Multiple sequence alignment - TraesCS1D01G227000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G227000 chr1D 100.000 1857 0 0 451 2307 315616331 315618187 0.000000e+00 3430.0
1 TraesCS1D01G227000 chr1D 82.657 715 87 25 863 1540 315643316 315644030 1.180000e-167 599.0
2 TraesCS1D01G227000 chr1D 82.295 706 77 21 863 1550 315640240 315640915 3.330000e-158 568.0
3 TraesCS1D01G227000 chr1D 97.917 144 2 1 451 593 81175927 81175784 4.920000e-62 248.0
4 TraesCS1D01G227000 chr1D 100.000 73 0 0 1 73 315615881 315615953 4.000000e-28 135.0
5 TraesCS1D01G227000 chr1A 93.072 1328 71 15 686 1999 396262103 396263423 0.000000e+00 1923.0
6 TraesCS1D01G227000 chr1A 83.780 709 76 23 863 1550 396283009 396283699 8.990000e-179 636.0
7 TraesCS1D01G227000 chr1A 81.077 724 82 34 863 1540 396285662 396286376 5.650000e-146 527.0
8 TraesCS1D01G227000 chr1A 87.658 316 24 5 1995 2305 396272212 396272517 1.010000e-93 353.0
9 TraesCS1D01G227000 chr1A 82.317 164 25 4 591 753 53038447 53038287 3.090000e-29 139.0
10 TraesCS1D01G227000 chr1B 88.706 1213 107 17 1107 2305 427771178 427772374 0.000000e+00 1454.0
11 TraesCS1D01G227000 chr1B 92.164 855 48 7 745 1583 427522870 427523721 0.000000e+00 1190.0
12 TraesCS1D01G227000 chr1B 88.536 724 62 12 1585 2305 427523749 427524454 0.000000e+00 857.0
13 TraesCS1D01G227000 chr1B 85.399 726 71 21 845 1550 427543028 427543738 0.000000e+00 721.0
14 TraesCS1D01G227000 chr1B 90.551 508 47 1 598 1105 427756880 427757386 0.000000e+00 671.0
15 TraesCS1D01G227000 chr1B 80.540 704 83 31 869 1535 427774013 427774699 2.060000e-135 492.0
16 TraesCS1D01G227000 chr1B 81.045 670 79 32 877 1513 427525770 427526424 7.410000e-135 490.0
17 TraesCS1D01G227000 chr1B 96.429 140 5 0 452 591 305281155 305281016 4.960000e-57 231.0
18 TraesCS1D01G227000 chr7D 99.265 136 1 0 455 590 422154955 422154820 1.770000e-61 246.0
19 TraesCS1D01G227000 chr7D 81.761 159 21 4 591 749 379571791 379571641 2.410000e-25 126.0
20 TraesCS1D01G227000 chr3B 97.122 139 4 0 452 590 405420281 405420143 3.830000e-58 235.0
21 TraesCS1D01G227000 chr3B 93.878 147 8 1 452 597 204952764 204952910 1.070000e-53 220.0
22 TraesCS1D01G227000 chr5A 96.403 139 5 0 452 590 26577536 26577398 1.780000e-56 230.0
23 TraesCS1D01G227000 chr3D 96.403 139 4 1 451 589 76668971 76669108 6.410000e-56 228.0
24 TraesCS1D01G227000 chr7B 93.878 147 8 1 452 597 10605010 10604864 1.070000e-53 220.0
25 TraesCS1D01G227000 chr4B 94.326 141 8 0 452 592 165351464 165351604 1.390000e-52 217.0
26 TraesCS1D01G227000 chr5B 86.364 154 21 0 591 744 631946401 631946248 3.940000e-38 169.0
27 TraesCS1D01G227000 chr5D 82.584 178 22 8 575 749 339974819 339974990 5.140000e-32 148.0
28 TraesCS1D01G227000 chr5D 82.857 140 21 3 607 745 409527707 409527570 3.110000e-24 122.0
29 TraesCS1D01G227000 chrUn 84.932 146 18 3 575 719 82648886 82649028 6.640000e-31 145.0
30 TraesCS1D01G227000 chr7A 85.507 138 20 0 591 728 85713571 85713434 6.640000e-31 145.0
31 TraesCS1D01G227000 chr2B 86.719 128 17 0 608 735 383358371 383358498 2.390000e-30 143.0
32 TraesCS1D01G227000 chr2B 86.154 65 9 0 7 71 760952738 760952674 1.140000e-08 71.3
33 TraesCS1D01G227000 chr2B 83.871 62 10 0 1 62 150342135 150342074 2.480000e-05 60.2
34 TraesCS1D01G227000 chr2D 100.000 29 0 0 45 73 98711650 98711622 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G227000 chr1D 315615881 315618187 2306 False 1782.500000 3430 100.000000 1 2307 2 chr1D.!!$F1 2306
1 TraesCS1D01G227000 chr1D 315640240 315644030 3790 False 583.500000 599 82.476000 863 1550 2 chr1D.!!$F2 687
2 TraesCS1D01G227000 chr1A 396262103 396263423 1320 False 1923.000000 1923 93.072000 686 1999 1 chr1A.!!$F1 1313
