Multiple sequence alignment - TraesCS1D01G225800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G225800 chr1D 100.000 2548 0 0 1 2548 314333366 314335913 0.000000e+00 4706
1 TraesCS1D01G225800 chr1D 97.665 257 6 0 1 257 421848464 421848208 2.330000e-120 442
2 TraesCS1D01G225800 chr1D 90.860 186 17 0 1276 1461 314334581 314334766 1.510000e-62 250
3 TraesCS1D01G225800 chr1D 90.860 186 17 0 1216 1401 314334641 314334826 1.510000e-62 250
4 TraesCS1D01G225800 chr1D 91.447 152 13 0 1396 1547 314419184 314419335 2.570000e-50 209
5 TraesCS1D01G225800 chr1D 91.447 152 13 0 1396 1547 314426569 314426720 2.570000e-50 209
6 TraesCS1D01G225800 chr1D 75.348 503 65 36 813 1281 314418772 314419249 1.200000e-43 187
7 TraesCS1D01G225800 chr1D 77.961 304 42 17 1001 1281 314196263 314196564 1.570000e-37 167
8 TraesCS1D01G225800 chr1B 90.596 1425 60 25 354 1765 424523390 424524753 0.000000e+00 1821
9 TraesCS1D01G225800 chr1B 92.278 790 31 10 1778 2548 424528139 424528917 0.000000e+00 1094
10 TraesCS1D01G225800 chr1B 94.624 186 10 0 1276 1461 424524211 424524396 3.210000e-74 289
11 TraesCS1D01G225800 chr1B 93.011 186 13 0 1216 1401 424524271 424524456 3.230000e-69 272
12 TraesCS1D01G225800 chr1B 91.447 152 13 0 1396 1547 424414519 424414670 2.570000e-50 209
13 TraesCS1D01G225800 chr1B 95.556 90 4 0 1192 1281 424414495 424414584 7.350000e-31 145
14 TraesCS1D01G225800 chr1A 92.688 889 46 8 455 1341 394477322 394478193 0.000000e+00 1264
15 TraesCS1D01G225800 chr1A 94.305 597 21 8 1336 1926 394478068 394478657 0.000000e+00 902
16 TraesCS1D01G225800 chr1A 94.364 550 18 8 1383 1926 394563859 394564401 0.000000e+00 832
17 TraesCS1D01G225800 chr1A 81.720 372 36 14 2193 2548 394479042 394479397 5.370000e-72 281
18 TraesCS1D01G225800 chr1A 81.720 372 36 14 2193 2548 394564786 394565141 5.370000e-72 281
19 TraesCS1D01G225800 chr1A 81.818 308 36 15 985 1281 394482125 394482423 9.110000e-60 241
20 TraesCS1D01G225800 chr1A 81.818 308 36 15 985 1281 394566798 394567096 9.110000e-60 241
21 TraesCS1D01G225800 chr1A 92.763 152 11 0 1396 1547 394588132 394588283 1.190000e-53 220
22 TraesCS1D01G225800 chr1A 94.444 126 7 0 1276 1401 394478068 394478193 7.190000e-46 195
23 TraesCS1D01G225800 chr1A 88.406 138 8 4 325 457 394542334 394542468 2.620000e-35 159
24 TraesCS1D01G225800 chr1A 86.957 138 10 4 325 457 394453515 394453649 5.680000e-32 148
25 TraesCS1D01G225800 chrUn 94.364 550 18 8 1383 1926 370292517 370291975 0.000000e+00 832
26 TraesCS1D01G225800 chrUn 94.364 550 18 8 1383 1926 371634525 371633983 0.000000e+00 832
27 TraesCS1D01G225800 chrUn 81.720 372 36 14 2193 2548 370291590 370291235 5.370000e-72 281
28 TraesCS1D01G225800 chrUn 81.720 372 36 14 2193 2548 371633598 371633243 5.370000e-72 281
29 TraesCS1D01G225800 chrUn 93.671 79 5 0 1323 1401 370292517 370292439 4.450000e-23 119
30 TraesCS1D01G225800 chrUn 93.671 79 5 0 1323 1401 371634525 371634447 4.450000e-23 119
31 TraesCS1D01G225800 chr2D 99.216 255 2 0 1 255 598861380 598861634 6.420000e-126 460
32 TraesCS1D01G225800 chr4D 98.444 257 3 1 1 256 365050576 365050832 3.870000e-123 451
33 TraesCS1D01G225800 chr7D 97.701 261 6 0 1 261 214903620 214903360 1.390000e-122 449
34 TraesCS1D01G225800 chr7D 97.665 257 6 0 1 257 546238035 546238291 2.330000e-120 442
35 TraesCS1D01G225800 chr6D 97.692 260 5 1 1 260 83000734 83000992 1.800000e-121 446
36 TraesCS1D01G225800 chr6D 97.255 255 7 0 1 255 159351309 159351055 1.400000e-117 433
37 TraesCS1D01G225800 chr3D 98.039 255 5 0 1 255 365793417 365793163 6.470000e-121 444
38 TraesCS1D01G225800 chr2A 97.255 255 7 0 1 255 174013815 174013561 1.400000e-117 433


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G225800 chr1D 314333366 314335913 2547 False 1735.333333 4706 93.906667 1 2548 3 chr1D.!!$F3 2547
1 TraesCS1D01G225800 chr1B 424523390 424528917 5527 False 869.000000 1821 92.627250 354 2548 4 chr1B.!!$F2 2194
2 TraesCS1D01G225800 chr1A 394477322 394482423 5101 False 576.600000 1264 88.995000 455 2548 5 chr1A.!!$F4 2093
3 TraesCS1D01G225800 chr1A 394563859 394567096 3237 False 451.333333 832 85.967333 985 2548 3 chr1A.!!$F5 1563
4 TraesCS1D01G225800 chrUn 370291235 370292517 1282 True 410.666667 832 89.918333 1323 2548 3 chrUn.!!$R1 1225
5 TraesCS1D01G225800 chrUn 371633243 371634525 1282 True 410.666667 832 89.918333 1323 2548 3 chrUn.!!$R2 1225

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.024619 GTCTTAACATTCGCCGACGC 59.975 55.0 0.0 0.0 39.84 5.19 F
236 237 0.107606 TACAAGGCACCACAACGTGT 60.108 50.0 0.0 0.0 36.08 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1255 1264 0.036952 CTTGTGACCCATCTCGCTGT 60.037 55.0 0.0 0.0 0.0 4.40 R
1963 5349 0.179020 TGGGAAGCAACACCAGACTG 60.179 55.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.996363 GGACATTTTCACCAAAGGATTGC 59.004 43.478 0.00 0.00 35.10 3.56
23 24 3.996363 GACATTTTCACCAAAGGATTGCC 59.004 43.478 0.00 0.00 35.10 4.52
24 25 3.390639 ACATTTTCACCAAAGGATTGCCA 59.609 39.130 0.00 0.00 35.10 4.92
25 26 4.041938 ACATTTTCACCAAAGGATTGCCAT 59.958 37.500 0.00 0.00 35.10 4.40
26 27 3.959535 TTTCACCAAAGGATTGCCATC 57.040 42.857 0.00 0.00 35.10 3.51
27 28 2.905415 TCACCAAAGGATTGCCATCT 57.095 45.000 0.00 0.00 35.10 2.90
28 29 2.726821 TCACCAAAGGATTGCCATCTC 58.273 47.619 0.00 0.00 35.10 2.75
29 30 1.753073 CACCAAAGGATTGCCATCTCC 59.247 52.381 0.00 0.00 35.10 3.71
30 31 1.642762 ACCAAAGGATTGCCATCTCCT 59.357 47.619 0.00 0.00 43.86 3.69
31 32 2.305009 CCAAAGGATTGCCATCTCCTC 58.695 52.381 0.00 0.00 41.09 3.71
32 33 2.091994 CCAAAGGATTGCCATCTCCTCT 60.092 50.000 0.00 0.00 41.09 3.69
33 34 3.212685 CAAAGGATTGCCATCTCCTCTC 58.787 50.000 0.00 0.00 41.09 3.20
34 35 2.493099 AGGATTGCCATCTCCTCTCT 57.507 50.000 0.00 0.00 37.30 3.10
35 36 2.774173 AGGATTGCCATCTCCTCTCTT 58.226 47.619 0.00 0.00 37.30 2.85
36 37 3.121688 AGGATTGCCATCTCCTCTCTTT 58.878 45.455 0.00 0.00 37.30 2.52
37 38 3.526841 AGGATTGCCATCTCCTCTCTTTT 59.473 43.478 0.00 0.00 37.30 2.27
38 39 4.017683 AGGATTGCCATCTCCTCTCTTTTT 60.018 41.667 0.00 0.00 37.30 1.94
39 40 4.097589 GGATTGCCATCTCCTCTCTTTTTG 59.902 45.833 0.00 0.00 0.00 2.44
40 41 3.077484 TGCCATCTCCTCTCTTTTTGG 57.923 47.619 0.00 0.00 0.00 3.28
41 42 2.644299 TGCCATCTCCTCTCTTTTTGGA 59.356 45.455 0.00 0.00 0.00 3.53
42 43 3.267812 TGCCATCTCCTCTCTTTTTGGAT 59.732 43.478 0.00 0.00 0.00 3.41
43 44 4.264083 TGCCATCTCCTCTCTTTTTGGATT 60.264 41.667 0.00 0.00 0.00 3.01
44 45 4.708909 GCCATCTCCTCTCTTTTTGGATTT 59.291 41.667 0.00 0.00 0.00 2.17
45 46 5.186603 GCCATCTCCTCTCTTTTTGGATTTT 59.813 40.000 0.00 0.00 0.00 1.82
46 47 6.626844 GCCATCTCCTCTCTTTTTGGATTTTC 60.627 42.308 0.00 0.00 0.00 2.29
47 48 6.404074 CCATCTCCTCTCTTTTTGGATTTTCG 60.404 42.308 0.00 0.00 0.00 3.46
48 49 5.003804 TCTCCTCTCTTTTTGGATTTTCGG 58.996 41.667 0.00 0.00 0.00 4.30
49 50 4.079253 TCCTCTCTTTTTGGATTTTCGGG 58.921 43.478 0.00 0.00 0.00 5.14
50 51 4.079253 CCTCTCTTTTTGGATTTTCGGGA 58.921 43.478 0.00 0.00 0.00 5.14
51 52 4.082733 CCTCTCTTTTTGGATTTTCGGGAC 60.083 45.833 0.00 0.00 0.00 4.46
52 53 4.465886 TCTCTTTTTGGATTTTCGGGACA 58.534 39.130 0.00 0.00 0.00 4.02
53 54 4.518970 TCTCTTTTTGGATTTTCGGGACAG 59.481 41.667 0.00 0.00 0.00 3.51
54 55 4.211920 TCTTTTTGGATTTTCGGGACAGT 58.788 39.130 0.00 0.00 0.00 3.55
55 56 4.277423 TCTTTTTGGATTTTCGGGACAGTC 59.723 41.667 0.00 0.00 0.00 3.51
56 57 3.502123 TTTGGATTTTCGGGACAGTCT 57.498 42.857 0.00 0.00 0.00 3.24
57 58 3.502123 TTGGATTTTCGGGACAGTCTT 57.498 42.857 0.00 0.00 0.00 3.01
58 59 4.627284 TTGGATTTTCGGGACAGTCTTA 57.373 40.909 0.00 0.00 0.00 2.10
59 60 4.627284 TGGATTTTCGGGACAGTCTTAA 57.373 40.909 0.00 0.00 0.00 1.85
60 61 4.320870 TGGATTTTCGGGACAGTCTTAAC 58.679 43.478 0.00 0.00 0.00 2.01
61 62 4.202377 TGGATTTTCGGGACAGTCTTAACA 60.202 41.667 0.00 0.00 0.00 2.41
62 63 4.941873 GGATTTTCGGGACAGTCTTAACAT 59.058 41.667 0.00 0.00 0.00 2.71
63 64 5.414765 GGATTTTCGGGACAGTCTTAACATT 59.585 40.000 0.00 0.00 0.00 2.71
64 65 5.934935 TTTTCGGGACAGTCTTAACATTC 57.065 39.130 0.00 0.00 0.00 2.67
