.00 0.00 0.00 3.06
9472 12441 3.181530 CGTTTGTACCTTCTTGCTCGATG 60.182 47.826 0.00 0.00 0.00 3.84
9473 12442 2.993899 CGTTTGTACCTTCTTGCTCGAT 59.006 45.455 0.00 0.00 0.00 3.59
9474 12443 2.400399 CGTTTGTACCTTCTTGCTCGA 58.600 47.619 0.00 0.00 0.00 4.04
9475 12444 1.136336 GCGTTTGTACCTTCTTGCTCG 60.136 52.381 0.00 0.00 0.00 5.03
9476 12445 1.871039 TGCGTTTGTACCTTCTTGCTC 59.129 47.619 0.00 0.00 0.00 4.26
9477 12446 1.961793 TGCGTTTGTACCTTCTTGCT 58.038 45.000 0.00 0.00 0.00 3.91
9478 12447 2.031157 ACATGCGTTTGTACCTTCTTGC 60.031 45.455 0.00 0.00 0.00 4.01
9479 12448 3.249799 TGACATGCGTTTGTACCTTCTTG 59.750 43.478 0.00 0.00 0.00 3.02
9480 12449 3.472652 TGACATGCGTTTGTACCTTCTT 58.527 40.909 0.00 0.00 0.00 2.52
9481 12450 3.120321 TGACATGCGTTTGTACCTTCT 57.880 42.857 0.00 0.00 0.00 2.85
9482 12451 3.435327 TGATGACATGCGTTTGTACCTTC 59.565 43.478 0.00 0.00 0.00 3.46
9483 12452 3.407698 TGATGACATGCGTTTGTACCTT 58.592 40.909 0.00 0.00 0.00 3.50
9484 12453 3.052455 TGATGACATGCGTTTGTACCT 57.948 42.857 0.00 0.00 0.00 3.08
9485 12454 3.544048 CGATGATGACATGCGTTTGTACC 60.544 47.826 0.00 0.00 36.82 3.34
9486 12455 3.062099 ACGATGATGACATGCGTTTGTAC 59.938 43.478 0.00 0.00 37.15 2.90
9487 12456 3.258228 ACGATGATGACATGCGTTTGTA 58.742 40.909 0.00 0.00 37.15 2.41
9488 12457 2.076100 ACGATGATGACATGCGTTTGT 58.924 42.857 0.00 0.00 37.15 2.83
9489 12458 2.811902 ACGATGATGACATGCGTTTG 57.188 45.000 0.00 0.00 37.15 2.93
9490 12459 3.521560 AGTACGATGATGACATGCGTTT 58.478 40.909 11.33 1.54 39.21 3.60
9491 12460 3.116300 GAGTACGATGATGACATGCGTT 58.884 45.455 11.33 0.00 39.21 4.84
9492 12461 2.099098 TGAGTACGATGATGACATGCGT 59.901 45.455 10.98 10.98 40.39 5.24
9493 12462 2.731217 TGAGTACGATGATGACATGCG 58.269 47.619 0.00 0.00 36.82 4.73
9494 12463 4.443850 GTTGAGTACGATGATGACATGC 57.556 45.455 0.00 0.00 36.82 4.06
9507 12476 1.790755 TGGATGTGTGCGTTGAGTAC 58.209 50.000 0.00 0.00 35.92 2.73
9508 12477 2.412870 CTTGGATGTGTGCGTTGAGTA 58.587 47.619 0.00 0.00 0.00 2.59
9509 12478 1.229428 CTTGGATGTGTGCGTTGAGT 58.771 50.000 0.00 0.00 0.00 3.41
9510 12479 0.518636 CCTTGGATGTGTGCGTTGAG 59.481 55.000 0.00 0.00 0.00 3.02
9511 12480 1.514678 GCCTTGGATGTGTGCGTTGA 61.515 55.000 0.00 0.00 0.00 3.18
9512 12481 1.081242 GCCTTGGATGTGTGCGTTG 60.081 57.895 0.00 0.00 0.00 4.10
9513 12482 2.616330 CGCCTTGGATGTGTGCGTT 61.616 57.895 0.00 0.00 40.33 4.84