3 TraesCS1D01G227000 chr1A 396283009 396286376 3367 False 581.500000 636 82.428500 863 1550 2 chr1A.!!$F3 687
4 TraesCS1D01G227000 chr1B 427771178 427774699 3521 False 973.000000 1454 84.623000 869 2305 2 chr1B.!!$F4 1436
5 TraesCS1D01G227000 chr1B 427522870 427526424 3554 False 845.666667 1190 87.248333 745 2305 3 chr1B.!!$F3 1560
6 TraesCS1D01G227000 chr1B 427543028 427543738 710 False 721.000000 721 85.399000 845 1550 1 chr1B.!!$F1 705
7 TraesCS1D01G227000 chr1B 427756880 427757386 506 False 671.000000 671 90.551000 598 1105 1 chr1B.!!$F2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 565 0.178903 ACTACACTTGGCCCTCCTCA 60.179 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1912 3939 0.539518 ACCCTTGTTGTTTGGTTGCC 59.46 50.0 0.0 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.369394 GTCCTTTGGGTCCTTAGCATG 58.631 52.381 0.00 0.00 0.00 4.06
21 22 2.026262 GTCCTTTGGGTCCTTAGCATGA 60.026 50.000 0.00 0.00 0.00 3.07
22 23 2.852449 TCCTTTGGGTCCTTAGCATGAT 59.148 45.455 0.00 0.00 0.00 2.45
23 24 2.954318 CCTTTGGGTCCTTAGCATGATG 59.046 50.000 0.00 0.00 0.00 3.07
24 25 3.371917 CCTTTGGGTCCTTAGCATGATGA 60.372 47.826 0.00 0.00 0.00 2.92
25 26 3.281727 TTGGGTCCTTAGCATGATGAC 57.718 47.619 0.00 0.00 0.00 3.06
27 28 2.171237 TGGGTCCTTAGCATGATGACTG 59.829 50.000 0.00 0.00 0.00 3.51
28 29 2.216898 GGTCCTTAGCATGATGACTGC 58.783 52.381 0.00 0.00 39.97 4.40
30 31 3.129871 GTCCTTAGCATGATGACTGCTC 58.870 50.000 0.00 0.00 46.79 4.26
32 33 2.133553 CTTAGCATGATGACTGCTCGG 58.866 52.381 0.00 0.00 46.79 4.63
33 34 1.114627 TAGCATGATGACTGCTCGGT 58.885 50.000 0.00 0.00 46.79 4.69
34 35 0.251354 AGCATGATGACTGCTCGGTT 59.749 50.000 0.00 0.00 46.79 4.44
36 37 1.730501 CATGATGACTGCTCGGTTGT 58.269 50.000 0.00 0.00 0.00 3.32
37 38 1.662629 CATGATGACTGCTCGGTTGTC 59.337 52.381 0.00 0.00 0.00 3.18
38 39 0.969149 TGATGACTGCTCGGTTGTCT 59.031 50.000 0.00 0.00 0.00 3.41
39 40 2.167662 TGATGACTGCTCGGTTGTCTA 58.832 47.619 0.00 0.00 0.00 2.59
40 41 2.094700 TGATGACTGCTCGGTTGTCTAC 60.095 50.000 0.00 0.00 0.00 2.59
41 42 1.617322 TGACTGCTCGGTTGTCTACT 58.383 50.000 0.00 0.00 0.00 2.57
42 43 2.786777 TGACTGCTCGGTTGTCTACTA 58.213 47.619 0.00 0.00 0.00 1.82
44 45 2.486982 GACTGCTCGGTTGTCTACTACA 59.513 50.000 0.00 0.00 35.88 2.74
45 46 2.889045 ACTGCTCGGTTGTCTACTACAA 59.111 45.455 0.00 0.00 45.90 2.41
58 59 6.978338 TGTCTACTACAAGTCTACAACAAGG 58.022 40.000 0.00 0.00 34.29 3.61
59 60 6.548622 TGTCTACTACAAGTCTACAACAAGGT 59.451 38.462 0.00 0.00 34.29 3.50
60 61 7.069085 TGTCTACTACAAGTCTACAACAAGGTT 59.931 37.037 0.00 0.00 34.29 3.50
61 62 7.924947 GTCTACTACAAGTCTACAACAAGGTTT 59.075 37.037 0.00 0.00 0.00 3.27
62 63 6.920569 ACTACAAGTCTACAACAAGGTTTG 57.079 37.500 0.00 0.00 0.00 2.93
64 65 5.813080 ACAAGTCTACAACAAGGTTTGTC 57.187 39.130 0.00 0.00 44.59 3.18
67 68 2.546789 GTCTACAACAAGGTTTGTCCGG 59.453 50.000 0.00 0.00 44.59 5.14
69 70 0.395173 ACAACAAGGTTTGTCCGGCT 60.395 50.000 0.00 0.00 44.59 5.52
72 73 2.032071 AAGGTTTGTCCGGCTCCG 59.968 61.111 0.00 0.48 41.99 4.63
475 476 8.378172 GATTGTTGTATTAAGCCTAGTATGCA 57.622 34.615 0.00 0.00 0.00 3.96
476 477 8.924511 ATTGTTGTATTAAGCCTAGTATGCAT 57.075 30.769 3.79 3.79 0.00 3.96
477 478 7.728847 TGTTGTATTAAGCCTAGTATGCATG 57.271 36.000 10.16 0.00 0.00 4.06
478 479 6.204688 TGTTGTATTAAGCCTAGTATGCATGC 59.795 38.462 11.82 11.82 0.00 4.06
479 480 6.114187 TGTATTAAGCCTAGTATGCATGCT 57.886 37.500 21.37 21.37 0.00 3.79
481 482 7.676004 TGTATTAAGCCTAGTATGCATGCTAA 58.324 34.615 22.54 11.10 0.00 3.09
482 483 8.321353 TGTATTAAGCCTAGTATGCATGCTAAT 58.679 33.333 22.54 16.50 0.00 1.73
484 485 8.954950 ATTAAGCCTAGTATGCATGCTAATAG 57.045 34.615 22.54 18.43 0.00 1.73
