Multiple sequence alignment - TraesCS1D01G227600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G227600 chr1D 100.000 2975 0 0 1 2975 315975313 315978287 0.000000e+00 5494.0
1 TraesCS1D01G227600 chr1D 96.875 32 0 1 1277 1308 19015448 19015418 5.000000e-03 52.8
2 TraesCS1D01G227600 chr1B 91.801 1183 50 18 1514 2665 428067268 428068434 0.000000e+00 1604.0
3 TraesCS1D01G227600 chr1B 87.958 573 42 12 3 561 428066102 428066661 0.000000e+00 651.0
4 TraesCS1D01G227600 chr1B 79.182 538 58 30 737 1246 428066672 428067183 1.030000e-84 324.0
5 TraesCS1D01G227600 chr1B 82.500 80 5 6 2472 2549 7924342 7924414 8.900000e-06 62.1
6 TraesCS1D01G227600 chr1A 83.180 1522 124 67 737 2209 396425318 396426756 0.000000e+00 1271.0
7 TraesCS1D01G227600 chr1A 89.721 574 38 10 1 560 396424738 396425304 0.000000e+00 713.0
8 TraesCS1D01G227600 chr1A 84.987 393 32 11 2387 2773 396426772 396427143 1.010000e-99 374.0
9 TraesCS1D01G227600 chr1A 94.937 158 8 0 2818 2975 396427160 396427317 6.370000e-62 248.0
10 TraesCS1D01G227600 chr1A 94.286 35 1 1 2317 2351 396426751 396426784 5.000000e-03 52.8
11 TraesCS1D01G227600 chr3D 84.545 110 16 1 1274 1383 457029763 457029655 1.130000e-19 108.0
12 TraesCS1D01G227600 chr3D 94.444 36 1 1 1274 1309 559132005 559132039 1.000000e-03 54.7
13 TraesCS1D01G227600 chr5B 87.097 93 3 5 2457 2549 545083491 545083408 2.440000e-16 97.1
14 TraesCS1D01G227600 chr3A 82.796 93 8 4 2458 2549 652027622 652027537 3.180000e-10 76.8
15 TraesCS1D01G227600 chr3A 97.222 36 1 0 2509 2544 592213366 592213401 8.900000e-06 62.1
16 TraesCS1D01G227600 chr7D 80.180 111 9 10 2455 2562 1897759 1897859 1.480000e-08 71.3
17 TraesCS1D01G227600 chr2B 81.818 88 9 2 2451 2538 269375171 269375091 1.910000e-07 67.6
18 TraesCS1D01G227600 chr2A 95.000 40 2 0 2511 2550 25257494 25257455 2.480000e-06 63.9
19 TraesCS1D01G227600 chr2A 95.000 40 2 0 2511 2550 25323955 25323916 2.480000e-06 63.9
20 TraesCS1D01G227600 chr6D 94.737 38 2 0 1277 1314 57509802 57509839 3.200000e-05 60.2
21 TraesCS1D01G227600 chr6D 94.444 36 1 1 1274 1309 12131373 12131407 1.000000e-03 54.7
22 TraesCS1D01G227600 chr6D 94.444 36 1 1 1274 1309 335061573 335061607 1.000000e-03 54.7
23 TraesCS1D01G227600 chr6D 94.444 36 1 1 1274 1309 454663138 454663104 1.000000e-03 54.7
24 TraesCS1D01G227600 chr5A 100.000 30 0 0 1274 1303 691814785 691814814 4.140000e-04 56.5
25 TraesCS1D01G227600 chr4A 100.000 28 0 0 2476 2503 137967329 137967356 5.000000e-03 52.8
26 TraesCS1D01G227600 chr4A 100.000 28 0 0 2476 2503 137972480 137972453 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G227600 chr1D 315975313 315978287 2974 False 5494.000000 5494 100.000000 1 2975 1 chr1D.!!$F1 2974
1 TraesCS1D01G227600 chr1B 428066102 428068434 2332 False 859.666667 1604 86.313667 3 2665 3 chr1B.!!$F2 2662
2 TraesCS1D01G227600 chr1A 396424738 396427317 2579 False 531.760000 1271 89.422200 1 2975 5 chr1A.!!$F1 2974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
877 903 0.035458 CAAGGCAGGGAACGTTCTCT 59.965 55.0 25.07 25.07 38.96 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2837 2949 0.038159 CTATAGGGCCGTAGCTGTGC 60.038 60.0 11.42 0.0 39.73 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 148 2.159517 GGCAGAGCCGTTTAGTGATTTG 60.160 50.000 0.00 0.00 39.62 2.32
147 154 6.092122 CAGAGCCGTTTAGTGATTTGATACAA 59.908 38.462 0.00 0.00 0.00 2.41
175 182 9.737427 TTTGTTATTTTGCGAAGATTAAGTTGA 57.263 25.926 0.00 0.00 0.00 3.18
294 304 1.871039 GAAGCTGGCGTAACAAGTGAA 59.129 47.619 0.00 0.00 0.00 3.18
377 388 1.610522 CAAAAGTTGGGAGTCCTGCAG 59.389 52.381 9.58 6.78 0.00 4.41
392 403 0.701147 TGCAGAGAGAGGAGGTCAGA 59.299 55.000 0.00 0.00 0.00 3.27
405 416 5.463154 AGGAGGTCAGATTAGAGTAGCAAT 58.537 41.667 0.00 0.00 0.00 3.56
406 417 6.615617 AGGAGGTCAGATTAGAGTAGCAATA 58.384 40.000 0.00 0.00 0.00 1.90
407 418 7.245292 AGGAGGTCAGATTAGAGTAGCAATAT 58.755 38.462 0.00 0.00 0.00 1.28
412 423 9.717942 GGTCAGATTAGAGTAGCAATATCAAAT 57.282 33.333 0.00 0.00 0.00 2.32
414 425 9.212641 TCAGATTAGAGTAGCAATATCAAATGC 57.787 33.333 0.00 0.00 42.87 3.56
415 426 8.996271 CAGATTAGAGTAGCAATATCAAATGCA 58.004 33.333 0.00 0.00 44.95 3.96
416 427 9.217278 AGATTAGAGTAGCAATATCAAATGCAG 57.783 33.333 0.00 0.00 44.95 4.41
417 428 9.212641 GATTAGAGTAGCAATATCAAATGCAGA 57.787 33.333 0.00 0.00 44.95 4.26
419 430 6.590068 AGAGTAGCAATATCAAATGCAGACT 58.410 36.000 0.00 3.21 44.95 3.24
420 431 7.052873 AGAGTAGCAATATCAAATGCAGACTT 58.947 34.615 0.00 0.00 44.95 3.01
421 432 7.012138 AGAGTAGCAATATCAAATGCAGACTTG 59.988 37.037 0.00 0.00 44.95 3.16
422 433 5.909621 AGCAATATCAAATGCAGACTTGT 57.090 34.783 0.00 0.00 44.95 3.16
423 434 6.276832 AGCAATATCAAATGCAGACTTGTT 57.723 33.333 0.00 0.00 44.95 2.83
424 435 7.395190 AGCAATATCAAATGCAGACTTGTTA 57.605 32.000 0.00 0.00 44.95 2.41
431 442 1.155889 TGCAGACTTGTTACGCATGG 58.844 50.000 0.00 0.00 0.00 3.66
436 447 1.732259 GACTTGTTACGCATGGACCTG 59.268 52.381 0.00 0.00 0.00 4.00
460 471 0.179234 TTTTCCTCCGGCGCATATCA 59.821 50.000 10.83 0.00 0.00 2.15
491 503 1.879380 TGAAACTTGATGCCGGTGAAG 59.121 47.619 1.90 2.82 0.00 3.02
494 506 1.237285 ACTTGATGCCGGTGAAGTGC 61.237 55.000 1.90 0.00 0.00 4.40
498 510 0.598065 GATGCCGGTGAAGTGCTTTT 59.402 50.000 1.90 0.00 0.00 2.27
501 513 0.040067 GCCGGTGAAGTGCTTTTCTG 60.040 55.000 1.90 0.00 0.00 3.02
561 582 5.010213 GCACCTAGAGGAGTCGAAATATTCT 59.990 44.000 1.60 0.00 38.94 2.40
562 583 6.674066 CACCTAGAGGAGTCGAAATATTCTC 58.326 44.000 1.60 0.00 38.94 2.87
564 585 6.263617 ACCTAGAGGAGTCGAAATATTCTCAC 59.736 42.308 1.60 0.00 38.94 3.51
565 586 5.176407 AGAGGAGTCGAAATATTCTCACG 57.824 43.478 0.00 0.00 0.00 4.35
568 589 5.341617 AGGAGTCGAAATATTCTCACGAAC 58.658 41.667 0.00 0.00 34.91 3.95
569 590 5.125739 AGGAGTCGAAATATTCTCACGAACT 59.874 40.000 0.00 0.00 34.91 3.01
570 591 5.456173 GGAGTCGAAATATTCTCACGAACTC 59.544 44.000 0.00 0.00 34.91 3.01
571 592 6.197364 AGTCGAAATATTCTCACGAACTCT 57.803 37.500 0.00 0.00 34.91 3.24
572 593 6.622549 AGTCGAAATATTCTCACGAACTCTT 58.377 36.000 0.00 0.00 34.91 2.85
573 594 6.528423 AGTCGAAATATTCTCACGAACTCTTG 59.472 38.462 0.00 0.00 34.91 3.02
574 595 6.527023 GTCGAAATATTCTCACGAACTCTTGA 59.473 38.462 0.00 0.00 34.91 3.02
575 596 6.527023 TCGAAATATTCTCACGAACTCTTGAC 59.473 38.462 0.00 0.00 30.67 3.18
576 597 6.308041 CGAAATATTCTCACGAACTCTTGACA 59.692 38.462 0.00 0.00 30.67 3.58
577 598 7.009631 CGAAATATTCTCACGAACTCTTGACAT 59.990 37.037 0.00 0.00 30.67 3.06
578 599 9.302345 GAAATATTCTCACGAACTCTTGACATA 57.698 33.333 0.00 0.00 30.67 2.29
579 600 9.823647 AAATATTCTCACGAACTCTTGACATAT 57.176 29.630 0.00 0.00 30.67 1.78
581 602 9.900710 ATATTCTCACGAACTCTTGACATATAC 57.099 33.333 0.00 0.00 30.67 1.47