65 66 3.226346 TCGGGACAGTCTTAACATTCG 57.774 47.619 0.00 0.00 0.00 3.34
66 67 1.659098 CGGGACAGTCTTAACATTCGC 59.341 52.381 0.00 0.00 0.00 4.70
67 68 2.007608 GGGACAGTCTTAACATTCGCC 58.992 52.381 0.00 0.00 0.00 5.54
68 69 1.659098 GGACAGTCTTAACATTCGCCG 59.341 52.381 0.00 0.00 0.00 6.46
69 70 2.602878 GACAGTCTTAACATTCGCCGA 58.397 47.619 0.00 0.00 0.00 5.54
70 71 2.334838 ACAGTCTTAACATTCGCCGAC 58.665 47.619 0.00 0.00 0.00 4.79
71 72 1.320555 CAGTCTTAACATTCGCCGACG 59.679 52.381 0.00 0.00 42.01 5.12
72 73 0.024619 GTCTTAACATTCGCCGACGC 59.975 55.000 0.00 0.00 39.84 5.19
73 74 1.079875 TCTTAACATTCGCCGACGCC 61.080 55.000 0.00 0.00 39.84 5.68
74 75 2.032185 CTTAACATTCGCCGACGCCC 62.032 60.000 0.00 0.00 39.84 6.13
79 80 3.646023 ATTCGCCGACGCCCGTTTA 62.646 57.895 0.00 0.00 39.84 2.01
83 84 3.174573 CCGACGCCCGTTTACGAC 61.175 66.667 3.46 0.00 43.02 4.34
84 85 2.126734 CGACGCCCGTTTACGACT 60.127 61.111 3.46 0.00 43.02 4.18
85 86 2.430942 CGACGCCCGTTTACGACTG 61.431 63.158 3.46 0.00 43.02 3.51
86 87 1.081242 GACGCCCGTTTACGACTGA 60.081 57.895 3.46 0.00 43.02 3.41
87 88 1.069378 GACGCCCGTTTACGACTGAG 61.069 60.000 3.46 0.00 43.02 3.35
88 89 1.804326 CGCCCGTTTACGACTGAGG 60.804 63.158 3.46 0.00 43.02 3.86
89 90 1.447314 GCCCGTTTACGACTGAGGG 60.447 63.158 3.46 0.00 43.02 4.30
90 91 1.880819 GCCCGTTTACGACTGAGGGA 61.881 60.000 12.66 0.00 41.26 4.20
91 92 0.172803 CCCGTTTACGACTGAGGGAG 59.827 60.000 3.46 0.00 41.26 4.30
92 93 0.172803 CCGTTTACGACTGAGGGAGG 59.827 60.000 3.46 0.00 43.02 4.30
93 94 0.172803 CGTTTACGACTGAGGGAGGG 59.827 60.000 0.00 0.00 43.02 4.30
94 95 1.264295 GTTTACGACTGAGGGAGGGT 58.736 55.000 0.00 0.00 0.00 4.34
95 96 1.067071 GTTTACGACTGAGGGAGGGTG 60.067 57.143 0.00 0.00 0.00 4.61
96 97 0.113776 TTACGACTGAGGGAGGGTGT 59.886 55.000 0.00 0.00 0.00 4.16
97 98 0.113776 TACGACTGAGGGAGGGTGTT 59.886 55.000 0.00 0.00 0.00 3.32
98 99 0.113776 ACGACTGAGGGAGGGTGTTA 59.886 55.000 0.00 0.00 0.00 2.41
99 100 0.818296 CGACTGAGGGAGGGTGTTAG 59.182 60.000 0.00 0.00 0.00 2.34
100 101 1.616187 CGACTGAGGGAGGGTGTTAGA 60.616 57.143 0.00 0.00 0.00 2.10
101 102 2.537143 GACTGAGGGAGGGTGTTAGAA 58.463 52.381 0.00 0.00 0.00 2.10
102 103 3.108376 GACTGAGGGAGGGTGTTAGAAT 58.892 50.000 0.00 0.00 0.00 2.40
103 104 4.287552 GACTGAGGGAGGGTGTTAGAATA 58.712 47.826 0.00 0.00 0.00 1.75
104 105 4.897051 ACTGAGGGAGGGTGTTAGAATAT 58.103 43.478 0.00 0.00 0.00 1.28
105 106 6.039415 ACTGAGGGAGGGTGTTAGAATATA 57.961 41.667 0.00 0.00 0.00 0.86
106 107 6.635021 ACTGAGGGAGGGTGTTAGAATATAT 58.365 40.000 0.00 0.00 0.00 0.86
107 108 7.776745 ACTGAGGGAGGGTGTTAGAATATATA 58.223 38.462 0.00 0.00 0.00 0.86
108 109 8.239478 ACTGAGGGAGGGTGTTAGAATATATAA 58.761 37.037 0.00 0.00 0.00 0.98
109 110 8.431910 TGAGGGAGGGTGTTAGAATATATAAC 57.568 38.462 4.52 4.52 34.40 1.89
110 111 7.456902 TGAGGGAGGGTGTTAGAATATATAACC 59.543 40.741 7.80 0.00 33.13 2.85
111 112 6.439692 AGGGAGGGTGTTAGAATATATAACCG 59.560 42.308 7.80 0.00 33.13 4.44
112 113 6.212187 GGGAGGGTGTTAGAATATATAACCGT 59.788 42.308 7.80 0.00 33.13 4.83
113 114 7.397192 GGGAGGGTGTTAGAATATATAACCGTA 59.603 40.741 7.80 0.00 33.13 4.02
114 115 8.975295 GGAGGGTGTTAGAATATATAACCGTAT 58.025 37.037 7.80 0.00 33.13 3.06
117 118 9.933723 GGGTGTTAGAATATATAACCGTATTGT 57.066 33.333 7.80 0.00 33.13 2.71
152 153 8.571336 AGTTATACGGTTGTATATGTGTAGTCC 58.429 37.037 0.00 0.00 41.83 3.85
153 154 8.571336 GTTATACGGTTGTATATGTGTAGTCCT 58.429 37.037 0.00 0.00 41.83 3.85
154 155 5.927281 ACGGTTGTATATGTGTAGTCCTT 57.073 39.130 0.00 0.00 0.00 3.36
155 156 5.657474 ACGGTTGTATATGTGTAGTCCTTG 58.343 41.667 0.00 0.00 0.00 3.61
156 157 5.186409 ACGGTTGTATATGTGTAGTCCTTGT 59.814 40.000 0.00 0.00 0.00 3.16
157 158 6.377996 ACGGTTGTATATGTGTAGTCCTTGTA 59.622 38.462 0.00 0.00 0.00 2.41
158 159 7.069085 ACGGTTGTATATGTGTAGTCCTTGTAT 59.931 37.037 0.00 0.00 0.00 2.29
159 160 8.570488 CGGTTGTATATGTGTAGTCCTTGTATA 58.430 37.037 0.00 0.00 0.00 1.47
160 161 9.909644 GGTTGTATATGTGTAGTCCTTGTATAG 57.090 37.037 0.00 0.00 0.00 1.31
161 162 9.909644 GTTGTATATGTGTAGTCCTTGTATAGG 57.090 37.037 0.00 0.00 46.27 2.57
162 163 9.650714 TTGTATATGTGTAGTCCTTGTATAGGT 57.349 33.333 0.00 0.00 45.03 3.08
163 164 9.074576 TGTATATGTGTAGTCCTTGTATAGGTG 57.925 37.037 0.00 0.00 45.03 4.00
164 165 9.075678 GTATATGTGTAGTCCTTGTATAGGTGT 57.924 37.037 0.00 0.00 45.03 4.16
165 166 5.909621 TGTGTAGTCCTTGTATAGGTGTC 57.090 43.478 0.00 0.00 45.03 3.67
166 167 4.708421 TGTGTAGTCCTTGTATAGGTGTCC 59.292 45.833 0.00 0.00 45.03 4.02
167 168 3.949754 TGTAGTCCTTGTATAGGTGTCCG 59.050 47.826 0.00 0.00 45.03 4.79
168 169 3.097342 AGTCCTTGTATAGGTGTCCGT 57.903 47.619 0.00 0.00 45.03 4.69
169 170 4.240881 AGTCCTTGTATAGGTGTCCGTA 57.759 45.455 0.00 0.00 45.03 4.02
170 171 4.801164 AGTCCTTGTATAGGTGTCCGTAT 58.199 43.478 0.00 0.00 45.03 3.06
171 172 5.945310 AGTCCTTGTATAGGTGTCCGTATA 58.055 41.667 0.00 0.00 45.03 1.47
172 173 6.550163 AGTCCTTGTATAGGTGTCCGTATAT 58.450 40.000 0.00 0.00 45.03 0.86
173 174 7.008941 AGTCCTTGTATAGGTGTCCGTATATT 58.991 38.462 0.00 0.00 45.03 1.28
174 175 7.039923 AGTCCTTGTATAGGTGTCCGTATATTG 60.040 40.741 0.00 0.00 45.03 1.90
175 176 6.779049 TCCTTGTATAGGTGTCCGTATATTGT 59.221 38.462 0.00 0.00 45.03 2.71
176 177 7.944000 TCCTTGTATAGGTGTCCGTATATTGTA 59.056 37.037 0.00 0.00 45.03 2.41
177 178 8.025445 CCTTGTATAGGTGTCCGTATATTGTAC 58.975 40.741 0.00 0.00 39.39 2.90
178 179 7.132694 TGTATAGGTGTCCGTATATTGTACG 57.867 40.000 6.04 6.04 40.30 3.67
179 180 6.934083 TGTATAGGTGTCCGTATATTGTACGA 59.066 38.462 13.70 0.00 42.94 3.43
180 181 7.607607 TGTATAGGTGTCCGTATATTGTACGAT 59.392 37.037 13.70 0.23 42.94 3.73
181 182 9.098355 GTATAGGTGTCCGTATATTGTACGATA 57.902 37.037 13.70 5.26 42.94 2.92
182 183 6.246420 AGGTGTCCGTATATTGTACGATAC 57.754 41.667 13.70 11.38 42.94 2.24
183 184 5.082059 GGTGTCCGTATATTGTACGATACG 58.918 45.833 19.82 19.82 46.64 3.06
191 192 7.476378 GTATATTGTACGATACGAACTCTGC 57.524 40.000 4.88 0.00 0.00 4.26
192 193 2.838386 TGTACGATACGAACTCTGCC 57.162 50.000 0.00 0.00 0.00 4.85
193 194 2.362736 TGTACGATACGAACTCTGCCT 58.637 47.619 0.00 0.00 0.00 4.75
194 195 2.751259 TGTACGATACGAACTCTGCCTT 59.249 45.455 0.00 0.00 0.00 4.35
195 196 2.279582 ACGATACGAACTCTGCCTTG 57.720 50.000 0.00 0.00 0.00 3.61
196 197 1.544691 ACGATACGAACTCTGCCTTGT 59.455 47.619 0.00 0.00 0.00 3.16
197 198 2.751259 ACGATACGAACTCTGCCTTGTA 59.249 45.455 0.00 0.00 0.00 2.41
198 199 3.192001 ACGATACGAACTCTGCCTTGTAA 59.808 43.478 0.00 0.00 0.00 2.41
199 200 4.142227 ACGATACGAACTCTGCCTTGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
200 201 4.441415 CGATACGAACTCTGCCTTGTAATC 59.559 45.833 0.00 0.00 0.00 1.75
201 202 3.963428 ACGAACTCTGCCTTGTAATCT 57.037 42.857 0.00 0.00 0.00 2.40
202 203 6.512903 CGATACGAACTCTGCCTTGTAATCTA 60.513 42.308 0.00 0.00 0.00 1.98
203 204 5.599999 ACGAACTCTGCCTTGTAATCTAT 57.400 39.130 0.00 0.00 0.00 1.98
204 205 6.710597 ACGAACTCTGCCTTGTAATCTATA 57.289 37.500 0.00 0.00 0.00 1.31
205 206 7.291411 ACGAACTCTGCCTTGTAATCTATAT 57.709 36.000 0.00 0.00 0.00 0.86
206 207 8.405418 ACGAACTCTGCCTTGTAATCTATATA 57.595 34.615 0.00 0.00 0.00 0.86
207 208 9.026121 ACGAACTCTGCCTTGTAATCTATATAT 57.974 33.333 0.00 0.00 0.00 0.86
229 230 4.989279 ATTGATCAATACAAGGCACCAC 57.011 40.909 19.42 0.00 0.00 4.16
230 231 3.431673 TGATCAATACAAGGCACCACA 57.568 42.857 0.00 0.00 0.00 4.17
231 232 3.760738 TGATCAATACAAGGCACCACAA 58.239 40.909 0.00 0.00 0.00 3.33
232 233 3.505680 TGATCAATACAAGGCACCACAAC 59.494 43.478 0.00 0.00 0.00 3.32
233 234 1.876799 TCAATACAAGGCACCACAACG 59.123 47.619 0.00 0.00 0.00 4.10
234 235 1.606668 CAATACAAGGCACCACAACGT 59.393 47.619 0.00 0.00 0.00 3.99
235 236 1.234821 ATACAAGGCACCACAACGTG 58.765 50.000 0.00 0.00 36.80 4.49
236 237 0.107606 TACAAGGCACCACAACGTGT 60.108 50.000 0.00 0.00 36.08 4.49
245 246 2.788515 CACAACGTGTGGTTTCCCT 58.211 52.632 9.43 0.00 44.27 4.20
246 247 1.956297 CACAACGTGTGGTTTCCCTA 58.044 50.000 9.43 0.00 44.27 3.53
247 248 2.290464 CACAACGTGTGGTTTCCCTAA 58.710 47.619 9.43 0.00 44.27 2.69
