Multiple sequence alignment - TraesCS1D01G227800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G227800 chr1D 100.000 6426 0 0 1 6426 316005540 316011965 0.000000e+00 11867.0
1 TraesCS1D01G227800 chr1D 94.444 54 1 2 284 337 35756862 35756913 1.480000e-11 82.4
2 TraesCS1D01G227800 chr1A 94.706 3211 128 26 330 3524 396439142 396442326 0.000000e+00 4950.0
3 TraesCS1D01G227800 chr1A 95.656 1220 39 6 3520 4735 396450196 396451405 0.000000e+00 1947.0
4 TraesCS1D01G227800 chr1A 94.022 736 42 1 4732 5465 396451661 396452396 0.000000e+00 1114.0
5 TraesCS1D01G227800 chr1A 93.558 652 18 6 5796 6426 396452432 396453080 0.000000e+00 950.0
6 TraesCS1D01G227800 chr1A 89.562 297 23 6 1 292 396438851 396439144 2.830000e-98 370.0
7 TraesCS1D01G227800 chr1A 76.793 474 57 32 5995 6426 418620509 418620971 3.900000e-52 217.0
8 TraesCS1D01G227800 chr1B 93.548 1550 88 6 3901 5447 428108212 428109752 0.000000e+00 2298.0
9 TraesCS1D01G227800 chr1B 94.553 1175 40 10 2735 3904 428106935 428108090 0.000000e+00 1794.0
10 TraesCS1D01G227800 chr1B 86.538 104 9 3 5844 5944 428110139 428110240 6.810000e-20 110.0
11 TraesCS1D01G227800 chr6A 79.795 1173 171 43 1846 2973 148533123 148531972 0.000000e+00 793.0
12 TraesCS1D01G227800 chr6A 78.429 700 100 21 4177 4834 148530632 148529942 6.000000e-110 409.0
13 TraesCS1D01G227800 chr6A 79.406 539 98 8 4888 5426 148529778 148529253 1.020000e-97 368.0
14 TraesCS1D01G227800 chr6B 79.574 1175 170 45 1847 2973 215141256 215142408 0.000000e+00 776.0
15 TraesCS1D01G227800 chr6B 90.164 61 4 2 278 337 542922177 542922118 1.920000e-10 78.7
16 TraesCS1D01G227800 chr5D 97.544 285 6 1 5516 5799 450608769 450609053 2.690000e-133 486.0
17 TraesCS1D01G227800 chr5D 95.848 289 9 3 5513 5799 545532365 545532652 1.260000e-126 464.0
18 TraesCS1D01G227800 chr5D 92.857 56 2 2 286 340 312067213 312067267 5.340000e-11 80.5
19 TraesCS1D01G227800 chr5D 94.340 53 1 2 285 337 389033771 389033721 5.340000e-11 80.5
20 TraesCS1D01G227800 chr2D 96.886 289 7 2 5515 5801 590369531 590369243 3.480000e-132 483.0
21 TraesCS1D01G227800 chr2D 97.183 284 6 2 5515 5797 540821228 540821510 4.510000e-131 479.0
22 TraesCS1D01G227800 chr2D 91.667 60 3 2 278 337 454026167 454026224 1.480000e-11 82.4
23 TraesCS1D01G227800 chr5B 96.853 286 8 1 5516 5800 439263709 439263994 1.620000e-130 477.0
24 TraesCS1D01G227800 chr5B 96.140 285 11 0 5516 5800 441662732 441662448 3.510000e-127 466.0
25 TraesCS1D01G227800 chr3D 96.246 293 8 3 5513 5803 454197407 454197116 1.620000e-130 477.0
26 TraesCS1D01G227800 chr3D 94.444 306 10 6 5494 5796 608457484 608457785 1.260000e-126 464.0
27 TraesCS1D01G227800 chr3D 79.420 345 64 6 3339 3681 43008348 43008687 2.990000e-58 237.0
28 TraesCS1D01G227800 chr3D 78.202 367 73 5 3332 3697 388446719 388447079 1.800000e-55 228.0
29 TraesCS1D01G227800 chr3D 84.255 235 31 2 4593 4824 43009602 43009833 2.330000e-54 224.0
30 TraesCS1D01G227800 chr3D 77.966 236 30 13 4177 4410 43009113 43009328 1.880000e-25 128.0
31 TraesCS1D01G227800 chr4A 96.479 284 8 2 5515 5797 11842762 11843044 9.760000e-128 468.0
32 TraesCS1D01G227800 chr3A 86.207 232 26 2 4593 4821 55034567 55034795 4.980000e-61 246.0
33 TraesCS1D01G227800 chr3A 76.965 369 74 7 3332 3697 509541602 509541962 3.930000e-47 200.0
34 TraesCS1D01G227800 chr3A 84.181 177 22 5 4183 4358 55034028 55034199 3.990000e-37 167.0
35 TraesCS1D01G227800 chr3A 97.872 47 0 1 291 337 20739976 20739931 5.340000e-11 80.5
36 TraesCS1D01G227800 chr3B 77.749 382 74 7 3319 3697 505266327 505266700 2.330000e-54 224.0
37 TraesCS1D01G227800 chr3B 83.404 235 33 2 4593 4824 66876659 66876890 5.050000e-51 213.0
38 TraesCS1D01G227800 chr3B 92.982 57 2 2 283 337 723452955 723452899 1.480000e-11 82.4
39 TraesCS1D01G227800 chr7B 93.333 60 1 3 282 340 65752895 65752952 1.150000e-12 86.1
40 TraesCS1D01G227800 chr7B 92.857 56 2 2 286 340 92046769 92046823 5.340000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G227800 chr1D 316005540 316011965 6425 False 11867.000000 11867 100.000000 1 6426 1 chr1D.!!$F2 6425
1 TraesCS1D01G227800 chr1A 396438851 396442326 3475 False 2660.000000 4950 92.134000 1 3524 2 chr1A.!!$F2 3523
2 TraesCS1D01G227800 chr1A 396450196 396453080 2884 False 1337.000000 1947 94.412000 3520 6426 3 chr1A.!!$F3 2906
3 TraesCS1D01G227800 chr1B 428106935 428110240 3305 False 1400.666667 2298 91.546333 2735 5944 3 chr1B.!!$F1 3209
4 TraesCS1D01G227800 chr6A 148529253 148533123 3870 True 523.333333 793 79.210000 1846 5426 3 chr6A.!!$R1 3580
5 TraesCS1D01G227800 chr6B 215141256 215142408 1152 False 776.000000 776 79.574000 1847 2973 1 chr6B.!!$F1 1126
6 TraesCS1D01G227800 chr3A 55034028 55034795 767 False 206.500000 246 85.194000 4183 4821 2 chr3A.!!$F2 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
598 605 0.255318 CTTGCTCCAATCCTGGCTCT 59.745 55.0 0.00 0.00 43.17 4.09 F
1139 1148 0.109039 GCTGTCGAGGTTCTCTCCAC 60.109 60.0 0.00 0.00 39.30 4.02 F
1238 1247 0.958876 TCTCACTCGCCGCTCACTTA 60.959 55.0 0.00 0.00 0.00 2.24 F
3124 3202 0.179045 CCTGCATAGTAGGTGGGTGC 60.179 60.0 0.00 0.00 36.39 5.01 F
3130 3208 0.976073 TAGTAGGTGGGTGCTGGAGC 60.976 60.0 0.00 0.00 42.50 4.70 F
4467 5047 1.070821 GCGACCTTTACCGGTACAAC 58.929 55.0 15.53 3.77 37.42 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1468 1480 1.003718 AGTAGCCGAGCCCAAACAC 60.004 57.895 0.00 0.0 0.00 3.32 R
3124 3202 0.035630 CTTGTCCTTCCAGGCTCCAG 60.036 60.000 0.00 0.0 34.61 3.86 R
3129 3207 0.823356 TTGCACTTGTCCTTCCAGGC 60.823 55.000 0.00 0.0 34.61 4.85 R
4467 5047 1.202770 ACAGTCCGGTTCTCCTTTTGG 60.203 52.381 0.00 0.0 42.21 3.28 R
4861 5884 1.212455 CGTCTGCGTGTAAGTGCACA 61.212 55.000 21.04 0.0 39.19 4.57 R
5982 7302 0.239347 CCGCAAGAGCACTTTCAAGG 59.761 55.000 0.00 0.0 42.27 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 3.497115 TTGCCTCCCTGCACCACA 61.497 61.111 0.00 0.00 41.88 4.17
116 117 2.925170 AGGGCGGCTTCTGTCAGT 60.925 61.111 9.56 0.00 0.00 3.41
136 137 0.873743 TTTTTGAGCAAAAGCGCGGG 60.874 50.000 8.83 0.00 40.83 6.13
139 140 3.660111 GAGCAAAAGCGCGGGTGT 61.660 61.111 8.83 0.00 36.85 4.16
181 182 2.663826 AACCTCAAGTCTCGCAGATC 57.336 50.000 0.00 0.00 33.89 2.75
187 188 2.425312 TCAAGTCTCGCAGATCTTCCTC 59.575 50.000 0.00 0.00 33.89 3.71
194 199 3.535561 TCGCAGATCTTCCTCAATTTCC 58.464 45.455 0.00 0.00 0.00 3.13
202 207 6.658391 AGATCTTCCTCAATTTCCTGTTCTTG 59.342 38.462 0.00 0.00 0.00 3.02
217 222 5.462530 TGTTCTTGTAGCAGTGTAGCTTA 57.537 39.130 0.00 0.00 43.70 3.09
220 225 6.764085 TGTTCTTGTAGCAGTGTAGCTTAAAA 59.236 34.615 0.00 0.00 43.70 1.52
221 226 7.444183 TGTTCTTGTAGCAGTGTAGCTTAAAAT 59.556 33.333 0.00 0.00 43.70 1.82
264 270 4.634443 TCTCATCAATGTCATGCAACAGAG 59.366 41.667 0.00 0.00 31.50 3.35
272 278 1.699083 TCATGCAACAGAGGGACAAGA 59.301 47.619 0.00 0.00 0.00 3.02
273 279 2.306805 TCATGCAACAGAGGGACAAGAT 59.693 45.455 0.00 0.00 0.00 2.40
303 309 8.913487 TTTTTATTTATCTATTCCCCTCCGTC 57.087 34.615 0.00 0.00 0.00 4.79