485 486 6.611613 AAGCCTAGTATGCATGCTAATAGA 57.388 37.500 22.54 5.15 0.00 1.98
486 487 6.805016 AGCCTAGTATGCATGCTAATAGAT 57.195 37.500 22.54 12.04 0.00 1.98
487 488 6.580788 AGCCTAGTATGCATGCTAATAGATG 58.419 40.000 22.54 11.48 0.00 2.90
488 489 6.155910 AGCCTAGTATGCATGCTAATAGATGT 59.844 38.462 22.54 6.82 0.00 3.06
490 491 7.436673 GCCTAGTATGCATGCTAATAGATGTAC 59.563 40.741 22.54 2.93 0.00 2.90
491 492 8.470002 CCTAGTATGCATGCTAATAGATGTACA 58.530 37.037 22.54 0.00 0.00 2.90
492 493 9.860898 CTAGTATGCATGCTAATAGATGTACAA 57.139 33.333 22.54 1.10 0.00 2.41
494 495 9.159364 AGTATGCATGCTAATAGATGTACAATG 57.841 33.333 20.33 0.00 0.00 2.82
495 496 6.806388 TGCATGCTAATAGATGTACAATGG 57.194 37.500 20.33 0.00 0.00 3.16
496 497 6.298361 TGCATGCTAATAGATGTACAATGGT 58.702 36.000 20.33 0.00 0.00 3.55
497 498 6.772233 TGCATGCTAATAGATGTACAATGGTT 59.228 34.615 20.33 0.00 0.00 3.67
498 499 7.080099 GCATGCTAATAGATGTACAATGGTTG 58.920 38.462 11.37 0.00 0.00 3.77
499 500 6.618287 TGCTAATAGATGTACAATGGTTGC 57.382 37.500 0.00 0.48 0.00 4.17
500 501 6.118852 TGCTAATAGATGTACAATGGTTGCA 58.881 36.000 0.00 3.23 0.00 4.08
502 503 7.121907 TGCTAATAGATGTACAATGGTTGCAAA 59.878 33.333 0.00 0.00 0.00 3.68
503 504 7.973388 GCTAATAGATGTACAATGGTTGCAAAA 59.027 33.333 0.00 0.00 0.00 2.44
504 505 9.853555 CTAATAGATGTACAATGGTTGCAAAAA 57.146 29.630 0.00 0.00 0.00 1.94
506 507 8.706492 ATAGATGTACAATGGTTGCAAAAATG 57.294 30.769 0.00 0.72 0.00 2.32
507 508 6.757237 AGATGTACAATGGTTGCAAAAATGA 58.243 32.000 0.00 0.00 0.00 2.57
508 509 7.388437 AGATGTACAATGGTTGCAAAAATGAT 58.612 30.769 0.00 0.00 0.00 2.45
509 510 6.782298 TGTACAATGGTTGCAAAAATGATG 57.218 33.333 0.00 0.00 0.00 3.07
510 511 6.286758 TGTACAATGGTTGCAAAAATGATGT 58.713 32.000 0.00 4.97 0.00 3.06
513 514 7.982761 ACAATGGTTGCAAAAATGATGTATT 57.017 28.000 0.00 0.00 0.00 1.89
514 515 8.031848 ACAATGGTTGCAAAAATGATGTATTC 57.968 30.769 0.00 0.00 0.00 1.75
515 516 7.879160 ACAATGGTTGCAAAAATGATGTATTCT 59.121 29.630 0.00 0.00 0.00 2.40
517 518 9.941325 AATGGTTGCAAAAATGATGTATTCTTA 57.059 25.926 0.00 0.00 0.00 2.10
519 520 9.368674 TGGTTGCAAAAATGATGTATTCTTATG 57.631 29.630 0.00 0.00 0.00 1.90
520 521 9.585099 GGTTGCAAAAATGATGTATTCTTATGA 57.415 29.630 0.00 0.00 0.00 2.15
522 523 8.861033 TGCAAAAATGATGTATTCTTATGAGC 57.139 30.769 0.00 0.00 0.00 4.26
523 524 8.689061 TGCAAAAATGATGTATTCTTATGAGCT 58.311 29.630 0.00 0.00 0.00 4.09
524 525 8.965172 GCAAAAATGATGTATTCTTATGAGCTG 58.035 33.333 0.00 0.00 0.00 4.24
525 526 9.459640 CAAAAATGATGTATTCTTATGAGCTGG 57.540 33.333 0.00 0.00 0.00 4.85
526 527 6.814506 AATGATGTATTCTTATGAGCTGGC 57.185 37.500 0.00 0.00 0.00 4.85
527 528 4.645535 TGATGTATTCTTATGAGCTGGCC 58.354 43.478 0.00 0.00 0.00 5.36
528 529 3.492102 TGTATTCTTATGAGCTGGCCC 57.508 47.619 0.00 0.00 0.00 5.80
529 530 3.048600 TGTATTCTTATGAGCTGGCCCT 58.951 45.455 0.00 0.00 0.00 5.19
531 532 0.839946 TTCTTATGAGCTGGCCCTCC 59.160 55.000 0.00 0.00 0.00 4.30
532 533 1.056700 TCTTATGAGCTGGCCCTCCC 61.057 60.000 0.00 0.00 0.00 4.30
533 534 1.004758 TTATGAGCTGGCCCTCCCT 59.995 57.895 0.00 0.00 0.00 4.20
534 535 0.267658 TTATGAGCTGGCCCTCCCTA 59.732 55.000 0.00 0.00 0.00 3.53
535 536 0.178921 TATGAGCTGGCCCTCCCTAG 60.179 60.000 0.00 0.00 0.00 3.02
536 537 3.555324 GAGCTGGCCCTCCCTAGC 61.555 72.222 0.00 0.10 37.75 3.42
537 538 4.421554 AGCTGGCCCTCCCTAGCA 62.422 66.667 12.55 0.00 39.04 3.49
538 539 3.871395 GCTGGCCCTCCCTAGCAG 61.871 72.222 0.00 0.00 37.55 4.24
539 540 3.167105 CTGGCCCTCCCTAGCAGG 61.167 72.222 0.00 0.00 34.30 4.85
554 555 5.360591 CCTAGCAGGGATTTACTACACTTG 58.639 45.833 0.00 0.00 0.00 3.16
555 556 4.222124 AGCAGGGATTTACTACACTTGG 57.778 45.455 0.00 0.00 0.00 3.61