248 249 2.882137 CACAACGTGTGGTTTCCCTAAT 59.118 45.455 9.43 0.00 44.27 1.73
249 250 3.058501 CACAACGTGTGGTTTCCCTAATC 60.059 47.826 9.43 0.00 44.27 1.75
250 251 3.181448 ACAACGTGTGGTTTCCCTAATCT 60.181 43.478 0.00 0.00 36.49 2.40
251 252 3.782656 ACGTGTGGTTTCCCTAATCTT 57.217 42.857 0.00 0.00 0.00 2.40
252 253 4.895668 ACGTGTGGTTTCCCTAATCTTA 57.104 40.909 0.00 0.00 0.00 2.10
253 254 4.572909 ACGTGTGGTTTCCCTAATCTTAC 58.427 43.478 0.00 0.00 0.00 2.34
254 255 4.040706 ACGTGTGGTTTCCCTAATCTTACA 59.959 41.667 0.00 0.00 0.00 2.41
255 256 4.630069 CGTGTGGTTTCCCTAATCTTACAG 59.370 45.833 0.00 0.00 0.00 2.74
256 257 5.557866 GTGTGGTTTCCCTAATCTTACAGT 58.442 41.667 0.00 0.00 0.00 3.55
257 258 5.411669 GTGTGGTTTCCCTAATCTTACAGTG 59.588 44.000 0.00 0.00 0.00 3.66
258 259 5.308497 TGTGGTTTCCCTAATCTTACAGTGA 59.692 40.000 0.00 0.00 0.00 3.41
259 260 5.875359 GTGGTTTCCCTAATCTTACAGTGAG 59.125 44.000 0.00 0.00 0.00 3.51
260 261 5.546499 TGGTTTCCCTAATCTTACAGTGAGT 59.454 40.000 0.00 0.00 0.00 3.41
261 262 6.043938 TGGTTTCCCTAATCTTACAGTGAGTT 59.956 38.462 0.00 0.00 0.00 3.01
262 263 6.940867 GGTTTCCCTAATCTTACAGTGAGTTT 59.059 38.462 0.00 0.00 0.00 2.66
263 264 7.447545 GGTTTCCCTAATCTTACAGTGAGTTTT 59.552 37.037 0.00 0.00 0.00 2.43
264 265 9.498176 GTTTCCCTAATCTTACAGTGAGTTTTA 57.502 33.333 0.00 0.00 0.00 1.52
300 301 5.930837 TCACATCATTTATTTTGACCCCC 57.069 39.130 0.00 0.00 0.00 5.40
301 302 5.336945 TCACATCATTTATTTTGACCCCCA 58.663 37.500 0.00 0.00 0.00 4.96
302 303 5.186797 TCACATCATTTATTTTGACCCCCAC 59.813 40.000 0.00 0.00 0.00 4.61
303 304 5.046735 CACATCATTTATTTTGACCCCCACA 60.047 40.000 0.00 0.00 0.00 4.17
304 305 5.725822 ACATCATTTATTTTGACCCCCACAT 59.274 36.000 0.00 0.00 0.00 3.21
305 306 5.674052 TCATTTATTTTGACCCCCACATG 57.326 39.130 0.00 0.00 0.00 3.21
306 307 3.971245 TTTATTTTGACCCCCACATGC 57.029 42.857 0.00 0.00 0.00 4.06
307 308 1.859302 TATTTTGACCCCCACATGCC 58.141 50.000 0.00 0.00 0.00 4.40
308 309 0.909133 ATTTTGACCCCCACATGCCC 60.909 55.000 0.00 0.00 0.00 5.36
309 310 2.029892 TTTTGACCCCCACATGCCCT 62.030 55.000 0.00 0.00 0.00 5.19
310 311 2.439553 TTTGACCCCCACATGCCCTC 62.440 60.000 0.00 0.00 0.00 4.30
311 312 3.017581 GACCCCCACATGCCCTCT 61.018 66.667 0.00 0.00 0.00 3.69
312 313 3.017581 ACCCCCACATGCCCTCTC 61.018 66.667 0.00 0.00 0.00 3.20
313 314 3.813724 CCCCCACATGCCCTCTCC 61.814 72.222 0.00 0.00 0.00 3.71
314 315 2.693864 CCCCACATGCCCTCTCCT 60.694 66.667 0.00 0.00 0.00 3.69
315 316 2.750657 CCCCACATGCCCTCTCCTC 61.751 68.421 0.00 0.00 0.00 3.71
316 317 1.997311 CCCACATGCCCTCTCCTCA 60.997 63.158 0.00 0.00 0.00 3.86
317 318 1.351080 CCCACATGCCCTCTCCTCAT 61.351 60.000 0.00 0.00 0.00 2.90
318 319 1.427809 CCACATGCCCTCTCCTCATA 58.572 55.000 0.00 0.00 0.00 2.15
319 320 1.347050 CCACATGCCCTCTCCTCATAG 59.653 57.143 0.00 0.00 0.00 2.23
320 321 2.045524 CACATGCCCTCTCCTCATAGT 58.954 52.381 0.00 0.00 0.00 2.12
321 322 2.045524 ACATGCCCTCTCCTCATAGTG 58.954 52.381 0.00 0.00 0.00 2.74
322 323 1.055040 ATGCCCTCTCCTCATAGTGC 58.945 55.000 0.00 0.00 0.00 4.40
323 324 1.365633 GCCCTCTCCTCATAGTGCG 59.634 63.158 0.00 0.00 0.00 5.34
324 325 1.365633 CCCTCTCCTCATAGTGCGC 59.634 63.158 0.00 0.00 0.00 6.09
325 326 1.395045 CCCTCTCCTCATAGTGCGCA 61.395 60.000 5.66 5.66 0.00 6.09
326 327 0.461548 CCTCTCCTCATAGTGCGCAA 59.538 55.000 14.00 0.00 0.00 4.85
327 328 1.134699 CCTCTCCTCATAGTGCGCAAA 60.135 52.381 14.00 3.21 0.00 3.68
328 329 2.200067 CTCTCCTCATAGTGCGCAAAG 58.800 52.381 14.00 4.78 0.00 2.77
329 330 1.550524 TCTCCTCATAGTGCGCAAAGT 59.449 47.619 14.00 1.75 0.00 2.66
330 331 2.758423 TCTCCTCATAGTGCGCAAAGTA 59.242 45.455 14.00 4.50 0.00 2.24
331 332 3.119291 CTCCTCATAGTGCGCAAAGTAG 58.881 50.000 14.00 6.35 0.00 2.57
332 333 1.594862 CCTCATAGTGCGCAAAGTAGC 59.405 52.381 14.00 0.00 0.00 3.58
333 334 2.544685 CTCATAGTGCGCAAAGTAGCT 58.455 47.619 14.00 6.40 0.00 3.32
334 335 3.490933 CCTCATAGTGCGCAAAGTAGCTA 60.491 47.826 14.00 8.86 0.00 3.32
335 336 3.706698 TCATAGTGCGCAAAGTAGCTAG 58.293 45.455 14.00 2.97 0.00 3.42
336 337 1.922570 TAGTGCGCAAAGTAGCTAGC 58.077 50.000 14.00 6.62 0.00 3.42
337 338 0.247736 AGTGCGCAAAGTAGCTAGCT 59.752 50.000 23.12 23.12 0.00 3.32
338 339 0.371645 GTGCGCAAAGTAGCTAGCTG 59.628 55.000 27.68 11.99 0.00 4.24
339 340 0.740868 TGCGCAAAGTAGCTAGCTGG 60.741 55.000 27.68 11.89 0.00 4.85
340 341 1.432270 GCGCAAAGTAGCTAGCTGGG 61.432 60.000 27.68 18.83 0.00 4.45
341 342 1.432270 CGCAAAGTAGCTAGCTGGGC 61.432 60.000 27.68 19.56 0.00 5.36
342 343 1.432270 GCAAAGTAGCTAGCTGGGCG 61.432 60.000 27.68 12.35 34.52 6.13
343 344 1.153349 AAAGTAGCTAGCTGGGCGC 60.153 57.895 27.68 11.48 39.57 6.53
344 345 1.899437 AAAGTAGCTAGCTGGGCGCA 61.899 55.000 27.68 2.47 42.61 6.09
345 346 2.279784 GTAGCTAGCTGGGCGCAG 60.280 66.667 27.68 25.42 42.61 5.18
364 365 2.027625 CGGAGAACGCCTCGCTTTT 61.028 57.895 0.18 0.00 42.89 2.27
410 411 2.972505 AACACAGGCGTCCAAGCG 60.973 61.111 0.00 0.00 38.18 4.68
416 417 1.019278 CAGGCGTCCAAGCGTTGTAT 61.019 55.000 0.00 0.00 38.18 2.29
417 418 0.533491 AGGCGTCCAAGCGTTGTATA 59.467 50.000 0.00 0.00 38.18 1.47
418 419 0.648958 GGCGTCCAAGCGTTGTATAC 59.351 55.000 0.00 0.00 38.18 1.47
437 438 1.816679 GCCCATACCGGACGTTTCC 60.817 63.158 9.46 0.00 38.77 3.13
438 439 1.902556 CCCATACCGGACGTTTCCT 59.097 57.895 9.46 0.00 40.23 3.36
439 440 0.179092 CCCATACCGGACGTTTCCTC 60.179 60.000 9.46 0.00 40.23 3.71
441 442 0.526954 CATACCGGACGTTTCCTCGG 60.527 60.000 9.46 11.58 46.95 4.63
442 443 0.680921 ATACCGGACGTTTCCTCGGA 60.681 55.000 9.46 6.23 44.69 4.55
443 444 0.680921 TACCGGACGTTTCCTCGGAT 60.681 55.000 9.46 8.06 44.69 4.18
445 446 0.457035 CCGGACGTTTCCTCGGATAA 59.543 55.000 0.00 0.00 44.69 1.75
446 447 1.553308 CGGACGTTTCCTCGGATAAC 58.447 55.000 0.00 0.00 40.23 1.89
447 448 1.133790 CGGACGTTTCCTCGGATAACT 59.866 52.381 0.00 0.09 40.23 2.24
448 449 2.537401 GGACGTTTCCTCGGATAACTG 58.463 52.381 0.00 0.00 39.13 3.16
449 450 2.537401 GACGTTTCCTCGGATAACTGG 58.463 52.381 0.00 0.00 34.94 4.00
450 451 1.287425 CGTTTCCTCGGATAACTGGC 58.713 55.000 8.37 0.00 0.00 4.85
451 452 1.134788 CGTTTCCTCGGATAACTGGCT 60.135 52.381 8.37 0.00 0.00 4.75
452 453 2.677037 CGTTTCCTCGGATAACTGGCTT 60.677 50.000 8.37 0.00 0.00 4.35
453 454 3.429822 CGTTTCCTCGGATAACTGGCTTA 60.430 47.826 8.37 0.00 0.00 3.09
694 701 1.035385 CCAGCATTGGCAGCTCATCA 61.035 55.000 0.00 0.00 44.61 3.07
709 716 0.458543 CATCACCACTTCCTCGGACG 60.459 60.000 0.00 0.00 0.00 4.79
756 765 1.511464 GAGCTACCACGTGTCGTCG 60.511 63.158 15.65 3.53 38.32 5.12
905 914 1.211212 CCTTCACCATCAGCATCAGGA 59.789 52.381 0.00 0.00 0.00 3.86
915 924 4.290711 TCAGCATCAGGAAATCACAGAA 57.709 40.909 0.00 0.00 0.00 3.02
940 949 1.442769 ACAGCAGTCGCATACCAAAG 58.557 50.000 0.00 0.00 42.27 2.77
948 957 0.928229 CGCATACCAAAGACCTACGC 59.072 55.000 0.00 0.00 0.00 4.42
954 963 1.375523 CAAAGACCTACGCCCGCTT 60.376 57.895 0.00 0.00 0.00 4.68
955 964 0.108520 CAAAGACCTACGCCCGCTTA 60.109 55.000 0.00 0.00 0.00 3.09
956 965 0.108472 AAAGACCTACGCCCGCTTAC 60.108 55.000 0.00 0.00 0.00 2.34
957 966 2.275547 AAGACCTACGCCCGCTTACG 62.276 60.000 0.00 0.00 39.67 3.18
980 989 2.691927 CGGTTTCCGTTTAGCTTAGGT 58.308 47.619 0.00 0.00 42.73 3.08
983 992 3.005554 GTTTCCGTTTAGCTTAGGTCCC 58.994 50.000 0.00 0.00 0.00 4.46
984 993 1.941377 TCCGTTTAGCTTAGGTCCCA 58.059 50.000 0.00 0.00 0.00 4.37
986 995 1.134491 CCGTTTAGCTTAGGTCCCAGG 60.134 57.143 0.00 0.00 0.00 4.45
987 996 1.742750 CGTTTAGCTTAGGTCCCAGGC 60.743 57.143 0.00 0.00 0.00 4.85
988 997 1.280998 GTTTAGCTTAGGTCCCAGGCA 59.719 52.381 0.00 0.00 0.00 4.75
989 998 1.204146 TTAGCTTAGGTCCCAGGCAG 58.796 55.000 0.00 0.00 0.00 4.85
990 999 1.338136 TAGCTTAGGTCCCAGGCAGC 61.338 60.000 0.00 0.00 0.00 5.25
991 1000 2.187946 CTTAGGTCCCAGGCAGCG 59.812 66.667 0.00 0.00 0.00 5.18
992 1001 2.284331 TTAGGTCCCAGGCAGCGA 60.284 61.111 0.00 0.00 0.00 4.93
993 1002 2.303549 CTTAGGTCCCAGGCAGCGAG 62.304 65.000 0.00 0.00 0.00 5.03
1014 1023 4.899239 GCGATGGCCTCCGGTCAG 62.899 72.222 16.73 0.00 42.12 3.51