582 603 6.132791 TCTCACGAACTCTTGACATATACC 57.867 41.667 0.00 0.00 0.00 2.73
583 604 5.650703 TCTCACGAACTCTTGACATATACCA 59.349 40.000 0.00 0.00 0.00 3.25
584 605 6.152154 TCTCACGAACTCTTGACATATACCAA 59.848 38.462 0.00 0.00 0.00 3.67
585 606 6.873997 TCACGAACTCTTGACATATACCAAT 58.126 36.000 0.00 0.00 0.00 3.16
586 607 6.978659 TCACGAACTCTTGACATATACCAATC 59.021 38.462 0.00 0.00 0.00 2.67
587 608 6.980978 CACGAACTCTTGACATATACCAATCT 59.019 38.462 0.00 0.00 0.00 2.40
588 609 7.168302 CACGAACTCTTGACATATACCAATCTC 59.832 40.741 0.00 0.00 0.00 2.75
589 610 7.068839 ACGAACTCTTGACATATACCAATCTCT 59.931 37.037 0.00 0.00 0.00 3.10
590 611 7.593273 CGAACTCTTGACATATACCAATCTCTC 59.407 40.741 0.00 0.00 0.00 3.20
591 612 8.546083 AACTCTTGACATATACCAATCTCTCT 57.454 34.615 0.00 0.00 0.00 3.10
592 613 8.177119 ACTCTTGACATATACCAATCTCTCTC 57.823 38.462 0.00 0.00 0.00 3.20
593 614 8.004215 ACTCTTGACATATACCAATCTCTCTCT 58.996 37.037 0.00 0.00 0.00 3.10
594 615 8.402798 TCTTGACATATACCAATCTCTCTCTC 57.597 38.462 0.00 0.00 0.00 3.20
595 616 8.224025 TCTTGACATATACCAATCTCTCTCTCT 58.776 37.037 0.00 0.00 0.00 3.10
596 617 7.994425 TGACATATACCAATCTCTCTCTCTC 57.006 40.000 0.00 0.00 0.00 3.20
597 618 7.754624 TGACATATACCAATCTCTCTCTCTCT 58.245 38.462 0.00 0.00 0.00 3.10
598 619 7.882791 TGACATATACCAATCTCTCTCTCTCTC 59.117 40.741 0.00 0.00 0.00 3.20
599 620 7.988937 ACATATACCAATCTCTCTCTCTCTCT 58.011 38.462 0.00 0.00 0.00 3.10
600 621 8.103305 ACATATACCAATCTCTCTCTCTCTCTC 58.897 40.741 0.00 0.00 0.00 3.20
601 622 6.770286 ATACCAATCTCTCTCTCTCTCTCT 57.230 41.667 0.00 0.00 0.00 3.10
602 623 5.041191 ACCAATCTCTCTCTCTCTCTCTC 57.959 47.826 0.00 0.00 0.00 3.20
603 624 4.723789 ACCAATCTCTCTCTCTCTCTCTCT 59.276 45.833 0.00 0.00 0.00 3.10
604 625 5.163258 ACCAATCTCTCTCTCTCTCTCTCTC 60.163 48.000 0.00 0.00 0.00 3.20
605 626 5.071519 CCAATCTCTCTCTCTCTCTCTCTCT 59.928 48.000 0.00 0.00 0.00 3.10
606 627 6.222389 CAATCTCTCTCTCTCTCTCTCTCTC 58.778 48.000 0.00 0.00 0.00 3.20
607 628 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
608 629 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
609 630 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
610 631 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
611 632 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
612 633 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
613 634 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
614 635 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
615 636 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
616 637 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
617 638 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
618 639 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
619 640 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
620 641 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
621 642 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
622 643 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
623 644 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
624 645 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
625 646 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
626 647 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
627 648 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
628 649 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
629 650 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
630 651 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
631 652 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
632 653 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
633 654 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
634 655 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
635 656 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
636 657 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
637 658 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
638 659 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
639 660 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
640 661 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
641 662 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
642 663 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
643 664 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
644 665 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
645 666 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
646 667 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
647 668 5.960811 TCTCTCTCTCTCTCTCTCTCTCTTT 59.039 44.000 0.00 0.00 0.00 2.52
648 669 7.126061 TCTCTCTCTCTCTCTCTCTCTCTTTA 58.874 42.308 0.00 0.00 0.00 1.85
649 670 7.786943 TCTCTCTCTCTCTCTCTCTCTCTTTAT 59.213 40.741 0.00 0.00 0.00 1.40
650 671 9.083422 CTCTCTCTCTCTCTCTCTCTCTTTATA 57.917 40.741 0.00 0.00 0.00 0.98
651 672 9.434275 TCTCTCTCTCTCTCTCTCTCTTTATAA 57.566 37.037 0.00 0.00 0.00 0.98
652 673 9.482627 CTCTCTCTCTCTCTCTCTCTTTATAAC 57.517 40.741 0.00 0.00 0.00 1.89
653 674 8.988060 TCTCTCTCTCTCTCTCTCTTTATAACA 58.012 37.037 0.00 0.00 0.00 2.41
654 675 9.613428 CTCTCTCTCTCTCTCTCTTTATAACAA 57.387 37.037 0.00 0.00 0.00 2.83
655 676 9.613428 TCTCTCTCTCTCTCTCTTTATAACAAG 57.387 37.037 0.00 0.00 0.00 3.16
656 677 8.746052 TCTCTCTCTCTCTCTTTATAACAAGG 57.254 38.462 0.00 0.00 0.00 3.61
657 678 8.553153 TCTCTCTCTCTCTCTTTATAACAAGGA 58.447 37.037 0.00 0.00 0.00 3.36
658 679 9.354673 CTCTCTCTCTCTCTTTATAACAAGGAT 57.645 37.037 0.00 0.00 0.00 3.24
680 701 9.829507 AGGATAAGAGAATTTACAGATTCTGTG 57.170 33.333 26.01 0.53 45.01 3.66
681 702 9.606631 GGATAAGAGAATTTACAGATTCTGTGT 57.393 33.333 26.01 11.38 45.01 3.72
684 705 8.908786 AAGAGAATTTACAGATTCTGTGTTGA 57.091 30.769 26.01 11.34 45.01 3.18
685 706 9.512588 AAGAGAATTTACAGATTCTGTGTTGAT 57.487 29.630 26.01 12.84 45.01 2.57
686 707 8.944029 AGAGAATTTACAGATTCTGTGTTGATG 58.056 33.333 26.01 0.00 45.01 3.07
687 708 8.627208 AGAATTTACAGATTCTGTGTTGATGT 57.373 30.769 26.01 7.50 45.01 3.06
688 709 9.071276 AGAATTTACAGATTCTGTGTTGATGTT 57.929 29.630 26.01 12.30 45.01 2.71
693 714 7.383102 ACAGATTCTGTGTTGATGTTATTCC 57.617 36.000 18.35 0.00 43.63 3.01
694 715 6.092670 ACAGATTCTGTGTTGATGTTATTCCG 59.907 38.462 18.35 0.00 43.63 4.30
695 716 6.092670 CAGATTCTGTGTTGATGTTATTCCGT 59.907 38.462 5.46 0.00 0.00 4.69
696 717 5.605564 TTCTGTGTTGATGTTATTCCGTG 57.394 39.130 0.00 0.00 0.00 4.94
697 718 4.637276 TCTGTGTTGATGTTATTCCGTGT 58.363 39.130 0.00 0.00 0.00 4.49
698 719 5.060506 TCTGTGTTGATGTTATTCCGTGTT 58.939 37.500 0.00 0.00 0.00 3.32
699 720 6.224584 TCTGTGTTGATGTTATTCCGTGTTA 58.775 36.000 0.00 0.00 0.00 2.41
700 721 6.876789 TCTGTGTTGATGTTATTCCGTGTTAT 59.123 34.615 0.00 0.00 0.00 1.89
701 722 6.836953 TGTGTTGATGTTATTCCGTGTTATG 58.163 36.000 0.00 0.00 0.00 1.90