304 310 6.616237 TTATTTATCTATTCCCCTCCGTCC 57.384 41.667 0.00 0.00 0.00 4.79
305 311 2.617840 TATCTATTCCCCTCCGTCCC 57.382 55.000 0.00 0.00 0.00 4.46
306 312 0.566176 ATCTATTCCCCTCCGTCCCA 59.434 55.000 0.00 0.00 0.00 4.37
307 313 0.566176 TCTATTCCCCTCCGTCCCAT 59.434 55.000 0.00 0.00 0.00 4.00
308 314 1.790779 TCTATTCCCCTCCGTCCCATA 59.209 52.381 0.00 0.00 0.00 2.74
309 315 2.180529 TCTATTCCCCTCCGTCCCATAA 59.819 50.000 0.00 0.00 0.00 1.90
310 316 2.133858 ATTCCCCTCCGTCCCATAAT 57.866 50.000 0.00 0.00 0.00 1.28
311 317 2.799282 TTCCCCTCCGTCCCATAATA 57.201 50.000 0.00 0.00 0.00 0.98
312 318 3.285290 TTCCCCTCCGTCCCATAATAT 57.715 47.619 0.00 0.00 0.00 1.28
313 319 4.423167 TTCCCCTCCGTCCCATAATATA 57.577 45.455 0.00 0.00 0.00 0.86
314 320 4.423167 TCCCCTCCGTCCCATAATATAA 57.577 45.455 0.00 0.00 0.00 0.98
315 321 4.359105 TCCCCTCCGTCCCATAATATAAG 58.641 47.826 0.00 0.00 0.00 1.73
316 322 4.046231 TCCCCTCCGTCCCATAATATAAGA 59.954 45.833 0.00 0.00 0.00 2.10
317 323 4.406003 CCCCTCCGTCCCATAATATAAGAG 59.594 50.000 0.00 0.00 0.00 2.85
318 324 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
319 325 4.440250 CCTCCGTCCCATAATATAAGAGCG 60.440 50.000 0.00 0.00 0.00 5.03
320 326 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
321 327 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
322 328 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
323 329 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
324 330 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
358 364 2.936919 TCACAGCTCATTCAACCAGT 57.063 45.000 0.00 0.00 0.00 4.00
362 368 5.316167 TCACAGCTCATTCAACCAGTTATT 58.684 37.500 0.00 0.00 0.00 1.40
397 403 8.702163 AACCAAAACAAGTACAGAAAAATGAG 57.298 30.769 0.00 0.00 0.00 2.90
405 411 9.566432 ACAAGTACAGAAAAATGAGAATCTTCT 57.434 29.630 0.00 0.00 41.00 2.85
416 422 4.800023 TGAGAATCTTCTGTATCCCCGTA 58.200 43.478 0.00 0.00 37.73 4.02
417 423 4.827835 TGAGAATCTTCTGTATCCCCGTAG 59.172 45.833 0.00 0.00 37.73 3.51
430 436 5.899631 ATCCCCGTAGTTTATATGGTGTT 57.100 39.130 0.00 0.00 0.00 3.32
440 446 6.405538 AGTTTATATGGTGTTTTTGCCATGG 58.594 36.000 7.63 7.63 44.43 3.66
442 448 2.837532 ATGGTGTTTTTGCCATGGTC 57.162 45.000 14.67 6.41 43.25 4.02
519 525 4.387862 GTCCAAATGAGCTGCATCTTTTTG 59.612 41.667 14.90 14.90 35.78 2.44
533 540 7.600960 TGCATCTTTTTGTATACTTTGCATGA 58.399 30.769 4.17 0.00 33.09 3.07
598 605 0.255318 CTTGCTCCAATCCTGGCTCT 59.745 55.000 0.00 0.00 43.17 4.09
600 607 1.823041 GCTCCAATCCTGGCTCTGC 60.823 63.158 0.00 0.00 43.17 4.26
678 685 6.717540 TCTTGGCTCCTTCTAGAGATATACAC 59.282 42.308 0.00 0.00 35.82 2.90
746 754 3.377798 CCAACTTGGTTTGCATTTGCTTT 59.622 39.130 3.94 0.00 35.78 3.51
777 785 5.418840 CCCATAGGTTCAAGCAATACAAGTT 59.581 40.000 0.00 0.00 0.00 2.66
781 789 6.655078 AGGTTCAAGCAATACAAGTTGAAT 57.345 33.333 10.54 0.00 40.16 2.57
784 792 8.082242 AGGTTCAAGCAATACAAGTTGAATTAC 58.918 33.333 10.54 0.00 40.16 1.89
815 823 6.703607 TCAGCAACTTTTGAACTTGTTTTCAA 59.296 30.769 0.00 0.00 42.47 2.69
874 882 2.156098 GTTGCAATAAACTGGACGGGA 58.844 47.619 0.59 0.00 0.00 5.14
875 883 2.554893 GTTGCAATAAACTGGACGGGAA 59.445 45.455 0.59 0.00 0.00 3.97
937 945 7.510675 AAAGAGGATTTATGTCTGGGTCTAA 57.489 36.000 0.00 0.00 0.00 2.10
938 946 7.698163 AAGAGGATTTATGTCTGGGTCTAAT 57.302 36.000 0.00 0.00 0.00 1.73
939 947 7.072263 AGAGGATTTATGTCTGGGTCTAATG 57.928 40.000 0.00 0.00 0.00 1.90
941 949 5.911178 AGGATTTATGTCTGGGTCTAATGGA 59.089 40.000 0.00 0.00 0.00 3.41
942 950 5.998363 GGATTTATGTCTGGGTCTAATGGAC 59.002 44.000 0.00 0.00 43.79 4.02
964 973 1.745653 GAGCATTGAACTTGTAGGCCC 59.254 52.381 0.00 0.00 0.00 5.80
1021 1030 3.461773 CGCCCTCGTCATCACCCT 61.462 66.667 0.00 0.00 0.00 4.34
1026 1035 1.296392 CTCGTCATCACCCTTGCCA 59.704 57.895 0.00 0.00 0.00 4.92
1048 1057 2.211806 GCCGTCTCGTCATACTCTACT 58.788 52.381 0.00 0.00 0.00 2.57
1139 1148 0.109039 GCTGTCGAGGTTCTCTCCAC 60.109 60.000 0.00 0.00 39.30 4.02
1161 1170 4.343239 ACGGATAGCTTTAATCCCGTAAGT 59.657 41.667 8.18 0.00 39.92 2.24
1221 1230 5.123936 CCATCTGATGTCATGTGAACATCT 58.876 41.667 20.52 4.70 40.45 2.90
1222 1231 5.236695 CCATCTGATGTCATGTGAACATCTC 59.763 44.000 20.52 4.38 40.45 2.75
1238 1247 0.958876 TCTCACTCGCCGCTCACTTA 60.959 55.000 0.00 0.00 0.00 2.24
1294 1303 9.113838 GTTTATGATCTTCATTGTGTCTACCAT 57.886 33.333 0.00 0.00 38.26 3.55
1307 1316 1.692749 TACCATGGGGCAGGGAGAC 60.693 63.158 18.09 0.00 37.52 3.36
1331 1340 1.565759 CCAGATTCCATGAAGGTGGGA 59.434 52.381 0.00 0.00 39.80 4.37
1343 1352 3.511146 TGAAGGTGGGAAGATTGAAATGC 59.489 43.478 0.00 0.00 0.00 3.56
1347 1356 3.359950 GTGGGAAGATTGAAATGCCTCT 58.640 45.455 0.00 0.00 0.00 3.69
1361 1370 2.504367 TGCCTCTTTTGCTTGGTAGTC 58.496 47.619 0.00 0.00 0.00 2.59
1362 1371 1.464997 GCCTCTTTTGCTTGGTAGTCG 59.535 52.381 0.00 0.00 0.00 4.18
1422 1434 6.333416 GCAGGATTTTTGGAAATACCTTCTC 58.667 40.000 0.00 0.00 36.86 2.87
1468 1480 3.635331 CTGAAAGGATTGCATTATGCCG 58.365 45.455 15.06 0.00 44.23 5.69
1549 1562 2.569059 ACAGCCTGCTATTGTGCTATG 58.431 47.619 0.00 0.00 31.69 2.23
1560 1573 5.449041 GCTATTGTGCTATGTGCTGCTTTTA 60.449 40.000 0.00 0.00 43.37 1.52
1627 1640 8.811017 TCATTAGTTTCTTGGGAATTAATTGCA 58.189 29.630 19.71 5.16 0.00 4.08
1636 1649 9.639563 TCTTGGGAATTAATTGCAGATATAACA 57.360 29.630 19.71 4.81 0.00 2.41
1669 1682 1.512522 CAACATGTGATGGTGCGCG 60.513 57.895 0.00 0.00 41.66 6.86
1671 1684 3.126879 CATGTGATGGTGCGCGGT 61.127 61.111 8.83 0.00 0.00 5.68
1691 1704 5.448632 GCGGTGTTGGAAAAGAAGTATATGG 60.449 44.000 0.00 0.00 0.00 2.74
1694 1707 7.308951 CGGTGTTGGAAAAGAAGTATATGGTTT 60.309 37.037 0.00 0.00 0.00 3.27
1703 1716 9.908152 AAAAGAAGTATATGGTTTTAGCAACAC 57.092 29.630 0.00 0.00 0.00 3.32
1730 1743 3.068024 TCATCTGTTTTTCTGGTGGTTGC 59.932 43.478 0.00 0.00 0.00 4.17
1752 1765 4.292643 CAAAGGATGATTTTGGGAGGGAT 58.707 43.478 0.00 0.00 33.08 3.85
1773 1786 8.172741 AGGGATAACTTCATTGTGCCATATAAT 58.827 33.333 0.00 0.00 41.72 1.28
1830 1843 3.706802 TTGAGAAAATGTCGCAAAGCA 57.293 38.095 0.00 0.00 42.29 3.91
1840 1853 4.976224 TGTCGCAAAGCATACTAGAGTA 57.024 40.909 0.00 0.00 34.67 2.59
1996 2011 4.990543 TGCGGATTTCTTATTGCTATCG 57.009 40.909 0.00 0.00 0.00 2.92
2016 2033 4.689071 TCGTGGCTATAGTACCATGTTTG 58.311 43.478 14.69 1.39 42.52 2.93
2021 2038 7.574217 CGTGGCTATAGTACCATGTTTGTTTTT 60.574 37.037 9.39 0.00 38.46 1.94
2022 2039 7.753580 GTGGCTATAGTACCATGTTTGTTTTTC 59.246 37.037 0.84 0.00 38.46 2.29
2168 2201 2.679837 GCAATCAAGCTCGATCAAAGGA 59.320 45.455 0.00 0.00 0.00 3.36
2290 2340 3.118847 TCATGTGTGATCTCTGGAGAAGC 60.119 47.826 4.34 1.45 41.36 3.86
2346 2402 4.020839 AGCAATGGTTTTCCCTTCTTGATG 60.021 41.667 0.00 0.00 39.73 3.07
2347 2403 4.021192 GCAATGGTTTTCCCTTCTTGATGA 60.021 41.667 0.00 0.00 39.73 2.92
2348 2404 5.473039 CAATGGTTTTCCCTTCTTGATGAC 58.527 41.667 0.00 0.00 39.73 3.06
2638 2698 9.314321 TCTTGCTAATGTTTACTAGTAATCTGC 57.686 33.333 15.92 15.86 0.00 4.26
2751 2815 5.624159 TGCTCTAAAGTGCCATAATAGCAT 58.376 37.500 0.00 0.00 43.29 3.79