1015 1024 4.899239 CGATGGCCTCCGGTCAGC 62.899 72.222 3.32 2.55 42.12 4.26
1016 1025 3.785859 GATGGCCTCCGGTCAGCA 61.786 66.667 3.32 0.00 43.81 4.41
1017 1026 3.329542 GATGGCCTCCGGTCAGCAA 62.330 63.158 3.32 0.00 43.81 3.91
1018 1027 3.335356 ATGGCCTCCGGTCAGCAAG 62.335 63.158 3.32 0.00 42.12 4.01
1019 1028 3.706373 GGCCTCCGGTCAGCAAGA 61.706 66.667 0.00 0.00 0.00 3.02
1020 1029 2.125350 GCCTCCGGTCAGCAAGAG 60.125 66.667 0.00 0.00 0.00 2.85
1021 1030 2.650116 GCCTCCGGTCAGCAAGAGA 61.650 63.158 0.00 0.00 0.00 3.10
1023 1032 1.515020 CTCCGGTCAGCAAGAGAGG 59.485 63.158 0.00 0.00 0.00 3.69
1024 1033 1.228894 TCCGGTCAGCAAGAGAGGT 60.229 57.895 0.00 0.00 0.00 3.85
1025 1034 1.216710 CCGGTCAGCAAGAGAGGTC 59.783 63.158 0.00 0.00 0.00 3.85
1027 1036 1.216710 GGTCAGCAAGAGAGGTCGG 59.783 63.158 0.00 0.00 0.00 4.79
1028 1037 1.251527 GGTCAGCAAGAGAGGTCGGA 61.252 60.000 0.00 0.00 0.00 4.55
1029 1038 0.172352 GTCAGCAAGAGAGGTCGGAG 59.828 60.000 0.00 0.00 0.00 4.63
1030 1039 1.153667 CAGCAAGAGAGGTCGGAGC 60.154 63.158 0.00 0.00 0.00 4.70
1031 1040 1.304879 AGCAAGAGAGGTCGGAGCT 60.305 57.895 9.87 9.87 0.00 4.09
1033 1042 1.515020 CAAGAGAGGTCGGAGCTGG 59.485 63.158 15.38 0.00 0.00 4.85
1034 1043 0.967887 CAAGAGAGGTCGGAGCTGGA 60.968 60.000 15.38 0.00 0.00 3.86
1099 1108 4.516195 GGAAGACCCTCGAGGCGC 62.516 72.222 26.87 18.76 40.58 6.53
1100 1109 3.760035 GAAGACCCTCGAGGCGCA 61.760 66.667 26.87 0.00 40.58 6.09
1116 1125 4.803426 CAGGAGCACCTCGCCGAC 62.803 72.222 0.00 0.00 45.94 4.79
1121 1130 4.203076 GCACCTCGCCGACGGTAT 62.203 66.667 16.73 0.00 40.63 2.73
1122 1131 2.278596 CACCTCGCCGACGGTATG 60.279 66.667 16.73 6.17 40.63 2.39
1123 1132 4.203076 ACCTCGCCGACGGTATGC 62.203 66.667 16.73 0.00 40.63 3.14
1125 1134 2.104331 CTCGCCGACGGTATGCTT 59.896 61.111 16.73 0.00 40.63 3.91
1127 1136 2.960129 CGCCGACGGTATGCTTCC 60.960 66.667 16.73 0.00 34.97 3.46
1128 1137 2.499685 GCCGACGGTATGCTTCCT 59.500 61.111 16.73 0.00 0.00 3.36
1129 1138 1.883084 GCCGACGGTATGCTTCCTG 60.883 63.158 16.73 0.00 0.00 3.86
1130 1139 1.515954 CCGACGGTATGCTTCCTGT 59.484 57.895 5.48 0.00 0.00 4.00
1131 1140 0.742505 CCGACGGTATGCTTCCTGTA 59.257 55.000 5.48 0.00 0.00 2.74
1132 1141 1.535437 CCGACGGTATGCTTCCTGTAC 60.535 57.143 5.48 0.00 0.00 2.90
1134 1143 2.159282 CGACGGTATGCTTCCTGTACTT 60.159 50.000 0.00 0.00 0.00 2.24
1135 1144 3.187700 GACGGTATGCTTCCTGTACTTG 58.812 50.000 0.00 0.00 0.00 3.16
1136 1145 1.933853 CGGTATGCTTCCTGTACTTGC 59.066 52.381 0.00 0.00 0.00 4.01
1137 1146 1.933853 GGTATGCTTCCTGTACTTGCG 59.066 52.381 0.00 0.00 0.00 4.85
1140 1149 1.961793 TGCTTCCTGTACTTGCGTTT 58.038 45.000 0.00 0.00 0.00 3.60
1141 1150 1.871039 TGCTTCCTGTACTTGCGTTTC 59.129 47.619 0.00 0.00 0.00 2.78
1142 1151 1.136336 GCTTCCTGTACTTGCGTTTCG 60.136 52.381 0.00 0.00 0.00 3.46
1161 1170 1.719600 GCTTGAGCGATCTGTGACTT 58.280 50.000 0.90 0.00 0.00 3.01
1162 1171 1.658095 GCTTGAGCGATCTGTGACTTC 59.342 52.381 0.90 0.00 0.00 3.01
1163 1172 2.673610 GCTTGAGCGATCTGTGACTTCT 60.674 50.000 0.90 0.00 0.00 2.85
1165 1174 1.203287 TGAGCGATCTGTGACTTCTGG 59.797 52.381 0.90 0.00 0.00 3.86
1166 1175 1.203523 GAGCGATCTGTGACTTCTGGT 59.796 52.381 0.00 0.00 0.00 4.00
1167 1176 2.423892 GAGCGATCTGTGACTTCTGGTA 59.576 50.000 0.00 0.00 0.00 3.25
1168 1177 2.164624 AGCGATCTGTGACTTCTGGTAC 59.835 50.000 0.00 0.00 0.00 3.34
1169 1178 2.164624 GCGATCTGTGACTTCTGGTACT 59.835 50.000 0.00 0.00 0.00 2.73
1170 1179 3.732471 GCGATCTGTGACTTCTGGTACTC 60.732 52.174 0.00 0.00 0.00 2.59
1172 1181 4.673061 CGATCTGTGACTTCTGGTACTCAC 60.673 50.000 4.24 4.24 0.00 3.51
1173 1182 3.833732 TCTGTGACTTCTGGTACTCACT 58.166 45.455 10.81 0.00 0.00 3.41
1174 1183 4.981812 TCTGTGACTTCTGGTACTCACTA 58.018 43.478 10.81 0.00 0.00 2.74
1175 1184 4.760715 TCTGTGACTTCTGGTACTCACTAC 59.239 45.833 10.81 0.00 0.00 2.73
1176 1185 4.726583 TGTGACTTCTGGTACTCACTACT 58.273 43.478 10.81 0.00 0.00 2.57
1178 1187 4.079970 TGACTTCTGGTACTCACTACTGG 58.920 47.826 0.00 0.00 0.00 4.00
1179 1188 2.826725 ACTTCTGGTACTCACTACTGGC 59.173 50.000 0.00 0.00 0.00 4.85
1180 1189 1.460504 TCTGGTACTCACTACTGGCG 58.539 55.000 0.00 0.00 0.00 5.69
1182 1191 1.544691 CTGGTACTCACTACTGGCGTT 59.455 52.381 0.00 0.00 0.00 4.84
1183 1192 1.271379 TGGTACTCACTACTGGCGTTG 59.729 52.381 0.00 0.00 0.00 4.10
1185 1194 2.288640 GGTACTCACTACTGGCGTTGTT 60.289 50.000 0.00 0.00 0.00 2.83
1186 1195 1.865865 ACTCACTACTGGCGTTGTTG 58.134 50.000 0.00 0.00 0.00 3.33
1187 1196 1.138266 ACTCACTACTGGCGTTGTTGT 59.862 47.619 0.00 0.00 0.00 3.32
1188 1197 1.526887 CTCACTACTGGCGTTGTTGTG 59.473 52.381 11.14 11.14 40.58 3.33
1189 1198 1.134640 TCACTACTGGCGTTGTTGTGT 60.135 47.619 14.72 0.00 40.29 3.72
1190 1199 2.101082 TCACTACTGGCGTTGTTGTGTA 59.899 45.455 14.72 4.78 40.29 2.90
1191 1200 2.220133 CACTACTGGCGTTGTTGTGTAC 59.780 50.000 9.87 0.00 36.77 2.90
1192 1201 1.454276 CTACTGGCGTTGTTGTGTACG 59.546 52.381 0.00 0.00 40.55 3.67
1199 1208 2.710760 CGTTGTTGTGTACGCATTTGT 58.289 42.857 10.45 0.00 0.00 2.83
1200 1209 2.462203 CGTTGTTGTGTACGCATTTGTG 59.538 45.455 10.45 0.00 0.00 3.33
1201 1210 2.112475 TGTTGTGTACGCATTTGTGC 57.888 45.000 10.45 0.00 0.00 4.57
1202 1211 1.401905 TGTTGTGTACGCATTTGTGCA 59.598 42.857 10.45 0.79 34.41 4.57
1205 1214 0.109781 GTGTACGCATTTGTGCAGGG 60.110 55.000 0.39 0.00 35.09 4.45
1206 1215 1.154035 GTACGCATTTGTGCAGGGC 60.154 57.895 1.08 0.00 34.41 5.19
1231 1240 3.691342 CGGTGGGCAGACTCGGAA 61.691 66.667 0.00 0.00 0.00 4.30
1233 1242 2.266055 GTGGGCAGACTCGGAAGG 59.734 66.667 0.00 0.00 0.00 3.46
1234 1243 2.119611 TGGGCAGACTCGGAAGGA 59.880 61.111 0.00 0.00 0.00 3.36
1245 1254 4.120755 GGAAGGAGCAGCTGGGGG 62.121 72.222 17.12 0.00 0.00 5.40
1246 1255 3.011517 GAAGGAGCAGCTGGGGGA 61.012 66.667 17.12 0.00 0.00 4.81
1255 1264 4.103928 GCTGGGGGAGGAGGGGTA 62.104 72.222 0.00 0.00 0.00 3.69
1257 1266 2.877383 TGGGGGAGGAGGGGTACA 60.877 66.667 0.00 0.00 0.00 2.90
1258 1267 2.040779 GGGGGAGGAGGGGTACAG 60.041 72.222 0.00 0.00 0.00 2.74
1259 1268 2.768769 GGGGAGGAGGGGTACAGC 60.769 72.222 0.00 0.00 0.00 4.40
1260 1269 3.155167 GGGAGGAGGGGTACAGCG 61.155 72.222 0.00 0.00 0.00 5.18
1261 1270 2.043248 GGAGGAGGGGTACAGCGA 60.043 66.667 0.00 0.00 0.00 4.93
1262 1271 2.128507 GGAGGAGGGGTACAGCGAG 61.129 68.421 0.00 0.00 0.00 5.03
1263 1272 1.076923 GAGGAGGGGTACAGCGAGA 60.077 63.158 0.00 0.00 0.00 4.04
1264 1273 0.468400 GAGGAGGGGTACAGCGAGAT 60.468 60.000 0.00 0.00 0.00 2.75
1267 1276 1.749334 GAGGGGTACAGCGAGATGGG 61.749 65.000 0.00 0.00 0.00 4.00
1268 1277 2.064581 GGGGTACAGCGAGATGGGT 61.065 63.158 0.00 0.00 0.00 4.51
1269 1278 1.442148 GGGTACAGCGAGATGGGTC 59.558 63.158 0.00 0.00 0.00 4.46
1270 1279 1.327690 GGGTACAGCGAGATGGGTCA 61.328 60.000 0.00 0.00 0.00 4.02
1271 1280 0.179108 GGTACAGCGAGATGGGTCAC 60.179 60.000 0.00 0.00 0.00 3.67
1273 1282 1.067142 GTACAGCGAGATGGGTCACAA 60.067 52.381 0.00 0.00 0.00 3.33
1276 1285 1.450312 GCGAGATGGGTCACAAGGG 60.450 63.158 0.00 0.00 0.00 3.95
1277 1286 1.450312 CGAGATGGGTCACAAGGGC 60.450 63.158 0.00 0.00 0.00 5.19
1283 1292 4.410400 GGTCACAAGGGCGGGGAG 62.410 72.222 0.00 0.00 0.00 4.30
1284 1293 3.319198 GTCACAAGGGCGGGGAGA 61.319 66.667 0.00 0.00 0.00 3.71
1285 1294 3.319198 TCACAAGGGCGGGGAGAC 61.319 66.667 0.00 0.00 0.00 3.36
1286 1295 3.322466 CACAAGGGCGGGGAGACT 61.322 66.667 0.00 0.00 0.00 3.24
1287 1296 3.003763 ACAAGGGCGGGGAGACTC 61.004 66.667 0.00 0.00 0.00 3.36
1305 1314 4.168291 GGAAGGAGCAGCTCGGGG 62.168 72.222 16.47 0.00 0.00 5.73
1306 1315 3.077556 GAAGGAGCAGCTCGGGGA 61.078 66.667 16.47 0.00 0.00 4.81
1328 1337 4.045469 GGGTACCGTGAGATGGGT 57.955 61.111 5.65 0.00 40.86 4.51
1329 1338 1.821258 GGGTACCGTGAGATGGGTC 59.179 63.158 5.65 0.00 40.86 4.46
1330 1339 1.436336 GGTACCGTGAGATGGGTCG 59.564 63.158 0.00 0.00 37.75 4.79
1331 1340 1.226888 GTACCGTGAGATGGGTCGC 60.227 63.158 0.00 0.00 37.75 5.19
1333 1342 1.252215 TACCGTGAGATGGGTCGCAA 61.252 55.000 0.00 0.00 35.89 4.85
1336 1345 1.450312 GTGAGATGGGTCGCAAGGG 60.450 63.158 0.00 0.00 35.89 3.95