702 723 5.737290 GTGTTGATGTTATTCCGTGTTATGC 59.263 40.000 0.00 0.00 0.00 3.14
703 724 5.163703 TGTTGATGTTATTCCGTGTTATGCC 60.164 40.000 0.00 0.00 0.00 4.40
704 725 4.518249 TGATGTTATTCCGTGTTATGCCA 58.482 39.130 0.00 0.00 0.00 4.92
705 726 4.334203 TGATGTTATTCCGTGTTATGCCAC 59.666 41.667 0.00 0.00 0.00 5.01
706 727 3.011119 TGTTATTCCGTGTTATGCCACC 58.989 45.455 0.00 0.00 31.47 4.61
707 728 3.011119 GTTATTCCGTGTTATGCCACCA 58.989 45.455 0.00 0.00 31.47 4.17
708 729 1.750193 ATTCCGTGTTATGCCACCAG 58.250 50.000 0.00 0.00 31.47 4.00
709 730 0.958382 TTCCGTGTTATGCCACCAGC 60.958 55.000 0.00 0.00 44.14 4.85
723 744 4.880537 CAGCGCCGCCTAGGTCAG 62.881 72.222 11.31 2.31 43.70 3.51
725 746 4.874977 GCGCCGCCTAGGTCAGAC 62.875 72.222 11.31 0.00 43.70 3.51
726 747 3.141488 CGCCGCCTAGGTCAGACT 61.141 66.667 11.31 0.00 43.70 3.24
727 748 2.711922 CGCCGCCTAGGTCAGACTT 61.712 63.158 11.31 0.00 43.70 3.01
728 749 1.142097 GCCGCCTAGGTCAGACTTC 59.858 63.158 11.31 0.00 43.70 3.01
729 750 1.605058 GCCGCCTAGGTCAGACTTCA 61.605 60.000 11.31 0.00 43.70 3.02
730 751 0.895530 CCGCCTAGGTCAGACTTCAA 59.104 55.000 11.31 0.00 34.51 2.69
731 752 1.134965 CCGCCTAGGTCAGACTTCAAG 60.135 57.143 11.31 0.00 34.51 3.02
732 753 1.546476 CGCCTAGGTCAGACTTCAAGT 59.454 52.381 11.31 0.00 0.00 3.16
733 754 2.672478 CGCCTAGGTCAGACTTCAAGTG 60.672 54.545 11.31 0.00 0.00 3.16
734 755 2.300437 GCCTAGGTCAGACTTCAAGTGT 59.700 50.000 11.31 0.00 0.00 3.55
735 756 3.615351 GCCTAGGTCAGACTTCAAGTGTC 60.615 52.174 11.31 0.00 34.88 3.67
750 771 8.186821 ACTTCAAGTGTCAGAATTTCTTTTCAG 58.813 33.333 0.00 0.00 0.00 3.02
759 780 6.427853 TCAGAATTTCTTTTCAGATCTTCGCA 59.572 34.615 0.00 0.00 30.39 5.10
812 834 2.036346 GAGCATTTCTTGTGGGCAAACT 59.964 45.455 0.00 0.00 33.73 2.66
840 862 0.396435 AGTGAGCAATTGACCGTCCA 59.604 50.000 10.34 0.00 0.00 4.02
866 892 0.550914 TAATGGTAGGGCAAGGCAGG 59.449 55.000 0.00 0.00 0.00 4.85
867 893 2.228841 AATGGTAGGGCAAGGCAGGG 62.229 60.000 0.00 0.00 0.00 4.45
868 894 3.015145 GGTAGGGCAAGGCAGGGA 61.015 66.667 0.00 0.00 0.00 4.20
869 895 2.612493 GGTAGGGCAAGGCAGGGAA 61.612 63.158 0.00 0.00 0.00 3.97
870 896 1.378646 GTAGGGCAAGGCAGGGAAC 60.379 63.158 0.00 0.00 0.00 3.62
871 897 2.966732 TAGGGCAAGGCAGGGAACG 61.967 63.158 0.00 0.00 0.00 3.95
872 898 4.660938 GGGCAAGGCAGGGAACGT 62.661 66.667 0.00 0.00 0.00 3.99
873 899 2.597510 GGCAAGGCAGGGAACGTT 60.598 61.111 0.00 0.00 0.00 3.99
874 900 2.626780 GGCAAGGCAGGGAACGTTC 61.627 63.158 20.14 20.14 0.00 3.95
875 901 1.600916 GCAAGGCAGGGAACGTTCT 60.601 57.895 26.32 6.23 0.00 3.01
876 902 1.578206 GCAAGGCAGGGAACGTTCTC 61.578 60.000 26.32 23.76 0.00 2.87
877 903 0.035458 CAAGGCAGGGAACGTTCTCT 59.965 55.000 25.07 25.07 38.96 3.10
882 908 2.746697 AGGGAACGTTCTCTGCTCA 58.253 52.632 29.45 0.00 36.45 4.26
883 909 0.605589 AGGGAACGTTCTCTGCTCAG 59.394 55.000 29.45 0.00 36.45 3.35
884 910 0.603569 GGGAACGTTCTCTGCTCAGA 59.396 55.000 26.32 0.00 35.85 3.27
885 911 1.670380 GGGAACGTTCTCTGCTCAGAC 60.670 57.143 26.32 6.77 33.22 3.51
886 912 1.332178 GAACGTTCTCTGCTCAGACG 58.668 55.000 20.97 7.69 33.22 4.18
887 913 0.039074 AACGTTCTCTGCTCAGACGG 60.039 55.000 12.17 0.00 33.22 4.79
888 914 1.153939 CGTTCTCTGCTCAGACGGG 60.154 63.158 0.00 0.00 33.22 5.28
889 915 1.446966 GTTCTCTGCTCAGACGGGC 60.447 63.158 0.00 0.00 33.22 6.13
890 916 1.908299 TTCTCTGCTCAGACGGGCA 60.908 57.895 0.00 0.00 36.94 5.36
891 917 1.471829 TTCTCTGCTCAGACGGGCAA 61.472 55.000 0.00 0.00 38.02 4.52
900 926 3.190535 GCTCAGACGGGCAAGAAATTAAA 59.809 43.478 0.00 0.00 0.00 1.52
924 950 6.860080 ACCCGTATATATAGTCAATCAACCG 58.140 40.000 0.00 0.00 0.00 4.44
946 975 2.485479 CCCCGGATGAAAACGATCAGAT 60.485 50.000 0.73 0.00 31.76 2.90
969 998 1.082366 CGGCACTGGCGTAAAACAC 60.082 57.895 16.48 0.00 46.33 3.32
978 1007 1.804151 GGCGTAAAACACATCTGCTCA 59.196 47.619 0.00 0.00 0.00 4.26
979 1008 2.225491 GGCGTAAAACACATCTGCTCAA 59.775 45.455 0.00 0.00 0.00 3.02
982 1011 4.457810 CGTAAAACACATCTGCTCAACTG 58.542 43.478 0.00 0.00 0.00 3.16
983 1012 4.024893 CGTAAAACACATCTGCTCAACTGT 60.025 41.667 0.00 0.00 0.00 3.55
984 1013 4.989279 AAAACACATCTGCTCAACTGTT 57.011 36.364 0.00 0.00 0.00 3.16
985 1014 6.292649 CGTAAAACACATCTGCTCAACTGTTA 60.293 38.462 0.00 0.00 0.00 2.41
988 1017 2.417933 CACATCTGCTCAACTGTTAGCC 59.582 50.000 14.82 0.17 37.97 3.93
990 1019 0.037326 TCTGCTCAACTGTTAGCCCG 60.037 55.000 14.82 9.13 37.97 6.13
992 1021 0.602638 TGCTCAACTGTTAGCCCGTG 60.603 55.000 14.82 0.00 37.97 4.94
993 1022 0.602905 GCTCAACTGTTAGCCCGTGT 60.603 55.000 9.44 0.00 32.40 4.49
994 1023 1.337447 GCTCAACTGTTAGCCCGTGTA 60.337 52.381 9.44 0.00 32.40 2.90
995 1024 2.677037 GCTCAACTGTTAGCCCGTGTAT 60.677 50.000 9.44 0.00 32.40 2.29
997 1026 4.751060 CTCAACTGTTAGCCCGTGTATTA 58.249 43.478 0.00 0.00 0.00 0.98
998 1027 4.497300 TCAACTGTTAGCCCGTGTATTAC 58.503 43.478 0.00 0.00 0.00 1.89
999 1028 4.021280 TCAACTGTTAGCCCGTGTATTACA 60.021 41.667 0.00 0.00 0.00 2.41
1000 1029 4.540359 ACTGTTAGCCCGTGTATTACAA 57.460 40.909 0.00 0.00 0.00 2.41
1001 1030 5.093849 ACTGTTAGCCCGTGTATTACAAT 57.906 39.130 0.00 0.00 0.00 2.71
1002 1031 4.873827 ACTGTTAGCCCGTGTATTACAATG 59.126 41.667 0.00 0.00 0.00 2.82
1003 1032 4.193090 TGTTAGCCCGTGTATTACAATGG 58.807 43.478 0.00 3.97 0.00 3.16
1004 1033 1.675552 AGCCCGTGTATTACAATGGC 58.324 50.000 21.72 21.72 43.46 4.40
1005 1034 1.065053 AGCCCGTGTATTACAATGGCA 60.065 47.619 26.96 0.00 44.74 4.92
1006 1035 1.333619 GCCCGTGTATTACAATGGCAG 59.666 52.381 23.23 9.25 42.96 4.85
1007 1036 1.333619 CCCGTGTATTACAATGGCAGC 59.666 52.381 9.75 0.00 0.00 5.25
1025 1059 0.103937 GCATCTCACCCCTCTCGAAG 59.896 60.000 0.00 0.00 0.00 3.79
1031 1065 1.534235 ACCCCTCTCGAAGCAGTGT 60.534 57.895 0.00 0.00 0.00 3.55
1087 1121 1.267574 CCCAGGCTGCTTCTCCAGTA 61.268 60.000 9.56 0.00 35.28 2.74
1094 1128 4.342665 AGGCTGCTTCTCCAGTAAGTATAC 59.657 45.833 0.00 0.00 35.28 1.47
1100 1134 8.762481 TGCTTCTCCAGTAAGTATACATCTAA 57.238 34.615 5.50 0.00 34.29 2.10
1130 1190 6.648879 TCTTGTTTCATTTTCTCGGGAAAT 57.351 33.333 12.07 0.00 40.57 2.17
1131 1191 7.049799 TCTTGTTTCATTTTCTCGGGAAATT 57.950 32.000 12.07 5.21 40.57 1.82
1135 1195 8.172352 TGTTTCATTTTCTCGGGAAATTTAGA 57.828 30.769 12.07 4.72 40.57 2.10
1141 1201 9.076596 CATTTTCTCGGGAAATTTAGATCAAAC 57.923 33.333 12.07 0.00 40.57 2.93
1146 1206 4.947388 CGGGAAATTTAGATCAAACTCCCA 59.053 41.667 22.68 0.00 44.80 4.37
1158 1218 3.077359 CAAACTCCCACTTGATCTGGAC 58.923 50.000 1.07 0.00 0.00 4.02
1166 1226 3.604582 CACTTGATCTGGACCTCCTTTC 58.395 50.000 0.00 0.00 36.82 2.62
1168 1228 3.913163 ACTTGATCTGGACCTCCTTTCTT 59.087 43.478 0.00 0.00 36.82 2.52
1169 1229 4.019771 ACTTGATCTGGACCTCCTTTCTTC 60.020 45.833 0.00 0.00 36.82 2.87