3014 3078 5.008911 CACTCAACAAATCCATCAGTTGTCA 59.991 40.000 0.00 0.00 42.49 3.58
3064 3138 6.039047 TCCGTAAGTGATAGTTTAGTAGGCTG 59.961 42.308 0.00 0.00 0.00 4.85
3076 3150 5.458041 TTAGTAGGCTGTTTTGTACGACT 57.542 39.130 0.00 0.00 0.00 4.18
3077 3151 3.910648 AGTAGGCTGTTTTGTACGACTC 58.089 45.455 0.00 0.00 0.00 3.36
3078 3152 1.779569 AGGCTGTTTTGTACGACTCG 58.220 50.000 0.00 0.00 0.00 4.18
3117 3195 3.007290 TGCATAAGCTCCTGCATAGTAGG 59.993 47.826 16.70 0.00 43.11 3.18
3124 3202 0.179045 CCTGCATAGTAGGTGGGTGC 60.179 60.000 0.00 0.00 36.39 5.01
3129 3207 1.414181 CATAGTAGGTGGGTGCTGGAG 59.586 57.143 0.00 0.00 0.00 3.86
3130 3208 0.976073 TAGTAGGTGGGTGCTGGAGC 60.976 60.000 0.00 0.00 42.50 4.70
3313 3584 4.868171 TCATGCTTCGTCTGTATTGTAACC 59.132 41.667 0.00 0.00 0.00 2.85
3465 3750 3.056607 CCGCCACTTTGAATTGGAAGATT 60.057 43.478 4.48 0.00 34.46 2.40
3765 4084 5.837437 CACTTTTGTGGCCAACATTAGTAA 58.163 37.500 7.24 0.00 46.16 2.24
3780 4099 5.820423 ACATTAGTAACTTTGTGCACACTCA 59.180 36.000 21.56 1.32 0.00 3.41
3781 4100 6.486657 ACATTAGTAACTTTGTGCACACTCAT 59.513 34.615 21.56 9.28 0.00 2.90
3782 4101 6.935741 TTAGTAACTTTGTGCACACTCATT 57.064 33.333 21.56 13.83 0.00 2.57
3783 4102 5.835113 AGTAACTTTGTGCACACTCATTT 57.165 34.783 21.56 10.90 0.00 2.32
3784 4103 6.935741 AGTAACTTTGTGCACACTCATTTA 57.064 33.333 21.56 9.91 0.00 1.40
3852 4186 5.477607 CTACAGCTAGAGAGTAGCCTAGA 57.522 47.826 0.00 0.00 41.25 2.43
3960 4421 3.142174 GGGCTAGCAGTTTATCATGGTC 58.858 50.000 18.24 0.00 0.00 4.02
4072 4534 9.968743 GTATTAGTTGTGTCTTTGTTGCTATAC 57.031 33.333 0.00 0.00 0.00 1.47
4151 4614 1.827315 TTTCTGCGCAGGTTCGAACG 61.827 55.000 35.36 11.54 0.00 3.95
4220 4707 5.781210 TTGTTGCTTTGACAATGGATGTA 57.219 34.783 3.51 0.00 44.12 2.29
4224 4711 5.119931 TGCTTTGACAATGGATGTAACAC 57.880 39.130 3.51 0.00 44.12 3.32
4236 4723 3.370953 GGATGTAACACCAGCTTCTCCAT 60.371 47.826 0.00 0.00 0.00 3.41
4237 4724 4.141711 GGATGTAACACCAGCTTCTCCATA 60.142 45.833 0.00 0.00 0.00 2.74
4421 5001 4.322274 TGAACGTGAAAAAGCAAAACTTCG 59.678 37.500 0.00 0.00 37.75 3.79
4467 5047 1.070821 GCGACCTTTACCGGTACAAC 58.929 55.000 15.53 3.77 37.42 3.32
4523 5103 8.451908 AGTAATGCCTTAATTACCACTGATTC 57.548 34.615 3.99 0.00 41.84 2.52
4601 5251 2.823154 TGCACTGGTTTTAGGTATTGGC 59.177 45.455 0.00 0.00 0.00 4.52
4749 5658 5.208890 AGTGTAGTATCATGGCTTACTCCA 58.791 41.667 7.03 1.60 40.97 3.86
4861 5884 3.002656 CACACGAGAAAATGCAACTCACT 59.997 43.478 0.00 0.00 0.00 3.41
5050 6078 5.625150 ACTGTTGCTCCTGTTCTATTCTTT 58.375 37.500 0.00 0.00 0.00 2.52
5071 6099 3.478857 TTCGGCTGTAGAAACCAAGAA 57.521 42.857 0.00 0.00 0.00 2.52
5145 6173 0.818040 GTGCTGTCCCACGAAAAGGT 60.818 55.000 0.00 0.00 0.00 3.50
5159 6187 0.179040 AAAGGTCGGCGGTTTCTTCA 60.179 50.000 7.21 0.00 0.00 3.02
5164 6192 1.961277 CGGCGGTTTCTTCACTGCT 60.961 57.895 0.00 0.00 46.73 4.24
5256 6284 0.391661 ATGCTGTGCTCCGAATCGTT 60.392 50.000 0.82 0.00 0.00 3.85
5287 6315 1.447317 TATACGTCGCCGGGTCTTCC 61.447 60.000 2.18 0.00 38.78 3.46
5450 6478 1.453155 GAGATTTTCTGGGCTTGCGA 58.547 50.000 0.00 0.00 0.00 5.10
5466 6494 1.745087 TGCGATCCAAGCAAGATTTCC 59.255 47.619 0.00 0.00 42.18 3.13
5467 6495 1.745087 GCGATCCAAGCAAGATTTCCA 59.255 47.619 0.00 0.00 34.19 3.53
5468 6496 2.164219 GCGATCCAAGCAAGATTTCCAA 59.836 45.455 0.00 0.00 34.19 3.53
5469 6497 3.733077 GCGATCCAAGCAAGATTTCCAAG 60.733 47.826 0.00 0.00 34.19 3.61
5470 6498 3.733077 CGATCCAAGCAAGATTTCCAAGC 60.733 47.826 0.00 0.00 0.00 4.01
5471 6499 2.596346 TCCAAGCAAGATTTCCAAGCA 58.404 42.857 0.00 0.00 0.00 3.91
5485 6515 2.297033 TCCAAGCAAGATTTTGAGCCAC 59.703 45.455 0.00 0.00 36.36 5.01
5488 6518 1.271656 AGCAAGATTTTGAGCCACTGC 59.728 47.619 0.00 0.00 36.36 4.40
5519 6549 3.879892 CTCCAAAGCAATTAGACTAGGCC 59.120 47.826 0.00 0.00 0.00 5.19
5520 6550 2.952310 CCAAAGCAATTAGACTAGGCCC 59.048 50.000 0.00 0.00 0.00 5.80
5521 6551 3.372025 CCAAAGCAATTAGACTAGGCCCT 60.372 47.826 0.00 0.00 0.00 5.19
5522 6552 3.567478 AAGCAATTAGACTAGGCCCTG 57.433 47.619 0.00 0.00 0.00 4.45
5523 6553 2.482494 AGCAATTAGACTAGGCCCTGT 58.518 47.619 0.00 0.00 0.00 4.00
5524 6554 2.846827 AGCAATTAGACTAGGCCCTGTT 59.153 45.455 0.00 0.00 0.00 3.16
5525 6555 3.267031 AGCAATTAGACTAGGCCCTGTTT 59.733 43.478 0.00 0.00 0.00 2.83
5526 6556 3.378427 GCAATTAGACTAGGCCCTGTTTG 59.622 47.826 0.00 1.43 0.00 2.93
5527 6557 3.933861 ATTAGACTAGGCCCTGTTTGG 57.066 47.619 0.00 0.00 0.00 3.28
5528 6558 2.337359 TAGACTAGGCCCTGTTTGGT 57.663 50.000 0.00 0.00 0.00 3.67
5529 6559 1.446016 AGACTAGGCCCTGTTTGGTT 58.554 50.000 0.00 0.00 0.00 3.67
5530 6560 1.351350 AGACTAGGCCCTGTTTGGTTC 59.649 52.381 0.00 0.00 0.00 3.62
5531 6561 1.073284 GACTAGGCCCTGTTTGGTTCA 59.927 52.381 0.00 0.00 0.00 3.18
5532 6562 1.710809 ACTAGGCCCTGTTTGGTTCAT 59.289 47.619 0.00 0.00 0.00 2.57
5533 6563 2.916934 ACTAGGCCCTGTTTGGTTCATA 59.083 45.455 0.00 0.00 0.00 2.15
5534 6564 2.990740 AGGCCCTGTTTGGTTCATAA 57.009 45.000 0.00 0.00 0.00 1.90
5535 6565 2.807676 AGGCCCTGTTTGGTTCATAAG 58.192 47.619 0.00 0.00 0.00 1.73
5536 6566 2.110011 AGGCCCTGTTTGGTTCATAAGT 59.890 45.455 0.00 0.00 0.00 2.24
5537 6567 2.492088 GGCCCTGTTTGGTTCATAAGTC 59.508 50.000 0.00 0.00 0.00 3.01
5538 6568 2.492088 GCCCTGTTTGGTTCATAAGTCC 59.508 50.000 0.00 0.00 0.00 3.85
5539 6569 3.814316 GCCCTGTTTGGTTCATAAGTCCT 60.814 47.826 0.00 0.00 0.00 3.85
5540 6570 4.566907 GCCCTGTTTGGTTCATAAGTCCTA 60.567 45.833 0.00 0.00 0.00 2.94
5541 6571 5.186198 CCCTGTTTGGTTCATAAGTCCTAG 58.814 45.833 0.00 0.00 0.00 3.02
5542 6572 5.186198 CCTGTTTGGTTCATAAGTCCTAGG 58.814 45.833 0.82 0.82 0.00 3.02
5543 6573 5.045869 CCTGTTTGGTTCATAAGTCCTAGGA 60.046 44.000 7.62 7.62 0.00 2.94
5544 6574 5.801380 TGTTTGGTTCATAAGTCCTAGGAC 58.199 41.667 31.29 31.29 44.86 3.85
5572 6602 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
5573 6603 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
5574 6604 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
5575 6605 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
5576 6606 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
5577 6607 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
5578 6608 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
5579 6609 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
5580 6610 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
5581 6611 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
5582 6612 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
5583 6613 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
5584 6614 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
5585 6615 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
5586 6616 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
5587 6617 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
5588 6618 3.074094 AGTCCCAAGTCCCTAAAAAGTCC 59.926 47.826 0.00 0.00 0.00 3.85
5589 6619 2.377531 TCCCAAGTCCCTAAAAAGTCCC 59.622 50.000 0.00 0.00 0.00 4.46