1337 1346 1.612146 TGAGATGGGTCGCAAGGGA 60.612 57.895 0.00 0.00 30.89 4.20
1343 1352 3.787001 GGTCGCAAGGGAGGGGAG 61.787 72.222 0.00 0.00 38.47 4.30
1344 1353 2.683933 GTCGCAAGGGAGGGGAGA 60.684 66.667 0.00 0.00 38.47 3.71
1345 1354 2.683933 TCGCAAGGGAGGGGAGAC 60.684 66.667 0.00 0.00 38.47 3.36
1346 1355 2.685380 CGCAAGGGAGGGGAGACT 60.685 66.667 0.00 0.00 0.00 3.24
1347 1356 2.726351 CGCAAGGGAGGGGAGACTC 61.726 68.421 0.00 0.00 36.76 3.36
1351 1360 2.683933 GGGAGGGGAGACTCGCAA 60.684 66.667 19.96 0.00 46.27 4.85
1353 1362 2.726351 GGAGGGGAGACTCGCAAGG 61.726 68.421 19.96 0.00 38.39 3.61
1354 1363 1.682684 GAGGGGAGACTCGCAAGGA 60.683 63.158 19.96 0.00 34.16 3.36
1366 1375 3.333219 CAAGGAGCAGCTGGGGGA 61.333 66.667 17.12 0.00 0.00 4.81
1375 1384 4.103928 GCTGGGGGAGGAGGGGTA 62.104 72.222 0.00 0.00 0.00 3.69
1690 1707 1.407618 TGTAGGCGATCGCATGTACTT 59.592 47.619 38.00 17.44 44.11 2.24
1705 1722 4.006780 TGTACTTGTGATCATGTGTGCT 57.993 40.909 0.00 0.00 34.54 4.40
1706 1723 5.146010 TGTACTTGTGATCATGTGTGCTA 57.854 39.130 0.00 0.00 34.54 3.49
1707 1724 5.170748 TGTACTTGTGATCATGTGTGCTAG 58.829 41.667 0.00 0.00 34.54 3.42
1776 5113 5.651576 GTCCTAGTAGCTTGTAGTAGGTGTT 59.348 44.000 13.37 0.00 40.10 3.32
1812 5149 4.836825 AGTCAGCTTGCTAATGTATGTGT 58.163 39.130 0.00 0.00 0.00 3.72
1847 5233 4.641396 TCAGGTCGTTGTTGAATCAGAAT 58.359 39.130 0.00 0.00 0.00 2.40
1871 5257 8.621532 ATGTGTGCTCTTAAATTGTTCTCTTA 57.378 30.769 0.00 0.00 0.00 2.10
1926 5312 1.338960 GGCCCATGAACAAATGGTTGG 60.339 52.381 0.00 0.00 44.93 3.77
1927 5313 1.945355 GCCCATGAACAAATGGTTGGC 60.945 52.381 0.00 0.00 44.93 4.52
1928 5314 1.347050 CCCATGAACAAATGGTTGGCA 59.653 47.619 0.00 0.00 44.93 4.92
1929 5315 2.027007 CCCATGAACAAATGGTTGGCAT 60.027 45.455 0.00 0.00 44.93 4.40
1930 5316 3.264104 CCATGAACAAATGGTTGGCATC 58.736 45.455 0.00 0.00 41.98 3.91
1963 5349 0.394352 ATCAATTCCTGCGGTCCACC 60.394 55.000 0.00 0.00 0.00 4.61
2154 5731 0.448990 CACATTGGTCGGTGCATGAG 59.551 55.000 0.00 0.00 0.00 2.90
2186 5771 1.901833 GGTGTCGGTTAGGGTTTAGGA 59.098 52.381 0.00 0.00 0.00 2.94
2318 5947 5.429957 TTTTTGTAAATTTGCCATGTGCC 57.570 34.783 0.00 0.00 40.16 5.01
2343 5972 6.960431 CGACTGCAAACATTTTCAAAATTTGT 59.040 30.769 5.56 0.00 33.78 2.83
2380 6021 9.486123 TCCCTTAATTTTCCATGTGATTATTGA 57.514 29.630 0.00 0.00 0.00 2.57
2381 6022 9.754382 CCCTTAATTTTCCATGTGATTATTGAG 57.246 33.333 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 3.390639 TGGCAATCCTTTGGTGAAAATGT 59.609 39.130 0.00 0.00 33.22 2.71
3 4 4.005487 TGGCAATCCTTTGGTGAAAATG 57.995 40.909 0.00 0.00 33.22 2.32
4 5 4.533311 AGATGGCAATCCTTTGGTGAAAAT 59.467 37.500 0.00 0.00 32.77 1.82
5 6 3.903090 AGATGGCAATCCTTTGGTGAAAA 59.097 39.130 0.00 0.00 32.77 2.29
6 7 3.509442 AGATGGCAATCCTTTGGTGAAA 58.491 40.909 0.00 0.00 32.77 2.69
7 8 3.091545 GAGATGGCAATCCTTTGGTGAA 58.908 45.455 0.00 0.00 32.77 3.18
8 9 2.621407 GGAGATGGCAATCCTTTGGTGA 60.621 50.000 13.35 0.00 32.77 4.02
9 10 1.753073 GGAGATGGCAATCCTTTGGTG 59.247 52.381 13.35 0.00 32.77 4.17
10 11 1.642762 AGGAGATGGCAATCCTTTGGT 59.357 47.619 16.59 0.00 43.62 3.67
11 12 2.091994 AGAGGAGATGGCAATCCTTTGG 60.092 50.000 21.52 0.00 46.12 3.28
12 13 3.117963 AGAGAGGAGATGGCAATCCTTTG 60.118 47.826 21.52 0.00 46.12 2.77
13 14 3.121688 AGAGAGGAGATGGCAATCCTTT 58.878 45.455 21.52 17.34 46.12 3.11
14 15 2.774173 AGAGAGGAGATGGCAATCCTT 58.226 47.619 21.52 13.42 46.12 3.36
16 17 3.574354 AAAGAGAGGAGATGGCAATCC 57.426 47.619 12.86 12.86 32.77 3.01
17 18 4.097589 CCAAAAAGAGAGGAGATGGCAATC 59.902 45.833 0.00 0.00 0.00 2.67
18 19 4.021916 CCAAAAAGAGAGGAGATGGCAAT 58.978 43.478 0.00 0.00 0.00 3.56
19 20 3.074390 TCCAAAAAGAGAGGAGATGGCAA 59.926 43.478 0.00 0.00 0.00 4.52
20 21 2.644299 TCCAAAAAGAGAGGAGATGGCA 59.356 45.455 0.00 0.00 0.00 4.92
21 22 3.356529 TCCAAAAAGAGAGGAGATGGC 57.643 47.619 0.00 0.00 0.00 4.40
22 23 6.404074 CGAAAATCCAAAAAGAGAGGAGATGG 60.404 42.308 0.00 0.00 34.40 3.51
23 24 6.404074 CCGAAAATCCAAAAAGAGAGGAGATG 60.404 42.308 0.00 0.00 34.40 2.90
24 25 5.649831 CCGAAAATCCAAAAAGAGAGGAGAT 59.350 40.000 0.00 0.00 34.40 2.75
25 26 5.003804 CCGAAAATCCAAAAAGAGAGGAGA 58.996 41.667 0.00 0.00 34.40 3.71
26 27 4.156739 CCCGAAAATCCAAAAAGAGAGGAG 59.843 45.833 0.00 0.00 34.40 3.69
27 28 4.079253 CCCGAAAATCCAAAAAGAGAGGA 58.921 43.478 0.00 0.00 35.59 3.71
28 29 4.079253 TCCCGAAAATCCAAAAAGAGAGG 58.921 43.478 0.00 0.00 0.00 3.69
29 30 4.518970 TGTCCCGAAAATCCAAAAAGAGAG 59.481 41.667 0.00 0.00 0.00 3.20
30 31 4.465886 TGTCCCGAAAATCCAAAAAGAGA 58.534 39.130 0.00 0.00 0.00 3.10
31 32 4.278419 ACTGTCCCGAAAATCCAAAAAGAG 59.722 41.667 0.00 0.00 0.00 2.85
32 33 4.211920 ACTGTCCCGAAAATCCAAAAAGA 58.788 39.130 0.00 0.00 0.00 2.52
33 34 4.278419 AGACTGTCCCGAAAATCCAAAAAG 59.722 41.667 3.76 0.00 0.00 2.27
34 35 4.211920 AGACTGTCCCGAAAATCCAAAAA 58.788 39.130 3.76 0.00 0.00 1.94
35 36 3.827722 AGACTGTCCCGAAAATCCAAAA 58.172 40.909 3.76 0.00 0.00 2.44
36 37 3.502123 AGACTGTCCCGAAAATCCAAA 57.498 42.857 3.76 0.00 0.00 3.28
37 38 3.502123 AAGACTGTCCCGAAAATCCAA 57.498 42.857 3.76 0.00 0.00 3.53
38 39 4.202377 TGTTAAGACTGTCCCGAAAATCCA 60.202 41.667 3.76 0.00 0.00 3.41
39 40 4.320870 TGTTAAGACTGTCCCGAAAATCC 58.679 43.478 3.76 0.00 0.00 3.01
40 41 6.496338 AATGTTAAGACTGTCCCGAAAATC 57.504 37.500 3.76 0.00 0.00 2.17
41 42 5.121768 CGAATGTTAAGACTGTCCCGAAAAT 59.878 40.000 3.76 0.00 0.00 1.82
42 43 4.449743 CGAATGTTAAGACTGTCCCGAAAA 59.550 41.667 3.76 0.00 0.00 2.29
43 44 3.991773 CGAATGTTAAGACTGTCCCGAAA 59.008 43.478 3.76 0.00 0.00 3.46
44 45 3.581755 CGAATGTTAAGACTGTCCCGAA 58.418 45.455 3.76 0.00 0.00 4.30
45 46 2.673043 GCGAATGTTAAGACTGTCCCGA 60.673 50.000 3.76 0.00 0.00 5.14
46 47 1.659098 GCGAATGTTAAGACTGTCCCG 59.341 52.381 3.76 0.00 0.00 5.14
47 48 2.007608 GGCGAATGTTAAGACTGTCCC 58.992 52.381 3.76 0.00 0.00 4.46
48 49 1.659098 CGGCGAATGTTAAGACTGTCC 59.341 52.381 0.00 0.00 0.00 4.02
49 50 2.344741 GTCGGCGAATGTTAAGACTGTC 59.655 50.000 12.92 0.00 0.00 3.51
50 51 2.334838 GTCGGCGAATGTTAAGACTGT 58.665 47.619 12.92 0.00 0.00 3.55
51 52 1.320555 CGTCGGCGAATGTTAAGACTG 59.679 52.381 12.92 0.00 41.33 3.51
52 53 1.625616 CGTCGGCGAATGTTAAGACT 58.374 50.000 12.92 0.00 41.33 3.24
53 54 0.024619 GCGTCGGCGAATGTTAAGAC 59.975 55.000 16.53 0.00 41.33 3.01
54 55 1.079875 GGCGTCGGCGAATGTTAAGA 61.080 55.000 16.53 0.00 41.24 2.10
55 56 1.347221 GGCGTCGGCGAATGTTAAG 59.653 57.895 16.53 0.00 41.24 1.85
56 57 2.101835 GGGCGTCGGCGAATGTTAA 61.102 57.895 16.53 0.00 41.24 2.01
57 58 2.509786 GGGCGTCGGCGAATGTTA 60.510 61.111 16.53 0.00 41.24 2.41
61 62 3.646023 TAAACGGGCGTCGGCGAAT 62.646 57.895 16.53 1.72 44.45 3.34
62 63 4.354939 TAAACGGGCGTCGGCGAA 62.355 61.111 16.53 0.00 44.45 4.70
66 67 3.174573 GTCGTAAACGGGCGTCGG 61.175 66.667 2.24 0.00 44.45 4.79
67 68 2.126734 AGTCGTAAACGGGCGTCG 60.127 61.111 2.24 0.00 45.88 5.12
68 69 1.069378 CTCAGTCGTAAACGGGCGTC 61.069 60.000 2.24 0.00 40.29 5.19
69 70 1.080974 CTCAGTCGTAAACGGGCGT 60.081 57.895 2.24 0.00 40.29 5.68
70 71 1.804326 CCTCAGTCGTAAACGGGCG 60.804 63.158 2.24 0.00 40.29 6.13
71 72 1.447314 CCCTCAGTCGTAAACGGGC 60.447 63.158 2.24 0.00 40.29 6.13
72 73 0.172803 CTCCCTCAGTCGTAAACGGG 59.827 60.000 2.24 0.00 40.29 5.28
73 74 0.172803 CCTCCCTCAGTCGTAAACGG 59.827 60.000 2.24 0.00 40.29 4.44
74 75 0.172803 CCCTCCCTCAGTCGTAAACG 59.827 60.000 0.00 0.00 41.45 3.60
75 76 1.067071 CACCCTCCCTCAGTCGTAAAC 60.067 57.143 0.00 0.00 0.00 2.01
76 77 1.263356 CACCCTCCCTCAGTCGTAAA 58.737 55.000 0.00 0.00 0.00 2.01
77 78 0.113776 ACACCCTCCCTCAGTCGTAA 59.886 55.000 0.00 0.00 0.00 3.18
78 79 0.113776 AACACCCTCCCTCAGTCGTA 59.886 55.000 0.00 0.00 0.00 3.43
79 80 0.113776 TAACACCCTCCCTCAGTCGT 59.886 55.000 0.00 0.00 0.00 4.34
80 81 0.818296 CTAACACCCTCCCTCAGTCG 59.182 60.000 0.00 0.00 0.00 4.18
81 82 2.233305 TCTAACACCCTCCCTCAGTC 57.767 55.000 0.00 0.00 0.00 3.51
82 83 2.715763 TTCTAACACCCTCCCTCAGT 57.284 50.000 0.00 0.00 0.00 3.41
83 84 8.532819 GTTATATATTCTAACACCCTCCCTCAG 58.467 40.741 0.00 0.00 0.00 3.35
84 85 7.456902 GGTTATATATTCTAACACCCTCCCTCA 59.543 40.741 0.00 0.00 31.98 3.86