1171 1231 1.267121 TCTGGACCTCCTTTCTTCCG 58.733 55.000 0.00 0.00 36.82 4.30
1172 1232 0.977395 CTGGACCTCCTTTCTTCCGT 59.023 55.000 0.00 0.00 36.82 4.69
1175 1235 1.346722 GGACCTCCTTTCTTCCGTTGA 59.653 52.381 0.00 0.00 0.00 3.18
1176 1236 2.027100 GGACCTCCTTTCTTCCGTTGAT 60.027 50.000 0.00 0.00 0.00 2.57
1177 1237 3.559384 GGACCTCCTTTCTTCCGTTGATT 60.559 47.826 0.00 0.00 0.00 2.57
1193 1253 4.367450 GTTGATTGTTGCAGGCAAAGTTA 58.633 39.130 8.47 0.00 37.70 2.24
1204 1264 2.649816 AGGCAAAGTTACCCTGGAGATT 59.350 45.455 0.00 0.00 0.00 2.40
1216 1276 1.208052 CTGGAGATTTTCGAGAGGGCA 59.792 52.381 0.00 0.00 33.82 5.36
1250 1310 3.303495 CGACGACCACAATGTAAGTCATC 59.697 47.826 13.75 8.49 35.48 2.92
1259 1319 1.909376 TGTAAGTCATCTCGAAGCGC 58.091 50.000 0.00 0.00 0.00 5.92
1275 1335 1.025647 GCGCAAACATACCGGGGTTA 61.026 55.000 6.32 0.00 0.00 2.85
1314 1374 4.801891 TGAGATTTAACGTAGTCGCAGTT 58.198 39.130 0.00 0.00 45.00 3.16
1315 1375 4.855388 TGAGATTTAACGTAGTCGCAGTTC 59.145 41.667 0.00 0.00 45.00 3.01
1333 1393 6.445267 CAGTTCATGCTATATTCGTGAGAC 57.555 41.667 0.00 0.00 41.84 3.36
1349 1409 1.334243 GAGACCTTACGTGGAGATCCG 59.666 57.143 0.00 0.00 39.43 4.18
1351 1411 0.815734 ACCTTACGTGGAGATCCGTG 59.184 55.000 0.00 0.00 37.91 4.94
1353 1413 2.019249 CCTTACGTGGAGATCCGTGTA 58.981 52.381 0.00 0.00 37.91 2.90
1354 1414 2.424601 CCTTACGTGGAGATCCGTGTAA 59.575 50.000 0.00 12.47 37.91 2.41
1355 1415 3.119388 CCTTACGTGGAGATCCGTGTAAA 60.119 47.826 13.50 0.00 37.59 2.01
1356 1416 4.487948 CTTACGTGGAGATCCGTGTAAAA 58.512 43.478 13.50 0.42 37.59 1.52
1357 1417 3.604875 ACGTGGAGATCCGTGTAAAAT 57.395 42.857 0.00 0.00 39.43 1.82
1358 1418 3.934068 ACGTGGAGATCCGTGTAAAATT 58.066 40.909 0.00 0.00 39.43 1.82
1359 1419 4.320870 ACGTGGAGATCCGTGTAAAATTT 58.679 39.130 0.00 0.00 39.43 1.82
1360 1420 4.390909 ACGTGGAGATCCGTGTAAAATTTC 59.609 41.667 0.00 0.00 39.43 2.17
1361 1421 4.201783 CGTGGAGATCCGTGTAAAATTTCC 60.202 45.833 0.00 0.00 39.43 3.13
1362 1422 4.941873 GTGGAGATCCGTGTAAAATTTCCT 59.058 41.667 0.00 0.00 39.43 3.36
1363 1423 5.414765 GTGGAGATCCGTGTAAAATTTCCTT 59.585 40.000 0.00 0.00 39.43 3.36
1364 1424 6.007703 TGGAGATCCGTGTAAAATTTCCTTT 58.992 36.000 0.00 0.00 39.43 3.11
1365 1425 6.492087 TGGAGATCCGTGTAAAATTTCCTTTT 59.508 34.615 0.00 0.00 38.58 2.27
1366 1426 7.666388 TGGAGATCCGTGTAAAATTTCCTTTTA 59.334 33.333 0.00 0.00 37.25 1.52
1367 1427 8.517056 GGAGATCCGTGTAAAATTTCCTTTTAA 58.483 33.333 0.00 0.00 40.18 1.52
1410 1470 9.689976 TTTTTATATGTTGTGTCATTTGACTGG 57.310 29.630 11.67 0.00 44.99 4.00
1411 1471 7.994425 TTATATGTTGTGTCATTTGACTGGT 57.006 32.000 11.67 0.00 44.99 4.00
1412 1472 6.899393 ATATGTTGTGTCATTTGACTGGTT 57.101 33.333 11.67 0.00 44.99 3.67
1413 1473 7.994425 ATATGTTGTGTCATTTGACTGGTTA 57.006 32.000 11.67 0.00 44.99 2.85
1414 1474 6.707440 ATGTTGTGTCATTTGACTGGTTAA 57.293 33.333 11.67 0.00 44.99 2.01
1415 1475 6.130298 TGTTGTGTCATTTGACTGGTTAAG 57.870 37.500 11.67 0.00 44.99 1.85
1416 1476 5.650266 TGTTGTGTCATTTGACTGGTTAAGT 59.350 36.000 11.67 0.00 44.99 2.24
1435 1495 8.353684 GGTTAAGTCTTGATCGATTGAGATCTA 58.646 37.037 12.85 6.81 45.35 1.98
1439 1499 4.829492 TCTTGATCGATTGAGATCTAGCCA 59.171 41.667 0.00 0.00 44.41 4.75
1444 1504 2.363680 CGATTGAGATCTAGCCACACCT 59.636 50.000 0.00 0.00 0.00 4.00
1447 1507 5.537188 GATTGAGATCTAGCCACACCTTAG 58.463 45.833 0.00 0.00 0.00 2.18
1453 1513 6.318913 AGATCTAGCCACACCTTAGACATAT 58.681 40.000 0.00 0.00 0.00 1.78
1454 1514 5.791336 TCTAGCCACACCTTAGACATATG 57.209 43.478 0.00 0.00 0.00 1.78
1474 1534 2.092995 TGTGTTTGTGAAAGTGACGACG 59.907 45.455 0.00 0.00 0.00 5.12
1475 1535 2.093152 GTGTTTGTGAAAGTGACGACGT 59.907 45.455 0.00 0.00 0.00 4.34
1476 1536 3.304026 GTGTTTGTGAAAGTGACGACGTA 59.696 43.478 0.00 0.00 0.00 3.57
1477 1537 3.304026 TGTTTGTGAAAGTGACGACGTAC 59.696 43.478 0.00 0.00 0.00 3.67
1505 1565 4.789012 ATATGGTGTTTGAAACTGCCTG 57.211 40.909 17.83 0.00 0.00 4.85
1551 1611 4.863925 GAGTGCGCGGAGGAGCTC 62.864 72.222 8.83 4.71 39.95 4.09
1749 1809 4.435436 TGCAGCTACACGCCGGAG 62.435 66.667 5.05 3.72 40.39 4.63
1936 2017 4.214327 CGCTCCTCCTCGCCTTCC 62.214 72.222 0.00 0.00 0.00 3.46
1994 2075 2.983136 GAGCGATGGTGATCTTACGATG 59.017 50.000 0.00 0.00 0.00 3.84
1995 2076 2.362397 AGCGATGGTGATCTTACGATGT 59.638 45.455 0.00 0.00 0.00 3.06
1996 2077 3.568430 AGCGATGGTGATCTTACGATGTA 59.432 43.478 0.00 0.00 0.00 2.29
1997 2078 3.669122 GCGATGGTGATCTTACGATGTAC 59.331 47.826 0.00 0.00 0.00 2.90
1998 2079 4.556898 GCGATGGTGATCTTACGATGTACT 60.557 45.833 0.00 0.00 0.00 2.73
2032 2116 6.293004 TGATTTTGGTTTCAGGTTGAGTTT 57.707 33.333 0.00 0.00 0.00 2.66
2037 2121 6.399639 TTGGTTTCAGGTTGAGTTTTATCC 57.600 37.500 0.00 0.00 0.00 2.59
2038 2122 4.830600 TGGTTTCAGGTTGAGTTTTATCCC 59.169 41.667 0.00 0.00 0.00 3.85
2039 2123 4.830600 GGTTTCAGGTTGAGTTTTATCCCA 59.169 41.667 0.00 0.00 0.00 4.37
2040 2124 5.480422 GGTTTCAGGTTGAGTTTTATCCCAT 59.520 40.000 0.00 0.00 0.00 4.00
2041 2125 6.389906 GTTTCAGGTTGAGTTTTATCCCATG 58.610 40.000 0.00 0.00 0.00 3.66
2118 2207 1.661463 TCTCTCACAGGGCAAGGAAT 58.339 50.000 0.00 0.00 0.00 3.01
2127 2216 6.071984 TCACAGGGCAAGGAATAACTAAAAA 58.928 36.000 0.00 0.00 0.00 1.94
2201 2291 6.584185 TTACCTAGCAAACAAAAATCCTCC 57.416 37.500 0.00 0.00 0.00 4.30
2231 2321 2.145536 CATTTGCACCAAGCCCTTTTC 58.854 47.619 0.00 0.00 44.83 2.29
2238 2328 0.250727 CCAAGCCCTTTTCCTGACGA 60.251 55.000 0.00 0.00 0.00 4.20
2247 2337 4.154918 CCCTTTTCCTGACGAGAGAATTTG 59.845 45.833 0.00 0.00 0.00 2.32
2248 2338 4.997395 CCTTTTCCTGACGAGAGAATTTGA 59.003 41.667 0.00 0.00 0.00 2.69
2252 2342 3.056536 TCCTGACGAGAGAATTTGACAGG 60.057 47.826 0.00 0.00 43.13 4.00
2254 2344 4.382470 CCTGACGAGAGAATTTGACAGGAT 60.382 45.833 0.00 0.00 44.08 3.24
2256 2346 6.462207 CCTGACGAGAGAATTTGACAGGATAT 60.462 42.308 0.00 0.00 44.08 1.63
2257 2347 7.255625 CCTGACGAGAGAATTTGACAGGATATA 60.256 40.741 0.00 0.00 44.08 0.86
2281 2384 6.696411 AGTTCAATTCACTCAAGAGTAGGAG 58.304 40.000 1.86 0.00 40.20 3.69
2310 2413 2.481289 TTGGAATGCCATCACGTGTA 57.519 45.000 16.51 2.58 45.46 2.90
2347 2450 3.012518 AGCTACATGTGGAATGCTGAAC 58.987 45.455 14.15 0.00 0.00 3.18
2517 2628 4.588951 ACACTGTCAATCTGTGGACTCTAA 59.411 41.667 9.01 0.00 45.87 2.10
2522 2633 6.353323 TGTCAATCTGTGGACTCTAAAAACA 58.647 36.000 0.00 0.00 35.11 2.83
2673 2785 6.996509 AGCAAATCATACAATCAAAACACCT 58.003 32.000 0.00 0.00 0.00 4.00
2729 2841 1.667724 CATTTTCCTACTGGAGCGCAG 59.332 52.381 11.47 0.00 44.24 5.18
2733 2845 0.246635 TCCTACTGGAGCGCAGAAAC 59.753 55.000 11.47 0.00 37.46 2.78
2737 2849 0.035317 ACTGGAGCGCAGAAACATCA 59.965 50.000 11.47 0.00 0.00 3.07
2743 2855 2.677836 GAGCGCAGAAACATCAACCATA 59.322 45.455 11.47 0.00 0.00 2.74
2748 2860 3.365832 CAGAAACATCAACCATATGCGC 58.634 45.455 0.00 0.00 0.00 6.09