9514 12483 3.049674 CGCCTTGGATGTGTGCGT 61.050 61.111 0.00 0.00 40.33 5.24
9515 12484 2.741985 TCGCCTTGGATGTGTGCG 60.742 61.111 0.00 0.00 46.09 5.34
9516 12485 0.745845 ATCTCGCCTTGGATGTGTGC 60.746 55.000 0.00 0.00 0.00 4.57
9517 12486 2.205074 GTATCTCGCCTTGGATGTGTG 58.795 52.381 0.00 0.00 0.00 3.82
9518 12487 1.831106 TGTATCTCGCCTTGGATGTGT 59.169 47.619 0.00 0.00 0.00 3.72
9519 12488 2.602257 TGTATCTCGCCTTGGATGTG 57.398 50.000 0.00 0.00 0.00 3.21
9520 12489 3.535561 CTTTGTATCTCGCCTTGGATGT 58.464 45.455 0.00 0.00 0.00 3.06
9521 12490 2.874701 CCTTTGTATCTCGCCTTGGATG 59.125 50.000 0.00 0.00 0.00 3.51
9522 12491 2.505819 ACCTTTGTATCTCGCCTTGGAT 59.494 45.455 0.00 0.00 0.00 3.41
9523 12492 1.906574 ACCTTTGTATCTCGCCTTGGA 59.093 47.619 0.00 0.00 0.00 3.53
9524 12493 2.009774 CACCTTTGTATCTCGCCTTGG 58.990 52.381 0.00 0.00 0.00 3.61
9525 12494 1.398390 GCACCTTTGTATCTCGCCTTG 59.602 52.381 0.00 0.00 0.00 3.61
9526 12495 1.679032 GGCACCTTTGTATCTCGCCTT 60.679 52.381 0.00 0.00 35.17 4.35
9527 12496 0.107654 GGCACCTTTGTATCTCGCCT 60.108 55.000 0.00 0.00 35.17 5.52
9528 12497 1.429148 CGGCACCTTTGTATCTCGCC 61.429 60.000 0.00 0.00 34.68 5.54
9529 12498 0.459585 TCGGCACCTTTGTATCTCGC 60.460 55.000 0.00 0.00 0.00 5.03
9530 12499 1.560923 CTCGGCACCTTTGTATCTCG 58.439 55.000 0.00 0.00 0.00 4.04
9531 12500 1.291132 GCTCGGCACCTTTGTATCTC 58.709 55.000 0.00 0.00 0.00 2.75
9532 12501 0.613260 TGCTCGGCACCTTTGTATCT 59.387 50.000 0.00 0.00 31.71 1.98
9533 12502 1.130561 GTTGCTCGGCACCTTTGTATC 59.869 52.381 0.00 0.00 38.71 2.24
9534 12503 1.165270 GTTGCTCGGCACCTTTGTAT 58.835 50.000 0.00 0.00 38.71 2.29
9535 12504 1.225376 CGTTGCTCGGCACCTTTGTA 61.225 55.000 0.00 0.00 38.71 2.41
9536 12505 2.542907 CGTTGCTCGGCACCTTTGT 61.543 57.895 0.00 0.00 38.71 2.83
9537 12506 1.781025 TTCGTTGCTCGGCACCTTTG 61.781 55.000 0.00 0.00 38.71 2.77
9538 12507 1.098712 TTTCGTTGCTCGGCACCTTT 61.099 50.000 0.00 0.00 38.71 3.11
9539 12508 1.098712 TTTTCGTTGCTCGGCACCTT 61.099 50.000 0.00 0.00 38.71 3.50
9540 12509 1.525077 TTTTCGTTGCTCGGCACCT 60.525 52.632 0.00 0.00 38.71 4.00
9541 12510 1.370051 GTTTTCGTTGCTCGGCACC 60.370 57.895 0.00 0.00 38.71 5.01
9542 12511 0.928451 GTGTTTTCGTTGCTCGGCAC 60.928 55.000 0.00 0.00 38.71 5.01
9543 12512 1.353804 GTGTTTTCGTTGCTCGGCA 59.646 52.632 0.00 0.00 40.32 5.69
9544 12513 1.370051 GGTGTTTTCGTTGCTCGGC 60.370 57.895 2.56 0.00 40.32 5.54