5590 6620 2.378886 CCCAAGTCCCTAAAAAGTCCCT 59.621 50.000 0.00 0.00 0.00 4.20
5591 6621 3.590182 CCCAAGTCCCTAAAAAGTCCCTA 59.410 47.826 0.00 0.00 0.00 3.53
5592 6622 4.567116 CCCAAGTCCCTAAAAAGTCCCTAC 60.567 50.000 0.00 0.00 0.00 3.18
5593 6623 4.567116 CCAAGTCCCTAAAAAGTCCCTACC 60.567 50.000 0.00 0.00 0.00 3.18
5594 6624 4.157668 AGTCCCTAAAAAGTCCCTACCT 57.842 45.455 0.00 0.00 0.00 3.08
5595 6625 3.844804 AGTCCCTAAAAAGTCCCTACCTG 59.155 47.826 0.00 0.00 0.00 4.00
5596 6626 3.586174 GTCCCTAAAAAGTCCCTACCTGT 59.414 47.826 0.00 0.00 0.00 4.00
5597 6627 4.042560 GTCCCTAAAAAGTCCCTACCTGTT 59.957 45.833 0.00 0.00 0.00 3.16
5598 6628 4.666431 TCCCTAAAAAGTCCCTACCTGTTT 59.334 41.667 0.00 0.00 0.00 2.83
5599 6629 4.765339 CCCTAAAAAGTCCCTACCTGTTTG 59.235 45.833 0.00 0.00 0.00 2.93
5600 6630 4.765339 CCTAAAAAGTCCCTACCTGTTTGG 59.235 45.833 0.00 0.00 42.93 3.28
5611 6641 2.938956 CCTGTTTGGTTCCTGAGACT 57.061 50.000 0.00 0.00 0.00 3.24
5612 6642 3.214696 CCTGTTTGGTTCCTGAGACTT 57.785 47.619 0.00 0.00 0.00 3.01
5613 6643 4.351874 CCTGTTTGGTTCCTGAGACTTA 57.648 45.455 0.00 0.00 0.00 2.24
5614 6644 4.911390 CCTGTTTGGTTCCTGAGACTTAT 58.089 43.478 0.00 0.00 0.00 1.73
5615 6645 6.049955 CCTGTTTGGTTCCTGAGACTTATA 57.950 41.667 0.00 0.00 0.00 0.98
5616 6646 6.472887 CCTGTTTGGTTCCTGAGACTTATAA 58.527 40.000 0.00 0.00 0.00 0.98
5617 6647 6.595716 CCTGTTTGGTTCCTGAGACTTATAAG 59.404 42.308 11.05 11.05 0.00 1.73
5618 6648 7.074653 TGTTTGGTTCCTGAGACTTATAAGT 57.925 36.000 18.05 18.05 43.16 2.24
5641 6671 9.448587 AAGTCCCTATAAGACCATATTACAACT 57.551 33.333 0.09 0.00 34.67 3.16
5651 6681 9.448587 AAGACCATATTACAACTATAAGTCCCT 57.551 33.333 0.00 0.00 0.00 4.20
5662 6692 9.577222 ACAACTATAAGTCCCTATAAGACTCTC 57.423 37.037 5.74 0.00 43.77 3.20
5663 6693 9.016438 CAACTATAAGTCCCTATAAGACTCTCC 57.984 40.741 5.74 0.00 43.77 3.71
5664 6694 8.528543 ACTATAAGTCCCTATAAGACTCTCCT 57.471 38.462 5.74 0.00 43.77 3.69
5665 6695 8.962205 ACTATAAGTCCCTATAAGACTCTCCTT 58.038 37.037 5.74 0.00 43.77 3.36
5666 6696 9.238368 CTATAAGTCCCTATAAGACTCTCCTTG 57.762 40.741 5.74 0.00 43.77 3.61
5667 6697 5.735733 AGTCCCTATAAGACTCTCCTTGA 57.264 43.478 0.24 0.00 40.61 3.02
5668 6698 5.701224 AGTCCCTATAAGACTCTCCTTGAG 58.299 45.833 0.24 0.00 40.61 3.02
5669 6699 5.433712 AGTCCCTATAAGACTCTCCTTGAGA 59.566 44.000 0.00 0.00 45.39 3.27
5685 6715 9.261035 TCTCCTTGAGAGTCTTATTTCATAAGT 57.739 33.333 0.00 0.00 43.71 2.24
5686 6716 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
5687 6717 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
5688 6718 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
5689 6719 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
5690 6720 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
5691 6721 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
5692 6722 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
5693 6723 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
5694 6724 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
5695 6725 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
5696 6726 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
5697 6727 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
5698 6728 3.686227 TCATAAGTCCCAAATGCCCAT 57.314 42.857 0.00 0.00 0.00 4.00
5699 6729 3.992999 TCATAAGTCCCAAATGCCCATT 58.007 40.909 0.00 0.00 0.00 3.16
5700 6730 4.360889 TCATAAGTCCCAAATGCCCATTT 58.639 39.130 0.57 0.57 41.33 2.32
5701 6731 5.523588 TCATAAGTCCCAAATGCCCATTTA 58.476 37.500 5.97 0.00 38.84 1.40
5702 6732 5.960811 TCATAAGTCCCAAATGCCCATTTAA 59.039 36.000 5.97 0.00 38.84 1.52
5703 6733 4.824479 AAGTCCCAAATGCCCATTTAAG 57.176 40.909 5.97 1.94 38.84 1.85
5704 6734 3.790126 AGTCCCAAATGCCCATTTAAGT 58.210 40.909 5.97 0.00 38.84 2.24
5705 6735 3.769300 AGTCCCAAATGCCCATTTAAGTC 59.231 43.478 5.97 0.45 38.84 3.01
5706 6736 3.103742 TCCCAAATGCCCATTTAAGTCC 58.896 45.455 5.97 0.00 38.84 3.85
5707 6737 3.106827 CCCAAATGCCCATTTAAGTCCT 58.893 45.455 5.97 0.00 38.84 3.85
5708 6738 3.519107 CCCAAATGCCCATTTAAGTCCTT 59.481 43.478 5.97 0.00 38.84 3.36
5709 6739 4.714308 CCCAAATGCCCATTTAAGTCCTTA 59.286 41.667 5.97 0.00 38.84 2.69
5710 6740 5.366477 CCCAAATGCCCATTTAAGTCCTTAT 59.634 40.000 5.97 0.00 38.84 1.73
5711 6741 6.553100 CCCAAATGCCCATTTAAGTCCTTATA 59.447 38.462 5.97 0.00 38.84 0.98
5712 6742 7.070571 CCCAAATGCCCATTTAAGTCCTTATAA 59.929 37.037 5.97 0.00 38.84 0.98
5713 6743 8.143835 CCAAATGCCCATTTAAGTCCTTATAAG 58.856 37.037 5.43 5.43 38.84 1.73
5714 6744 8.695456 CAAATGCCCATTTAAGTCCTTATAAGT 58.305 33.333 11.50 0.00 38.84 2.24
5715 6745 8.838649 AATGCCCATTTAAGTCCTTATAAGTT 57.161 30.769 11.50 2.35 0.00 2.66
5716 6746 7.875327 TGCCCATTTAAGTCCTTATAAGTTC 57.125 36.000 11.50 4.25 0.00 3.01
5717 6747 7.639378 TGCCCATTTAAGTCCTTATAAGTTCT 58.361 34.615 11.50 6.34 0.00 3.01
5718 6748 8.113462 TGCCCATTTAAGTCCTTATAAGTTCTT 58.887 33.333 11.50 15.13 0.00 2.52
5719 6749 8.622157 GCCCATTTAAGTCCTTATAAGTTCTTC 58.378 37.037 17.03 3.45 0.00 2.87
5720 6750 9.121658 CCCATTTAAGTCCTTATAAGTTCTTCC 57.878 37.037 17.03 0.00 0.00 3.46
5721 6751 9.907229 CCATTTAAGTCCTTATAAGTTCTTCCT 57.093 33.333 17.03 6.43 0.00 3.36
5726 6756 8.622948 AAGTCCTTATAAGTTCTTCCTGTTTG 57.377 34.615 11.50 0.00 0.00 2.93
5727 6757 7.168905 AGTCCTTATAAGTTCTTCCTGTTTGG 58.831 38.462 11.50 0.00 37.10 3.28
5728 6758 6.940867 GTCCTTATAAGTTCTTCCTGTTTGGT 59.059 38.462 11.50 0.00 37.07 3.67
5729 6759 7.447545 GTCCTTATAAGTTCTTCCTGTTTGGTT 59.552 37.037 11.50 0.00 37.07 3.67
5730 6760 8.002459 TCCTTATAAGTTCTTCCTGTTTGGTTT 58.998 33.333 11.50 0.00 37.07 3.27
5731 6761 9.292195 CCTTATAAGTTCTTCCTGTTTGGTTTA 57.708 33.333 11.50 0.00 37.07 2.01
5735 6765 6.884280 AGTTCTTCCTGTTTGGTTTAGATG 57.116 37.500 0.00 0.00 37.07 2.90
5736 6766 5.770162 AGTTCTTCCTGTTTGGTTTAGATGG 59.230 40.000 0.00 0.00 37.07 3.51
5737 6767 4.662278 TCTTCCTGTTTGGTTTAGATGGG 58.338 43.478 0.00 0.00 37.07 4.00
5738 6768 4.352595 TCTTCCTGTTTGGTTTAGATGGGA 59.647 41.667 0.00 0.00 37.07 4.37
5739 6769 4.028993 TCCTGTTTGGTTTAGATGGGAC 57.971 45.455 0.00 0.00 37.07 4.46
5740 6770 3.655777 TCCTGTTTGGTTTAGATGGGACT 59.344 43.478 0.00 0.00 37.07 3.85
5741 6771 4.105697 TCCTGTTTGGTTTAGATGGGACTT 59.894 41.667 0.00 0.00 37.07 3.01
5742 6772 5.311121 TCCTGTTTGGTTTAGATGGGACTTA 59.689 40.000 0.00 0.00 37.07 2.24
5743 6773 6.011981 TCCTGTTTGGTTTAGATGGGACTTAT 60.012 38.462 0.00 0.00 37.07 1.73
5744 6774 7.183112 TCCTGTTTGGTTTAGATGGGACTTATA 59.817 37.037 0.00 0.00 37.07 0.98
5745 6775 7.499232 CCTGTTTGGTTTAGATGGGACTTATAG 59.501 40.741 0.00 0.00 0.00 1.31
5746 6776 7.343357 TGTTTGGTTTAGATGGGACTTATAGG 58.657 38.462 0.00 0.00 0.00 2.57
5747 6777 6.509523 TTGGTTTAGATGGGACTTATAGGG 57.490 41.667 0.00 0.00 0.00 3.53
5748 6778 5.795079 TGGTTTAGATGGGACTTATAGGGA 58.205 41.667 0.00 0.00 0.00 4.20
5749 6779 5.605488 TGGTTTAGATGGGACTTATAGGGAC 59.395 44.000 0.00 0.00 0.00 4.46
5750 6780 5.845065 GGTTTAGATGGGACTTATAGGGACT 59.155 44.000 0.00 0.00 46.37 3.85