2773 2885 5.193099 ACCAACTCAAACAGGGCTAATAT 57.807 39.130 0.00 0.00 0.00 1.28
2774 2886 5.580022 ACCAACTCAAACAGGGCTAATATT 58.420 37.500 0.00 0.00 0.00 1.28
2775 2887 5.418840 ACCAACTCAAACAGGGCTAATATTG 59.581 40.000 0.00 0.00 0.00 1.90
2776 2888 5.343249 CAACTCAAACAGGGCTAATATTGC 58.657 41.667 0.00 0.00 0.00 3.56
2777 2889 4.860022 ACTCAAACAGGGCTAATATTGCT 58.140 39.130 0.00 0.00 0.00 3.91
2778 2890 5.264395 ACTCAAACAGGGCTAATATTGCTT 58.736 37.500 0.00 0.00 0.00 3.91
2779 2891 5.716703 ACTCAAACAGGGCTAATATTGCTTT 59.283 36.000 0.00 0.00 0.00 3.51
2781 2893 5.951747 TCAAACAGGGCTAATATTGCTTTCT 59.048 36.000 0.00 0.00 0.00 2.52
2783 2895 5.116084 ACAGGGCTAATATTGCTTTCTCA 57.884 39.130 0.00 0.00 0.00 3.27
2784 2896 4.884164 ACAGGGCTAATATTGCTTTCTCAC 59.116 41.667 0.00 0.00 0.00 3.51
2787 2899 6.767902 CAGGGCTAATATTGCTTTCTCACTAA 59.232 38.462 0.00 0.00 0.00 2.24
2789 2901 7.834181 AGGGCTAATATTGCTTTCTCACTAAAA 59.166 33.333 0.00 0.00 0.00 1.52
2790 2902 8.466798 GGGCTAATATTGCTTTCTCACTAAAAA 58.533 33.333 0.00 0.00 0.00 1.94
2815 2927 9.639601 AAAAAGAGGCTAAATATTGCTTACAAC 57.360 29.630 0.00 0.00 38.99 3.32
2816 2928 6.944234 AGAGGCTAAATATTGCTTACAACC 57.056 37.500 0.00 0.00 38.99 3.77
2837 2949 4.194640 CCAATTGGACCTCTACACATGAG 58.805 47.826 20.50 0.00 37.39 2.90
2894 3006 8.438676 AAAAAGATGATACAGAGTATTTCCCG 57.561 34.615 0.00 0.00 0.00 5.14
2895 3007 6.732896 AAGATGATACAGAGTATTTCCCGT 57.267 37.500 0.00 0.00 0.00 5.28
2950 3062 9.569167 GCTACCAAATTCTTATAGGTTGTTTTC 57.431 33.333 0.00 0.00 33.91 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.582636 CCTACTGCAATACCTGTAATTCTGA 58.417 40.000 0.00 0.00 0.00 3.27
175 182 6.740905 CGTAAAACGTATGCTTTTCATGTGAT 59.259 34.615 0.00 0.00 36.74 3.06
294 304 4.917415 GCTGTCTTGCACGATAACATTTTT 59.083 37.500 0.00 0.00 0.00 1.94
377 388 5.048846 ACTCTAATCTGACCTCCTCTCTC 57.951 47.826 0.00 0.00 0.00 3.20
392 403 8.997323 GTCTGCATTTGATATTGCTACTCTAAT 58.003 33.333 0.00 0.00 39.60 1.73
405 416 4.693095 TGCGTAACAAGTCTGCATTTGATA 59.307 37.500 11.33 3.23 0.00 2.15
406 417 3.501828 TGCGTAACAAGTCTGCATTTGAT 59.498 39.130 11.33 4.02 0.00 2.57
407 418 2.875317 TGCGTAACAAGTCTGCATTTGA 59.125 40.909 11.33 0.00 0.00 2.69
412 423 1.155889 CCATGCGTAACAAGTCTGCA 58.844 50.000 0.00 0.00 40.23 4.41
413 424 1.128692 GTCCATGCGTAACAAGTCTGC 59.871 52.381 0.00 0.00 0.00 4.26
414 425 1.732259 GGTCCATGCGTAACAAGTCTG 59.268 52.381 0.00 0.00 0.00 3.51
415 426 1.623811 AGGTCCATGCGTAACAAGTCT 59.376 47.619 0.00 0.00 0.00 3.24
416 427 1.732259 CAGGTCCATGCGTAACAAGTC 59.268 52.381 0.00 0.00 0.00 3.01
417 428 1.071699 ACAGGTCCATGCGTAACAAGT 59.928 47.619 0.00 0.00 0.00 3.16
419 430 1.876799 CAACAGGTCCATGCGTAACAA 59.123 47.619 0.00 0.00 0.00 2.83
420 431 1.202710 ACAACAGGTCCATGCGTAACA 60.203 47.619 0.00 0.00 0.00 2.41
421 432 1.519408 ACAACAGGTCCATGCGTAAC 58.481 50.000 0.00 0.00 0.00 2.50
422 433 2.264005 AACAACAGGTCCATGCGTAA 57.736 45.000 0.00 0.00 0.00 3.18
423 434 2.264005 AAACAACAGGTCCATGCGTA 57.736 45.000 0.00 0.00 0.00 4.42
424 435 1.398692 AAAACAACAGGTCCATGCGT 58.601 45.000 0.00 0.00 0.00 5.24
460 471 5.467705 GCATCAAGTTTCATCTCAGCTTTT 58.532 37.500 0.00 0.00 0.00 2.27
479 490 0.598065 AAAAGCACTTCACCGGCATC 59.402 50.000 0.00 0.00 0.00 3.91
491 503 6.145535 CCAACAGTTTCTATCAGAAAAGCAC 58.854 40.000 3.04 0.00 44.84 4.40
494 506 6.263168 ACCACCAACAGTTTCTATCAGAAAAG 59.737 38.462 3.04 2.76 44.84 2.27
498 510 4.641396 CACCACCAACAGTTTCTATCAGA 58.359 43.478 0.00 0.00 0.00 3.27
501 513 3.058224 GTGCACCACCAACAGTTTCTATC 60.058 47.826 5.22 0.00 0.00 2.08
529 550 1.546476 CTCCTCTAGGTGCACTTTCGT 59.454 52.381 17.98 0.00 36.34 3.85
530 551 1.546476 ACTCCTCTAGGTGCACTTTCG 59.454 52.381 17.98 4.20 36.34 3.46
540 561 6.566942 CGTGAGAATATTTCGACTCCTCTAGG 60.567 46.154 0.00 0.00 34.02 3.02
561 582 5.907866 TGGTATATGTCAAGAGTTCGTGA 57.092 39.130 0.00 0.00 32.16 4.35
562 583 6.980978 AGATTGGTATATGTCAAGAGTTCGTG 59.019 38.462 0.00 0.00 0.00 4.35
564 585 7.429633 AGAGATTGGTATATGTCAAGAGTTCG 58.570 38.462 0.00 0.00 0.00 3.95
565 586 8.637986 AGAGAGATTGGTATATGTCAAGAGTTC 58.362 37.037 0.00 0.00 0.00 3.01
568 589 8.408043 AGAGAGAGATTGGTATATGTCAAGAG 57.592 38.462 0.00 0.00 0.00 2.85
569 590 8.224025 AGAGAGAGAGATTGGTATATGTCAAGA 58.776 37.037 0.00 0.00 0.00 3.02
570 591 8.408043 AGAGAGAGAGATTGGTATATGTCAAG 57.592 38.462 0.00 0.00 0.00 3.02
571 592 8.224025 AGAGAGAGAGAGATTGGTATATGTCAA 58.776 37.037 0.00 0.00 0.00 3.18
572 593 7.754624 AGAGAGAGAGAGATTGGTATATGTCA 58.245 38.462 0.00 0.00 0.00 3.58
573 594 8.103305 AGAGAGAGAGAGAGATTGGTATATGTC 58.897 40.741 0.00 0.00 0.00 3.06
574 595 7.988937 AGAGAGAGAGAGAGATTGGTATATGT 58.011 38.462 0.00 0.00 0.00 2.29
575 596 8.324306 AGAGAGAGAGAGAGAGATTGGTATATG 58.676 40.741 0.00 0.00 0.00 1.78
576 597 8.454859 AGAGAGAGAGAGAGAGATTGGTATAT 57.545 38.462 0.00 0.00 0.00 0.86
577 598 7.734865 AGAGAGAGAGAGAGAGAGATTGGTATA 59.265 40.741 0.00 0.00 0.00 1.47
578 599 6.560304 AGAGAGAGAGAGAGAGAGATTGGTAT 59.440 42.308 0.00 0.00 0.00 2.73
579 600 5.905331 AGAGAGAGAGAGAGAGAGATTGGTA 59.095 44.000 0.00 0.00 0.00 3.25
580 601 4.723789 AGAGAGAGAGAGAGAGAGATTGGT 59.276 45.833 0.00 0.00 0.00 3.67
581 602 5.071519 AGAGAGAGAGAGAGAGAGAGATTGG 59.928 48.000 0.00 0.00 0.00 3.16
582 603 6.041865 AGAGAGAGAGAGAGAGAGAGAGATTG 59.958 46.154 0.00 0.00 0.00 2.67
583 604 6.142498 AGAGAGAGAGAGAGAGAGAGAGATT 58.858 44.000 0.00 0.00 0.00 2.40
584 605 5.714863 AGAGAGAGAGAGAGAGAGAGAGAT 58.285 45.833 0.00 0.00 0.00 2.75
585 606 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
586 607 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
587 608 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
588 609 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
589 610 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
590 611 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
591 612 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
592 613 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
593 614 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
594 615 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
595 616 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
596 617 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
597 618 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
598 619 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
599 620 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
600 621 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
601 622 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
602 623 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
603 624 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