9545 12514 0.316689 GTGGTGTTTTCGTTGCTCGG 60.317 55.000 2.56 0.00 40.32 4.63
9546 12515 0.316689 GGTGGTGTTTTCGTTGCTCG 60.317 55.000 0.00 0.00 41.41 5.03
9547 12516 0.030235 GGGTGGTGTTTTCGTTGCTC 59.970 55.000 0.00 0.00 0.00 4.26
9548 12517 1.388837 GGGGTGGTGTTTTCGTTGCT 61.389 55.000 0.00 0.00 0.00 3.91
9549 12518 1.066752 GGGGTGGTGTTTTCGTTGC 59.933 57.895 0.00 0.00 0.00 4.17
9550 12519 0.818296 TTGGGGTGGTGTTTTCGTTG 59.182 50.000 0.00 0.00 0.00 4.10
9551 12520 0.818938 GTTGGGGTGGTGTTTTCGTT 59.181 50.000 0.00 0.00 0.00 3.85
9552 12521 0.323542 TGTTGGGGTGGTGTTTTCGT 60.324 50.000 0.00 0.00 0.00 3.85
9553 12522 0.818296 TTGTTGGGGTGGTGTTTTCG 59.182 50.000 0.00 0.00 0.00 3.46
9554 12523 1.470112 CGTTGTTGGGGTGGTGTTTTC 60.470 52.381 0.00 0.00 0.00 2.29
9555 12524 0.533032 CGTTGTTGGGGTGGTGTTTT 59.467 50.000 0.00 0.00 0.00 2.43
9556 12525 0.323542 TCGTTGTTGGGGTGGTGTTT 60.324 50.000 0.00 0.00 0.00 2.83
9557 12526 1.033202 GTCGTTGTTGGGGTGGTGTT 61.033 55.000 0.00 0.00 0.00 3.32
9558 12527 1.452470 GTCGTTGTTGGGGTGGTGT 60.452 57.895 0.00 0.00 0.00 4.16
9559 12528 1.032657 TTGTCGTTGTTGGGGTGGTG 61.033 55.000 0.00 0.00 0.00 4.17
9560 12529 0.323542 TTTGTCGTTGTTGGGGTGGT 60.324 50.000 0.00 0.00 0.00 4.16
9561 12530 0.383949 CTTTGTCGTTGTTGGGGTGG 59.616 55.000 0.00 0.00 0.00 4.61
9562 12531 0.248866 GCTTTGTCGTTGTTGGGGTG 60.249 55.000 0.00 0.00 0.00 4.61
9563 12532 0.681564 TGCTTTGTCGTTGTTGGGGT 60.682 50.000 0.00 0.00 0.00 4.95
9564 12533 0.248866 GTGCTTTGTCGTTGTTGGGG 60.249 55.000 0.00 0.00 0.00 4.96
9565 12534 0.248866 GGTGCTTTGTCGTTGTTGGG 60.249 55.000 0.00 0.00 0.00 4.12
9566 12535 0.248866 GGGTGCTTTGTCGTTGTTGG 60.249 55.000 0.00 0.00 0.00 3.77
9567 12536 0.738389 AGGGTGCTTTGTCGTTGTTG 59.262 50.000 0.00 0.00 0.00 3.33
9568 12537 2.335316 TAGGGTGCTTTGTCGTTGTT 57.665 45.000 0.00 0.00 0.00 2.83
9569 12538 2.335316 TTAGGGTGCTTTGTCGTTGT 57.665 45.000 0.00 0.00 0.00 3.32
9570 12539 2.811431 TCATTAGGGTGCTTTGTCGTTG 59.189 45.455 0.00 0.00 0.00 4.10
9571 12540 3.134574 TCATTAGGGTGCTTTGTCGTT 57.865 42.857 0.00 0.00 0.00 3.85
9572 12541 2.851263 TCATTAGGGTGCTTTGTCGT 57.149 45.000 0.00 0.00 0.00 4.34
9573 12542 4.260784 GCTTATCATTAGGGTGCTTTGTCG 60.261 45.833 0.00 0.00 0.00 4.35
9574 12543 5.175090 GCTTATCATTAGGGTGCTTTGTC 57.825 43.478 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.