Multiple sequence alignment - TraesCS1D01G225300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G225300 chr1D 100.000 9259 0 0 1 9259 313860699 313851441 0.000000e+00 17099.0
1 TraesCS1D01G225300 chr1D 83.271 269 33 9 8924 9190 17211544 17211802 4.320000e-58 237.0
2 TraesCS1D01G225300 chr1B 97.315 3091 70 7 2819 5901 423966324 423963239 0.000000e+00 5236.0
3 TraesCS1D01G225300 chr1B 94.420 2760 101 19 39 2764 423969077 423966337 0.000000e+00 4194.0
4 TraesCS1D01G225300 chr1B 96.525 1151 33 4 7486 8632 423961540 423960393 0.000000e+00 1897.0
5 TraesCS1D01G225300 chr1B 92.301 1104 42 18 5993 7061 423963240 423962145 0.000000e+00 1528.0
6 TraesCS1D01G225300 chr1B 97.442 430 9 2 7060 7487 423962063 423961634 0.000000e+00 732.0
7 TraesCS1D01G225300 chr1B 94.891 137 6 1 8662 8798 423960394 423960259 7.280000e-51 213.0
8 TraesCS1D01G225300 chr1B 94.286 70 4 0 9190 9259 423946116 423946047 3.540000e-19 108.0
9 TraesCS1D01G225300 chr1B 97.368 38 1 0 8895 8932 423946598 423946561 2.160000e-06 65.8
10 TraesCS1D01G225300 chr1A 96.938 3103 77 11 2812 5901 394258505 394255408 0.000000e+00 5188.0
11 TraesCS1D01G225300 chr1A 96.160 2995 80 25 5993 8960 394255409 394252423 0.000000e+00 4861.0
12 TraesCS1D01G225300 chr1A 95.489 2793 85 16 1 2764 394261293 394258513 0.000000e+00 4421.0
13 TraesCS1D01G225300 chr1A 86.174 311 28 12 8949 9259 394252382 394252087 1.160000e-83 322.0
14 TraesCS1D01G225300 chr2D 90.795 239 20 2 5779 6016 298287806 298287569 1.500000e-82 318.0
15 TraesCS1D01G225300 chr2D 87.645 259 28 3 5759 6017 305910562 305910816 1.950000e-76 298.0
16 TraesCS1D01G225300 chr7B 90.496 242 17 4 5778 6017 511302076 511301839 1.940000e-81 315.0
17 TraesCS1D01G225300 chr2B 90.377 239 21 2 5779 6016 363924529 363924766 6.980000e-81 313.0
18 TraesCS1D01G225300 chr2B 90.000 240 22 2 5779 6017 367687796 367688034 9.030000e-80 309.0
19 TraesCS1D01G225300 chr2B 86.364 242 30 3 8949 9190 88908023 88908261 2.560000e-65 261.0
20 TraesCS1D01G225300 chr4D 90.377 239 20 2 5779 6016 479956937 479957173 2.510000e-80 311.0
21 TraesCS1D01G225300 chr4D 85.448 268 35 4 8924 9190 85686186 85685922 9.160000e-70 276.0
22 TraesCS1D01G225300 chr2A 89.796 245 18 5 5775 6017 522501984 522502223 3.250000e-79 307.0
23 TraesCS1D01G225300 chr5B 88.703 239 24 3 8952 9190 491580180 491579945 1.180000e-73 289.0
24 TraesCS1D01G225300 chr3D 86.831 243 28 4 8949 9190 585436008 585436247 1.530000e-67 268.0
25 TraesCS1D01G225300 chr3D 86.831 243 28 4 8949 9190 585468766 585469005 1.530000e-67 268.0
26 TraesCS1D01G225300 chr3D 84.387 269 30 9 8924 9190 51045163 51045421 4.290000e-63 254.0
27 TraesCS1D01G225300 chr5D 84.015 269 31 9 8924 9190 327629103 327629361 2.000000e-61 248.0
28 TraesCS1D01G225300 chr6D 85.417 240 28 4 8951 9190 29373012 29372780 9.290000e-60 243.0
29 TraesCS1D01G225300 chr6D 89.516 124 11 2 4290 4413 269743826 269743947 1.240000e-33 156.0
30 TraesCS1D01G225300 chr3A 87.013 154 12 5 4326 4478 151641827 151641973 5.750000e-37 167.0
31 TraesCS1D01G225300 chr3B 88.189 127 11 3 4326 4451 194071679 194071802 2.080000e-31 148.0
32 TraesCS1D01G225300 chrUn 88.608 79 8 1 4300 4378 28410197 28410274 2.750000e-15 95.3
33 TraesCS1D01G225300 chr6B 86.441 59 8 0 4314 4372 41422734 41422676 2.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G225300 chr1D 313851441 313860699 9258 True 17099 17099 100.000000 1 9259 1 chr1D.!!$R1 9258
1 TraesCS1D01G225300 chr1B 423960259 423969077 8818 True 2300 5236 95.482333 39 8798 6 chr1B.!!$R2 8759
2 TraesCS1D01G225300 chr1A 394252087 394261293 9206 True 3698 5188 93.690250 1 9259 4 chr1A.!!$R1 9258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
917 937 2.165167 CTTCTTGGGCATTTGAGCTCA 58.835 47.619 13.74 13.74 44.78 4.26 F
1466 1495 0.733150 GGCAGCAAATACGGAACTCC 59.267 55.000 0.00 0.00 0.00 3.85 F
2334 2375 0.456221 ACTCAAGGACCGCGAGTATG 59.544 55.000 8.23 4.66 38.22 2.39 F
2594 2635 1.325476 GCCAGGGCAAGAATGGGAAG 61.325 60.000 5.20 0.00 41.49 3.46 F
3608 3649 1.070577 CAGGCGTGCGTCTATAAATGC 60.071 52.381 0.00 0.00 0.00 3.56 F
4413 4455 1.558233 AACCGGACAAAAACCAACCA 58.442 45.000 9.46 0.00 0.00 3.67 F
5084 5128 1.751927 CTGGGGGACAAGCTGCATC 60.752 63.158 1.02 0.00 0.00 3.91 F
6054 6107 0.456995 CACGTTGCACCGTTTTTGGT 60.457 50.000 6.54 0.00 45.21 3.67 F
7348 7537 1.231221 TTGTTAAACGCACGATGGCT 58.769 45.000 0.00 0.00 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2375 2.600470 GGTGCCAACCCCCTTGAC 60.600 66.667 0.00 0.00 41.04 3.18 R
3303 3344 3.228188 TGCCTGTTTGGAGATGACTTT 57.772 42.857 0.00 0.00 38.35 2.66 R
3501 3542 0.994247 TGCTTGTGATGATGGGGACT 59.006 50.000 0.00 0.00 0.00 3.85 R
3625 3666 1.005289 AGTGCCCATGATCTCCCCT 59.995 57.895 0.00 0.00 0.00 4.79 R
4943 4987 2.888212 TCAAGGCTACCCTGCAAAATT 58.112 42.857 0.00 0.00 41.90 1.82 R