604 625 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
605 626 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
606 627 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
607 628 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
608 629 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
609 630 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
610 631 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
611 632 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
612 633 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
613 634 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
614 635 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
615 636 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
616 637 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
617 638 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
618 639 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
619 640 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
620 641 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
621 642 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
622 643 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
623 644 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
624 645 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
625 646 7.921041 ATAAAGAGAGAGAGAGAGAGAGAGA 57.079 40.000 0.00 0.00 0.00 3.10
626 647 9.482627 GTTATAAAGAGAGAGAGAGAGAGAGAG 57.517 40.741 0.00 0.00 0.00 3.20
627 648 8.988060 TGTTATAAAGAGAGAGAGAGAGAGAGA 58.012 37.037 0.00 0.00 0.00 3.10
628 649 9.613428 TTGTTATAAAGAGAGAGAGAGAGAGAG 57.387 37.037 0.00 0.00 0.00 3.20
629 650 9.613428 CTTGTTATAAAGAGAGAGAGAGAGAGA 57.387 37.037 0.00 0.00 0.00 3.10
630 651 8.840321 CCTTGTTATAAAGAGAGAGAGAGAGAG 58.160 40.741 0.00 0.00 0.00 3.20
631 652 8.553153 TCCTTGTTATAAAGAGAGAGAGAGAGA 58.447 37.037 0.00 0.00 0.00 3.10
632 653 8.746052 TCCTTGTTATAAAGAGAGAGAGAGAG 57.254 38.462 0.00 0.00 0.00 3.20
654 675 9.829507 CACAGAATCTGTAAATTCTCTTATCCT 57.170 33.333 16.28 0.00 43.43 3.24
655 676 9.606631 ACACAGAATCTGTAAATTCTCTTATCC 57.393 33.333 16.28 0.00 43.43 2.59
658 679 9.996554 TCAACACAGAATCTGTAAATTCTCTTA 57.003 29.630 16.28 0.00 43.43 2.10
659 680 8.908786 TCAACACAGAATCTGTAAATTCTCTT 57.091 30.769 16.28 0.00 43.43 2.85
660 681 8.944029 CATCAACACAGAATCTGTAAATTCTCT 58.056 33.333 16.28 0.00 43.43 3.10
661 682 8.725148 ACATCAACACAGAATCTGTAAATTCTC 58.275 33.333 16.28 0.00 43.43 2.87
662 683 8.627208 ACATCAACACAGAATCTGTAAATTCT 57.373 30.769 16.28 0.00 43.43 2.40
667 688 8.946085 GGAATAACATCAACACAGAATCTGTAA 58.054 33.333 16.28 2.73 43.43 2.41
668 689 7.277760 CGGAATAACATCAACACAGAATCTGTA 59.722 37.037 16.28 0.33 43.43 2.74
669 690 6.092670 CGGAATAACATCAACACAGAATCTGT 59.907 38.462 10.56 10.56 46.51 3.41
670 691 6.092670 ACGGAATAACATCAACACAGAATCTG 59.907 38.462 8.98 8.98 37.52 2.90
671 692 6.092670 CACGGAATAACATCAACACAGAATCT 59.907 38.462 0.00 0.00 0.00 2.40
672 693 6.128282 ACACGGAATAACATCAACACAGAATC 60.128 38.462 0.00 0.00 0.00 2.52
673 694 5.705441 ACACGGAATAACATCAACACAGAAT 59.295 36.000 0.00 0.00 0.00 2.40
674 695 5.060506 ACACGGAATAACATCAACACAGAA 58.939 37.500 0.00 0.00 0.00 3.02
675 696 4.637276 ACACGGAATAACATCAACACAGA 58.363 39.130 0.00 0.00 0.00 3.41
676 697 5.356882 AACACGGAATAACATCAACACAG 57.643 39.130 0.00 0.00 0.00 3.66
677 698 6.621812 GCATAACACGGAATAACATCAACACA 60.622 38.462 0.00 0.00 0.00 3.72
678 699 5.737290 GCATAACACGGAATAACATCAACAC 59.263 40.000 0.00 0.00 0.00 3.32
679 700 5.163703 GGCATAACACGGAATAACATCAACA 60.164 40.000 0.00 0.00 0.00 3.33
680 701 5.163703 TGGCATAACACGGAATAACATCAAC 60.164 40.000 0.00 0.00 0.00 3.18
681 702 4.944317 TGGCATAACACGGAATAACATCAA 59.056 37.500 0.00 0.00 0.00 2.57
682 703 4.334203 GTGGCATAACACGGAATAACATCA 59.666 41.667 0.00 0.00 0.00 3.07
683 704 4.261031 GGTGGCATAACACGGAATAACATC 60.261 45.833 0.00 0.00 42.23 3.06
684 705 3.630312 GGTGGCATAACACGGAATAACAT 59.370 43.478 0.00 0.00 42.23 2.71
685 706 3.011119 GGTGGCATAACACGGAATAACA 58.989 45.455 0.00 0.00 42.23 2.41
686 707 3.011119 TGGTGGCATAACACGGAATAAC 58.989 45.455 0.00 0.00 42.23 1.89
687 708 3.275143 CTGGTGGCATAACACGGAATAA 58.725 45.455 0.00 0.00 42.23 1.40
688 709 2.912771 CTGGTGGCATAACACGGAATA 58.087 47.619 0.00 0.00 42.23 1.75
689 710 1.750193 CTGGTGGCATAACACGGAAT 58.250 50.000 0.00 0.00 42.23 3.01
690 711 0.958382 GCTGGTGGCATAACACGGAA 60.958 55.000 0.00 0.00 42.23 4.30
691 712 1.376683 GCTGGTGGCATAACACGGA 60.377 57.895 0.00 0.00 42.23 4.69
692 713 2.749865 CGCTGGTGGCATAACACGG 61.750 63.158 0.00 0.00 42.23 4.94
693 714 2.784596 CGCTGGTGGCATAACACG 59.215 61.111 0.00 0.00 42.23 4.49
694 715 2.485122 GCGCTGGTGGCATAACAC 59.515 61.111 0.00 0.00 41.91 3.32
695 716 2.749839 GGCGCTGGTGGCATAACA 60.750 61.111 7.64 0.00 41.91 2.41
696 717 3.876198 CGGCGCTGGTGGCATAAC 61.876 66.667 8.83 0.00 41.91 1.89
706 727 4.880537 CTGACCTAGGCGGCGCTG 62.881 72.222 32.30 20.56 35.61 5.18
708 729 4.874977 GTCTGACCTAGGCGGCGC 62.875 72.222 26.17 26.17 35.61 6.53
709 730 2.615262 GAAGTCTGACCTAGGCGGCG 62.615 65.000 9.30 0.51 35.70 6.46
710 731 1.142097 GAAGTCTGACCTAGGCGGC 59.858 63.158 9.30 0.00 35.70 6.53
711 732 0.895530 TTGAAGTCTGACCTAGGCGG 59.104 55.000 9.30 7.19 35.70 6.13
712 733 1.546476 ACTTGAAGTCTGACCTAGGCG 59.454 52.381 9.30 0.00 35.70 5.52
713 734 2.300437 ACACTTGAAGTCTGACCTAGGC 59.700 50.000 9.30 2.11 0.00 3.93
714 735 3.574396 TGACACTTGAAGTCTGACCTAGG 59.426 47.826 7.41 7.41 36.94 3.02
715 736 4.520874 TCTGACACTTGAAGTCTGACCTAG 59.479 45.833 3.76 0.00 38.50 3.02
716 737 4.470602 TCTGACACTTGAAGTCTGACCTA 58.529 43.478 3.76 0.00 38.50 3.08
717 738 3.300388 TCTGACACTTGAAGTCTGACCT 58.700 45.455 3.76 0.00 38.50 3.85
718 739 3.735237 TCTGACACTTGAAGTCTGACC 57.265 47.619 3.76 0.00 38.50 4.02
719 740 6.481644 AGAAATTCTGACACTTGAAGTCTGAC 59.518 38.462 0.00 0.00 41.58 3.51
720 741 6.586344 AGAAATTCTGACACTTGAAGTCTGA 58.414 36.000 0.00 0.00 40.63 3.27
721 742 6.857777 AGAAATTCTGACACTTGAAGTCTG 57.142 37.500 0.00 0.00 36.94 3.51
722 743 7.872113 AAAGAAATTCTGACACTTGAAGTCT 57.128 32.000 0.00 0.00 36.94 3.24
723 744 8.184192 TGAAAAGAAATTCTGACACTTGAAGTC 58.816 33.333 0.00 0.00 36.55 3.01
724 745 8.055279 TGAAAAGAAATTCTGACACTTGAAGT 57.945 30.769 0.00 0.00 0.00 3.01
725 746 8.400947 TCTGAAAAGAAATTCTGACACTTGAAG 58.599 33.333 0.00 0.00 33.86 3.02
726 747 8.279970 TCTGAAAAGAAATTCTGACACTTGAA 57.720 30.769 0.00 0.00 33.86 2.69
727 748 7.864108 TCTGAAAAGAAATTCTGACACTTGA 57.136 32.000 0.00 0.00 33.86 3.02
728 749 8.566260 AGATCTGAAAAGAAATTCTGACACTTG 58.434 33.333 0.00 0.00 39.21 3.16
729 750 8.688747 AGATCTGAAAAGAAATTCTGACACTT 57.311 30.769 0.00 0.00 39.21 3.16
730 751 8.688747 AAGATCTGAAAAGAAATTCTGACACT 57.311 30.769 0.00 0.00 39.21 3.55