5751 6781 6.329460 GGTTTAGATGGGACTTATAGGGACTT 59.671 42.308 0.00 0.00 41.75 3.01
5752 6782 7.147355 GGTTTAGATGGGACTTATAGGGACTTT 60.147 40.741 0.00 0.00 41.75 2.66
5753 6783 8.272889 GTTTAGATGGGACTTATAGGGACTTTT 58.727 37.037 0.00 0.00 41.75 2.27
5754 6784 6.910259 AGATGGGACTTATAGGGACTTTTT 57.090 37.500 0.00 0.00 41.75 1.94
5777 6807 8.640063 TTTTAAGTCCCTAAACCAATAAGTCC 57.360 34.615 0.00 0.00 0.00 3.85
5778 6808 4.857130 AGTCCCTAAACCAATAAGTCCC 57.143 45.455 0.00 0.00 0.00 4.46
5779 6809 4.445564 AGTCCCTAAACCAATAAGTCCCT 58.554 43.478 0.00 0.00 0.00 4.20
5780 6810 4.227527 AGTCCCTAAACCAATAAGTCCCTG 59.772 45.833 0.00 0.00 0.00 4.45
5781 6811 4.226620 GTCCCTAAACCAATAAGTCCCTGA 59.773 45.833 0.00 0.00 0.00 3.86
5782 6812 4.853276 TCCCTAAACCAATAAGTCCCTGAA 59.147 41.667 0.00 0.00 0.00 3.02
5783 6813 5.313772 TCCCTAAACCAATAAGTCCCTGAAA 59.686 40.000 0.00 0.00 0.00 2.69
5784 6814 6.014012 CCCTAAACCAATAAGTCCCTGAAAA 58.986 40.000 0.00 0.00 0.00 2.29
5785 6815 6.071560 CCCTAAACCAATAAGTCCCTGAAAAC 60.072 42.308 0.00 0.00 0.00 2.43
5786 6816 6.492087 CCTAAACCAATAAGTCCCTGAAAACA 59.508 38.462 0.00 0.00 0.00 2.83
5787 6817 6.800072 AAACCAATAAGTCCCTGAAAACAA 57.200 33.333 0.00 0.00 0.00 2.83
5788 6818 6.800072 AACCAATAAGTCCCTGAAAACAAA 57.200 33.333 0.00 0.00 0.00 2.83
5789 6819 6.156748 ACCAATAAGTCCCTGAAAACAAAC 57.843 37.500 0.00 0.00 0.00 2.93
5790 6820 5.659079 ACCAATAAGTCCCTGAAAACAAACA 59.341 36.000 0.00 0.00 0.00 2.83
5791 6821 5.983118 CCAATAAGTCCCTGAAAACAAACAC 59.017 40.000 0.00 0.00 0.00 3.32
5792 6822 5.784578 ATAAGTCCCTGAAAACAAACACC 57.215 39.130 0.00 0.00 0.00 4.16
5793 6823 2.384828 AGTCCCTGAAAACAAACACCC 58.615 47.619 0.00 0.00 0.00 4.61
5794 6824 2.024369 AGTCCCTGAAAACAAACACCCT 60.024 45.455 0.00 0.00 0.00 4.34
5806 6836 6.575162 AACAAACACCCTCTAATGATGTTC 57.425 37.500 0.00 0.00 32.46 3.18
5945 7265 3.118261 TCTGCTATTCCCAGATCAACCAC 60.118 47.826 0.00 0.00 34.59 4.16
5982 7302 2.943033 ACCATCGTATTAAAGTGCAGCC 59.057 45.455 0.00 0.00 0.00 4.85
5999 7319 0.038801 GCCCTTGAAAGTGCTCTTGC 60.039 55.000 1.02 0.02 40.20 4.01
6198 7533 2.408565 CTAGTTGGGGATTGGGCTCTA 58.591 52.381 0.00 0.00 0.00 2.43
6207 7542 0.753262 ATTGGGCTCTAGTGGTAGCG 59.247 55.000 0.00 0.00 39.71 4.26
6208 7543 2.417936 GGGCTCTAGTGGTAGCGC 59.582 66.667 0.00 0.00 43.20 5.92
6237 7574 0.817654 GGGTCCACTATTTTGCCAGC 59.182 55.000 0.00 0.00 0.00 4.85
6238 7575 0.817654 GGTCCACTATTTTGCCAGCC 59.182 55.000 0.00 0.00 0.00 4.85
6245 7582 1.068127 CTATTTTGCCAGCCCATCTGC 59.932 52.381 0.00 0.00 41.50 4.26
6329 7670 3.937874 GCATTCTGCAGAAAGAAGATCG 58.062 45.455 31.55 13.72 44.26 3.69
6344 7685 6.591750 AGAAGATCGTAGAAAAACTGAGGA 57.408 37.500 0.00 0.00 43.58 3.71
6345 7686 6.626302 AGAAGATCGTAGAAAAACTGAGGAG 58.374 40.000 0.00 0.00 43.58 3.69
6346 7687 5.331876 AGATCGTAGAAAAACTGAGGAGG 57.668 43.478 0.00 0.00 43.58 4.30
6347 7688 3.314541 TCGTAGAAAAACTGAGGAGGC 57.685 47.619 0.00 0.00 0.00 4.70
6348 7689 2.028385 TCGTAGAAAAACTGAGGAGGCC 60.028 50.000 0.00 0.00 0.00 5.19
6416 7757 8.365399 AGTCATGGTTATGTAAATGTGATACG 57.635 34.615 0.00 0.00 35.73 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 0.165295 GACGCCACGACTAAAAAGCC 59.835 55.000 0.00 0.00 0.00 4.35
47 48 1.411394 CTCGACGCCACGACTAAAAA 58.589 50.000 0.00 0.00 37.37 1.94
49 50 1.443194 GCTCGACGCCACGACTAAA 60.443 57.895 0.00 0.00 37.37 1.85
96 97 4.400961 GACAGAAGCCGCCCTGCT 62.401 66.667 9.55 0.00 45.43 4.24
97 98 4.704833 TGACAGAAGCCGCCCTGC 62.705 66.667 9.55 4.79 33.90 4.85
98 99 2.435586 CTGACAGAAGCCGCCCTG 60.436 66.667 0.00 8.39 36.53 4.45
99 100 2.056906 AAACTGACAGAAGCCGCCCT 62.057 55.000 10.08 0.00 0.00 5.19
100 101 1.172812 AAAACTGACAGAAGCCGCCC 61.173 55.000 10.08 0.00 0.00 6.13
133 134 1.484653 TCCATCACCTGATAACACCCG 59.515 52.381 0.00 0.00 32.63 5.28
136 137 3.187700 GACGTCCATCACCTGATAACAC 58.812 50.000 3.51 0.00 32.63 3.32
139 140 2.747177 AGGACGTCCATCACCTGATAA 58.253 47.619 35.00 0.00 38.89 1.75
181 182 6.348868 GCTACAAGAACAGGAAATTGAGGAAG 60.349 42.308 0.00 0.00 0.00 3.46
187 188 5.009010 ACACTGCTACAAGAACAGGAAATTG 59.991 40.000 0.00 0.00 35.70 2.32
194 199 3.919216 AGCTACACTGCTACAAGAACAG 58.081 45.455 0.00 0.00 42.10 3.16
284 290 3.245441 GGGACGGAGGGGAATAGATAAA 58.755 50.000 0.00 0.00 0.00 1.40
292 298 2.799282 TATTATGGGACGGAGGGGAA 57.201 50.000 0.00 0.00 0.00 3.97
293 299 4.046231 TCTTATATTATGGGACGGAGGGGA 59.954 45.833 0.00 0.00 0.00 4.81
294 300 4.359105 TCTTATATTATGGGACGGAGGGG 58.641 47.826 0.00 0.00 0.00 4.79
295 301 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
296 302 4.440250 CGCTCTTATATTATGGGACGGAGG 60.440 50.000 0.00 0.00 0.00 4.30
297 303 4.158025 ACGCTCTTATATTATGGGACGGAG 59.842 45.833 0.00 0.00 0.00 4.63
298 304 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
299 305 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
300 306 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
358 364 7.123547 ACTTGTTTTGGTTTCTGGAGTCAATAA 59.876 33.333 0.00 0.00 0.00 1.40
362 368 4.340617 ACTTGTTTTGGTTTCTGGAGTCA 58.659 39.130 0.00 0.00 0.00 3.41
397 403 5.532664 AACTACGGGGATACAGAAGATTC 57.467 43.478 0.00 0.00 39.74 2.52
405 411 5.840149 ACACCATATAAACTACGGGGATACA 59.160 40.000 0.00 0.00 39.74 2.29
409 415 5.697082 AAACACCATATAAACTACGGGGA 57.303 39.130 0.00 0.00 0.00 4.81
410 416 6.557110 CAAAAACACCATATAAACTACGGGG 58.443 40.000 0.00 0.00 0.00 5.73
416 422 6.013812 ACCATGGCAAAAACACCATATAAACT 60.014 34.615 13.04 0.00 44.97 2.66
417 423 6.169800 ACCATGGCAAAAACACCATATAAAC 58.830 36.000 13.04 0.00 44.97 2.01
430 436 4.634004 CGAACTACATAGACCATGGCAAAA 59.366 41.667 13.04 0.00 39.13 2.44
519 525 8.726988 TGAAAAAGTACCTCATGCAAAGTATAC 58.273 33.333 0.00 0.00 0.00 1.47
533 540 9.787435 TGTGTATGACTATTTGAAAAAGTACCT 57.213 29.630 0.00 0.00 0.00 3.08
557 564 2.374170 ACCCGGACCAAAATCTAAGTGT 59.626 45.455 0.73 0.00 0.00 3.55
598 605 1.439644 GGCAACCGAAAAAGTGGCA 59.560 52.632 0.00 0.00 35.76 4.92
634 641 7.887495 AGCCAAGAGATCTAACAGAAAGAAATT 59.113 33.333 0.00 0.00 0.00 1.82
635 642 7.401246 AGCCAAGAGATCTAACAGAAAGAAAT 58.599 34.615 0.00 0.00 0.00 2.17
746 754 9.953565 GTATTGCTTGAACCTATGGGTATATAA 57.046 33.333 0.00 0.00 46.67 0.98
784 792 8.411318 ACAAGTTCAAAAGTTGCTGATAAAAG 57.589 30.769 7.07 0.00 43.93 2.27
789 797 6.873076 TGAAAACAAGTTCAAAAGTTGCTGAT 59.127 30.769 7.07 0.00 43.93 2.90
815 823 7.177878 ACAGACCACTCCAAATTTATCAGAAT 58.822 34.615 0.00 0.00 0.00 2.40
884 892 7.989170 ACACAGATGATAGATGCAAGTTCATTA 59.011 33.333 0.00 0.00 0.00 1.90
937 945 2.086869 CAAGTTCAATGCTCGGTCCAT 58.913 47.619 0.00 0.00 0.00 3.41
938 946 1.202758 ACAAGTTCAATGCTCGGTCCA 60.203 47.619 0.00 0.00 0.00 4.02
939 947 1.523758 ACAAGTTCAATGCTCGGTCC 58.476 50.000 0.00 0.00 0.00 4.46
941 949 2.699954 CCTACAAGTTCAATGCTCGGT 58.300 47.619 0.00 0.00 0.00 4.69
942 950 1.398390 GCCTACAAGTTCAATGCTCGG 59.602 52.381 0.00 0.00 0.00 4.63
946 955 0.451783 CGGGCCTACAAGTTCAATGC 59.548 55.000 0.84 0.00 0.00 3.56