556 557 2.683362 GCAGGGATTTACTACACTTGGC 59.317 50.000 0.00 0.00 0.00 4.52
557 558 3.279434 CAGGGATTTACTACACTTGGCC 58.721 50.000 0.00 0.00 0.00 5.36
558 559 2.241430 AGGGATTTACTACACTTGGCCC 59.759 50.000 0.00 0.00 0.00 5.80
559 560 2.241430 GGGATTTACTACACTTGGCCCT 59.759 50.000 0.00 0.00 0.00 5.19
560 561 3.542648 GGATTTACTACACTTGGCCCTC 58.457 50.000 0.00 0.00 0.00 4.30
561 562 3.542648 GATTTACTACACTTGGCCCTCC 58.457 50.000 0.00 0.00 0.00 4.30
563 564 1.861982 TACTACACTTGGCCCTCCTC 58.138 55.000 0.00 0.00 0.00 3.71
564 565 0.178903 ACTACACTTGGCCCTCCTCA 60.179 55.000 0.00 0.00 0.00 3.86
565 566 1.207791 CTACACTTGGCCCTCCTCAT 58.792 55.000 0.00 0.00 0.00 2.90
566 567 2.292918 ACTACACTTGGCCCTCCTCATA 60.293 50.000 0.00 0.00 0.00 2.15
569 570 2.292918 ACACTTGGCCCTCCTCATACTA 60.293 50.000 0.00 0.00 0.00 1.82
570 571 2.975489 CACTTGGCCCTCCTCATACTAT 59.025 50.000 0.00 0.00 0.00 2.12
571 572 4.160329 CACTTGGCCCTCCTCATACTATA 58.840 47.826 0.00 0.00 0.00 1.31
572 573 4.780021 CACTTGGCCCTCCTCATACTATAT 59.220 45.833 0.00 0.00 0.00 0.86
573 574 5.249393 CACTTGGCCCTCCTCATACTATATT 59.751 44.000 0.00 0.00 0.00 1.28
574 575 5.485708 ACTTGGCCCTCCTCATACTATATTC 59.514 44.000 0.00 0.00 0.00 1.75
575 576 4.362677 TGGCCCTCCTCATACTATATTCC 58.637 47.826 0.00 0.00 0.00 3.01
576 577 4.047265 TGGCCCTCCTCATACTATATTCCT 59.953 45.833 0.00 0.00 0.00 3.36
578 579 4.407296 GCCCTCCTCATACTATATTCCTGG 59.593 50.000 0.00 0.00 0.00 4.45
579 580 4.407296 CCCTCCTCATACTATATTCCTGGC 59.593 50.000 0.00 0.00 0.00 4.85
580 581 5.276440 CCTCCTCATACTATATTCCTGGCT 58.724 45.833 0.00 0.00 0.00 4.75
581 582 5.362430 CCTCCTCATACTATATTCCTGGCTC 59.638 48.000 0.00 0.00 0.00 4.70
582 583 5.273208 TCCTCATACTATATTCCTGGCTCC 58.727 45.833 0.00 0.00 0.00 4.70
584 585 3.447586 TCATACTATATTCCTGGCTCCGC 59.552 47.826 0.00 0.00 0.00 5.54
642 643 1.278238 GGCTCCGATGTTTGTAGTCG 58.722 55.000 0.00 0.00 35.29 4.18
719 720 9.625747 TTCTGTACTGCCATAATTGATGAATAA 57.374 29.630 0.00 0.00 37.82 1.40
827 830 6.019881 GCGCCATTGGATGAAAAATAACTTAC 60.020 38.462 6.95 0.00 0.00 2.34
890 2859 0.681564 AACGCCCTTTCCAACACACA 60.682 50.000 0.00 0.00 0.00 3.72
959 2930 2.225091 ACTGCTCACCATCCCAATCAAA 60.225 45.455 0.00 0.00 0.00 2.69
1123 3108 7.880195 ACTGAGTAGTTGAGCTGATTATTTTGT 59.120 33.333 0.00 0.00 31.66 2.83
1151 3136 2.771372 TGATGCAGCAAGATGTACCCTA 59.229 45.455 0.00 0.00 0.00 3.53
1155 3140 3.198872 GCAGCAAGATGTACCCTAACTC 58.801 50.000 0.00 0.00 0.00 3.01
1340 3328 0.961019 ATGCGCTTGTGGTGATTGTT 59.039 45.000 9.73 0.00 0.00 2.83
1519 3510 7.442969 TGAAGTGAATATACAAAACAGGTTCGT 59.557 33.333 0.00 0.00 0.00 3.85
1675 3700 7.571025 ACTCTACAAAGGGTTTGAAAGTAGAA 58.429 34.615 6.40 0.00 43.26 2.10
1677 3702 8.446599 TCTACAAAGGGTTTGAAAGTAGAAAG 57.553 34.615 6.40 0.00 43.26 2.62
1763 3790 9.149225 TGTGTTATTACCATGCAATTTGAAATC 57.851 29.630 0.00 0.00 0.00 2.17
1910 3937 2.045340 GCACACCGGGCCTTATGT 60.045 61.111 6.32 1.00 0.00 2.29
1912 3939 0.814010 GCACACCGGGCCTTATGTAG 60.814 60.000 6.32 1.49 0.00 2.74
1951 3978 2.614983 GTTTGACTCGTTTGGGCTTGTA 59.385 45.455 0.00 0.00 0.00 2.41
2021 4048 6.798482 AGCATGTATGTTGGTTGTATCATTG 58.202 36.000 0.00 0.00 0.00 2.82
2022 4049 6.377996 AGCATGTATGTTGGTTGTATCATTGT 59.622 34.615 0.00 0.00 0.00 2.71
2027 4054 8.079203 TGTATGTTGGTTGTATCATTGTTTGAC 58.921 33.333 0.00 0.00 37.11 3.18
2048 4076 7.776933 TGACATACTTACATCAGAATTCAGC 57.223 36.000 8.44 0.00 0.00 4.26
2071 4099 4.503296 CGGTTGGGAGACATTAGATAAGGG 60.503 50.000 0.00 0.00 0.00 3.95
2073 4101 5.104067 GGTTGGGAGACATTAGATAAGGGTT 60.104 44.000 0.00 0.00 0.00 4.11
2086 4114 6.300354 AGATAAGGGTTTATTTGATTCGCG 57.700 37.500 0.00 0.00 29.67 5.87
2093 4121 4.201871 GGTTTATTTGATTCGCGTGATCCA 60.202 41.667 17.87 8.28 0.00 3.41