731 752 7.743838 CGAAGATCTGAAAAGAAATTCTGACAC 59.256 37.037 0.00 0.00 39.21 3.67
732 753 7.571983 GCGAAGATCTGAAAAGAAATTCTGACA 60.572 37.037 0.00 0.00 39.21 3.58
733 754 6.740453 GCGAAGATCTGAAAAGAAATTCTGAC 59.260 38.462 0.00 0.00 39.21 3.51
734 755 6.427853 TGCGAAGATCTGAAAAGAAATTCTGA 59.572 34.615 0.00 0.00 40.21 3.27
735 756 6.605849 TGCGAAGATCTGAAAAGAAATTCTG 58.394 36.000 0.00 0.00 0.00 3.02
765 786 5.359756 GGTCCAACTTTCTGCAAAGATTTT 58.640 37.500 5.15 0.00 41.60 1.82
769 790 1.946768 CGGTCCAACTTTCTGCAAAGA 59.053 47.619 5.15 0.00 41.60 2.52
770 791 1.676006 ACGGTCCAACTTTCTGCAAAG 59.324 47.619 0.00 0.00 44.24 2.77
771 792 1.403679 CACGGTCCAACTTTCTGCAAA 59.596 47.619 0.00 0.00 0.00 3.68
812 834 4.216257 GGTCAATTGCTCACTCTTTGCTAA 59.784 41.667 0.00 0.00 0.00 3.09
840 862 3.117512 CCTTGCCCTACCATTACTCCAAT 60.118 47.826 0.00 0.00 0.00 3.16
853 879 2.966732 CGTTCCCTGCCTTGCCCTA 61.967 63.158 0.00 0.00 0.00 3.53
866 892 1.704070 GTCTGAGCAGAGAACGTTCC 58.296 55.000 24.22 15.46 38.27 3.62
867 893 1.332178 CGTCTGAGCAGAGAACGTTC 58.668 55.000 20.71 20.71 38.27 3.95
868 894 0.039074 CCGTCTGAGCAGAGAACGTT 60.039 55.000 0.00 0.00 38.27 3.99
869 895 1.581954 CCGTCTGAGCAGAGAACGT 59.418 57.895 0.00 0.00 38.27 3.99
870 896 1.153939 CCCGTCTGAGCAGAGAACG 60.154 63.158 0.00 2.13 38.27 3.95
871 897 1.446966 GCCCGTCTGAGCAGAGAAC 60.447 63.158 0.00 0.00 38.27 3.01
872 898 1.471829 TTGCCCGTCTGAGCAGAGAA 61.472 55.000 0.00 0.00 40.73 2.87
873 899 1.881903 CTTGCCCGTCTGAGCAGAGA 61.882 60.000 0.00 0.00 40.73 3.10
874 900 1.447489 CTTGCCCGTCTGAGCAGAG 60.447 63.158 0.00 0.00 40.73 3.35
875 901 1.471829 TTCTTGCCCGTCTGAGCAGA 61.472 55.000 0.00 0.00 40.73 4.26
876 902 0.603707 TTTCTTGCCCGTCTGAGCAG 60.604 55.000 0.00 0.00 40.73 4.24
877 903 0.036732 ATTTCTTGCCCGTCTGAGCA 59.963 50.000 0.00 0.00 37.18 4.26
878 904 1.168714 AATTTCTTGCCCGTCTGAGC 58.831 50.000 0.00 0.00 0.00 4.26
879 905 4.379499 GGTTTAATTTCTTGCCCGTCTGAG 60.379 45.833 0.00 0.00 0.00 3.35
880 906 3.504520 GGTTTAATTTCTTGCCCGTCTGA 59.495 43.478 0.00 0.00 0.00 3.27
881 907 3.366985 GGGTTTAATTTCTTGCCCGTCTG 60.367 47.826 0.00 0.00 0.00 3.51
882 908 2.823747 GGGTTTAATTTCTTGCCCGTCT 59.176 45.455 0.00 0.00 0.00 4.18
883 909 3.226346 GGGTTTAATTTCTTGCCCGTC 57.774 47.619 0.00 0.00 0.00 4.79
886 912 4.994907 ATACGGGTTTAATTTCTTGCCC 57.005 40.909 0.00 0.00 0.00 5.36
900 926 6.626623 GCGGTTGATTGACTATATATACGGGT 60.627 42.308 0.00 0.00 0.00 5.28
924 950 0.746563 TGATCGTTTTCATCCGGGGC 60.747 55.000 0.00 0.00 0.00 5.80
934 963 2.190981 GCCGTCGTATCTGATCGTTTT 58.809 47.619 0.00 0.00 0.00 2.43
946 975 2.139888 TTTACGCCAGTGCCGTCGTA 62.140 55.000 0.87 1.96 39.88 3.43
969 998 2.012673 GGGCTAACAGTTGAGCAGATG 58.987 52.381 13.46 0.00 40.64 2.90
978 1007 4.540359 TGTAATACACGGGCTAACAGTT 57.460 40.909 0.00 0.00 0.00 3.16
979 1008 4.540359 TTGTAATACACGGGCTAACAGT 57.460 40.909 0.00 0.00 0.00 3.55
982 1011 3.002965 GCCATTGTAATACACGGGCTAAC 59.997 47.826 20.77 0.30 41.65 2.34
983 1012 3.207778 GCCATTGTAATACACGGGCTAA 58.792 45.455 20.77 0.00 41.65 3.09
984 1013 2.170817 TGCCATTGTAATACACGGGCTA 59.829 45.455 25.30 14.66 43.85 3.93
985 1014 1.065053 TGCCATTGTAATACACGGGCT 60.065 47.619 25.30 0.00 43.85 5.19
988 1017 2.013400 TGCTGCCATTGTAATACACGG 58.987 47.619 0.00 0.00 0.00 4.94
990 1019 4.576053 TGAGATGCTGCCATTGTAATACAC 59.424 41.667 0.00 0.00 0.00 2.90
992 1021 4.023707 GGTGAGATGCTGCCATTGTAATAC 60.024 45.833 0.00 0.00 0.00 1.89
993 1022 4.136796 GGTGAGATGCTGCCATTGTAATA 58.863 43.478 0.00 0.00 0.00 0.98
994 1023 2.954318 GGTGAGATGCTGCCATTGTAAT 59.046 45.455 0.00 0.00 0.00 1.89
995 1024 2.368439 GGTGAGATGCTGCCATTGTAA 58.632 47.619 0.00 0.00 0.00 2.41
997 1026 0.682209 GGGTGAGATGCTGCCATTGT 60.682 55.000 0.00 0.00 0.00 2.71
998 1027 1.389609 GGGGTGAGATGCTGCCATTG 61.390 60.000 0.00 0.00 0.00 2.82
999 1028 1.076485 GGGGTGAGATGCTGCCATT 60.076 57.895 0.00 0.00 0.00 3.16
1000 1029 1.992519 GAGGGGTGAGATGCTGCCAT 61.993 60.000 0.00 0.00 0.00 4.40
1001 1030 2.611800 AGGGGTGAGATGCTGCCA 60.612 61.111 0.00 0.00 0.00 4.92
1002 1031 2.191641 GAGGGGTGAGATGCTGCC 59.808 66.667 0.00 0.00 0.00 4.85
1003 1032 1.145819 GAGAGGGGTGAGATGCTGC 59.854 63.158 0.00 0.00 0.00 5.25
1004 1033 1.039785 TCGAGAGGGGTGAGATGCTG 61.040 60.000 0.00 0.00 0.00 4.41
1005 1034 0.324738 TTCGAGAGGGGTGAGATGCT 60.325 55.000 0.00 0.00 0.00 3.79
1006 1035 0.103937 CTTCGAGAGGGGTGAGATGC 59.896 60.000 0.00 0.00 0.00 3.91
1007 1036 0.103937 GCTTCGAGAGGGGTGAGATG 59.896 60.000 0.00 0.00 0.00 2.90
1063 1097 2.034687 GAAGCAGCCTGGGAGCAA 59.965 61.111 0.00 0.00 34.23 3.91
1100 1134 7.599998 CCCGAGAAAATGAAACAAGAAATGAAT 59.400 33.333 0.00 0.00 0.00 2.57
1116 1150 9.025041 AGTTTGATCTAAATTTCCCGAGAAAAT 57.975 29.630 0.00 0.00 44.91 1.82
1117 1151 8.404107 AGTTTGATCTAAATTTCCCGAGAAAA 57.596 30.769 0.00 0.00 44.91 2.29
1135 1195 3.588842 TCCAGATCAAGTGGGAGTTTGAT 59.411 43.478 0.00 0.00 44.39 2.57
1141 1201 1.484240 GAGGTCCAGATCAAGTGGGAG 59.516 57.143 0.00 0.00 35.58 4.30
1146 1206 3.525862 AGAAAGGAGGTCCAGATCAAGT 58.474 45.455 0.00 0.00 38.89 3.16
1153 1213 0.977395 ACGGAAGAAAGGAGGTCCAG 59.023 55.000 0.00 0.00 38.89 3.86
1158 1218 3.412386 ACAATCAACGGAAGAAAGGAGG 58.588 45.455 0.00 0.00 0.00 4.30
1166 1226 1.666888 GCCTGCAACAATCAACGGAAG 60.667 52.381 0.00 0.00 0.00 3.46
1168 1228 0.821301 TGCCTGCAACAATCAACGGA 60.821 50.000 0.00 0.00 0.00 4.69
1169 1229 0.031857 TTGCCTGCAACAATCAACGG 59.968 50.000 0.00 0.00 0.00 4.44
1171 1231 2.825205 ACTTTGCCTGCAACAATCAAC 58.175 42.857 3.64 0.00 35.46 3.18
1172 1232 3.540314 AACTTTGCCTGCAACAATCAA 57.460 38.095 3.64 0.00 35.46 2.57
1175 1235 2.037121 GGGTAACTTTGCCTGCAACAAT 59.963 45.455 3.64 0.00 35.46 2.71
1176 1236 1.410882 GGGTAACTTTGCCTGCAACAA 59.589 47.619 3.64 0.00 35.46 2.83
1177 1237 1.036707 GGGTAACTTTGCCTGCAACA 58.963 50.000 3.64 0.00 35.46 3.33
1193 1253 1.834263 CCTCTCGAAAATCTCCAGGGT 59.166 52.381 0.00 0.00 0.00 4.34
1204 1264 1.377202 GTGGCATGCCCTCTCGAAA 60.377 57.895 33.44 9.85 34.56 3.46
1216 1276 1.738099 GTCGTCGAAGCAGTGGCAT 60.738 57.895 0.00 0.00 44.61 4.40
1250 1310 0.025001 CGGTATGTTTGCGCTTCGAG 59.975 55.000 9.73 0.00 0.00 4.04
1259 1319 6.117488 AGATTTAGTAACCCCGGTATGTTTG 58.883 40.000 0.00 0.00 0.00 2.93
1297 1357 3.122278 GCATGAACTGCGACTACGTTAAA 59.878 43.478 0.00 0.00 41.97 1.52
1314 1374 5.791336 AAGGTCTCACGAATATAGCATGA 57.209 39.130 0.00 0.00 0.00 3.07
1315 1375 5.569441 CGTAAGGTCTCACGAATATAGCATG 59.431 44.000 0.00 0.00 40.56 4.06
1319 1379 5.237996 TCCACGTAAGGTCTCACGAATATAG 59.762 44.000 0.18 0.00 46.39 1.31
1333 1393 0.815734 ACACGGATCTCCACGTAAGG 59.184 55.000 0.00 0.00 42.04 2.69
1410 1470 9.393249 CTAGATCTCAATCGATCAAGACTTAAC 57.607 37.037 0.00 3.41 41.74 2.01