5720 5772 0.773644 AGGCAAACCCACTCATGAGT 59.226 50.000 22.89 22.89 43.61 3.41 R
6591 6664 0.706729 GAAACAGGTTAGTCGACGCG 59.293 55.000 10.46 3.53 0.00 6.01 R
7437 7626 1.280421 GTGAAGCAGAATCTGGGTCCT 59.720 52.381 12.66 0.00 31.21 3.85 R
9125 9468 0.036732 CTTGGAGGTGCTGCTTGGTA 59.963 55.000 0.00 0.00 0.00 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.691860 TTGTAGCTACCACGAGACTTAC 57.308 45.455 21.01 0.00 0.00 2.34
30 31 3.678289 TGTAGCTACCACGAGACTTACA 58.322 45.455 21.01 0.00 0.00 2.41
65 66 2.361104 GGCAACCGAGAATGGCCA 60.361 61.111 8.56 8.56 44.01 5.36
121 122 6.058183 AGTAGTTCTCAGTGCTTCATTTTGT 58.942 36.000 0.00 0.00 0.00 2.83
223 224 4.542697 AGCTCCAAGAACTTTGGGTAAAA 58.457 39.130 6.13 0.00 39.96 1.52
234 235 2.922740 TGGGTAAAAGTCGCTCTGTT 57.077 45.000 0.00 0.00 0.00 3.16
293 294 3.554934 TGCTGATTGTCAAGTGGTCTTT 58.445 40.909 0.00 0.00 0.00 2.52
315 316 3.130516 TGGTTTGTACTAGAGCTCATCCG 59.869 47.826 17.77 3.28 0.00 4.18
347 348 3.791973 AGTATCTCTGTCGAGCTTTGG 57.208 47.619 0.00 0.00 37.19 3.28
366 386 2.290008 TGGTCTGTGCATGATTAACCGT 60.290 45.455 0.00 0.00 0.00 4.83
387 407 6.661805 ACCGTATTTGGGATTTGACAACTAAT 59.338 34.615 0.00 0.00 0.00 1.73
435 455 8.633075 ACAAACAAATTTTGTGTCTCATAGTG 57.367 30.769 15.17 5.86 44.59 2.74
440 460 7.040686 ACAAATTTTGTGTCTCATAGTGTACCC 60.041 37.037 13.80 0.00 43.48 3.69
441 461 4.546829 TTTGTGTCTCATAGTGTACCCC 57.453 45.455 0.00 0.00 0.00 4.95
442 462 3.178412 TGTGTCTCATAGTGTACCCCA 57.822 47.619 0.00 0.00 0.00 4.96
443 463 3.512496 TGTGTCTCATAGTGTACCCCAA 58.488 45.455 0.00 0.00 0.00 4.12
444 464 3.513912 TGTGTCTCATAGTGTACCCCAAG 59.486 47.826 0.00 0.00 0.00 3.61
445 465 3.767673 GTGTCTCATAGTGTACCCCAAGA 59.232 47.826 0.00 0.00 0.00 3.02
446 466 4.023980 TGTCTCATAGTGTACCCCAAGAG 58.976 47.826 0.00 0.00 0.00 2.85
447 467 3.385111 GTCTCATAGTGTACCCCAAGAGG 59.615 52.174 0.00 0.00 0.00 3.69
527 547 4.891627 TGGGACACGTTGCATATAATTG 57.108 40.909 0.00 0.00 0.00 2.32
531 551 4.514506 GACACGTTGCATATAATTGGACG 58.485 43.478 0.59 0.59 0.00 4.79
642 662 3.866910 ACGCAGAAAGTTTCTTTACACGA 59.133 39.130 15.60 0.00 38.11 4.35
644 664 4.898488 CGCAGAAAGTTTCTTTACACGAAG 59.102 41.667 15.60 2.76 38.11 3.79
653 673 8.937634 AGTTTCTTTACACGAAGAGAAGTTTA 57.062 30.769 0.00 0.00 37.01 2.01
754 774 5.237779 TCCATTAAGGTCGTGTGTTTTCTTC 59.762 40.000 0.00 0.00 39.02 2.87
917 937 2.165167 CTTCTTGGGCATTTGAGCTCA 58.835 47.619 13.74 13.74 44.78 4.26
1104 1124 3.416156 GTCTGCTTCATTGGAAAGGTCT 58.584 45.455 0.00 0.00 31.35 3.85
1174 1194 1.467734 GCTCAACAAGATCACCAGCAG 59.532 52.381 0.00 0.00 0.00 4.24
1438 1467 7.118971 GCTGTCTTGTCAGATGAACTAAGAATT 59.881 37.037 6.89 0.00 37.61 2.17
1466 1495 0.733150 GGCAGCAAATACGGAACTCC 59.267 55.000 0.00 0.00 0.00 3.85
1913 1945 1.639298 CGGAGGTTGTAGCTTGCAGC 61.639 60.000 0.00 0.00 42.84 5.25
1926 1958 2.476241 GCTTGCAGCGCTAAATTTTGTT 59.524 40.909 10.99 0.00 0.00 2.83
1934 1966 6.143919 GCAGCGCTAAATTTTGTTTAACTCTT 59.856 34.615 10.99 0.00 0.00 2.85
1958 1990 6.046593 TCGCTTGTCACTTCTTTTCTTCTAA 58.953 36.000 0.00 0.00 0.00 2.10
1992 2024 9.550406 TTTAATAACTAGTTGCTACAGTGTTGT 57.450 29.630 18.56 0.00 41.39 3.32
2036 2068 2.359848 TGTGTTGCTACTCAGTGTACGT 59.640 45.455 0.00 0.00 0.00 3.57
2039 2071 2.699251 TGCTACTCAGTGTACGTGTG 57.301 50.000 0.00 0.00 0.00 3.82
2041 2073 1.268899 GCTACTCAGTGTACGTGTGGT 59.731 52.381 0.00 0.00 0.00 4.16
2173 2213 5.903764 TTTGTCATTGTTAACTTGCATGC 57.096 34.783 11.82 11.82 0.00 4.06
2291 2332 7.910162 CCATTGTTCTCTTAATTGATAACACGG 59.090 37.037 0.00 0.00 34.37 4.94
2334 2375 0.456221 ACTCAAGGACCGCGAGTATG 59.544 55.000 8.23 4.66 38.22 2.39
2396 2437 3.892588 GGGAAAGTTACAAATGGTGGTCA 59.107 43.478 0.00 0.00 0.00 4.02
2405 2446 2.624838 CAAATGGTGGTCAAGCAGTTCT 59.375 45.455 0.00 0.00 42.25 3.01
2502 2543 3.067742 CCATCAAGGCAGATGTTTCATCC 59.932 47.826 15.70 0.00 43.00 3.51
2594 2635 1.325476 GCCAGGGCAAGAATGGGAAG 61.325 60.000 5.20 0.00 41.49 3.46
2764 2805 3.848975 AGGAAGTCCTTCTCATGACCATT 59.151 43.478 6.97 0.00 46.09 3.16
2765 2806 4.290722 AGGAAGTCCTTCTCATGACCATTT 59.709 41.667 6.97 0.00 46.09 2.32
2766 2807 4.397417 GGAAGTCCTTCTCATGACCATTTG 59.603 45.833 6.97 0.00 39.45 2.32
2767 2808 4.916041 AGTCCTTCTCATGACCATTTGA 57.084 40.909 0.00 0.00 31.76 2.69
2770 2811 4.761739 GTCCTTCTCATGACCATTTGACAA 59.238 41.667 0.00 0.00 0.00 3.18
2771 2812 5.416952 GTCCTTCTCATGACCATTTGACAAT 59.583 40.000 0.00 0.00 0.00 2.71
2774 2815 7.669304 TCCTTCTCATGACCATTTGACAATTTA 59.331 33.333 0.00 0.00 0.00 1.40
2775 2816 8.306038 CCTTCTCATGACCATTTGACAATTTAA 58.694 33.333 0.00 0.00 0.00 1.52
2776 2817 9.865321 CTTCTCATGACCATTTGACAATTTAAT 57.135 29.630 0.00 0.00 0.00 1.40
2777 2818 9.859427 TTCTCATGACCATTTGACAATTTAATC 57.141 29.630 0.00 0.00 0.00 1.75
2778 2819 9.022884 TCTCATGACCATTTGACAATTTAATCA 57.977 29.630 0.00 0.00 0.00 2.57