2094 4122 5.505654 GGTTTATTTGATTCGCGTGATCCAT 60.506 40.000 17.87 13.51 0.00 3.41
2150 4178 2.374839 TGTCATGTCCACTTGAATCCCA 59.625 45.455 0.00 0.00 32.82 4.37
2151 4179 2.749621 GTCATGTCCACTTGAATCCCAC 59.250 50.000 0.00 0.00 32.82 4.61
2154 4182 1.001974 TGTCCACTTGAATCCCACGAG 59.998 52.381 0.00 0.00 0.00 4.18
2156 4184 2.093447 GTCCACTTGAATCCCACGAGAT 60.093 50.000 0.00 0.00 0.00 2.75
2158 4186 2.679837 CCACTTGAATCCCACGAGATTG 59.320 50.000 5.13 0.00 36.60 2.67
2168 4196 2.017049 CCACGAGATTGAATTCCCACC 58.983 52.381 2.27 0.00 0.00 4.61
2172 4200 3.009033 ACGAGATTGAATTCCCACCAAGA 59.991 43.478 2.27 0.00 0.00 3.02
2173 4201 4.202441 CGAGATTGAATTCCCACCAAGAT 58.798 43.478 2.27 0.00 0.00 2.40
2174 4202 4.641989 CGAGATTGAATTCCCACCAAGATT 59.358 41.667 2.27 0.00 0.00 2.40
2175 4203 5.126061 CGAGATTGAATTCCCACCAAGATTT 59.874 40.000 2.27 0.00 0.00 2.17
2176 4204 6.290294 AGATTGAATTCCCACCAAGATTTG 57.710 37.500 2.27 0.00 0.00 2.32
2177 4205 3.959535 TGAATTCCCACCAAGATTTGC 57.040 42.857 2.27 0.00 0.00 3.68
2178 4206 2.566724 TGAATTCCCACCAAGATTTGCC 59.433 45.455 2.27 0.00 0.00 4.52
2179 4207 2.629017 ATTCCCACCAAGATTTGCCT 57.371 45.000 0.00 0.00 0.00 4.75
2180 4208 3.756082 ATTCCCACCAAGATTTGCCTA 57.244 42.857 0.00 0.00 0.00 3.93
2186 4214 4.222588 CCCACCAAGATTTGCCTAATTTCA 59.777 41.667 0.00 0.00 0.00 2.69
2196 4224 5.713792 TTGCCTAATTTCATCGTGGAAAA 57.286 34.783 7.99 0.00 39.94 2.29
2259 4287 6.403866 TTGAAATACAGTGCAAAGGAACAT 57.596 33.333 0.00 0.00 0.00 2.71
2288 4316 4.023739 AGTTCTACAAACCAAACAACGC 57.976 40.909 0.00 0.00 0.00 4.84
2305 4333 5.270853 ACAACGCACTTGAAAATGTTACTC 58.729 37.500 0.00 0.00 33.59 2.59
2306 4334 5.065988 ACAACGCACTTGAAAATGTTACTCT 59.934 36.000 0.00 0.00 33.59 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.026262 TCATGCTAAGGACCCAAAGGAC 60.026 50.000 0.00 0.00 36.73 3.85
2 3 2.806945 TCATGCTAAGGACCCAAAGG 57.193 50.000 0.00 0.00 40.04 3.11
4 5 3.266772 AGTCATCATGCTAAGGACCCAAA 59.733 43.478 0.00 0.00 0.00 3.28
5 6 2.846206 AGTCATCATGCTAAGGACCCAA 59.154 45.455 0.00 0.00 0.00 4.12
8 9 2.216898 GCAGTCATCATGCTAAGGACC 58.783 52.381 0.00 0.00 40.59 4.46
17 18 1.662629 GACAACCGAGCAGTCATCATG 59.337 52.381 0.00 0.00 32.68 3.07
18 19 1.552337 AGACAACCGAGCAGTCATCAT 59.448 47.619 0.00 0.00 34.80 2.45
20 21 2.164624 AGTAGACAACCGAGCAGTCATC 59.835 50.000 0.00 0.00 34.80 2.92
21 22 2.171840 AGTAGACAACCGAGCAGTCAT 58.828 47.619 0.00 0.00 34.80 3.06
22 23 1.617322 AGTAGACAACCGAGCAGTCA 58.383 50.000 0.00 0.00 34.80 3.41
23 24 2.486982 TGTAGTAGACAACCGAGCAGTC 59.513 50.000 0.00 0.00 34.15 3.51
24 25 2.511659 TGTAGTAGACAACCGAGCAGT 58.488 47.619 0.00 0.00 34.15 4.40
25 26 3.057456 ACTTGTAGTAGACAACCGAGCAG 60.057 47.826 0.00 0.00 43.30 4.24
27 28 3.190953 AGACTTGTAGTAGACAACCGAGC 59.809 47.826 0.00 0.00 43.30 5.03
28 29 5.410746 TGTAGACTTGTAGTAGACAACCGAG 59.589 44.000 0.00 0.00 43.30 4.63
29 30 5.308014 TGTAGACTTGTAGTAGACAACCGA 58.692 41.667 0.00 0.00 43.30 4.69
30 31 5.618056 TGTAGACTTGTAGTAGACAACCG 57.382 43.478 0.00 0.00 43.30 4.44
32 33 7.381678 CCTTGTTGTAGACTTGTAGTAGACAAC 59.618 40.741 19.49 19.49 45.10 3.32
33 34 7.069085 ACCTTGTTGTAGACTTGTAGTAGACAA 59.931 37.037 0.00 0.00 46.03 3.18
34 35 6.548622 ACCTTGTTGTAGACTTGTAGTAGACA 59.451 38.462 0.00 0.00 35.78 3.41
36 37 7.592885 AACCTTGTTGTAGACTTGTAGTAGA 57.407 36.000 0.00 0.00 0.00 2.59
37 38 7.709613 ACAAACCTTGTTGTAGACTTGTAGTAG 59.290 37.037 0.00 0.00 42.22 2.57
38 39 7.558604 ACAAACCTTGTTGTAGACTTGTAGTA 58.441 34.615 0.00 0.00 42.22 1.82
39 40 6.412214 ACAAACCTTGTTGTAGACTTGTAGT 58.588 36.000 0.00 0.00 42.22 2.73
40 41 6.018180 GGACAAACCTTGTTGTAGACTTGTAG 60.018 42.308 0.00 0.00 45.52 2.74