1411 1471 8.079203 GCTAGATCTCAATCGATCAAGACTTAA 58.921 37.037 0.00 0.01 41.74 1.85
1412 1472 7.308891 GGCTAGATCTCAATCGATCAAGACTTA 60.309 40.741 0.00 6.86 41.74 2.24
1413 1473 6.446318 GCTAGATCTCAATCGATCAAGACTT 58.554 40.000 0.00 6.23 41.74 3.01
1414 1474 5.048083 GGCTAGATCTCAATCGATCAAGACT 60.048 44.000 0.00 11.74 41.74 3.24
1415 1475 5.160641 GGCTAGATCTCAATCGATCAAGAC 58.839 45.833 0.00 6.64 41.74 3.01
1416 1476 4.829492 TGGCTAGATCTCAATCGATCAAGA 59.171 41.667 0.00 10.96 41.74 3.02
1417 1477 4.922692 GTGGCTAGATCTCAATCGATCAAG 59.077 45.833 0.00 0.00 41.74 3.02
1418 1478 4.342092 TGTGGCTAGATCTCAATCGATCAA 59.658 41.667 0.00 0.00 41.74 2.57
1419 1479 3.891366 TGTGGCTAGATCTCAATCGATCA 59.109 43.478 0.00 0.00 41.74 2.92
1420 1480 4.233789 GTGTGGCTAGATCTCAATCGATC 58.766 47.826 0.00 0.00 40.04 3.69
1421 1481 3.006323 GGTGTGGCTAGATCTCAATCGAT 59.994 47.826 0.00 0.00 36.97 3.59
1422 1482 2.362397 GGTGTGGCTAGATCTCAATCGA 59.638 50.000 0.00 0.00 36.97 3.59
1423 1483 2.363680 AGGTGTGGCTAGATCTCAATCG 59.636 50.000 0.00 0.00 36.97 3.34
1426 1486 4.402793 GTCTAAGGTGTGGCTAGATCTCAA 59.597 45.833 0.00 0.00 0.00 3.02
1435 1495 3.519510 ACACATATGTCTAAGGTGTGGCT 59.480 43.478 5.07 0.00 43.23 4.75
1439 1499 6.530120 TCACAAACACATATGTCTAAGGTGT 58.470 36.000 5.07 2.25 43.93 4.16
1444 1504 8.556194 GTCACTTTCACAAACACATATGTCTAA 58.444 33.333 5.07 0.00 38.45 2.10
1447 1507 5.845953 CGTCACTTTCACAAACACATATGTC 59.154 40.000 5.07 0.00 38.45 3.06
1453 1513 2.092995 CGTCGTCACTTTCACAAACACA 59.907 45.455 0.00 0.00 0.00 3.72
1454 1514 2.093152 ACGTCGTCACTTTCACAAACAC 59.907 45.455 0.00 0.00 0.00 3.32
1474 1534 9.090692 AGTTTCAAACACCATATATGTACGTAC 57.909 33.333 18.90 18.90 0.00 3.67
1475 1535 9.089601 CAGTTTCAAACACCATATATGTACGTA 57.910 33.333 11.73 0.00 0.00 3.57
1476 1536 7.413657 GCAGTTTCAAACACCATATATGTACGT 60.414 37.037 11.73 0.00 0.00 3.57
1477 1537 6.905076 GCAGTTTCAAACACCATATATGTACG 59.095 38.462 11.73 2.39 0.00 3.67
1478 1538 7.067008 AGGCAGTTTCAAACACCATATATGTAC 59.933 37.037 11.73 0.00 33.65 2.90
1505 1565 1.269569 CCTTCAAAGTTTTCGGCCCAC 60.270 52.381 0.00 0.00 0.00 4.61
1749 1809 2.422832 ACGTATGTCGAAGGTTCCTCTC 59.577 50.000 0.00 0.00 42.86 3.20
1936 2017 2.202492 CGACGCGGAGACAAGGAG 60.202 66.667 12.47 0.00 0.00 3.69
1970 2051 2.728318 CGTAAGATCACCATCGCTCATG 59.272 50.000 0.00 0.00 43.02 3.07
1998 2079 9.703892 CCTGAAACCAAAATCATTACAAATACA 57.296 29.630 0.00 0.00 0.00 2.29
2032 2116 5.178096 ACAATATGCGGATCATGGGATAA 57.822 39.130 0.00 0.00 36.63 1.75
2037 2121 6.183360 GGAGAATTACAATATGCGGATCATGG 60.183 42.308 0.00 0.00 36.63 3.66
2038 2122 6.183360 GGGAGAATTACAATATGCGGATCATG 60.183 42.308 0.00 0.00 36.63 3.07
2039 2123 5.882557 GGGAGAATTACAATATGCGGATCAT 59.117 40.000 0.00 0.00 39.17 2.45
2040 2124 5.013079 AGGGAGAATTACAATATGCGGATCA 59.987 40.000 0.00 0.00 0.00 2.92
2041 2125 5.491982 AGGGAGAATTACAATATGCGGATC 58.508 41.667 0.00 0.00 0.00 3.36
2165 2255 5.282055 TGCTAGGTAAATCTCAGTCATGG 57.718 43.478 0.00 0.00 0.00 3.66
2201 2291 4.971220 GCTTGGTGCAAATGAACATTTTTG 59.029 37.500 9.63 3.86 38.84 2.44
2231 2321 3.056536 TCCTGTCAAATTCTCTCGTCAGG 60.057 47.826 0.00 0.00 41.47 3.86
2247 2337 8.948631 TTGAGTGAATTGAACTATATCCTGTC 57.051 34.615 0.00 0.00 0.00 3.51
2248 2338 8.762645 TCTTGAGTGAATTGAACTATATCCTGT 58.237 33.333 0.00 0.00 0.00 4.00
2254 2344 9.475620 TCCTACTCTTGAGTGAATTGAACTATA 57.524 33.333 12.99 0.00 0.00 1.31
2256 2346 7.670140 TCTCCTACTCTTGAGTGAATTGAACTA 59.330 37.037 12.99 0.00 0.00 2.24
2257 2347 6.495181 TCTCCTACTCTTGAGTGAATTGAACT 59.505 38.462 12.99 0.00 0.00 3.01
2310 2413 5.073311 TGTAGCTCTAGCATTTTCGTTCT 57.927 39.130 4.54 0.00 45.16 3.01
2315 2418 5.118990 TCCACATGTAGCTCTAGCATTTTC 58.881 41.667 0.00 0.00 45.16 2.29
2372 2475 7.775120 TGTTCAGCATTCTTTTCTCTCTTTTT 58.225 30.769 0.00 0.00 0.00 1.94
2373 2476 7.284034 TCTGTTCAGCATTCTTTTCTCTCTTTT 59.716 33.333 0.00 0.00 0.00 2.27
2374 2477 6.769822 TCTGTTCAGCATTCTTTTCTCTCTTT 59.230 34.615 0.00 0.00 0.00 2.52
2375 2478 6.204495 GTCTGTTCAGCATTCTTTTCTCTCTT 59.796 38.462 0.00 0.00 0.00 2.85
2376 2479 5.700373 GTCTGTTCAGCATTCTTTTCTCTCT 59.300 40.000 0.00 0.00 0.00 3.10
2377 2480 5.389307 CGTCTGTTCAGCATTCTTTTCTCTC 60.389 44.000 0.00 0.00 0.00 3.20
2378 2481 4.450419 CGTCTGTTCAGCATTCTTTTCTCT 59.550 41.667 0.00 0.00 0.00 3.10
2379 2482 4.212214 ACGTCTGTTCAGCATTCTTTTCTC 59.788 41.667 0.00 0.00 0.00 2.87
2442 2545 4.907809 AGGGAGTACTTTTTAGTGAAGCC 58.092 43.478 0.00 0.00 0.00 4.35
2564 2675 5.389935 GCTTCTCAGTAACAAGCATGTACAC 60.390 44.000 0.00 0.00 41.87 2.90
2708 2820 1.277842 TGCGCTCCAGTAGGAAAATGA 59.722 47.619 9.73 0.00 45.19 2.57
2729 2841 2.375110 CGCGCATATGGTTGATGTTTC 58.625 47.619 8.75 0.00 0.00 2.78
2733 2845 0.235665 GTCCGCGCATATGGTTGATG 59.764 55.000 8.75 0.00 0.00 3.07
2737 2849 1.078072 TTGGTCCGCGCATATGGTT 60.078 52.632 8.75 0.00 0.00 3.67
2743 2855 1.599518 TTTGAGTTGGTCCGCGCAT 60.600 52.632 8.75 0.00 0.00 4.73
2748 2860 1.515521 GCCCTGTTTGAGTTGGTCCG 61.516 60.000 0.00 0.00 0.00 4.79
2789 2901 9.639601 GTTGTAAGCAATATTTAGCCTCTTTTT 57.360 29.630 0.00 0.00 36.92 1.94
2790 2902 8.251026 GGTTGTAAGCAATATTTAGCCTCTTTT 58.749 33.333 0.00 0.00 36.92 2.27
2791 2903 7.396055 TGGTTGTAAGCAATATTTAGCCTCTTT 59.604 33.333 0.00 0.00 36.92 2.52
2792 2904 6.889722 TGGTTGTAAGCAATATTTAGCCTCTT 59.110 34.615 0.00 0.00 36.92 2.85
2793 2905 6.423182 TGGTTGTAAGCAATATTTAGCCTCT 58.577 36.000 0.00 0.00 36.92 3.69
2794 2906 6.693315 TGGTTGTAAGCAATATTTAGCCTC 57.307 37.500 0.00 0.00 36.92 4.70
2806 2918 3.153919 GAGGTCCAATTGGTTGTAAGCA 58.846 45.455 23.76 0.00 36.34 3.91
2807 2919 3.421844 AGAGGTCCAATTGGTTGTAAGC 58.578 45.455 23.76 13.56 36.34 3.09
2808 2920 5.411669 GTGTAGAGGTCCAATTGGTTGTAAG 59.588 44.000 23.76 0.00 36.34 2.34
2809 2921 5.163184 TGTGTAGAGGTCCAATTGGTTGTAA 60.163 40.000 23.76 1.13 36.34 2.41
2810 2922 4.348461 TGTGTAGAGGTCCAATTGGTTGTA 59.652 41.667 23.76 10.86 36.34 2.41
2811 2923 3.137544 TGTGTAGAGGTCCAATTGGTTGT 59.862 43.478 23.76 11.77 36.34 3.32
2812 2924 3.750371 TGTGTAGAGGTCCAATTGGTTG 58.250 45.455 23.76 0.00 36.34 3.77
2813 2925 4.042809 TCATGTGTAGAGGTCCAATTGGTT 59.957 41.667 23.76 11.05 36.34 3.67
2814 2926 3.587061 TCATGTGTAGAGGTCCAATTGGT 59.413 43.478 23.76 4.96 36.34 3.67
2815 2927 4.194640 CTCATGTGTAGAGGTCCAATTGG 58.805 47.826 19.08 19.08 0.00 3.16
2816 2928 3.624861 GCTCATGTGTAGAGGTCCAATTG 59.375 47.826 0.00 0.00 33.72 2.32
2837 2949 0.038159 CTATAGGGCCGTAGCTGTGC 60.038 60.000 11.42 0.00 39.73 4.57
2883 2995 6.997239 AAATGGTTTCTACGGGAAATACTC 57.003 37.500 8.60 0.00 44.46 2.59
2890 3002 6.302535 TGATCTAAAATGGTTTCTACGGGA 57.697 37.500 0.00 0.00 0.00 5.14
2902 3014 9.149225 GTAGCACCATCTCTATGATCTAAAATG 57.851 37.037 0.00 0.00 34.84 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.