2779 2820 9.297586 CTCATGACCATTTGACAATTTAATCAG 57.702 33.333 0.00 0.00 0.00 2.90
2780 2821 7.760794 TCATGACCATTTGACAATTTAATCAGC 59.239 33.333 0.00 0.00 0.00 4.26
2781 2822 6.990798 TGACCATTTGACAATTTAATCAGCA 58.009 32.000 0.00 0.00 0.00 4.41
2782 2823 7.613585 TGACCATTTGACAATTTAATCAGCAT 58.386 30.769 0.00 0.00 0.00 3.79
2783 2824 7.760794 TGACCATTTGACAATTTAATCAGCATC 59.239 33.333 0.00 0.00 0.00 3.91
2784 2825 7.844009 ACCATTTGACAATTTAATCAGCATCT 58.156 30.769 0.00 0.00 0.00 2.90
2785 2826 8.316214 ACCATTTGACAATTTAATCAGCATCTT 58.684 29.630 0.00 0.00 0.00 2.40
2786 2827 9.158233 CCATTTGACAATTTAATCAGCATCTTT 57.842 29.630 0.00 0.00 0.00 2.52
2789 2830 9.985730 TTTGACAATTTAATCAGCATCTTTCTT 57.014 25.926 0.00 0.00 0.00 2.52
2790 2831 9.630098 TTGACAATTTAATCAGCATCTTTCTTC 57.370 29.630 0.00 0.00 0.00 2.87
2791 2832 9.017509 TGACAATTTAATCAGCATCTTTCTTCT 57.982 29.630 0.00 0.00 0.00 2.85
2792 2833 9.852091 GACAATTTAATCAGCATCTTTCTTCTT 57.148 29.630 0.00 0.00 0.00 2.52
2793 2834 9.852091 ACAATTTAATCAGCATCTTTCTTCTTC 57.148 29.630 0.00 0.00 0.00 2.87
2797 2838 9.512588 TTTAATCAGCATCTTTCTTCTTCTTCT 57.487 29.630 0.00 0.00 0.00 2.85
2798 2839 7.999450 AATCAGCATCTTTCTTCTTCTTCTT 57.001 32.000 0.00 0.00 0.00 2.52
2799 2840 7.614124 ATCAGCATCTTTCTTCTTCTTCTTC 57.386 36.000 0.00 0.00 0.00 2.87
2800 2841 6.767456 TCAGCATCTTTCTTCTTCTTCTTCT 58.233 36.000 0.00 0.00 0.00 2.85
2801 2842 7.222872 TCAGCATCTTTCTTCTTCTTCTTCTT 58.777 34.615 0.00 0.00 0.00 2.52
2802 2843 7.387397 TCAGCATCTTTCTTCTTCTTCTTCTTC 59.613 37.037 0.00 0.00 0.00 2.87
2803 2844 7.388500 CAGCATCTTTCTTCTTCTTCTTCTTCT 59.612 37.037 0.00 0.00 0.00 2.85
2804 2845 7.938490 AGCATCTTTCTTCTTCTTCTTCTTCTT 59.062 33.333 0.00 0.00 0.00 2.52
2805 2846 8.229811 GCATCTTTCTTCTTCTTCTTCTTCTTC 58.770 37.037 0.00 0.00 0.00 2.87
2806 2847 9.492973 CATCTTTCTTCTTCTTCTTCTTCTTCT 57.507 33.333 0.00 0.00 0.00 2.85
2808 2849 9.541143 TCTTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2809 2850 9.546428 CTTTCTTCTTCTTCTTCTTCTTCTTCT 57.454 33.333 0.00 0.00 0.00 2.85
2810 2851 9.898152 TTTCTTCTTCTTCTTCTTCTTCTTCTT 57.102 29.630 0.00 0.00 0.00 2.52
2811 2852 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2812 2853 8.923270 TCTTCTTCTTCTTCTTCTTCTTCTTCT 58.077 33.333 0.00 0.00 0.00 2.85
2813 2854 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2814 2855 9.541143 TTCTTCTTCTTCTTCTTCTTCTTCTTC 57.459 33.333 0.00 0.00 0.00 2.87
2886 2927 1.610102 GCTGTTGCATCTGTCTCTGGT 60.610 52.381 0.00 0.00 39.41 4.00
2898 2939 2.230508 TGTCTCTGGTACTGGTAAAGCG 59.769 50.000 0.00 0.00 0.00 4.68
2905 2946 2.289257 GGTACTGGTAAAGCGGACTTGT 60.289 50.000 0.00 0.00 35.85 3.16
3006 3047 5.805728 AGGGATCGACAACTTGTTTTAGAT 58.194 37.500 0.00 0.34 0.00 1.98
3211 3252 7.895870 CATCTGATGCATTGAATTTTTCAGAC 58.104 34.615 11.84 0.00 40.42 3.51
3303 3344 6.765989 CCCGATCAAACTCTGGTTCATTATTA 59.234 38.462 0.00 0.00 34.14 0.98
3500 3541 3.499918 CGTTCAGCAAGGAAGTCAAATCT 59.500 43.478 0.00 0.00 0.00 2.40
3501 3542 4.690748 CGTTCAGCAAGGAAGTCAAATCTA 59.309 41.667 0.00 0.00 0.00 1.98
3502 3543 5.163913 CGTTCAGCAAGGAAGTCAAATCTAG 60.164 44.000 0.00 0.00 0.00 2.43
3579 3620 4.514441 CCATCTATCAGTGAACAATCTGCC 59.486 45.833 0.00 0.00 0.00 4.85
3608 3649 1.070577 CAGGCGTGCGTCTATAAATGC 60.071 52.381 0.00 0.00 0.00 3.56
3807 3848 5.762825 TTTCTGCTGATGAAGATATTGGC 57.237 39.130 0.00 0.00 0.00 4.52
3933 3974 5.128827 ACAAAGAAGTGTAAGGACAGTCTCA 59.871 40.000 0.00 0.00 38.33 3.27
3942 3983 4.864704 AAGGACAGTCTCAGAGAGAAAC 57.135 45.455 0.00 0.00 40.59 2.78
3954 3995 4.524714 TCAGAGAGAAACGAAAGGTGAGAT 59.475 41.667 0.00 0.00 0.00 2.75
4008 4050 6.943146 AGATACGGCTCAGAGATATTCTTACA 59.057 38.462 0.00 0.00 32.41 2.41
4053 4095 6.433847 TCTGGAAGACCACTGATAAAGAAA 57.566 37.500 0.00 0.00 38.67 2.52
4125 4167 2.772691 GGCGGACTCTCCTGGTACG 61.773 68.421 0.00 0.00 43.13 3.67
4191 4233 3.248363 TCTTTCATTCTGCTGACGTTGTG 59.752 43.478 0.00 0.00 0.00 3.33
4301 4343 7.970614 CCTTAAAGTCCAGCATTTATCTTTGAC 59.029 37.037 0.00 0.00 0.00 3.18
4321 4363 5.741011 TGACAGAAGTCCATATTACAACCC 58.259 41.667 0.00 0.00 44.33 4.11
4412 4454 2.673862 CAAAACCGGACAAAAACCAACC 59.326 45.455 9.46 0.00 0.00 3.77
4413 4455 1.558233 AACCGGACAAAAACCAACCA 58.442 45.000 9.46 0.00 0.00 3.67
4454 4497 5.944013 TCAACACAGTTTTGACGATTTTGA 58.056 33.333 0.00 0.00 0.00 2.69
4943 4987 8.991026 CCAGTCAATTTATGCTGAAATTTTTCA 58.009 29.630 5.67 5.67 44.31 2.69
5084 5128 1.751927 CTGGGGGACAAGCTGCATC 60.752 63.158 1.02 0.00 0.00 3.91
5203 5247 2.209273 TGATGATATTGCCAACGACGG 58.791 47.619 0.00 0.00 0.00 4.79
5381 5425 6.348950 GGAAATACAATGATGAACCGTCACAA 60.349 38.462 0.00 0.00 36.31 3.33
5555 5599 9.100895 CATTTTATGCAATTTGTTTTGGTTACG 57.899 29.630 0.00 0.00 0.00 3.18
5604 5648 3.225940 TCCCATGTGCATTTTGTACACA 58.774 40.909 0.00 0.00 45.24 3.72