41 42 5.818857 GGACAAACCTTGTTGTAGACTTGTA 59.181 40.000 0.00 0.00 45.52 2.41
42 43 4.638865 GGACAAACCTTGTTGTAGACTTGT 59.361 41.667 0.00 0.00 45.52 3.16
44 45 3.875134 CGGACAAACCTTGTTGTAGACTT 59.125 43.478 0.00 0.00 45.52 3.01
45 46 3.463944 CGGACAAACCTTGTTGTAGACT 58.536 45.455 0.00 0.00 45.52 3.24
46 47 2.546789 CCGGACAAACCTTGTTGTAGAC 59.453 50.000 0.00 0.00 45.52 2.59
47 48 2.841215 CCGGACAAACCTTGTTGTAGA 58.159 47.619 0.00 0.00 45.52 2.59
48 49 1.265905 GCCGGACAAACCTTGTTGTAG 59.734 52.381 5.05 0.00 45.52 2.74
50 51 0.395173 AGCCGGACAAACCTTGTTGT 60.395 50.000 5.05 0.00 45.52 3.32
51 52 0.310854 GAGCCGGACAAACCTTGTTG 59.689 55.000 5.05 0.00 45.52 3.33
54 55 2.325082 CGGAGCCGGACAAACCTTG 61.325 63.158 5.05 0.00 36.31 3.61
450 451 8.378172 TGCATACTAGGCTTAATACAACAATC 57.622 34.615 0.00 0.00 0.00 2.67
451 452 8.786898 CATGCATACTAGGCTTAATACAACAAT 58.213 33.333 0.00 0.00 0.00 2.71
452 453 7.255104 GCATGCATACTAGGCTTAATACAACAA 60.255 37.037 14.21 0.00 0.00 2.83
454 455 6.428159 AGCATGCATACTAGGCTTAATACAAC 59.572 38.462 21.98 0.00 0.00 3.32
455 456 6.533730 AGCATGCATACTAGGCTTAATACAA 58.466 36.000 21.98 0.00 0.00 2.41
457 458 8.723942 ATTAGCATGCATACTAGGCTTAATAC 57.276 34.615 21.98 0.00 36.10 1.89
459 460 8.762645 TCTATTAGCATGCATACTAGGCTTAAT 58.237 33.333 21.98 12.66 36.10 1.40
460 461 8.134202 TCTATTAGCATGCATACTAGGCTTAA 57.866 34.615 21.98 5.83 36.10 1.85
464 465 6.344500 ACATCTATTAGCATGCATACTAGGC 58.656 40.000 21.98 2.40 0.00 3.93
465 466 8.470002 TGTACATCTATTAGCATGCATACTAGG 58.530 37.037 21.98 4.82 0.00 3.02
466 467 9.860898 TTGTACATCTATTAGCATGCATACTAG 57.139 33.333 21.98 15.33 0.00 2.57
468 469 9.159364 CATTGTACATCTATTAGCATGCATACT 57.841 33.333 21.98 4.51 0.00 2.12
469 470 8.393366 CCATTGTACATCTATTAGCATGCATAC 58.607 37.037 21.98 8.02 0.00 2.39
470 471 8.102676 ACCATTGTACATCTATTAGCATGCATA 58.897 33.333 21.98 8.99 0.00 3.14
472 473 6.298361 ACCATTGTACATCTATTAGCATGCA 58.702 36.000 21.98 0.00 0.00 3.96
473 474 6.808008 ACCATTGTACATCTATTAGCATGC 57.192 37.500 10.51 10.51 0.00 4.06
474 475 7.080099 GCAACCATTGTACATCTATTAGCATG 58.920 38.462 0.00 0.00 0.00 4.06
475 476 6.772233 TGCAACCATTGTACATCTATTAGCAT 59.228 34.615 0.00 0.00 0.00 3.79
476 477 6.118852 TGCAACCATTGTACATCTATTAGCA 58.881 36.000 0.00 0.00 0.00 3.49
477 478 6.618287 TGCAACCATTGTACATCTATTAGC 57.382 37.500 0.00 0.00 0.00 3.09
478 479 9.853555 TTTTTGCAACCATTGTACATCTATTAG 57.146 29.630 0.00 0.00 0.00 1.73
481 482 8.530311 TCATTTTTGCAACCATTGTACATCTAT 58.470 29.630 0.00 0.00 0.00 1.98
482 483 7.890515 TCATTTTTGCAACCATTGTACATCTA 58.109 30.769 0.00 0.00 0.00 1.98
484 485 7.118101 ACATCATTTTTGCAACCATTGTACATC 59.882 33.333 0.00 0.00 0.00 3.06
485 486 6.935771 ACATCATTTTTGCAACCATTGTACAT 59.064 30.769 0.00 0.00 0.00 2.29
486 487 6.286758 ACATCATTTTTGCAACCATTGTACA 58.713 32.000 0.00 0.00 0.00 2.90
487 488 6.783892 ACATCATTTTTGCAACCATTGTAC 57.216 33.333 0.00 0.00 0.00 2.90
488 489 9.149225 GAATACATCATTTTTGCAACCATTGTA 57.851 29.630 0.00 3.79 0.00 2.41
490 491 8.259049 AGAATACATCATTTTTGCAACCATTG 57.741 30.769 0.00 0.00 0.00 2.82
491 492 8.851541 AAGAATACATCATTTTTGCAACCATT 57.148 26.923 0.00 0.00 0.00 3.16
493 494 9.368674 CATAAGAATACATCATTTTTGCAACCA 57.631 29.630 0.00 0.00 0.00 3.67
494 495 9.585099 TCATAAGAATACATCATTTTTGCAACC 57.415 29.630 0.00 0.00 0.00 3.77
496 497 9.304731 GCTCATAAGAATACATCATTTTTGCAA 57.695 29.630 0.00 0.00 0.00 4.08
497 498 8.689061 AGCTCATAAGAATACATCATTTTTGCA 58.311 29.630 0.00 0.00 0.00 4.08
498 499 8.965172 CAGCTCATAAGAATACATCATTTTTGC 58.035 33.333 0.00 0.00 0.00 3.68
499 500 9.459640 CCAGCTCATAAGAATACATCATTTTTG 57.540 33.333 0.00 0.00 0.00 2.44
500 501 8.139989 GCCAGCTCATAAGAATACATCATTTTT 58.860 33.333 0.00 0.00 0.00 1.94