85 86 7.363617 CGGTTATATATTCTAACACCCTCCCTC 60.364 44.444 0.00 0.00 31.98 4.30
86 87 6.439692 CGGTTATATATTCTAACACCCTCCCT 59.560 42.308 0.00 0.00 31.98 4.20
87 88 6.212187 ACGGTTATATATTCTAACACCCTCCC 59.788 42.308 0.00 0.00 31.98 4.30
88 89 7.237209 ACGGTTATATATTCTAACACCCTCC 57.763 40.000 0.00 0.00 31.98 4.30
91 92 9.933723 ACAATACGGTTATATATTCTAACACCC 57.066 33.333 0.00 0.00 31.98 4.61
126 127 8.571336 GGACTACACATATACAACCGTATAACT 58.429 37.037 0.00 0.00 42.46 2.24
127 128 8.571336 AGGACTACACATATACAACCGTATAAC 58.429 37.037 0.00 0.00 42.46 1.89
128 129 8.696043 AGGACTACACATATACAACCGTATAA 57.304 34.615 0.00 0.00 42.46 0.98
129 130 8.570488 CAAGGACTACACATATACAACCGTATA 58.430 37.037 0.00 0.00 43.16 1.47
130 131 7.069085 ACAAGGACTACACATATACAACCGTAT 59.931 37.037 0.00 0.00 41.34 3.06
131 132 6.377996 ACAAGGACTACACATATACAACCGTA 59.622 38.462 0.00 0.00 0.00 4.02
132 133 5.186409 ACAAGGACTACACATATACAACCGT 59.814 40.000 0.00 0.00 0.00 4.83
133 134 5.657474 ACAAGGACTACACATATACAACCG 58.343 41.667 0.00 0.00 0.00 4.44
134 135 9.909644 CTATACAAGGACTACACATATACAACC 57.090 37.037 0.00 0.00 0.00 3.77
152 153 7.747799 CGTACAATATACGGACACCTATACAAG 59.252 40.741 0.00 0.00 37.29 3.16
153 154 7.443879 TCGTACAATATACGGACACCTATACAA 59.556 37.037 6.63 0.00 40.90 2.41
154 155 6.934083 TCGTACAATATACGGACACCTATACA 59.066 38.462 6.63 0.00 40.90 2.29
155 156 7.364522 TCGTACAATATACGGACACCTATAC 57.635 40.000 6.63 0.00 40.90 1.47
156 157 9.098355 GTATCGTACAATATACGGACACCTATA 57.902 37.037 6.63 0.00 40.90 1.31
157 158 7.201556 CGTATCGTACAATATACGGACACCTAT 60.202 40.741 17.94 0.00 44.43 2.57
158 159 6.090763 CGTATCGTACAATATACGGACACCTA 59.909 42.308 17.94 0.00 44.43 3.08
159 160 5.106948 CGTATCGTACAATATACGGACACCT 60.107 44.000 17.94 0.00 44.43 4.00
160 161 5.082059 CGTATCGTACAATATACGGACACC 58.918 45.833 17.94 0.00 44.43 4.16
161 162 5.915857 TCGTATCGTACAATATACGGACAC 58.084 41.667 22.13 2.50 46.79 3.67
162 163 6.538189 TTCGTATCGTACAATATACGGACA 57.462 37.500 22.13 11.10 46.79 4.02
164 165 6.646653 AGAGTTCGTATCGTACAATATACGGA 59.353 38.462 22.13 15.96 46.79 4.69
165 166 6.735510 CAGAGTTCGTATCGTACAATATACGG 59.264 42.308 22.13 11.03 46.79 4.02
167 168 6.522510 GGCAGAGTTCGTATCGTACAATATAC 59.477 42.308 0.00 0.00 29.93 1.47
168 169 6.429078 AGGCAGAGTTCGTATCGTACAATATA 59.571 38.462 0.00 0.00 29.93 0.86
169 170 5.241064 AGGCAGAGTTCGTATCGTACAATAT 59.759 40.000 0.00 0.00 29.93 1.28
170 171 4.577693 AGGCAGAGTTCGTATCGTACAATA 59.422 41.667 0.00 0.00 29.93 1.90
171 172 3.380637 AGGCAGAGTTCGTATCGTACAAT 59.619 43.478 0.00 0.00 29.93 2.71
172 173 2.751259 AGGCAGAGTTCGTATCGTACAA 59.249 45.455 0.00 0.00 29.93 2.41
173 174 2.362736 AGGCAGAGTTCGTATCGTACA 58.637 47.619 0.00 0.00 29.93 2.90
174 175 3.106672 CAAGGCAGAGTTCGTATCGTAC 58.893 50.000 0.00 0.00 0.00 3.67
175 176 2.751259 ACAAGGCAGAGTTCGTATCGTA 59.249 45.455 0.00 0.00 0.00 3.43
176 177 1.544691 ACAAGGCAGAGTTCGTATCGT 59.455 47.619 0.00 0.00 0.00 3.73
177 178 2.279582 ACAAGGCAGAGTTCGTATCG 57.720 50.000 0.00 0.00 0.00 2.92
178 179 5.593010 AGATTACAAGGCAGAGTTCGTATC 58.407 41.667 0.00 0.00 0.00 2.24
179 180 5.599999 AGATTACAAGGCAGAGTTCGTAT 57.400 39.130 0.00 0.00 0.00 3.06
180 181 6.710597 ATAGATTACAAGGCAGAGTTCGTA 57.289 37.500 0.00 0.00 0.00 3.43
181 182 3.963428 AGATTACAAGGCAGAGTTCGT 57.037 42.857 0.00 0.00 0.00 3.85
203 204 9.448438 GTGGTGCCTTGTATTGATCAATATATA 57.552 33.333 26.66 15.60 35.90 0.86
204 205 7.944000 TGTGGTGCCTTGTATTGATCAATATAT 59.056 33.333 26.66 7.86 35.90 0.86
205 206 7.286313 TGTGGTGCCTTGTATTGATCAATATA 58.714 34.615 26.66 22.30 35.90 0.86
206 207 6.128486 TGTGGTGCCTTGTATTGATCAATAT 58.872 36.000 26.66 8.92 35.90 1.28
207 208 5.504853 TGTGGTGCCTTGTATTGATCAATA 58.495 37.500 21.67 21.67 32.50 1.90
208 209 4.343231 TGTGGTGCCTTGTATTGATCAAT 58.657 39.130 23.75 23.75 34.93 2.57
209 210 3.760738 TGTGGTGCCTTGTATTGATCAA 58.239 40.909 11.26 11.26 0.00 2.57
210 211 3.431673 TGTGGTGCCTTGTATTGATCA 57.568 42.857 0.00 0.00 0.00 2.92
211 212 3.426159 CGTTGTGGTGCCTTGTATTGATC 60.426 47.826 0.00 0.00 0.00 2.92
212 213 2.487762 CGTTGTGGTGCCTTGTATTGAT 59.512 45.455 0.00 0.00 0.00 2.57
213 214 1.876799 CGTTGTGGTGCCTTGTATTGA 59.123 47.619 0.00 0.00 0.00 2.57
214 215 1.606668 ACGTTGTGGTGCCTTGTATTG 59.393 47.619 0.00 0.00 0.00 1.90
215 216 1.606668 CACGTTGTGGTGCCTTGTATT 59.393 47.619 0.00 0.00 0.00 1.89
216 217 1.234821 CACGTTGTGGTGCCTTGTAT 58.765 50.000 0.00 0.00 0.00 2.29
217 218 0.107606 ACACGTTGTGGTGCCTTGTA 60.108 50.000 1.64 0.00 41.65 2.41
218 219 1.377987 ACACGTTGTGGTGCCTTGT 60.378 52.632 1.64 0.00 41.65 3.16
219 220 1.063972 CACACGTTGTGGTGCCTTG 59.936 57.895 9.43 0.00 44.27 3.61
220 221 3.508474 CACACGTTGTGGTGCCTT 58.492 55.556 9.43 0.00 44.27 4.35
237 238 6.051179 ACTCACTGTAAGATTAGGGAAACC 57.949 41.667 0.00 0.00 46.38 3.27
238 239 7.981102 AAACTCACTGTAAGATTAGGGAAAC 57.019 36.000 0.00 0.00 37.43 2.78
274 275 8.482128 GGGGGTCAAAATAAATGATGTGATTAA 58.518 33.333 0.00 0.00 0.00 1.40
275 276 7.621285 TGGGGGTCAAAATAAATGATGTGATTA 59.379 33.333 0.00 0.00 0.00 1.75
276 277 6.443206 TGGGGGTCAAAATAAATGATGTGATT 59.557 34.615 0.00 0.00 0.00 2.57
277 278 5.963253 TGGGGGTCAAAATAAATGATGTGAT 59.037 36.000 0.00 0.00 0.00 3.06
278 279 5.186797 GTGGGGGTCAAAATAAATGATGTGA 59.813 40.000 0.00 0.00 0.00 3.58
279 280 5.046735 TGTGGGGGTCAAAATAAATGATGTG 60.047 40.000 0.00 0.00 0.00 3.21
280 281 5.090139 TGTGGGGGTCAAAATAAATGATGT 58.910 37.500 0.00 0.00 0.00 3.06
281 282 5.674052 TGTGGGGGTCAAAATAAATGATG 57.326 39.130 0.00 0.00 0.00 3.07
282 283 5.396660 GCATGTGGGGGTCAAAATAAATGAT 60.397 40.000 0.00 0.00 0.00 2.45
283 284 4.081198 GCATGTGGGGGTCAAAATAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
284 285 4.190772 GCATGTGGGGGTCAAAATAAATG 58.809 43.478 0.00 0.00 0.00 2.32
285 286 3.199727 GGCATGTGGGGGTCAAAATAAAT 59.800 43.478 0.00 0.00 0.00 1.40
286 287 2.569404 GGCATGTGGGGGTCAAAATAAA 59.431 45.455 0.00 0.00 0.00 1.40
287 288 2.183679 GGCATGTGGGGGTCAAAATAA 58.816 47.619 0.00 0.00 0.00 1.40
288 289 1.621072 GGGCATGTGGGGGTCAAAATA 60.621 52.381 0.00 0.00 0.00 1.40
289 290 0.909133 GGGCATGTGGGGGTCAAAAT 60.909 55.000 0.00 0.00 0.00 1.82
290 291 1.535202 GGGCATGTGGGGGTCAAAA 60.535 57.895 0.00 0.00 0.00 2.44
291 292 2.119391 GGGCATGTGGGGGTCAAA 59.881 61.111 0.00 0.00 0.00 2.69
292 293 2.863484 AGGGCATGTGGGGGTCAA 60.863 61.111 0.00 0.00 0.00 3.18
293 294 3.338250 GAGGGCATGTGGGGGTCA 61.338 66.667 0.00 0.00 0.00 4.02
294 295 3.017581 AGAGGGCATGTGGGGGTC 61.018 66.667 0.00 0.00 0.00 4.46
295 296 3.017581 GAGAGGGCATGTGGGGGT 61.018 66.667 0.00 0.00 0.00 4.95
296 297 3.813724 GGAGAGGGCATGTGGGGG 61.814 72.222 0.00 0.00 0.00 5.40
297 298 2.693864 AGGAGAGGGCATGTGGGG 60.694 66.667 0.00 0.00 0.00 4.96
298 299 1.351080 ATGAGGAGAGGGCATGTGGG 61.351 60.000 0.00 0.00 0.00 4.61
299 300 1.347050 CTATGAGGAGAGGGCATGTGG 59.653 57.143 0.00 0.00 0.00 4.17
300 301 2.045524 ACTATGAGGAGAGGGCATGTG 58.954 52.381 0.00 0.00 0.00 3.21
301 302 2.045524 CACTATGAGGAGAGGGCATGT 58.954 52.381 0.00 0.00 0.00 3.21
302 303 1.270732 GCACTATGAGGAGAGGGCATG 60.271 57.143 0.00 0.00 0.00 4.06
303 304 1.055040 GCACTATGAGGAGAGGGCAT 58.945 55.000 0.00 0.00 0.00 4.40
304 305 1.395045 CGCACTATGAGGAGAGGGCA 61.395 60.000 0.00 0.00 0.00 5.36
305 306 1.365633 CGCACTATGAGGAGAGGGC 59.634 63.158 0.00 0.00 0.00 5.19
306 307 1.365633 GCGCACTATGAGGAGAGGG 59.634 63.158 0.30 0.00 0.00 4.30
307 308 0.461548 TTGCGCACTATGAGGAGAGG 59.538 55.000 11.12 0.00 0.00 3.69
308 309 2.200067 CTTTGCGCACTATGAGGAGAG 58.800 52.381 11.12 0.00 0.00 3.20
309 310 1.550524 ACTTTGCGCACTATGAGGAGA 59.449 47.619 11.12 0.00 0.00 3.71
310 311 2.015736 ACTTTGCGCACTATGAGGAG 57.984 50.000 11.12 0.60 0.00 3.69
311 312 2.738643 GCTACTTTGCGCACTATGAGGA 60.739 50.000 11.12 0.00 0.00 3.71
312 313 1.594862 GCTACTTTGCGCACTATGAGG 59.405 52.381 11.12 0.00 0.00 3.86
313 314 2.544685 AGCTACTTTGCGCACTATGAG 58.455 47.619 11.12 5.28 38.13 2.90
314 315 2.672961 AGCTACTTTGCGCACTATGA 57.327 45.000 11.12 0.00 38.13 2.15