5658 5702 7.689400 GCTTATTTTCAATCCATTTCTTTTGCG 59.311 33.333 0.00 0.00 0.00 4.85
5720 5772 7.202016 GTTGACAACCATTGAAGTTAGATCA 57.798 36.000 7.10 0.00 0.00 2.92
5746 5798 2.375174 TGAGTGGGTTTGCCTAATCTGT 59.625 45.455 0.00 0.00 40.37 3.41
5823 5875 0.693049 AGCCCTTTCCATCAGTTCGT 59.307 50.000 0.00 0.00 0.00 3.85
5853 5905 2.153645 TGTGTTGGCTAGTGCATGAAG 58.846 47.619 0.00 0.00 41.91 3.02
5860 5912 2.030946 GGCTAGTGCATGAAGCTTAACG 59.969 50.000 14.92 0.00 45.94 3.18
5901 5954 3.228188 TGAGTTCATGTCCAGGCTTTT 57.772 42.857 0.00 0.00 0.00 2.27
5902 5955 2.886523 TGAGTTCATGTCCAGGCTTTTG 59.113 45.455 0.00 0.00 0.00 2.44
5903 5956 1.615392 AGTTCATGTCCAGGCTTTTGC 59.385 47.619 0.00 0.00 46.64 3.68
5931 5984 1.376086 AAAAATTGCTGCTGCCCCC 59.624 52.632 13.47 0.00 38.71 5.40
5945 5998 2.923035 CCCCCTCTGTGTCCACGT 60.923 66.667 0.00 0.00 0.00 4.49
5946 5999 1.608336 CCCCCTCTGTGTCCACGTA 60.608 63.158 0.00 0.00 0.00 3.57
5947 6000 0.976073 CCCCCTCTGTGTCCACGTAT 60.976 60.000 0.00 0.00 0.00 3.06
5948 6001 1.687054 CCCCCTCTGTGTCCACGTATA 60.687 57.143 0.00 0.00 0.00 1.47
5949 6002 1.681793 CCCCTCTGTGTCCACGTATAG 59.318 57.143 0.00 0.00 0.00 1.31
5950 6003 1.681793 CCCTCTGTGTCCACGTATAGG 59.318 57.143 0.00 0.00 0.00 2.57
5951 6004 1.067212 CCTCTGTGTCCACGTATAGGC 59.933 57.143 0.00 0.00 0.00 3.93
5952 6005 1.067212 CTCTGTGTCCACGTATAGGCC 59.933 57.143 0.00 0.00 0.00 5.19
5953 6006 1.112113 CTGTGTCCACGTATAGGCCT 58.888 55.000 11.78 11.78 0.00 5.19
5954 6007 1.067212 CTGTGTCCACGTATAGGCCTC 59.933 57.143 9.68 0.00 0.00 4.70
5955 6008 1.341679 TGTGTCCACGTATAGGCCTCT 60.342 52.381 9.68 0.46 0.00 3.69
5956 6009 1.067212 GTGTCCACGTATAGGCCTCTG 59.933 57.143 9.68 0.00 0.00 3.35
5957 6010 1.341679 TGTCCACGTATAGGCCTCTGT 60.342 52.381 9.68 0.00 0.00 3.41
5958 6011 2.092267 TGTCCACGTATAGGCCTCTGTA 60.092 50.000 9.68 0.00 0.00 2.74
5959 6012 2.553172 GTCCACGTATAGGCCTCTGTAG 59.447 54.545 9.68 0.27 0.00 2.74
5960 6013 1.269998 CCACGTATAGGCCTCTGTAGC 59.730 57.143 9.68 0.00 0.00 3.58
5969 6022 1.710816 GCCTCTGTAGCCATACCTCT 58.289 55.000 0.00 0.00 0.00 3.69
5970 6023 2.043227 GCCTCTGTAGCCATACCTCTT 58.957 52.381 0.00 0.00 0.00 2.85
5971 6024 2.436173 GCCTCTGTAGCCATACCTCTTT 59.564 50.000 0.00 0.00 0.00 2.52
5972 6025 3.742640 GCCTCTGTAGCCATACCTCTTTG 60.743 52.174 0.00 0.00 0.00 2.77
5973 6026 3.706594 CCTCTGTAGCCATACCTCTTTGA 59.293 47.826 0.00 0.00 0.00 2.69
5974 6027 4.202202 CCTCTGTAGCCATACCTCTTTGAG 60.202 50.000 0.00 0.00 0.00 3.02
5975 6028 4.353777 TCTGTAGCCATACCTCTTTGAGT 58.646 43.478 0.00 0.00 0.00 3.41
5976 6029 4.402793 TCTGTAGCCATACCTCTTTGAGTC 59.597 45.833 0.00 0.00 0.00 3.36
5977 6030 4.353777 TGTAGCCATACCTCTTTGAGTCT 58.646 43.478 0.00 0.00 0.00 3.24
5978 6031 5.516044 TGTAGCCATACCTCTTTGAGTCTA 58.484 41.667 0.00 0.00 0.00 2.59
5979 6032 6.136857 TGTAGCCATACCTCTTTGAGTCTAT 58.863 40.000 0.00 0.00 0.00 1.98
5980 6033 6.611642 TGTAGCCATACCTCTTTGAGTCTATT 59.388 38.462 0.00 0.00 0.00 1.73
5981 6034 6.168270 AGCCATACCTCTTTGAGTCTATTC 57.832 41.667 0.00 0.00 0.00 1.75
5982 6035 5.663106 AGCCATACCTCTTTGAGTCTATTCA 59.337 40.000 0.00 0.00 0.00 2.57
5983 6036 5.755861 GCCATACCTCTTTGAGTCTATTCAC 59.244 44.000 0.00 0.00 0.00 3.18
5984 6037 5.980116 CCATACCTCTTTGAGTCTATTCACG 59.020 44.000 0.00 0.00 0.00 4.35
5985 6038 6.405953 CCATACCTCTTTGAGTCTATTCACGT 60.406 42.308 0.00 0.00 0.00 4.49
5986 6039 4.810790 ACCTCTTTGAGTCTATTCACGTG 58.189 43.478 9.94 9.94 0.00 4.49
5987 6040 4.281182 ACCTCTTTGAGTCTATTCACGTGT 59.719 41.667 16.51 0.00 0.00 4.49
5988 6041 5.221461 ACCTCTTTGAGTCTATTCACGTGTT 60.221 40.000 16.51 7.21 0.00 3.32
5989 6042 5.119279 CCTCTTTGAGTCTATTCACGTGTTG 59.881 44.000 16.51 4.62 0.00 3.33
5990 6043 5.838529 TCTTTGAGTCTATTCACGTGTTGA 58.161 37.500 16.51 6.92 0.00 3.18
5991 6044 5.690409 TCTTTGAGTCTATTCACGTGTTGAC 59.310 40.000 16.51 17.37 32.26 3.18
5992 6045 4.848562 TGAGTCTATTCACGTGTTGACT 57.151 40.909 23.62 23.62 37.46 3.41
5993 6046 5.196341 TGAGTCTATTCACGTGTTGACTT 57.804 39.130 23.94 14.63 35.29 3.01
6054 6107 0.456995 CACGTTGCACCGTTTTTGGT 60.457 50.000 6.54 0.00 45.21 3.67
6109 6162 5.809562 CCTAGTTCAGAAGTCACTGCATTAG 59.190 44.000 0.00 0.00 37.75 1.73
6174 6228 9.403583 CTTATTTAGTAGGGGCTATGTTTTTCA 57.596 33.333 0.00 0.00 0.00 2.69
6222 6276 7.333423 GTGAAGAGTATTTTATGCTACACACCA 59.667 37.037 0.00 0.00 0.00 4.17
6232 6286 8.671384 TTTATGCTACACACCAAATATACCTC 57.329 34.615 0.00 0.00 0.00 3.85
6238 6292 2.158813 ACACCAAATATACCTCCAGCCG 60.159 50.000 0.00 0.00 0.00 5.52
6483 6556 2.375174 TGTTCTGTTACCATTCCAGCCT 59.625 45.455 0.00 0.00 0.00 4.58
6588 6661 6.726258 AATCACTATACATGTGTGTGTGTG 57.274 37.500 20.80 15.96 39.39 3.82
6589 6662 5.208463 TCACTATACATGTGTGTGTGTGT 57.792 39.130 20.80 4.69 39.39 3.72
6590 6663 4.987912 TCACTATACATGTGTGTGTGTGTG 59.012 41.667 20.80 13.22 39.39 3.82
6591 6664 3.745975 ACTATACATGTGTGTGTGTGTGC 59.254 43.478 9.11 0.00 39.39 4.57