983 992 0.697511 CATGGGGAGGTGGGACCATA 60.698 60.000 0.00 0.00 41.56 2.74
985 994 2.613696 CATGGGGAGGTGGGACCA 60.614 66.667 0.00 0.00 41.95 4.02
1011 1020 2.048603 GCCTGGCAAGGGTGATGAC 61.049 63.158 15.17 0.00 44.67 3.06
1020 1029 4.379243 ACGAGACGGCCTGGCAAG 62.379 66.667 22.05 16.00 0.00 4.01
1021 1030 4.373116 GACGAGACGGCCTGGCAA 62.373 66.667 22.05 0.00 0.00 4.52
1026 1035 0.107116 AGAGTATGACGAGACGGCCT 60.107 55.000 0.00 0.00 31.60 5.19
1048 1057 2.950673 GTTGCCGGTTTGCGATGA 59.049 55.556 1.90 0.00 0.00 2.92
1074 1083 2.730672 GCCTACACGTTCAGCAGCG 61.731 63.158 0.00 0.00 0.00 5.18
1128 1137 1.404843 AGCTATCCGTGGAGAGAACC 58.595 55.000 14.50 0.00 35.67 3.62
1139 1148 4.879598 ACTTACGGGATTAAAGCTATCCG 58.120 43.478 7.73 7.58 42.08 4.18
1161 1170 8.933653 GGATGGATTTTTATTTAGGATTCCCAA 58.066 33.333 0.00 0.00 33.88 4.12
1175 1184 4.780554 GGAGGGTTTTGGGATGGATTTTTA 59.219 41.667 0.00 0.00 0.00 1.52
1181 1190 0.778078 TGGGAGGGTTTTGGGATGGA 60.778 55.000 0.00 0.00 0.00 3.41
1221 1230 0.530744 AATAAGTGAGCGGCGAGTGA 59.469 50.000 12.98 0.00 0.00 3.41
1222 1231 1.061131 CAAATAAGTGAGCGGCGAGTG 59.939 52.381 12.98 0.00 0.00 3.51
1238 1247 2.431782 AGGCAAACAACTCTGCACAAAT 59.568 40.909 0.00 0.00 40.46 2.32
1331 1340 5.479124 AGCAAAAGAGGCATTTCAATCTT 57.521 34.783 0.00 0.00 33.51 2.40
1343 1352 2.076863 CCGACTACCAAGCAAAAGAGG 58.923 52.381 0.00 0.00 0.00 3.69
1347 1356 2.158871 ACAGTCCGACTACCAAGCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
1361 1370 4.788100 CGCAATTAGAAAATCAACAGTCCG 59.212 41.667 0.00 0.00 0.00 4.79
1362 1371 5.938322 TCGCAATTAGAAAATCAACAGTCC 58.062 37.500 0.00 0.00 0.00 3.85
1391 1403 2.870175 TCCAAAAATCCTGCCGAAAGA 58.130 42.857 0.00 0.00 0.00 2.52
1392 1404 3.658757 TTCCAAAAATCCTGCCGAAAG 57.341 42.857 0.00 0.00 0.00 2.62
1396 1408 3.447229 AGGTATTTCCAAAAATCCTGCCG 59.553 43.478 0.00 0.00 36.49 5.69
1439 1451 1.097232 CAATCCTTTCAGCCATCGCA 58.903 50.000 0.00 0.00 37.52 5.10
1468 1480 1.003718 AGTAGCCGAGCCCAAACAC 60.004 57.895 0.00 0.00 0.00 3.32
1483 1495 3.910989 TGCACTCCCTATAGCTTGAGTA 58.089 45.455 13.97 2.42 36.36 2.59
1502 1514 2.191128 AGTCTGAAGACCCACATTGC 57.809 50.000 6.84 0.00 45.85 3.56
1549 1562 8.594687 CATAAACCATTGTATTAAAAGCAGCAC 58.405 33.333 0.00 0.00 0.00 4.40
1627 1640 9.905713 TTGCTAGAACTTTGGAATGTTATATCT 57.094 29.630 0.00 0.00 0.00 1.98
1636 1649 5.769662 TCACATGTTGCTAGAACTTTGGAAT 59.230 36.000 0.00 0.00 0.00 3.01
1669 1682 7.462571 AACCATATACTTCTTTTCCAACACC 57.537 36.000 0.00 0.00 0.00 4.16
1691 1704 7.602517 ACAGATGATAGAGTGTTGCTAAAAC 57.397 36.000 0.00 0.00 0.00 2.43
1694 1707 8.621532 AAAAACAGATGATAGAGTGTTGCTAA 57.378 30.769 0.00 0.00 33.45 3.09
1703 1716 6.176183 ACCACCAGAAAAACAGATGATAGAG 58.824 40.000 0.00 0.00 0.00 2.43
1730 1743 3.711863 TCCCTCCCAAAATCATCCTTTG 58.288 45.455 0.00 0.00 34.24 2.77
1802 1815 4.877823 TGCGACATTTTCTCAATCTGCTAT 59.122 37.500 0.00 0.00 0.00 2.97
1958 1973 3.767287 CATGGCTAATCATGCAGCG 57.233 52.632 0.00 0.00 38.16 5.18
1996 2011 6.753107 AAACAAACATGGTACTATAGCCAC 57.247 37.500 0.00 0.00 37.62 5.01
2016 2033 7.598869 ACTTCCTTGAAAAACAGTGAGAAAAAC 59.401 33.333 0.00 0.00 0.00 2.43
2021 2038 5.745227 AGACTTCCTTGAAAAACAGTGAGA 58.255 37.500 0.00 0.00 0.00 3.27
2022 2039 6.442513 AAGACTTCCTTGAAAAACAGTGAG 57.557 37.500 0.00 0.00 32.92 3.51
2168 2201 4.057432 CGTTTGGCACCAAGATCAAAAAT 58.943 39.130 1.79 0.00 37.24 1.82
2259 2292 8.215736 TCCAGAGATCACACATGAATATCAATT 58.784 33.333 0.00 0.00 38.69 2.32
2346 2402 4.439289 GCCCACAAATAAATGCTCTCTGTC 60.439 45.833 0.00 0.00 0.00 3.51
2347 2403 3.445096 GCCCACAAATAAATGCTCTCTGT 59.555 43.478 0.00 0.00 0.00 3.41
2348 2404 3.444742 TGCCCACAAATAAATGCTCTCTG 59.555 43.478 0.00 0.00 0.00 3.35
2603 2660 7.168219 AGTAAACATTAGCAAGATTGAGACCA 58.832 34.615 0.00 0.00 0.00 4.02
2751 2815 5.731957 TTGTAACATGTGTAGTGGCTCTA 57.268 39.130 0.00 0.00 0.00 2.43
2760 2824 7.065683 CAGAGCATACCATTTGTAACATGTGTA 59.934 37.037 0.00 0.00 31.94 2.90
2944 3008 9.660180 AGTTTCTGAGGAGTAAATAATTCAGTC 57.340 33.333 0.00 0.00 34.97 3.51
3064 3138 3.044986 TGTACAGCGAGTCGTACAAAAC 58.955 45.455 15.08 6.22 43.67 2.43
3076 3150 5.761165 TGCATAATACTACTGTACAGCGA 57.239 39.130 22.90 10.18 0.00 4.93
3077 3151 7.201359 GCTTATGCATAATACTACTGTACAGCG 60.201 40.741 22.90 15.90 39.41 5.18
3078 3152 7.815068 AGCTTATGCATAATACTACTGTACAGC 59.185 37.037 22.90 13.55 42.74 4.40
3086 3161 6.166279 TGCAGGAGCTTATGCATAATACTAC 58.834 40.000 19.17 18.52 46.97 2.73
3117 3195 4.729918 CCAGGCTCCAGCACCCAC 62.730 72.222 0.03 0.00 44.36 4.61
3124 3202 0.035630 CTTGTCCTTCCAGGCTCCAG 60.036 60.000 0.00 0.00 34.61 3.86
3129 3207 0.823356 TTGCACTTGTCCTTCCAGGC 60.823 55.000 0.00 0.00 34.61 4.85
3130 3208 0.954452 GTTGCACTTGTCCTTCCAGG 59.046 55.000 0.00 0.00 36.46 4.45
3465 3750 3.734463 TCAAAGAACATACAGAACGCCA 58.266 40.909 0.00 0.00 0.00 5.69
3765 4084 6.808212 GCAATATAAATGAGTGTGCACAAAGT 59.192 34.615 23.59 9.41 0.00 2.66
3852 4186 0.249120 TTGGCACGCACTACTGCTAT 59.751 50.000 0.00 0.00 41.77 2.97
4139 4602 1.301479 ACCCTTCGTTCGAACCTGC 60.301 57.895 22.07 0.00 0.00 4.85
4151 4614 1.617322 GAACTTTGTCCCCACCCTTC 58.383 55.000 0.00 0.00 0.00 3.46
4220 4707 1.406069 CGCTATGGAGAAGCTGGTGTT 60.406 52.381 0.00 0.00 37.85 3.32
4224 4711 3.883830 ATATCGCTATGGAGAAGCTGG 57.116 47.619 0.00 0.00 37.85 4.85
4236 4723 4.037565 TCTTGCCTCGAAGAAATATCGCTA 59.962 41.667 0.00 0.00 40.04 4.26
4237 4724 2.890808 TGCCTCGAAGAAATATCGCT 57.109 45.000 0.00 0.00 40.04 4.93
4322 4810 3.869140 GCATCAAGGATATCAGAGGCCAG 60.869 52.174 5.01 0.00 32.21 4.85
4467 5047 1.202770 ACAGTCCGGTTCTCCTTTTGG 60.203 52.381 0.00 0.00 42.21 3.28
4511 5091 6.182507 AGTTGGTGTTAGAATCAGTGGTAA 57.817 37.500 0.00 0.00 0.00 2.85
4513 5093 4.706842 AGTTGGTGTTAGAATCAGTGGT 57.293 40.909 0.00 0.00 0.00 4.16
4523 5103 3.632145 ACCTGCAAGAAAGTTGGTGTTAG 59.368 43.478 0.00 0.00 34.07 2.34
4601 5251 2.513897 GCACCGAGGGGAAATCCG 60.514 66.667 0.00 0.00 36.71 4.18
4749 5658 2.735772 ATGCCGCGTCCTCTTCCAT 61.736 57.895 4.92 0.00 0.00 3.41
4861 5884 1.212455 CGTCTGCGTGTAAGTGCACA 61.212 55.000 21.04 0.00 39.19 4.57
4988 6013 2.046217 GGCCCTTTCCTCCACGAC 60.046 66.667 0.00 0.00 0.00 4.34
5031 6059 5.181245 CCGAAAAAGAATAGAACAGGAGCAA 59.819 40.000 0.00 0.00 0.00 3.91
5032 6060 4.695455 CCGAAAAAGAATAGAACAGGAGCA 59.305 41.667 0.00 0.00 0.00 4.26
5033 6061 4.437524 GCCGAAAAAGAATAGAACAGGAGC 60.438 45.833 0.00 0.00 0.00 4.70
5050 6078 3.478857 TCTTGGTTTCTACAGCCGAAA 57.521 42.857 0.00 0.00 0.00 3.46
5145 6173 1.959226 GCAGTGAAGAAACCGCCGA 60.959 57.895 0.00 0.00 0.00 5.54
5159 6187 2.433970 GCTGATCCCTAGAGAAAGCAGT 59.566 50.000 7.25 0.00 32.53 4.40
5164 6192 2.311463 CGAGGCTGATCCCTAGAGAAA 58.689 52.381 0.00 0.00 34.69 2.52
5256 6284 2.924903 CGACGTATATCGCAGCCTTAA 58.075 47.619 0.00 0.00 44.19 1.85
5450 6478 3.167485 TGCTTGGAAATCTTGCTTGGAT 58.833 40.909 0.00 0.00 0.00 3.41
5458 6486 5.930569 GCTCAAAATCTTGCTTGGAAATCTT 59.069 36.000 0.00 0.00 32.14 2.40