502 503 6.208204 GGCCAGCTCATAAGAATACATCATTT 59.792 38.462 0.00 0.00 0.00 2.32
503 504 5.709164 GGCCAGCTCATAAGAATACATCATT 59.291 40.000 0.00 0.00 0.00 2.57
504 505 5.251764 GGCCAGCTCATAAGAATACATCAT 58.748 41.667 0.00 0.00 0.00 2.45
505 506 4.505566 GGGCCAGCTCATAAGAATACATCA 60.506 45.833 4.39 0.00 0.00 3.07
506 507 4.006319 GGGCCAGCTCATAAGAATACATC 58.994 47.826 4.39 0.00 0.00 3.06
507 508 3.654806 AGGGCCAGCTCATAAGAATACAT 59.345 43.478 6.18 0.00 0.00 2.29
508 509 3.048600 AGGGCCAGCTCATAAGAATACA 58.951 45.455 6.18 0.00 0.00 2.29
509 510 3.558109 GGAGGGCCAGCTCATAAGAATAC 60.558 52.174 6.18 0.00 0.00 1.89
510 511 2.639839 GGAGGGCCAGCTCATAAGAATA 59.360 50.000 6.18 0.00 0.00 1.75
513 514 1.056700 GGGAGGGCCAGCTCATAAGA 61.057 60.000 6.18 0.00 35.15 2.10
514 515 1.059006 AGGGAGGGCCAGCTCATAAG 61.059 60.000 6.18 0.00 35.15 1.73
515 516 0.267658 TAGGGAGGGCCAGCTCATAA 59.732 55.000 6.18 0.00 35.15 1.90
517 518 1.461075 CTAGGGAGGGCCAGCTCAT 60.461 63.158 6.18 0.00 35.15 2.90
519 520 3.555324 GCTAGGGAGGGCCAGCTC 61.555 72.222 6.18 2.10 35.15 4.09
520 521 4.421554 TGCTAGGGAGGGCCAGCT 62.422 66.667 6.18 0.00 35.05 4.24
521 522 3.871395 CTGCTAGGGAGGGCCAGC 61.871 72.222 6.18 6.00 35.15 4.85
522 523 3.167105 CCTGCTAGGGAGGGCCAG 61.167 72.222 6.18 0.00 35.15 4.85
531 532 5.360591 CAAGTGTAGTAAATCCCTGCTAGG 58.639 45.833 0.00 0.00 34.30 3.02
532 533 5.360591 CCAAGTGTAGTAAATCCCTGCTAG 58.639 45.833 0.00 0.00 0.00 3.42
533 534 4.383770 GCCAAGTGTAGTAAATCCCTGCTA 60.384 45.833 0.00 0.00 0.00 3.49
534 535 3.622455 GCCAAGTGTAGTAAATCCCTGCT 60.622 47.826 0.00 0.00 0.00 4.24
535 536 2.683362 GCCAAGTGTAGTAAATCCCTGC 59.317 50.000 0.00 0.00 0.00 4.85
536 537 3.279434 GGCCAAGTGTAGTAAATCCCTG 58.721 50.000 0.00 0.00 0.00 4.45
537 538 2.241430 GGGCCAAGTGTAGTAAATCCCT 59.759 50.000 4.39 0.00 0.00 4.20
538 539 2.241430 AGGGCCAAGTGTAGTAAATCCC 59.759 50.000 6.18 0.00 0.00 3.85
539 540 3.542648 GAGGGCCAAGTGTAGTAAATCC 58.457 50.000 6.18 0.00 0.00 3.01
540 541 3.200165 AGGAGGGCCAAGTGTAGTAAATC 59.800 47.826 6.18 0.00 36.29 2.17
542 543 2.570302 GAGGAGGGCCAAGTGTAGTAAA 59.430 50.000 6.18 0.00 36.29 2.01
543 544 2.185387 GAGGAGGGCCAAGTGTAGTAA 58.815 52.381 6.18 0.00 36.29 2.24
544 545 1.078159 TGAGGAGGGCCAAGTGTAGTA 59.922 52.381 6.18 0.00 36.29 1.82
545 546 0.178903 TGAGGAGGGCCAAGTGTAGT 60.179 55.000 6.18 0.00 36.29 2.73
546 547 1.207791 ATGAGGAGGGCCAAGTGTAG 58.792 55.000 6.18 0.00 36.29 2.74
547 548 2.116238 GTATGAGGAGGGCCAAGTGTA 58.884 52.381 6.18 0.00 36.29 2.90
548 549 0.912486 GTATGAGGAGGGCCAAGTGT 59.088 55.000 6.18 0.00 36.29 3.55
549 550 1.207791 AGTATGAGGAGGGCCAAGTG 58.792 55.000 6.18 0.00 36.29 3.16
550 551 2.868964 TAGTATGAGGAGGGCCAAGT 57.131 50.000 6.18 0.00 36.29 3.16
551 552 5.104735 GGAATATAGTATGAGGAGGGCCAAG 60.105 48.000 6.18 0.00 36.29 3.61
552 553 4.783227 GGAATATAGTATGAGGAGGGCCAA 59.217 45.833 6.18 0.00 36.29 4.52
554 555 4.407296 CAGGAATATAGTATGAGGAGGGCC 59.593 50.000 0.00 0.00 0.00 5.80
555 556 4.407296 CCAGGAATATAGTATGAGGAGGGC 59.593 50.000 0.00 0.00 0.00 5.19
556 557 4.407296 GCCAGGAATATAGTATGAGGAGGG 59.593 50.000 0.00 0.00 0.00 4.30
557 558 5.276440 AGCCAGGAATATAGTATGAGGAGG 58.724 45.833 0.00 0.00 0.00 4.30
558 559 5.362430 GGAGCCAGGAATATAGTATGAGGAG 59.638 48.000 0.00 0.00 0.00 3.69
559 560 5.273208 GGAGCCAGGAATATAGTATGAGGA 58.727 45.833 0.00 0.00 0.00 3.71
560 561 4.098654 CGGAGCCAGGAATATAGTATGAGG 59.901 50.000 0.00 0.00 0.00 3.86
561 562 5.255710 CGGAGCCAGGAATATAGTATGAG 57.744 47.826 0.00 0.00 0.00 2.90
627 628 2.942710 AGTGACGACTACAAACATCGG 58.057 47.619 0.00 0.00 40.16 4.18
630 631 4.321750 CCACCTAGTGACGACTACAAACAT 60.322 45.833 0.00 0.00 35.23 2.71