6598 6671 4.856607 TGTGTGTGTGCGCGTCGA 62.857 61.111 8.43 0.00 0.00 4.20
6648 6721 5.357878 TCATTGGCTCATTCCTTCAACATAC 59.642 40.000 0.00 0.00 0.00 2.39
6832 6926 1.394266 TATCTACACGGTTCGGCCCC 61.394 60.000 0.00 0.00 0.00 5.80
6876 6971 2.011046 GCCATGGAGAGACTTGTGCTC 61.011 57.143 18.40 0.00 0.00 4.26
7089 7275 8.417780 TTGAAGGTTTTGTGTTGATGTTATTG 57.582 30.769 0.00 0.00 0.00 1.90
7142 7328 7.945033 TTTGTTTTCTCATACCAAGCATTTC 57.055 32.000 0.00 0.00 0.00 2.17
7184 7370 4.039124 CCTTGGTTGCTTTGTTTACCTCAT 59.961 41.667 0.00 0.00 0.00 2.90
7348 7537 1.231221 TTGTTAAACGCACGATGGCT 58.769 45.000 0.00 0.00 0.00 4.75
7437 7626 7.977789 TTATATCAGCAACTTCACACAGAAA 57.022 32.000 0.00 0.00 35.40 2.52
7571 7855 5.813717 TCGTGTATACCGAATACTGTTCTG 58.186 41.667 12.23 0.00 41.05 3.02
7667 7951 3.776969 TCCAAAGGTCTAGTGCATCAGAT 59.223 43.478 3.81 0.00 0.00 2.90
7903 8187 3.296709 GACCGCCATCGTCCAGTGT 62.297 63.158 0.00 0.00 0.00 3.55
8077 8361 1.616374 TGCCACTAGACGTGATGAACA 59.384 47.619 0.00 0.00 46.81 3.18
8093 8377 0.033366 AACAGGCAAATCCCGCAAAC 59.967 50.000 0.00 0.00 34.51 2.93
8114 8398 3.935203 ACGATGCTGAAATACCAGACTTG 59.065 43.478 0.00 0.00 36.29 3.16
8364 8649 1.478837 CCGGATAGTCTCCAGGTAGCA 60.479 57.143 0.00 0.00 45.24 3.49
8409 8698 0.335361 TAGAGACCTCACACCCCTCC 59.665 60.000 0.00 0.00 0.00 4.30
8522 8811 3.056328 GGAGGCCGGTTGCTTGAC 61.056 66.667 1.90 0.00 40.92 3.18
8529 8818 1.878953 CCGGTTGCTTGACTGTACTT 58.121 50.000 0.00 0.00 0.00 2.24
8593 8882 3.451526 GGCGTCGGTTATAGCTTTACTT 58.548 45.455 0.00 0.00 0.00 2.24
8769 9059 1.883084 CCGTCTCGTTATGCCAGCC 60.883 63.158 0.00 0.00 0.00 4.85
8787 9077 3.257935 CCAATTGCGGGACCAAGTA 57.742 52.632 0.00 0.00 0.00 2.24
8804 9094 8.237267 GGACCAAGTACTATGAACTTCAAATTG 58.763 37.037 0.00 0.00 34.99 2.32
8807 9097 7.965107 CCAAGTACTATGAACTTCAAATTGAGC 59.035 37.037 0.00 0.00 34.99 4.26
8944 9234 5.747565 TGCCGCTTTGATTATAAAAGATCG 58.252 37.500 6.24 1.52 36.88 3.69
8945 9235 5.147162 GCCGCTTTGATTATAAAAGATCGG 58.853 41.667 13.39 13.39 40.38 4.18
8967 9310 4.997395 GGATACCGATCACATAGCAATTGT 59.003 41.667 7.40 0.00 33.27 2.71
8969 9312 4.621068 ACCGATCACATAGCAATTGTTG 57.379 40.909 7.40 5.57 0.00 3.33
8970 9313 4.009675 ACCGATCACATAGCAATTGTTGT 58.990 39.130 7.40 6.19 0.00 3.32
9010 9353 7.446931 ACAAGCCCAAAAGAAAAGAAAAAGAAA 59.553 29.630 0.00 0.00 0.00 2.52
9011 9354 7.994425 AGCCCAAAAGAAAAGAAAAAGAAAA 57.006 28.000 0.00 0.00 0.00 2.29
9040 9383 5.916318 AGAAGAAACAAATGCCAACAATGA 58.084 33.333 0.00 0.00 0.00 2.57
9046 9389 3.181463 ACAAATGCCAACAATGACAGCTT 60.181 39.130 0.00 0.00 0.00 3.74
9089 9432 4.845580 CGCTGCGCCCTCCAGAAT 62.846 66.667 9.88 0.00 32.03 2.40
9090 9433 2.899339 GCTGCGCCCTCCAGAATC 60.899 66.667 4.18 0.00 32.03 2.52
9091 9434 2.587194 CTGCGCCCTCCAGAATCG 60.587 66.667 4.18 0.00 32.03 3.34
9092 9435 3.074369 TGCGCCCTCCAGAATCGA 61.074 61.111 4.18 0.00 0.00 3.59
9093 9436 2.586357 GCGCCCTCCAGAATCGAC 60.586 66.667 0.00 0.00 0.00 4.20
9096 9439 2.367202 GCCCTCCAGAATCGACCCA 61.367 63.158 0.00 0.00 0.00 4.51
9097 9440 1.826024 CCCTCCAGAATCGACCCAG 59.174 63.158 0.00 0.00 0.00 4.45
9099 9442 1.617018 CCTCCAGAATCGACCCAGCA 61.617 60.000 0.00 0.00 0.00 4.41
9101 9444 1.191489 TCCAGAATCGACCCAGCACA 61.191 55.000 0.00 0.00 0.00 4.57
9102 9445 0.742281 CCAGAATCGACCCAGCACAG 60.742 60.000 0.00 0.00 0.00 3.66
9104 9447 1.134580 CAGAATCGACCCAGCACAGAT 60.135 52.381 0.00 0.00 0.00 2.90
9105 9448 1.137872 AGAATCGACCCAGCACAGATC 59.862 52.381 0.00 0.00 0.00 2.75
9108 9451 0.247460 TCGACCCAGCACAGATCAAG 59.753 55.000 0.00 0.00 0.00 3.02
9109 9452 0.742281 CGACCCAGCACAGATCAAGG 60.742 60.000 0.00 0.00 0.00 3.61
9110 9453 1.001641 ACCCAGCACAGATCAAGGC 60.002 57.895 0.00 0.00 0.00 4.35
9111 9454 1.302285 CCCAGCACAGATCAAGGCT 59.698 57.895 0.00 0.00 36.99 4.58
9112 9455 0.747283 CCCAGCACAGATCAAGGCTC 60.747 60.000 0.00 0.00 33.60 4.70
9113 9456 0.747283 CCAGCACAGATCAAGGCTCC 60.747 60.000 0.00 0.00 33.60 4.70
9114 9457 1.088340 CAGCACAGATCAAGGCTCCG 61.088 60.000 0.00 0.00 33.60 4.63
9115 9458 1.219124 GCACAGATCAAGGCTCCGA 59.781 57.895 0.00 0.00 0.00 4.55
9116 9459 0.179062 GCACAGATCAAGGCTCCGAT 60.179 55.000 0.00 0.00 0.00 4.18
9117 9460 1.863267 CACAGATCAAGGCTCCGATC 58.137 55.000 15.56 15.56 38.66 3.69
9118 9461 0.755686 ACAGATCAAGGCTCCGATCC 59.244 55.000 18.32 6.01 39.09 3.36
9119 9462 0.319383 CAGATCAAGGCTCCGATCCG 60.319 60.000 18.32 8.76 39.09 4.18
9120 9463 0.757188 AGATCAAGGCTCCGATCCGT 60.757 55.000 18.32 3.93 39.09 4.69
9121 9464 0.319125 GATCAAGGCTCCGATCCGTC 60.319 60.000 13.34 0.00 33.37 4.79
9123 9466 4.208686 AAGGCTCCGATCCGTCGC 62.209 66.667 0.00 0.00 46.32 5.19
9134 9477 2.884087 ATCCGTCGCGTACCAAGCAG 62.884 60.000 5.77 0.00 34.19 4.24
9147 9490 0.879765 CAAGCAGCACCTCCAAGAAG 59.120 55.000 0.00 0.00 0.00 2.85