315 316 2.219674 GCTAGCTACTTTGCGCACTATG 59.780 50.000 11.12 0.65 38.13 2.23
316 317 2.101582 AGCTAGCTACTTTGCGCACTAT 59.898 45.455 17.69 0.00 38.13 2.12
317 318 1.476891 AGCTAGCTACTTTGCGCACTA 59.523 47.619 17.69 6.26 38.13 2.74
318 319 0.247736 AGCTAGCTACTTTGCGCACT 59.752 50.000 17.69 5.18 38.13 4.40
319 320 0.371645 CAGCTAGCTACTTTGCGCAC 59.628 55.000 18.86 0.00 38.13 5.34
320 321 0.740868 CCAGCTAGCTACTTTGCGCA 60.741 55.000 18.86 5.66 38.13 6.09
321 322 1.432270 CCCAGCTAGCTACTTTGCGC 61.432 60.000 18.86 0.00 38.13 6.09
322 323 1.432270 GCCCAGCTAGCTACTTTGCG 61.432 60.000 18.86 2.66 38.13 4.85
323 324 1.432270 CGCCCAGCTAGCTACTTTGC 61.432 60.000 18.86 13.96 0.00 3.68
324 325 1.432270 GCGCCCAGCTAGCTACTTTG 61.432 60.000 18.86 5.33 44.04 2.77
325 326 1.153349 GCGCCCAGCTAGCTACTTT 60.153 57.895 18.86 0.00 44.04 2.66
326 327 2.501610 GCGCCCAGCTAGCTACTT 59.498 61.111 18.86 0.00 44.04 2.24
346 347 0.734942 TAAAAGCGAGGCGTTCTCCG 60.735 55.000 0.00 0.00 39.30 4.63
347 348 1.327764 CATAAAAGCGAGGCGTTCTCC 59.672 52.381 0.00 0.00 39.30 3.71
348 349 1.327764 CCATAAAAGCGAGGCGTTCTC 59.672 52.381 0.00 0.00 39.10 2.87
349 350 1.338769 ACCATAAAAGCGAGGCGTTCT 60.339 47.619 0.00 0.00 28.93 3.01
350 351 1.084289 ACCATAAAAGCGAGGCGTTC 58.916 50.000 0.00 0.00 28.93 3.95
351 352 0.802494 CACCATAAAAGCGAGGCGTT 59.198 50.000 0.00 0.00 0.00 4.84
352 353 1.644786 GCACCATAAAAGCGAGGCGT 61.645 55.000 0.00 0.00 0.00 5.68
353 354 1.062525 GCACCATAAAAGCGAGGCG 59.937 57.895 0.00 0.00 0.00 5.52
364 365 2.751036 TCGTCCGGTCGCACCATA 60.751 61.111 16.54 0.00 38.47 2.74
396 397 2.372040 TACAACGCTTGGACGCCTGT 62.372 55.000 3.42 0.00 36.64 4.00
410 411 1.340889 TCCGGTATGGGCGTATACAAC 59.659 52.381 0.00 0.00 38.76 3.32
437 438 3.834610 CCGTATAAGCCAGTTATCCGAG 58.165 50.000 0.00 0.00 33.45 4.63
438 439 2.029649 GCCGTATAAGCCAGTTATCCGA 60.030 50.000 0.00 0.00 33.45 4.55
439 440 2.334838 GCCGTATAAGCCAGTTATCCG 58.665 52.381 0.00 0.00 33.16 4.18
449 450 3.996888 GCGCACGGCCGTATAAGC 61.997 66.667 33.70 28.09 34.80 3.09
450 451 2.583868 TGCGCACGGCCGTATAAG 60.584 61.111 33.70 20.25 42.61 1.73
451 452 2.886604 GTGCGCACGGCCGTATAA 60.887 61.111 33.70 14.45 42.61 0.98
452 453 4.131088 TGTGCGCACGGCCGTATA 62.131 61.111 33.70 11.32 42.61 1.47
588 592 4.015406 ATGCTCGGGTGTTCGGCA 62.015 61.111 0.00 0.00 39.31 5.69
694 701 2.273912 GGTCGTCCGAGGAAGTGGT 61.274 63.158 5.07 0.00 0.00 4.16
756 765 2.772691 GCATGCAAGCCTCTGGAGC 61.773 63.158 14.21 0.00 0.00 4.70
789 798 0.179171 CGTTCCTGCTGTATCGACGT 60.179 55.000 0.00 0.00 0.00 4.34
790 799 0.866061 CCGTTCCTGCTGTATCGACG 60.866 60.000 0.00 0.00 0.00 5.12
792 801 1.672854 CCCCGTTCCTGCTGTATCGA 61.673 60.000 0.00 0.00 0.00 3.59
793 802 1.227263 CCCCGTTCCTGCTGTATCG 60.227 63.158 0.00 0.00 0.00 2.92
794 803 0.105039 CTCCCCGTTCCTGCTGTATC 59.895 60.000 0.00 0.00 0.00 2.24
795 804 0.325296 TCTCCCCGTTCCTGCTGTAT 60.325 55.000 0.00 0.00 0.00 2.29
796 805 0.970937 CTCTCCCCGTTCCTGCTGTA 60.971 60.000 0.00 0.00 0.00 2.74
797 806 2.203788 TCTCCCCGTTCCTGCTGT 60.204 61.111 0.00 0.00 0.00 4.40
798 807 2.581354 CTCTCCCCGTTCCTGCTG 59.419 66.667 0.00 0.00 0.00 4.41
888 897 3.054213 TGATTTCCTGATGCTGATGGTGA 60.054 43.478 0.00 0.00 0.00 4.02
890 899 3.285484 GTGATTTCCTGATGCTGATGGT 58.715 45.455 0.00 0.00 0.00 3.55
905 914 3.023119 TGCTGTTGGTGTTCTGTGATTT 58.977 40.909 0.00 0.00 0.00 2.17
915 924 0.034756 TATGCGACTGCTGTTGGTGT 59.965 50.000 12.43 0.00 43.34 4.16
940 949 1.714899 TACGTAAGCGGGCGTAGGTC 61.715 60.000 13.55 0.00 43.45 3.85
976 985 2.759973 CTCGCTGCCTGGGACCTA 60.760 66.667 0.00 0.00 33.86 3.08
1005 1014 1.254284 ACCTCTCTTGCTGACCGGAG 61.254 60.000 9.46 0.00 0.00 4.63
1006 1015 1.228894 ACCTCTCTTGCTGACCGGA 60.229 57.895 9.46 0.00 0.00 5.14
1008 1017 1.153939 CGACCTCTCTTGCTGACCG 60.154 63.158 0.00 0.00 0.00 4.79
1010 1019 0.172352 CTCCGACCTCTCTTGCTGAC 59.828 60.000 0.00 0.00 0.00 3.51
1011 1020 1.599606 GCTCCGACCTCTCTTGCTGA 61.600 60.000 0.00 0.00 0.00 4.26
1012 1021 1.153667 GCTCCGACCTCTCTTGCTG 60.154 63.158 0.00 0.00 0.00 4.41
1013 1022 1.304879 AGCTCCGACCTCTCTTGCT 60.305 57.895 0.00 0.00 0.00 3.91
1014 1023 1.153667 CAGCTCCGACCTCTCTTGC 60.154 63.158 0.00 0.00 0.00 4.01
1015 1024 0.967887 TCCAGCTCCGACCTCTCTTG 60.968 60.000 0.00 0.00 0.00 3.02
1016 1025 0.968393 GTCCAGCTCCGACCTCTCTT 60.968 60.000 0.00 0.00 0.00 2.85
1017 1026 1.379309 GTCCAGCTCCGACCTCTCT 60.379 63.158 0.00 0.00 0.00 3.10
1018 1027 2.419739 GGTCCAGCTCCGACCTCTC 61.420 68.421 18.52 0.00 45.41 3.20
1019 1028 2.363147 GGTCCAGCTCCGACCTCT 60.363 66.667 18.52 0.00 45.41 3.69
1048 1057 3.139469 GACGACGGTCTCCCCCTC 61.139 72.222 6.57 0.00 40.15 4.30
1049 1058 4.755507 GGACGACGGTCTCCCCCT 62.756 72.222 6.57 0.00 42.97 4.79
1083 1092 3.708220 CTGCGCCTCGAGGGTCTTC 62.708 68.421 32.06 14.37 37.43 2.87
1099 1108 4.803426 GTCGGCGAGGTGCTCCTG 62.803 72.222 11.20 6.01 45.24 3.86
1104 1113 4.203076 ATACCGTCGGCGAGGTGC 62.203 66.667 29.01 12.06 41.51 5.01
1105 1114 2.278596 CATACCGTCGGCGAGGTG 60.279 66.667 29.01 21.80 41.51 4.00
1106 1115 4.203076 GCATACCGTCGGCGAGGT 62.203 66.667 26.15 26.15 44.08 3.85
1108 1117 1.944676 GAAGCATACCGTCGGCGAG 60.945 63.158 12.93 3.10 41.33 5.03
1109 1118 2.103538 GAAGCATACCGTCGGCGA 59.896 61.111 12.93 4.99 41.33 5.54
1110 1119 2.960129 GGAAGCATACCGTCGGCG 60.960 66.667 12.28 0.29 37.95 6.46
1111 1120 1.883084 CAGGAAGCATACCGTCGGC 60.883 63.158 12.28 0.00 0.00 5.54
1113 1122 1.404391 AGTACAGGAAGCATACCGTCG 59.596 52.381 0.00 0.00 0.00 5.12
1114 1123 3.187700 CAAGTACAGGAAGCATACCGTC 58.812 50.000 0.00 0.00 0.00 4.79
1115 1124 2.677037 GCAAGTACAGGAAGCATACCGT 60.677 50.000 0.00 0.00 0.00 4.83
1116 1125 1.933853 GCAAGTACAGGAAGCATACCG 59.066 52.381 0.00 0.00 0.00 4.02
1142 1151 1.658095 GAAGTCACAGATCGCTCAAGC 59.342 52.381 0.00 0.00 37.78 4.01
1145 1154 1.203287 CCAGAAGTCACAGATCGCTCA 59.797 52.381 0.00 0.00 0.00 4.26
1146 1155 1.203523 ACCAGAAGTCACAGATCGCTC 59.796 52.381 0.00 0.00 0.00 5.03
1147 1156 1.261480 ACCAGAAGTCACAGATCGCT 58.739 50.000 0.00 0.00 0.00 4.93
1148 1157 2.164624 AGTACCAGAAGTCACAGATCGC 59.835 50.000 0.00 0.00 0.00 4.58
1149 1158 3.440522 TGAGTACCAGAAGTCACAGATCG 59.559 47.826 0.00 0.00 0.00 3.69
1150 1159 4.739195 GTGAGTACCAGAAGTCACAGATC 58.261 47.826 6.89 0.00 45.34 2.75
1151 1160 4.792521 GTGAGTACCAGAAGTCACAGAT 57.207 45.455 6.89 0.00 45.34 2.90
1155 1164 4.082679 CCAGTAGTGAGTACCAGAAGTCAC 60.083 50.000 0.00 4.08 46.03 3.67
1156 1165 4.079970 CCAGTAGTGAGTACCAGAAGTCA 58.920 47.826 0.00 0.00 31.06 3.41
1157 1166 3.119424 GCCAGTAGTGAGTACCAGAAGTC 60.119 52.174 0.00 0.00 31.06 3.01
1158 1167 2.826725 GCCAGTAGTGAGTACCAGAAGT 59.173 50.000 0.00 0.00 31.06 3.01
1159 1168 2.159366 CGCCAGTAGTGAGTACCAGAAG 60.159 54.545 0.00 0.00 31.06 2.85
1161 1170 1.271762 ACGCCAGTAGTGAGTACCAGA 60.272 52.381 0.00 0.00 31.06 3.86
1162 1171 1.174783 ACGCCAGTAGTGAGTACCAG 58.825 55.000 0.00 0.00 31.06 4.00
1163 1172 1.271379 CAACGCCAGTAGTGAGTACCA 59.729 52.381 0.00 0.00 31.06 3.25
1165 1174 2.719426 ACAACGCCAGTAGTGAGTAC 57.281 50.000 0.00 0.00 0.00 2.73
1166 1175 2.363038 ACAACAACGCCAGTAGTGAGTA 59.637 45.455 0.00 0.00 0.00 2.59
1167 1176 1.138266 ACAACAACGCCAGTAGTGAGT 59.862 47.619 0.00 0.00 0.00 3.41
1168 1177 1.526887 CACAACAACGCCAGTAGTGAG 59.473 52.381 0.00 0.00 0.00 3.51
1169 1178 1.134640 ACACAACAACGCCAGTAGTGA 60.135 47.619 0.00 0.00 0.00 3.41
1170 1179 1.295792 ACACAACAACGCCAGTAGTG 58.704 50.000 0.00 0.00 0.00 2.74
1172 1181 1.454276 CGTACACAACAACGCCAGTAG 59.546 52.381 0.00 0.00 31.66 2.57
1173 1182 1.489574 CGTACACAACAACGCCAGTA 58.510 50.000 0.00 0.00 31.66 2.74
1174 1183 2.303452 CGTACACAACAACGCCAGT 58.697 52.632 0.00 0.00 31.66 4.00
1179 1188 2.462203 CACAAATGCGTACACAACAACG 59.538 45.455 0.00 0.00 41.92 4.10
1180 1189 2.215363 GCACAAATGCGTACACAACAAC 59.785 45.455 0.00 0.00 43.33 3.32
1182 1191 2.112475 GCACAAATGCGTACACAACA 57.888 45.000 0.00 0.00 43.33 3.33
1214 1223 3.649277 CTTCCGAGTCTGCCCACCG 62.649 68.421 0.00 0.00 0.00 4.94