642 643 1.207329 GTCCATGGACCACCTAGTGAC 59.793 57.143 31.37 4.82 39.08 3.67
688 689 6.908825 TCAATTATGGCAGTACAGAAAACAC 58.091 36.000 0.00 0.00 0.00 3.32
854 857 2.348685 GCGTTGTTGCGTGTATGTACAA 60.349 45.455 0.00 0.00 38.04 2.41
890 2859 2.224209 ACCGCTATTTATAGGCGTGCTT 60.224 45.455 0.00 0.00 32.20 3.91
959 2930 1.673168 GGCTGCCGAAGATGAAAGAT 58.327 50.000 1.35 0.00 0.00 2.40
1151 3136 2.574399 GCCGCTCTTCTCCGAGTT 59.426 61.111 0.00 0.00 33.55 3.01
1340 3328 1.080772 GCACTCGATCACACACGGA 60.081 57.895 0.00 0.00 0.00 4.69
1519 3510 4.674101 GCGGCTAATAATTCACACTTTGCA 60.674 41.667 0.00 0.00 0.00 4.08
1645 3662 7.832685 ACTTTCAAACCCTTTGTAGAGTAACTT 59.167 33.333 0.00 0.00 41.36 2.66
1646 3663 7.344134 ACTTTCAAACCCTTTGTAGAGTAACT 58.656 34.615 0.00 0.00 41.36 2.24
1647 3664 7.563888 ACTTTCAAACCCTTTGTAGAGTAAC 57.436 36.000 0.00 0.00 41.36 2.50
1651 3668 8.446599 TTTCTACTTTCAAACCCTTTGTAGAG 57.553 34.615 0.00 0.00 41.36 2.43
1652 3669 8.269317 TCTTTCTACTTTCAAACCCTTTGTAGA 58.731 33.333 0.00 0.00 41.36 2.59
1653 3670 8.446599 TCTTTCTACTTTCAAACCCTTTGTAG 57.553 34.615 0.00 0.00 41.36 2.74
1654 3671 8.810990 TTCTTTCTACTTTCAAACCCTTTGTA 57.189 30.769 0.00 0.00 41.36 2.41
1655 3672 7.396339 ACTTCTTTCTACTTTCAAACCCTTTGT 59.604 33.333 0.00 0.00 41.36 2.83
1656 3673 7.772166 ACTTCTTTCTACTTTCAAACCCTTTG 58.228 34.615 0.00 0.00 41.96 2.77
1660 3685 6.017026 CCAGACTTCTTTCTACTTTCAAACCC 60.017 42.308 0.00 0.00 0.00 4.11
1675 3700 3.251484 TCTTCCCATGACCAGACTTCTT 58.749 45.455 0.00 0.00 0.00 2.52
1677 3702 2.834549 TCTCTTCCCATGACCAGACTTC 59.165 50.000 0.00 0.00 0.00 3.01
1719 3746 9.614792 AATAACACAATCCTTAAGCCTACTTAG 57.385 33.333 0.00 0.00 39.51 2.18
1792 3819 6.880529 TGCATGTGATGAACCGATGATATATT 59.119 34.615 0.00 0.00 0.00 1.28
1910 3937 2.035632 CCCTTGTTGTTTGGTTGCCTA 58.964 47.619 0.00 0.00 0.00 3.93
1912 3939 0.539518 ACCCTTGTTGTTTGGTTGCC 59.460 50.000 0.00 0.00 0.00 4.52
1955 3982 1.029681 GAGTTCCCACACAAACCACC 58.970 55.000 0.00 0.00 0.00 4.61
2021 4048 9.979270 CTGAATTCTGATGTAAGTATGTCAAAC 57.021 33.333 7.05 0.00 0.00 2.93
2022 4049 8.668353 GCTGAATTCTGATGTAAGTATGTCAAA 58.332 33.333 15.79 0.00 0.00 2.69
2027 4054 5.755375 ACCGCTGAATTCTGATGTAAGTATG 59.245 40.000 15.79 0.00 0.00 2.39
2048 4076 4.503296 CCCTTATCTAATGTCTCCCAACCG 60.503 50.000 0.00 0.00 0.00 4.44
2071 4099 4.904116 TGGATCACGCGAATCAAATAAAC 58.096 39.130 15.93 1.69 0.00 2.01
2073 4101 6.704050 TCTTATGGATCACGCGAATCAAATAA 59.296 34.615 15.93 18.59 0.00 1.40
2083 4111 3.555547 TGATTTGTCTTATGGATCACGCG 59.444 43.478 3.53 3.53 0.00 6.01
2123 4151 3.423749 TCAAGTGGACATGACAATGCAT 58.576 40.909 0.00 0.00 37.29 3.96
2125 4153 3.921119 TTCAAGTGGACATGACAATGC 57.079 42.857 0.00 0.00 37.29 3.56
2150 4178 3.009033 TCTTGGTGGGAATTCAATCTCGT 59.991 43.478 7.93 0.00 0.00 4.18
2151 4179 3.609853 TCTTGGTGGGAATTCAATCTCG 58.390 45.455 7.93 0.00 0.00 4.04
2154 4182 4.872124 GCAAATCTTGGTGGGAATTCAATC 59.128 41.667 7.93 0.00 0.00 2.67
2156 4184 3.007831 GGCAAATCTTGGTGGGAATTCAA 59.992 43.478 7.93 0.00 0.00 2.69
2158 4186 2.833943 AGGCAAATCTTGGTGGGAATTC 59.166 45.455 0.00 0.00 0.00 2.17
2168 4196 5.745294 CCACGATGAAATTAGGCAAATCTTG 59.255 40.000 0.00 0.00 0.00 3.02
2172 4200 5.913137 TTCCACGATGAAATTAGGCAAAT 57.087 34.783 0.00 0.00 0.00 2.32
2173 4201 5.713792 TTTCCACGATGAAATTAGGCAAA 57.286 34.783 0.00 0.00 29.56 3.68
2174 4202 5.713792 TTTTCCACGATGAAATTAGGCAA 57.286 34.783 0.00 0.00 34.41 4.52
2175 4203 5.713792 TTTTTCCACGATGAAATTAGGCA 57.286 34.783 0.00 0.00 34.41 4.75
2243 4271 2.233271 CTCCATGTTCCTTTGCACTGT 58.767 47.619 0.00 0.00 0.00 3.55
2259 4287 7.737869 TGTTTGGTTTGTAGAACTATACTCCA 58.262 34.615 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.