9170 9513 4.505217 CAACGCCGACGATGCTGC 62.505 66.667 0.00 0.00 43.93 5.25
9212 9555 6.658391 AGGATACCGAGTAACATATACTCACC 59.342 42.308 14.09 9.20 42.94 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 5.909621 ATTTGTAAGTCTCGTGGTAGCTA 57.090 39.130 0.00 0.00 0.00 3.32
17 18 5.147162 GCAGAAAATTTGTAAGTCTCGTGG 58.853 41.667 0.00 0.00 0.00 4.94
29 30 2.142319 CCAAACCCCGCAGAAAATTTG 58.858 47.619 0.00 0.00 0.00 2.32
30 31 1.542328 GCCAAACCCCGCAGAAAATTT 60.542 47.619 0.00 0.00 0.00 1.82
65 66 5.596836 TTTTCAAATGTCCAGCAAACTCT 57.403 34.783 0.00 0.00 0.00 3.24
223 224 2.484889 GAAAAGGACAACAGAGCGACT 58.515 47.619 0.00 0.00 0.00 4.18
230 231 5.182001 CCATCTACAAGGAAAAGGACAACAG 59.818 44.000 0.00 0.00 0.00 3.16
234 235 4.651778 CACCATCTACAAGGAAAAGGACA 58.348 43.478 0.00 0.00 0.00 4.02
293 294 3.130516 CGGATGAGCTCTAGTACAAACCA 59.869 47.826 16.19 0.00 0.00 3.67
315 316 4.394729 ACAGAGATACTAGTAGCTCCTGC 58.605 47.826 33.83 17.45 46.56 4.85
347 348 5.734855 AATACGGTTAATCATGCACAGAC 57.265 39.130 0.00 0.00 0.00 3.51
435 455 0.035343 GTCTTGGCCTCTTGGGGTAC 60.035 60.000 3.32 0.00 35.12 3.34
440 460 2.239654 TCCATAAGTCTTGGCCTCTTGG 59.760 50.000 3.32 3.61 34.06 3.61
441 461 3.634397 TCCATAAGTCTTGGCCTCTTG 57.366 47.619 3.32 0.00 34.06 3.02
442 462 3.054065 CCTTCCATAAGTCTTGGCCTCTT 60.054 47.826 3.32 6.31 34.06 2.85
443 463 2.507471 CCTTCCATAAGTCTTGGCCTCT 59.493 50.000 3.32 0.00 34.06 3.69
444 464 2.505819 TCCTTCCATAAGTCTTGGCCTC 59.494 50.000 3.32 0.00 34.06 4.70
445 465 2.507471 CTCCTTCCATAAGTCTTGGCCT 59.493 50.000 3.32 0.00 34.06 5.19
446 466 2.239907 ACTCCTTCCATAAGTCTTGGCC 59.760 50.000 0.00 0.00 34.06 5.36
447 467 3.636153 ACTCCTTCCATAAGTCTTGGC 57.364 47.619 0.00 0.00 34.06 4.52
511 531 4.270084 ACTCGTCCAATTATATGCAACGTG 59.730 41.667 0.00 0.00 32.90 4.49
512 532 4.439057 ACTCGTCCAATTATATGCAACGT 58.561 39.130 0.00 0.00 32.90 3.99
516 536 6.751514 AAACAACTCGTCCAATTATATGCA 57.248 33.333 0.00 0.00 0.00 3.96
563 583 1.375853 GCCAACTGCAGTGTGACACA 61.376 55.000 22.49 3.56 40.77 3.72
676 696 0.586319 CCGCGTGTGACATCTTGTTT 59.414 50.000 4.92 0.00 0.00 2.83
790 810 3.007074 TCAAGTAACATGGTACGCTCCAA 59.993 43.478 15.12 0.00 41.09 3.53
917 937 6.424812 GCAAAAGACTAATCTTGCAACCATTT 59.575 34.615 0.00 0.00 44.82 2.32
1053 1073 1.593006 CCGCGTGATCCATTGAAGTAC 59.407 52.381 4.92 0.00 0.00 2.73
1104 1124 1.593196 CACCTTCACGAAAGCTTCCA 58.407 50.000 0.00 0.00 33.29 3.53
1174 1194 2.464157 AGCAAGGTAGCAGAGTCAAC 57.536 50.000 0.00 0.00 36.85 3.18
1438 1467 2.095969 CGTATTTGCTGCCGTCTTTCAA 60.096 45.455 0.00 0.00 0.00 2.69
1466 1495 9.643693 AGCCAATCAACTAATTAACAGAATTTG 57.356 29.630 0.00 0.00 0.00 2.32
1913 1945 6.577427 AGCGAAGAGTTAAACAAAATTTAGCG 59.423 34.615 0.00 0.00 0.00 4.26
1926 1958 4.945246 AGAAGTGACAAGCGAAGAGTTAA 58.055 39.130 0.00 0.00 0.00 2.01
1934 1966 4.442706 AGAAGAAAAGAAGTGACAAGCGA 58.557 39.130 0.00 0.00 0.00 4.93
1984 2016 9.345517 CATATCATTCCTTTTTGTACAACACTG 57.654 33.333 8.07 0.00 0.00 3.66
2039 2071 9.315525 GATAGTGTGGAAAACTAATAGAGAACC 57.684 37.037 0.00 0.00 40.73 3.62
2133 2171 6.845302 TGACAAAACAGCATATCAGTCAATC 58.155 36.000 0.00 0.00 32.46 2.67
2173 2213 8.657074 ATTTCCATGCACAAGAAATATCATTG 57.343 30.769 15.23 0.00 38.20 2.82
2291 2332 7.988028 AGTCCATCTAGTAAACCAGAAATAAGC 59.012 37.037 0.00 0.00 0.00 3.09
2334 2375 2.600470 GGTGCCAACCCCCTTGAC 60.600 66.667 0.00 0.00 41.04 3.18
2502 2543 3.611113 CCATGGTTCGTGAAGTACTAACG 59.389 47.826 19.74 19.74 36.21 3.18
2764 2805 9.630098 GAAGAAAGATGCTGATTAAATTGTCAA 57.370 29.630 0.00 0.00 0.00 3.18
2765 2806 9.017509 AGAAGAAAGATGCTGATTAAATTGTCA 57.982 29.630 0.00 0.00 0.00 3.58
2766 2807 9.852091 AAGAAGAAAGATGCTGATTAAATTGTC 57.148 29.630 0.00 0.00 0.00 3.18
2767 2808 9.852091 GAAGAAGAAAGATGCTGATTAAATTGT 57.148 29.630 0.00 0.00 0.00 2.71
2771 2812 9.512588 AGAAGAAGAAGAAAGATGCTGATTAAA 57.487 29.630 0.00 0.00 0.00 1.52
2774 2815 7.884354 AGAAGAAGAAGAAGAAAGATGCTGATT 59.116 33.333 0.00 0.00 0.00 2.57
2775 2816 7.396418 AGAAGAAGAAGAAGAAAGATGCTGAT 58.604 34.615 0.00 0.00 0.00 2.90
2776 2817 6.767456 AGAAGAAGAAGAAGAAAGATGCTGA 58.233 36.000 0.00 0.00 0.00 4.26
2777 2818 7.388500 AGAAGAAGAAGAAGAAGAAAGATGCTG 59.612 37.037 0.00 0.00 0.00 4.41
2778 2819 7.452562 AGAAGAAGAAGAAGAAGAAAGATGCT 58.547 34.615 0.00 0.00 0.00 3.79
2779 2820 7.671495 AGAAGAAGAAGAAGAAGAAAGATGC 57.329 36.000 0.00 0.00 0.00 3.91
2780 2821 9.492973 AGAAGAAGAAGAAGAAGAAGAAAGATG 57.507 33.333 0.00 0.00 0.00 2.90
2782 2823 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAAGA 57.459 33.333 0.00 0.00 0.00 2.52
2783 2824 9.546428 AGAAGAAGAAGAAGAAGAAGAAGAAAG 57.454 33.333 0.00 0.00 0.00 2.62
2784 2825 9.898152 AAGAAGAAGAAGAAGAAGAAGAAGAAA 57.102 29.630 0.00 0.00 0.00 2.52