5459 6487 5.476614 GCTCAAAATCTTGCTTGGAAATCT 58.523 37.500 0.00 0.00 32.14 2.40
5460 6488 4.628766 GGCTCAAAATCTTGCTTGGAAATC 59.371 41.667 0.00 0.00 32.14 2.17
5461 6489 4.040706 TGGCTCAAAATCTTGCTTGGAAAT 59.959 37.500 0.00 0.00 32.14 2.17
5462 6490 3.387374 TGGCTCAAAATCTTGCTTGGAAA 59.613 39.130 0.00 0.00 32.14 3.13
5463 6491 2.964464 TGGCTCAAAATCTTGCTTGGAA 59.036 40.909 0.00 0.00 32.14 3.53
5464 6492 2.297033 GTGGCTCAAAATCTTGCTTGGA 59.703 45.455 0.00 0.00 32.14 3.53
5465 6493 2.298163 AGTGGCTCAAAATCTTGCTTGG 59.702 45.455 0.00 0.00 32.14 3.61
5466 6494 3.314553 CAGTGGCTCAAAATCTTGCTTG 58.685 45.455 0.00 0.00 32.14 4.01
5467 6495 2.288640 GCAGTGGCTCAAAATCTTGCTT 60.289 45.455 0.00 0.00 36.96 3.91
5468 6496 1.271656 GCAGTGGCTCAAAATCTTGCT 59.728 47.619 0.00 0.00 36.96 3.91
5469 6497 1.706443 GCAGTGGCTCAAAATCTTGC 58.294 50.000 0.00 0.00 36.96 4.01
5508 6538 2.627933 ACCAAACAGGGCCTAGTCTAA 58.372 47.619 5.28 0.00 43.89 2.10
5513 6543 2.514458 ATGAACCAAACAGGGCCTAG 57.486 50.000 5.28 3.22 43.89 3.02
5514 6544 3.332485 ACTTATGAACCAAACAGGGCCTA 59.668 43.478 5.28 0.00 43.89 3.93
5515 6545 2.110011 ACTTATGAACCAAACAGGGCCT 59.890 45.455 0.00 0.00 43.89 5.19
5516 6546 2.492088 GACTTATGAACCAAACAGGGCC 59.508 50.000 0.00 0.00 43.89 5.80
5517 6547 2.492088 GGACTTATGAACCAAACAGGGC 59.508 50.000 0.00 0.00 43.89 5.19
5518 6548 4.034285 AGGACTTATGAACCAAACAGGG 57.966 45.455 0.00 0.00 43.89 4.45
5519 6549 5.045869 TCCTAGGACTTATGAACCAAACAGG 60.046 44.000 7.62 0.00 45.67 4.00
5520 6550 5.875359 GTCCTAGGACTTATGAACCAAACAG 59.125 44.000 31.12 0.00 41.57 3.16
5521 6551 5.801380 GTCCTAGGACTTATGAACCAAACA 58.199 41.667 31.12 0.00 41.57 2.83
5547 6577 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
5548 6578 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
5549 6579 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
5550 6580 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
5551 6581 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
5552 6582 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
5553 6583 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
5554 6584 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
5555 6585 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
5556 6586 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
5557 6587 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
5558 6588 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
5559 6589 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
5560 6590 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
5561 6591 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
5562 6592 7.311486 GGACTTTTTAGGGACTTGGGACTTATA 60.311 40.741 0.00 0.00 41.75 0.98
5563 6593 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
5564 6594 5.221986 GGACTTTTTAGGGACTTGGGACTTA 60.222 44.000 0.00 0.00 41.75 2.24
5565 6595 4.447325 GGACTTTTTAGGGACTTGGGACTT 60.447 45.833 0.00 0.00 41.75 3.01
5566 6596 3.074094 GGACTTTTTAGGGACTTGGGACT 59.926 47.826 0.00 0.00 41.75 3.85
5567 6597 3.418995 GGACTTTTTAGGGACTTGGGAC 58.581 50.000 0.00 0.00 41.75 4.46
5568 6598 2.377531 GGGACTTTTTAGGGACTTGGGA 59.622 50.000 0.00 0.00 41.75 4.37
5569 6599 2.378886 AGGGACTTTTTAGGGACTTGGG 59.621 50.000 0.00 0.00 34.75 4.12
5570 6600 3.808834 AGGGACTTTTTAGGGACTTGG 57.191 47.619 0.00 0.00 34.75 3.61
5571 6601 4.288887 AGGTAGGGACTTTTTAGGGACTTG 59.711 45.833 0.00 0.00 39.49 3.16
5572 6602 4.288887 CAGGTAGGGACTTTTTAGGGACTT 59.711 45.833 0.00 0.00 39.49 3.01
5573 6603 3.844804 CAGGTAGGGACTTTTTAGGGACT 59.155 47.826 0.00 0.00 41.75 3.85
5574 6604 3.586174 ACAGGTAGGGACTTTTTAGGGAC 59.414 47.826 0.00 0.00 41.75 4.46
5575 6605 3.878086 ACAGGTAGGGACTTTTTAGGGA 58.122 45.455 0.00 0.00 41.75 4.20
5576 6606 4.652679 AACAGGTAGGGACTTTTTAGGG 57.347 45.455 0.00 0.00 41.75 3.53
5577 6607 4.765339 CCAAACAGGTAGGGACTTTTTAGG 59.235 45.833 0.00 0.00 41.75 2.69
5578 6608 5.959618 CCAAACAGGTAGGGACTTTTTAG 57.040 43.478 0.00 0.00 41.75 1.85
5592 6622 2.938956 AGTCTCAGGAACCAAACAGG 57.061 50.000 0.00 0.00 45.67 4.00
5593 6623 7.162082 ACTTATAAGTCTCAGGAACCAAACAG 58.838 38.462 12.50 0.00 32.86 3.16
5594 6624 7.074653 ACTTATAAGTCTCAGGAACCAAACA 57.925 36.000 12.50 0.00 32.86 2.83
5615 6645 9.448587 AGTTGTAATATGGTCTTATAGGGACTT 57.551 33.333 7.52 0.00 41.75 3.01
5625 6655 9.448587 AGGGACTTATAGTTGTAATATGGTCTT 57.551 33.333 0.00 0.00 27.25 3.01
5636 6666 9.577222 GAGAGTCTTATAGGGACTTATAGTTGT 57.423 37.037 10.43 0.00 43.13 3.32
5637 6667 9.016438 GGAGAGTCTTATAGGGACTTATAGTTG 57.984 40.741 10.43 0.00 43.13 3.16
5638 6668 8.962205 AGGAGAGTCTTATAGGGACTTATAGTT 58.038 37.037 10.43 0.00 43.13 2.24
5639 6669 8.528543 AGGAGAGTCTTATAGGGACTTATAGT 57.471 38.462 10.43 0.00 43.13 2.12
5640 6670 9.238368 CAAGGAGAGTCTTATAGGGACTTATAG 57.762 40.741 10.43 0.00 43.13 1.31
5641 6671 8.956860 TCAAGGAGAGTCTTATAGGGACTTATA 58.043 37.037 10.43 0.00 43.13 0.98
5642 6672 7.827787 TCAAGGAGAGTCTTATAGGGACTTAT 58.172 38.462 10.43 4.90 43.13 1.73
5643 6673 7.129038 TCTCAAGGAGAGTCTTATAGGGACTTA 59.871 40.741 10.43 0.00 43.13 2.24
5644 6674 6.068735 TCTCAAGGAGAGTCTTATAGGGACTT 60.069 42.308 10.43 3.61 43.13 3.01
5645 6675 5.433712 TCTCAAGGAGAGTCTTATAGGGACT 59.566 44.000 9.30 9.30 45.37 3.85
5646 6676 5.697067 TCTCAAGGAGAGTCTTATAGGGAC 58.303 45.833 0.00 0.00 44.98 4.46
5647 6677 5.996271 TCTCAAGGAGAGTCTTATAGGGA 57.004 43.478 0.00 0.00 44.98 4.20
5673 6703 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
5674 6704 5.523588 TGGGCATTTGGGACTTATGAAATA 58.476 37.500 0.00 0.00 0.00 1.40
5675 6705 4.360889 TGGGCATTTGGGACTTATGAAAT 58.639 39.130 0.00 0.00 0.00 2.17
5676 6706 3.784178 TGGGCATTTGGGACTTATGAAA 58.216 40.909 0.00 0.00 0.00 2.69
5677 6707 3.464720 TGGGCATTTGGGACTTATGAA 57.535 42.857 0.00 0.00 0.00 2.57
5678 6708 3.686227 ATGGGCATTTGGGACTTATGA 57.314 42.857 0.00 0.00 0.00 2.15
5679 6709 4.758773 AAATGGGCATTTGGGACTTATG 57.241 40.909 0.00 0.00 39.36 1.90
5680 6710 5.963865 ACTTAAATGGGCATTTGGGACTTAT 59.036 36.000 0.00 0.00 40.83 1.73
5681 6711 5.337788 ACTTAAATGGGCATTTGGGACTTA 58.662 37.500 0.00 0.00 40.83 2.24
5682 6712 4.167319 ACTTAAATGGGCATTTGGGACTT 58.833 39.130 0.00 0.00 40.83 3.01
5683 6713 3.769300 GACTTAAATGGGCATTTGGGACT 59.231 43.478 0.00 0.00 40.83 3.85
5684 6714 3.118775 GGACTTAAATGGGCATTTGGGAC 60.119 47.826 0.00 0.00 40.83 4.46
5685 6715 3.103742 GGACTTAAATGGGCATTTGGGA 58.896 45.455 0.00 0.00 40.83 4.37
5686 6716 3.106827 AGGACTTAAATGGGCATTTGGG 58.893 45.455 0.00 0.00 40.83 4.12
5687 6717 4.824479 AAGGACTTAAATGGGCATTTGG 57.176 40.909 0.00 0.00 40.83 3.28
5688 6718 8.695456 ACTTATAAGGACTTAAATGGGCATTTG 58.305 33.333 16.73 0.00 40.83 2.32
5689 6719 8.838649 ACTTATAAGGACTTAAATGGGCATTT 57.161 30.769 16.73 0.00 42.95 2.32
5690 6720 8.838649 AACTTATAAGGACTTAAATGGGCATT 57.161 30.769 16.73 0.00 0.00 3.56
5691 6721 8.282256 AGAACTTATAAGGACTTAAATGGGCAT 58.718 33.333 16.73 0.00 0.00 4.40
5692 6722 7.639378 AGAACTTATAAGGACTTAAATGGGCA 58.361 34.615 16.73 0.00 0.00 5.36