1216 1225 2.232298 CTCCTTCCGAGTCTGCCCAC 62.232 65.000 0.00 0.00 33.51 4.61
1217 1226 1.984570 CTCCTTCCGAGTCTGCCCA 60.985 63.158 0.00 0.00 33.51 5.36
1220 1229 1.153667 CTGCTCCTTCCGAGTCTGC 60.154 63.158 0.00 0.00 41.10 4.26
1221 1230 1.153667 GCTGCTCCTTCCGAGTCTG 60.154 63.158 0.00 0.00 41.10 3.51
1222 1231 1.304879 AGCTGCTCCTTCCGAGTCT 60.305 57.895 0.00 0.00 41.10 3.24
1223 1232 1.153667 CAGCTGCTCCTTCCGAGTC 60.154 63.158 0.00 0.00 41.10 3.36
1224 1233 2.654079 CCAGCTGCTCCTTCCGAGT 61.654 63.158 8.66 0.00 41.10 4.18
1225 1234 2.186384 CCAGCTGCTCCTTCCGAG 59.814 66.667 8.66 0.00 42.04 4.63
1226 1235 3.393970 CCCAGCTGCTCCTTCCGA 61.394 66.667 8.66 0.00 0.00 4.55
1227 1236 4.479993 CCCCAGCTGCTCCTTCCG 62.480 72.222 8.66 0.00 0.00 4.30
1229 1238 3.011517 TCCCCCAGCTGCTCCTTC 61.012 66.667 8.66 0.00 0.00 3.46
1233 1242 3.478274 CTCCTCCCCCAGCTGCTC 61.478 72.222 8.66 0.00 0.00 4.26
1238 1247 4.103928 TACCCCTCCTCCCCCAGC 62.104 72.222 0.00 0.00 0.00 4.85
1239 1248 2.040779 GTACCCCTCCTCCCCCAG 60.041 72.222 0.00 0.00 0.00 4.45
1240 1249 2.877383 TGTACCCCTCCTCCCCCA 60.877 66.667 0.00 0.00 0.00 4.96
1245 1254 0.468400 ATCTCGCTGTACCCCTCCTC 60.468 60.000 0.00 0.00 0.00 3.71
1246 1255 0.757188 CATCTCGCTGTACCCCTCCT 60.757 60.000 0.00 0.00 0.00 3.69
1248 1257 1.742768 CCATCTCGCTGTACCCCTC 59.257 63.158 0.00 0.00 0.00 4.30
1249 1258 1.762460 CCCATCTCGCTGTACCCCT 60.762 63.158 0.00 0.00 0.00 4.79
1252 1261 0.179108 GTGACCCATCTCGCTGTACC 60.179 60.000 0.00 0.00 0.00 3.34
1253 1262 0.530744 TGTGACCCATCTCGCTGTAC 59.469 55.000 0.00 0.00 0.00 2.90
1254 1263 1.204704 CTTGTGACCCATCTCGCTGTA 59.795 52.381 0.00 0.00 0.00 2.74
1255 1264 0.036952 CTTGTGACCCATCTCGCTGT 60.037 55.000 0.00 0.00 0.00 4.40
1257 1266 1.599047 CCTTGTGACCCATCTCGCT 59.401 57.895 0.00 0.00 0.00 4.93
1258 1267 1.450312 CCCTTGTGACCCATCTCGC 60.450 63.158 0.00 0.00 0.00 5.03
1259 1268 1.450312 GCCCTTGTGACCCATCTCG 60.450 63.158 0.00 0.00 0.00 4.04
1260 1269 1.450312 CGCCCTTGTGACCCATCTC 60.450 63.158 0.00 0.00 0.00 2.75
1261 1270 2.671070 CGCCCTTGTGACCCATCT 59.329 61.111 0.00 0.00 0.00 2.90
1262 1271 2.438434 CCGCCCTTGTGACCCATC 60.438 66.667 0.00 0.00 0.00 3.51
1263 1272 4.047125 CCCGCCCTTGTGACCCAT 62.047 66.667 0.00 0.00 0.00 4.00
1267 1276 3.319198 TCTCCCCGCCCTTGTGAC 61.319 66.667 0.00 0.00 0.00 3.67
1268 1277 3.319198 GTCTCCCCGCCCTTGTGA 61.319 66.667 0.00 0.00 0.00 3.58
1269 1278 3.316573 GAGTCTCCCCGCCCTTGTG 62.317 68.421 0.00 0.00 0.00 3.33
1270 1279 3.003763 GAGTCTCCCCGCCCTTGT 61.004 66.667 0.00 0.00 0.00 3.16
1271 1280 4.148825 CGAGTCTCCCCGCCCTTG 62.149 72.222 0.00 0.00 0.00 3.61
1276 1285 3.839432 CCTTCCGAGTCTCCCCGC 61.839 72.222 0.00 0.00 0.00 6.13
1277 1286 2.044252 TCCTTCCGAGTCTCCCCG 60.044 66.667 0.00 0.00 0.00 5.73
1281 1290 1.140804 GCTGCTCCTTCCGAGTCTC 59.859 63.158 0.00 0.00 41.10 3.36
1282 1291 1.304879 AGCTGCTCCTTCCGAGTCT 60.305 57.895 0.00 0.00 41.10 3.24
1283 1292 1.140804 GAGCTGCTCCTTCCGAGTC 59.859 63.158 18.80 0.00 41.10 3.36
1284 1293 2.705821 CGAGCTGCTCCTTCCGAGT 61.706 63.158 22.97 0.00 41.10 4.18
1285 1294 2.103934 CGAGCTGCTCCTTCCGAG 59.896 66.667 22.97 4.17 42.04 4.63
1286 1295 3.452786 CCGAGCTGCTCCTTCCGA 61.453 66.667 22.97 0.00 0.00 4.55
1287 1296 4.521062 CCCGAGCTGCTCCTTCCG 62.521 72.222 22.97 11.97 0.00 4.30
1288 1297 4.168291 CCCCGAGCTGCTCCTTCC 62.168 72.222 22.97 0.00 0.00 3.46
1289 1298 3.077556 TCCCCGAGCTGCTCCTTC 61.078 66.667 22.97 0.06 0.00 3.46
1313 1322 1.226888 GCGACCCATCTCACGGTAC 60.227 63.158 0.00 0.00 30.56 3.34
1314 1323 1.252215 TTGCGACCCATCTCACGGTA 61.252 55.000 0.00 0.00 30.56 4.02
1315 1324 2.507110 CTTGCGACCCATCTCACGGT 62.507 60.000 0.00 0.00 34.13 4.83
1317 1326 1.811266 CCTTGCGACCCATCTCACG 60.811 63.158 0.00 0.00 0.00 4.35
1318 1327 1.450312 CCCTTGCGACCCATCTCAC 60.450 63.158 0.00 0.00 0.00 3.51
1319 1328 1.612146 TCCCTTGCGACCCATCTCA 60.612 57.895 0.00 0.00 0.00 3.27
1320 1329 1.144936 CTCCCTTGCGACCCATCTC 59.855 63.158 0.00 0.00 0.00 2.75
1321 1330 2.370445 CCTCCCTTGCGACCCATCT 61.370 63.158 0.00 0.00 0.00 2.90
1322 1331 2.190578 CCTCCCTTGCGACCCATC 59.809 66.667 0.00 0.00 0.00 3.51
1323 1332 3.411517 CCCTCCCTTGCGACCCAT 61.412 66.667 0.00 0.00 0.00 4.00
1327 1336 2.683933 TCTCCCCTCCCTTGCGAC 60.684 66.667 0.00 0.00 0.00 5.19
1328 1337 2.683933 GTCTCCCCTCCCTTGCGA 60.684 66.667 0.00 0.00 0.00 5.10
1329 1338 2.685380 AGTCTCCCCTCCCTTGCG 60.685 66.667 0.00 0.00 0.00 4.85
1330 1339 2.726351 CGAGTCTCCCCTCCCTTGC 61.726 68.421 0.00 0.00 0.00 4.01
1331 1340 2.726351 GCGAGTCTCCCCTCCCTTG 61.726 68.421 0.00 0.00 0.00 3.61
1333 1342 3.239627 TTGCGAGTCTCCCCTCCCT 62.240 63.158 0.00 0.00 0.00 4.20
1336 1345 1.671901 CTCCTTGCGAGTCTCCCCTC 61.672 65.000 0.00 0.00 33.51 4.30
1337 1346 1.684049 CTCCTTGCGAGTCTCCCCT 60.684 63.158 0.00 0.00 33.51 4.79
1341 1350 1.809209 GCTGCTCCTTGCGAGTCTC 60.809 63.158 0.00 0.00 46.63 3.36
1342 1351 2.264166 GCTGCTCCTTGCGAGTCT 59.736 61.111 0.00 0.00 46.63 3.24
1343 1352 2.099431 CAGCTGCTCCTTGCGAGTC 61.099 63.158 0.00 0.00 46.63 3.36
1344 1353 2.047465 CAGCTGCTCCTTGCGAGT 60.047 61.111 0.00 0.00 46.63 4.18
1345 1354 2.818714 CCAGCTGCTCCTTGCGAG 60.819 66.667 8.66 0.00 46.63 5.03
1346 1355 4.399395 CCCAGCTGCTCCTTGCGA 62.399 66.667 8.66 0.00 46.63 5.10
1349 1358 3.333219 TCCCCCAGCTGCTCCTTG 61.333 66.667 8.66 0.00 0.00 3.61
1353 1362 3.478274 CTCCTCCCCCAGCTGCTC 61.478 72.222 8.66 0.00 0.00 4.26
1358 1367 4.103928 TACCCCTCCTCCCCCAGC 62.104 72.222 0.00 0.00 0.00 4.85
1359 1368 2.040779 GTACCCCTCCTCCCCCAG 60.041 72.222 0.00 0.00 0.00 4.45
1360 1369 3.702623 GGTACCCCTCCTCCCCCA 61.703 72.222 0.00 0.00 0.00 4.96
1365 1374 2.980105 ATCTCGCGGTACCCCTCCTC 62.980 65.000 6.13 0.00 0.00 3.71
1366 1375 3.070987 ATCTCGCGGTACCCCTCCT 62.071 63.158 6.13 0.00 0.00 3.69
1368 1377 2.728817 CATCTCGCGGTACCCCTC 59.271 66.667 6.13 0.00 0.00 4.30
1369 1378 2.838225 CCATCTCGCGGTACCCCT 60.838 66.667 6.13 0.00 0.00 4.79
1373 1382 3.845259 TGCCCCATCTCGCGGTAC 61.845 66.667 6.13 0.00 0.00 3.34
1374 1383 3.845259 GTGCCCCATCTCGCGGTA 61.845 66.667 6.13 0.00 0.00 4.02
1377 1386 3.197790 CTTGTGCCCCATCTCGCG 61.198 66.667 0.00 0.00 0.00 5.87
1378 1387 2.825836 CCTTGTGCCCCATCTCGC 60.826 66.667 0.00 0.00 0.00 5.03
1379 1388 2.124570 CCCTTGTGCCCCATCTCG 60.125 66.667 0.00 0.00 0.00 4.04
1380 1389 2.440980 GCCCTTGTGCCCCATCTC 60.441 66.667 0.00 0.00 0.00 2.75
1381 1390 4.431131 CGCCCTTGTGCCCCATCT 62.431 66.667 0.00 0.00 0.00 2.90
1502 1511 4.909678 TCGATCTCGATGCCCTCT 57.090 55.556 0.00 0.00 44.22 3.69
1690 1707 5.178061 CCTAAACTAGCACACATGATCACA 58.822 41.667 0.00 0.00 0.00 3.58
1705 1722 7.771927 ACTACAAGCTAAGACACCTAAACTA 57.228 36.000 0.00 0.00 0.00 2.24
1706 1723 6.667558 ACTACAAGCTAAGACACCTAAACT 57.332 37.500 0.00 0.00 0.00 2.66
1707 1724 7.541437 CACTACTACAAGCTAAGACACCTAAAC 59.459 40.741 0.00 0.00 0.00 2.01
1776 5113 2.110213 GACTCACGGGCCACAACA 59.890 61.111 4.39 0.00 0.00 3.33
1812 5149 3.719924 ACGACCTGATTTAACAACGACA 58.280 40.909 0.00 0.00 0.00 4.35
1847 5233 6.942532 AAGAGAACAATTTAAGAGCACACA 57.057 33.333 0.00 0.00 0.00 3.72
1871 5257 2.829120 GTTGTTCCTCTCTAGCCAGTCT 59.171 50.000 0.00 0.00 0.00 3.24
1902 5288 1.066716 CCATTTGTTCATGGGCCAGTG 60.067 52.381 13.78 10.85 40.29 3.66
1963 5349 0.179020 TGGGAAGCAACACCAGACTG 60.179 55.000 0.00 0.00 0.00 3.51
2000 5386 0.541764 GATTCCACAACAAGGCCCCA 60.542 55.000 0.00 0.00 0.00 4.96
2154 5731 2.762745 ACCGACACCAACATCAACTAC 58.237 47.619 0.00 0.00 0.00 2.73
2318 5947 6.960431 ACAAATTTTGAAAATGTTTGCAGTCG 59.040 30.769 15.81 0.00 34.12 4.18
2343 5972 8.372877 TGGAAAATTAAGGGAAAATAGCATGA 57.627 30.769 0.00 0.00 0.00 3.07
2380 6021 3.826157 TGGCCACGATTCAGAATTTTTCT 59.174 39.130 0.00 0.00 41.70 2.52
2381 6022 4.173036 TGGCCACGATTCAGAATTTTTC 57.827 40.909 0.00 0.00 0.00 2.29
2387 6029 2.715749 ATCATGGCCACGATTCAGAA 57.284 45.000 8.90 0.00 0.00 3.02
2398 6040 8.962884 AATTTATGTTTCCTAAAATCATGGCC 57.037 30.769 0.00 0.00 0.00 5.36
2433 6075 6.639632 AATGTTTATACTGATCACATGGCC 57.360 37.500 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.