2785 2826 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2786 2827 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2787 2828 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2788 2829 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2789 2830 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2790 2831 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2791 2832 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2792 2833 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2793 2834 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2794 2835 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2795 2836 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2796 2837 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2797 2838 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2798 2839 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2799 2840 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
2800 2841 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2801 2842 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
2802 2843 8.981647 CAGAAGAAGAAGAAGAAGAAGAAGAAG 58.018 37.037 0.00 0.00 0.00 2.85
2803 2844 7.930865 CCAGAAGAAGAAGAAGAAGAAGAAGAA 59.069 37.037 0.00 0.00 0.00 2.52
2804 2845 7.441017 CCAGAAGAAGAAGAAGAAGAAGAAGA 58.559 38.462 0.00 0.00 0.00 2.87
2805 2846 6.650390 CCCAGAAGAAGAAGAAGAAGAAGAAG 59.350 42.308 0.00 0.00 0.00 2.85
2806 2847 6.100424 ACCCAGAAGAAGAAGAAGAAGAAGAA 59.900 38.462 0.00 0.00 0.00 2.52
2807 2848 5.604650 ACCCAGAAGAAGAAGAAGAAGAAGA 59.395 40.000 0.00 0.00 0.00 2.87
2808 2849 5.863965 ACCCAGAAGAAGAAGAAGAAGAAG 58.136 41.667 0.00 0.00 0.00 2.85
2809 2850 5.896073 ACCCAGAAGAAGAAGAAGAAGAA 57.104 39.130 0.00 0.00 0.00 2.52
2810 2851 7.560796 AATACCCAGAAGAAGAAGAAGAAGA 57.439 36.000 0.00 0.00 0.00 2.87
2811 2852 9.898152 ATTAATACCCAGAAGAAGAAGAAGAAG 57.102 33.333 0.00 0.00 0.00 2.85
2886 2927 3.756933 AACAAGTCCGCTTTACCAGTA 57.243 42.857 0.00 0.00 31.49 2.74
2898 2939 4.270808 CCATTTTGTGCAGAAAACAAGTCC 59.729 41.667 22.45 0.00 38.67 3.85
2905 2946 5.083533 ACAAGACCATTTTGTGCAGAAAA 57.916 34.783 22.27 22.27 37.38 2.29
3006 3047 4.466015 GCTTTGGGATTGGACATTTCCTTA 59.534 41.667 0.00 0.00 43.31 2.69
3117 3158 5.552870 AAGTAAGTCTTGACACACAGGAT 57.447 39.130 3.49 0.00 36.99 3.24
3211 3252 9.814899 ATTAGAACTAGTGTCATCTTCATTGAG 57.185 33.333 0.00 0.00 0.00 3.02
3303 3344 3.228188 TGCCTGTTTGGAGATGACTTT 57.772 42.857 0.00 0.00 38.35 2.66
3500 3541 2.092968 GTGCTTGTGATGATGGGGACTA 60.093 50.000 0.00 0.00 0.00 2.59
3501 3542 0.994247 TGCTTGTGATGATGGGGACT 59.006 50.000 0.00 0.00 0.00 3.85
3502 3543 1.098050 GTGCTTGTGATGATGGGGAC 58.902 55.000 0.00 0.00 0.00 4.46
3608 3649 2.483538 CCCCTTTTGGCTTGTTGTGAAG 60.484 50.000 0.00 0.00 38.58 3.02
3625 3666 1.005289 AGTGCCCATGATCTCCCCT 59.995 57.895 0.00 0.00 0.00 4.79
3807 3848 1.391485 CCTTGTCTTCGTGAAGCATCG 59.609 52.381 4.72 2.37 38.28 3.84
3933 3974 5.476091 AATCTCACCTTTCGTTTCTCTCT 57.524 39.130 0.00 0.00 0.00 3.10
3942 3983 5.452777 GTTGAGGAAAAATCTCACCTTTCG 58.547 41.667 0.00 0.00 40.51 3.46
3954 3995 1.475403 TGCGGTTGGTTGAGGAAAAA 58.525 45.000 0.00 0.00 0.00 1.94
4053 4095 4.023707 GCATTGCCTTTACGCTCTGATATT 60.024 41.667 0.00 0.00 0.00 1.28
4108 4150 2.045131 ACGTACCAGGAGAGTCCGC 61.045 63.158 0.00 0.00 42.75 5.54
4125 4167 3.767630 AACACTCGGTGGTGGGCAC 62.768 63.158 8.57 0.00 41.09 5.01
4301 4343 5.989477 TCAGGGTTGTAATATGGACTTCTG 58.011 41.667 0.00 0.00 0.00 3.02
4412 4454 6.034898 GTGTTGAAAGTTGAAACCAGTTCATG 59.965 38.462 5.77 0.00 45.71 3.07
4413 4455 6.099341 GTGTTGAAAGTTGAAACCAGTTCAT 58.901 36.000 5.77 0.00 45.71 2.57
4585 4628 5.191426 TCACTTAGGTACGCTATGTCTTCT 58.809 41.667 6.83 0.00 0.00 2.85
4767 4810 8.994170 GTAATGAAAGGAGTAATCTTCATAGCC 58.006 37.037 7.75 0.00 0.00 3.93
4814 4858 5.694995 ACTACCCACAAATGCATAGCTAAT 58.305 37.500 0.00 0.00 0.00 1.73
4889 4933 7.561356 CCAGAAGAAAATGGTAGGGATTAATGT 59.439 37.037 0.00 0.00 0.00 2.71
4908 4952 4.943705 GCATAAATTGACTGGACCAGAAGA 59.056 41.667 28.56 12.55 35.18 2.87
4909 4953 4.946157 AGCATAAATTGACTGGACCAGAAG 59.054 41.667 28.56 2.71 35.18 2.85
4943 4987 2.888212 TCAAGGCTACCCTGCAAAATT 58.112 42.857 0.00 0.00 41.90 1.82
5084 5128 4.122776 CAAGTTGATCCAGGATAGGTTCG 58.877 47.826 0.32 0.00 31.38 3.95
5203 5247 4.945246 TGGATATCCTTCGCTTCTGTAAC 58.055 43.478 22.35 0.00 36.82 2.50
5381 5425 6.656693 CCTTCTCCATGACATTACTGTTCTTT 59.343 38.462 0.00 0.00 35.14 2.52
5570 5614 5.447757 TGCACATGGGAAGATAATCAATGA 58.552 37.500 0.00 0.00 0.00 2.57
5604 5648 4.019860 ACTGAGAGTAGACCATGCATGTTT 60.020 41.667 24.58 11.67 0.00 2.83
5720 5772 0.773644 AGGCAAACCCACTCATGAGT 59.226 50.000 22.89 22.89 43.61 3.41
5746 5798 3.447229 TGTTGGAATATGAGCAGTCTCGA 59.553 43.478 0.00 0.00 42.26 4.04
5823 5875 4.336993 CACTAGCCAACACAACCAAAAGTA 59.663 41.667 0.00 0.00 0.00 2.24
5875 5928 2.616510 CCTGGACATGAACTCAAGACCC 60.617 54.545 0.00 0.00 30.52 4.46
5889 5942 4.888326 ATAAATTGCAAAAGCCTGGACA 57.112 36.364 1.71 0.00 0.00 4.02