5693 6723 8.521170 AAGAACTTATAAGGACTTAAATGGGC 57.479 34.615 16.73 0.00 0.00 5.36
5694 6724 9.121658 GGAAGAACTTATAAGGACTTAAATGGG 57.878 37.037 16.73 0.00 0.00 4.00
5695 6725 9.907229 AGGAAGAACTTATAAGGACTTAAATGG 57.093 33.333 16.73 0.00 0.00 3.16
5700 6730 9.720769 CAAACAGGAAGAACTTATAAGGACTTA 57.279 33.333 16.73 0.00 0.00 2.24
5701 6731 7.665974 CCAAACAGGAAGAACTTATAAGGACTT 59.334 37.037 16.73 18.18 41.22 3.01
5702 6732 7.168905 CCAAACAGGAAGAACTTATAAGGACT 58.831 38.462 16.73 11.61 41.22 3.85
5703 6733 6.940867 ACCAAACAGGAAGAACTTATAAGGAC 59.059 38.462 16.73 9.67 41.22 3.85
5704 6734 7.086685 ACCAAACAGGAAGAACTTATAAGGA 57.913 36.000 16.73 0.00 41.22 3.36
5705 6735 7.761038 AACCAAACAGGAAGAACTTATAAGG 57.239 36.000 16.73 0.00 41.22 2.69
5709 6739 9.014297 CATCTAAACCAAACAGGAAGAACTTAT 57.986 33.333 0.00 0.00 41.22 1.73
5710 6740 7.447238 CCATCTAAACCAAACAGGAAGAACTTA 59.553 37.037 0.00 0.00 41.22 2.24
5711 6741 6.265422 CCATCTAAACCAAACAGGAAGAACTT 59.735 38.462 0.00 0.00 41.22 2.66
5712 6742 5.770162 CCATCTAAACCAAACAGGAAGAACT 59.230 40.000 0.00 0.00 41.22 3.01
5713 6743 5.048013 CCCATCTAAACCAAACAGGAAGAAC 60.048 44.000 0.00 0.00 41.22 3.01
5714 6744 5.076873 CCCATCTAAACCAAACAGGAAGAA 58.923 41.667 0.00 0.00 41.22 2.52
5715 6745 4.352595 TCCCATCTAAACCAAACAGGAAGA 59.647 41.667 0.00 0.00 41.22 2.87
5716 6746 4.459337 GTCCCATCTAAACCAAACAGGAAG 59.541 45.833 0.00 0.00 41.22 3.46
5717 6747 4.105697 AGTCCCATCTAAACCAAACAGGAA 59.894 41.667 0.00 0.00 41.22 3.36
5718 6748 3.655777 AGTCCCATCTAAACCAAACAGGA 59.344 43.478 0.00 0.00 41.22 3.86
5719 6749 4.034285 AGTCCCATCTAAACCAAACAGG 57.966 45.455 0.00 0.00 45.67 4.00
5720 6750 7.499232 CCTATAAGTCCCATCTAAACCAAACAG 59.501 40.741 0.00 0.00 0.00 3.16
5721 6751 7.343357 CCTATAAGTCCCATCTAAACCAAACA 58.657 38.462 0.00 0.00 0.00 2.83
5722 6752 6.771267 CCCTATAAGTCCCATCTAAACCAAAC 59.229 42.308 0.00 0.00 0.00 2.93
5723 6753 6.679303 TCCCTATAAGTCCCATCTAAACCAAA 59.321 38.462 0.00 0.00 0.00 3.28
5724 6754 6.100714 GTCCCTATAAGTCCCATCTAAACCAA 59.899 42.308 0.00 0.00 0.00 3.67
5725 6755 5.605488 GTCCCTATAAGTCCCATCTAAACCA 59.395 44.000 0.00 0.00 0.00 3.67
5726 6756 5.845065 AGTCCCTATAAGTCCCATCTAAACC 59.155 44.000 0.00 0.00 0.00 3.27
5727 6757 6.997942 AGTCCCTATAAGTCCCATCTAAAC 57.002 41.667 0.00 0.00 0.00 2.01
5728 6758 8.401955 AAAAGTCCCTATAAGTCCCATCTAAA 57.598 34.615 0.00 0.00 0.00 1.85
5729 6759 8.401955 AAAAAGTCCCTATAAGTCCCATCTAA 57.598 34.615 0.00 0.00 0.00 2.10
5731 6761 6.910259 AAAAAGTCCCTATAAGTCCCATCT 57.090 37.500 0.00 0.00 0.00 2.90
5751 6781 9.081204 GGACTTATTGGTTTAGGGACTTAAAAA 57.919 33.333 0.00 0.00 41.75 1.94
5752 6782 7.670979 GGGACTTATTGGTTTAGGGACTTAAAA 59.329 37.037 0.00 0.00 41.75 1.52
5753 6783 7.018851 AGGGACTTATTGGTTTAGGGACTTAAA 59.981 37.037 0.00 0.00 34.75 1.52
5754 6784 6.506413 AGGGACTTATTGGTTTAGGGACTTAA 59.494 38.462 0.00 0.00 34.75 1.85
5755 6785 6.034003 AGGGACTTATTGGTTTAGGGACTTA 58.966 40.000 0.00 0.00 34.75 2.24
5756 6786 4.856182 AGGGACTTATTGGTTTAGGGACTT 59.144 41.667 0.00 0.00 34.75 3.01
5757 6787 4.227527 CAGGGACTTATTGGTTTAGGGACT 59.772 45.833 0.00 0.00 39.39 3.85
5758 6788 4.226620 TCAGGGACTTATTGGTTTAGGGAC 59.773 45.833 0.00 0.00 34.60 4.46
5759 6789 4.440808 TCAGGGACTTATTGGTTTAGGGA 58.559 43.478 0.00 0.00 34.60 4.20
5760 6790 4.855298 TCAGGGACTTATTGGTTTAGGG 57.145 45.455 0.00 0.00 34.60 3.53
5761 6791 6.492087 TGTTTTCAGGGACTTATTGGTTTAGG 59.508 38.462 0.00 0.00 34.60 2.69
5762 6792 7.519032 TGTTTTCAGGGACTTATTGGTTTAG 57.481 36.000 0.00 0.00 34.60 1.85
5763 6793 7.899648 TTGTTTTCAGGGACTTATTGGTTTA 57.100 32.000 0.00 0.00 34.60 2.01
5764 6794 6.800072 TTGTTTTCAGGGACTTATTGGTTT 57.200 33.333 0.00 0.00 34.60 3.27
5765 6795 6.155393 TGTTTGTTTTCAGGGACTTATTGGTT 59.845 34.615 0.00 0.00 34.60 3.67
5766 6796 5.659079 TGTTTGTTTTCAGGGACTTATTGGT 59.341 36.000 0.00 0.00 34.60 3.67
5767 6797 5.983118 GTGTTTGTTTTCAGGGACTTATTGG 59.017 40.000 0.00 0.00 34.60 3.16
5768 6798 5.983118 GGTGTTTGTTTTCAGGGACTTATTG 59.017 40.000 0.00 0.00 34.60 1.90
5769 6799 5.069914 GGGTGTTTGTTTTCAGGGACTTATT 59.930 40.000 0.00 0.00 34.60 1.40
5770 6800 4.587262 GGGTGTTTGTTTTCAGGGACTTAT 59.413 41.667 0.00 0.00 34.60 1.73
5771 6801 3.955551 GGGTGTTTGTTTTCAGGGACTTA 59.044 43.478 0.00 0.00 34.60 2.24
5772 6802 2.764010 GGGTGTTTGTTTTCAGGGACTT 59.236 45.455 0.00 0.00 34.60 3.01
5773 6803 2.024369 AGGGTGTTTGTTTTCAGGGACT 60.024 45.455 0.00 0.00 43.88 3.85
5774 6804 2.361119 GAGGGTGTTTGTTTTCAGGGAC 59.639 50.000 0.00 0.00 0.00 4.46
5775 6805 2.243736 AGAGGGTGTTTGTTTTCAGGGA 59.756 45.455 0.00 0.00 0.00 4.20
5776 6806 2.666317 AGAGGGTGTTTGTTTTCAGGG 58.334 47.619 0.00 0.00 0.00 4.45
5777 6807 5.534654 TCATTAGAGGGTGTTTGTTTTCAGG 59.465 40.000 0.00 0.00 0.00 3.86
5778 6808 6.633500 TCATTAGAGGGTGTTTGTTTTCAG 57.367 37.500 0.00 0.00 0.00 3.02
5779 6809 6.549364 ACATCATTAGAGGGTGTTTGTTTTCA 59.451 34.615 0.00 0.00 0.00 2.69
5780 6810 6.981722 ACATCATTAGAGGGTGTTTGTTTTC 58.018 36.000 0.00 0.00 0.00 2.29
5781 6811 6.976934 ACATCATTAGAGGGTGTTTGTTTT 57.023 33.333 0.00 0.00 0.00 2.43
5782 6812 6.777580 AGAACATCATTAGAGGGTGTTTGTTT 59.222 34.615 0.00 0.00 33.55 2.83
5783 6813 6.207417 CAGAACATCATTAGAGGGTGTTTGTT 59.793 38.462 0.00 0.00 33.55 2.83
5784 6814 5.707298 CAGAACATCATTAGAGGGTGTTTGT 59.293 40.000 0.00 0.00 33.55 2.83
5785 6815 5.392380 GCAGAACATCATTAGAGGGTGTTTG 60.392 44.000 0.00 0.00 33.55 2.93
5786 6816 4.702131 GCAGAACATCATTAGAGGGTGTTT 59.298 41.667 0.00 0.00 33.55 2.83
5787 6817 4.018960 AGCAGAACATCATTAGAGGGTGTT 60.019 41.667 0.00 0.00 35.87 3.32
5788 6818 3.521126 AGCAGAACATCATTAGAGGGTGT 59.479 43.478 0.00 0.00 0.00 4.16
5789 6819 4.148128 AGCAGAACATCATTAGAGGGTG 57.852 45.455 0.00 0.00 0.00 4.61
5790 6820 6.506538 AATAGCAGAACATCATTAGAGGGT 57.493 37.500 0.00 0.00 0.00 4.34
5791 6821 8.153550 AGTTAATAGCAGAACATCATTAGAGGG 58.846 37.037 0.00 0.00 0.00 4.30
5945 7265 0.822944 TGGTTGTGTGTGCCATCTGG 60.823 55.000 0.00 0.00 38.53 3.86
5982 7302 0.239347 CCGCAAGAGCACTTTCAAGG 59.761 55.000 0.00 0.00 42.27 3.61
5999 7319 2.053627 GTTGTTTTTCAGCATCAGCCG 58.946 47.619 0.00 0.00 43.56 5.52
6237 7574 1.962807 TGTTTCAGGTTTGCAGATGGG 59.037 47.619 0.00 0.00 0.00 4.00
6238 7575 3.731652 TTGTTTCAGGTTTGCAGATGG 57.268 42.857 0.00 0.00 0.00 3.51
6245 7582 5.571277 CATTTTGGCTTTGTTTCAGGTTTG 58.429 37.500 0.00 0.00 0.00 2.93
6326 7667 3.369576 GGCCTCCTCAGTTTTTCTACGAT 60.370 47.826 0.00 0.00 0.00 3.73
6329 7670 3.339141 CAGGCCTCCTCAGTTTTTCTAC 58.661 50.000 0.00 0.00 0.00 2.59
6344 7685 3.870538 TCTTGATATTCATGCAGGCCT 57.129 42.857 0.00 0.00 0.00 5.19
6345 7686 3.192844 CCATCTTGATATTCATGCAGGCC 59.807 47.826 0.00 0.00 0.00 5.19
6346 7687 3.825014 ACCATCTTGATATTCATGCAGGC 59.175 43.478 0.00 0.00 0.00 4.85
6347 7688 4.321008 GCACCATCTTGATATTCATGCAGG 60.321 45.833 0.00 0.00 28.55 4.85
6348 7689 4.519350 AGCACCATCTTGATATTCATGCAG 59.481 41.667 0.00 0.00 29.94 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.