5913 5966 1.376086 GGGGGCAGCAGCAATTTTT 59.624 52.632 2.65 0.00 44.61 1.94
5914 5967 3.071575 GGGGGCAGCAGCAATTTT 58.928 55.556 2.65 0.00 44.61 1.82
5928 5981 0.976073 ATACGTGGACACAGAGGGGG 60.976 60.000 0.00 0.00 0.00 5.40
5929 5982 1.681793 CTATACGTGGACACAGAGGGG 59.318 57.143 0.00 0.00 0.00 4.79
5930 5983 1.681793 CCTATACGTGGACACAGAGGG 59.318 57.143 0.00 0.00 0.00 4.30
5931 5984 1.067212 GCCTATACGTGGACACAGAGG 59.933 57.143 0.00 0.00 0.00 3.69
5932 5985 1.067212 GGCCTATACGTGGACACAGAG 59.933 57.143 0.00 0.00 31.53 3.35
5933 5986 1.108776 GGCCTATACGTGGACACAGA 58.891 55.000 0.00 0.00 31.53 3.41
5934 5987 1.067212 GAGGCCTATACGTGGACACAG 59.933 57.143 4.42 0.00 34.31 3.66
5935 5988 1.108776 GAGGCCTATACGTGGACACA 58.891 55.000 4.42 0.00 34.31 3.72
5936 5989 1.067212 CAGAGGCCTATACGTGGACAC 59.933 57.143 4.42 0.00 34.31 3.67
5937 5990 1.341679 ACAGAGGCCTATACGTGGACA 60.342 52.381 4.42 0.00 34.31 4.02
5938 5991 1.400737 ACAGAGGCCTATACGTGGAC 58.599 55.000 4.42 0.00 0.00 4.02
5939 5992 2.860009 CTACAGAGGCCTATACGTGGA 58.140 52.381 4.42 0.00 0.00 4.02
5940 5993 1.269998 GCTACAGAGGCCTATACGTGG 59.730 57.143 4.42 0.11 0.00 4.94
5941 5994 1.269998 GGCTACAGAGGCCTATACGTG 59.730 57.143 4.42 0.59 45.57 4.49
5942 5995 1.618487 GGCTACAGAGGCCTATACGT 58.382 55.000 4.42 0.00 45.57 3.57
5951 6004 3.706594 TCAAAGAGGTATGGCTACAGAGG 59.293 47.826 0.00 0.00 0.00 3.69
5952 6005 4.404073 ACTCAAAGAGGTATGGCTACAGAG 59.596 45.833 0.00 0.00 33.35 3.35
5953 6006 4.353777 ACTCAAAGAGGTATGGCTACAGA 58.646 43.478 0.00 0.00 33.35 3.41
5954 6007 4.404073 AGACTCAAAGAGGTATGGCTACAG 59.596 45.833 0.00 0.00 33.35 2.74
5955 6008 4.353777 AGACTCAAAGAGGTATGGCTACA 58.646 43.478 0.00 0.00 33.35 2.74
5956 6009 6.658188 ATAGACTCAAAGAGGTATGGCTAC 57.342 41.667 0.00 0.00 33.35 3.58
5957 6010 6.839134 TGAATAGACTCAAAGAGGTATGGCTA 59.161 38.462 0.00 0.00 33.35 3.93
5958 6011 5.663106 TGAATAGACTCAAAGAGGTATGGCT 59.337 40.000 0.00 0.00 33.35 4.75
5959 6012 5.755861 GTGAATAGACTCAAAGAGGTATGGC 59.244 44.000 0.00 0.00 33.35 4.40
5960 6013 5.980116 CGTGAATAGACTCAAAGAGGTATGG 59.020 44.000 0.00 0.00 33.35 2.74
5961 6014 6.473778 CACGTGAATAGACTCAAAGAGGTATG 59.526 42.308 10.90 0.00 33.35 2.39
5962 6015 6.153000 ACACGTGAATAGACTCAAAGAGGTAT 59.847 38.462 25.01 0.00 33.35 2.73
5963 6016 5.475909 ACACGTGAATAGACTCAAAGAGGTA 59.524 40.000 25.01 0.00 33.35 3.08
5964 6017 4.281182 ACACGTGAATAGACTCAAAGAGGT 59.719 41.667 25.01 0.00 33.35 3.85
5965 6018 4.810790 ACACGTGAATAGACTCAAAGAGG 58.189 43.478 25.01 0.00 33.35 3.69
5966 6019 5.920840 TCAACACGTGAATAGACTCAAAGAG 59.079 40.000 25.01 0.00 31.51 2.85
5967 6020 5.690409 GTCAACACGTGAATAGACTCAAAGA 59.310 40.000 25.01 0.00 38.23 2.52
5968 6021 5.692204 AGTCAACACGTGAATAGACTCAAAG 59.308 40.000 25.01 0.00 38.23 2.77
5969 6022 5.597806 AGTCAACACGTGAATAGACTCAAA 58.402 37.500 25.01 0.00 38.23 2.69
5970 6023 5.196341 AGTCAACACGTGAATAGACTCAA 57.804 39.130 25.01 0.00 38.23 3.02
5971 6024 4.848562 AGTCAACACGTGAATAGACTCA 57.151 40.909 25.01 0.00 38.23 3.41
5972 6025 4.621886 GGAAGTCAACACGTGAATAGACTC 59.378 45.833 25.01 18.38 38.23 3.36
5973 6026 4.557205 GGAAGTCAACACGTGAATAGACT 58.443 43.478 25.01 22.84 38.23 3.24
5974 6027 3.678548 GGGAAGTCAACACGTGAATAGAC 59.321 47.826 25.01 21.15 38.23 2.59
5975 6028 3.613193 CGGGAAGTCAACACGTGAATAGA 60.613 47.826 25.01 10.98 38.23 1.98
5976 6029 2.666508 CGGGAAGTCAACACGTGAATAG 59.333 50.000 25.01 8.68 38.23 1.73
5977 6030 2.679450 CGGGAAGTCAACACGTGAATA 58.321 47.619 25.01 3.25 38.23 1.75
5978 6031 1.508632 CGGGAAGTCAACACGTGAAT 58.491 50.000 25.01 7.76 38.23 2.57
5979 6032 1.155424 GCGGGAAGTCAACACGTGAA 61.155 55.000 25.01 4.09 38.23 3.18
5980 6033 1.593209 GCGGGAAGTCAACACGTGA 60.593 57.895 25.01 0.00 36.49 4.35
5981 6034 2.935955 GCGGGAAGTCAACACGTG 59.064 61.111 15.48 15.48 36.49 4.49
5982 6035 2.660552 CGCGGGAAGTCAACACGT 60.661 61.111 0.00 0.00 36.49 4.49
5983 6036 2.654912 GACGCGGGAAGTCAACACG 61.655 63.158 12.47 0.00 38.42 4.49
5984 6037 1.593209 TGACGCGGGAAGTCAACAC 60.593 57.895 12.47 0.00 44.56 3.32
5985 6038 2.816012 TGACGCGGGAAGTCAACA 59.184 55.556 12.47 0.00 44.56 3.33
5988 6041 2.028484 GTGTGACGCGGGAAGTCA 59.972 61.111 12.47 0.61 45.23 3.41
5989 6042 3.103911 CGTGTGACGCGGGAAGTC 61.104 66.667 12.47 0.00 38.98 3.01
5991 6044 3.834447 TCACGTGTGACGCGGGAAG 62.834 63.158 22.06 8.48 46.78 3.46
5992 6045 3.902086 TCACGTGTGACGCGGGAA 61.902 61.111 22.06 4.90 46.78 3.97
6054 6107 3.699038 GGCTGTTCATTAGCAATAACCCA 59.301 43.478 0.00 0.00 42.88 4.51
6062 6115 5.453339 GGTCTACTATGGCTGTTCATTAGCA 60.453 44.000 0.00 0.00 42.88 3.49
6159 6213 4.600692 AACAGTTGAAAAACATAGCCCC 57.399 40.909 0.00 0.00 0.00 5.80
6174 6228 6.545666 TCACATGTCCAACATTCTTAACAGTT 59.454 34.615 0.00 0.00 36.53 3.16
6252 6306 8.621532 TTTGCCTCCAATACTCATCATATTAC 57.378 34.615 0.00 0.00 0.00 1.89
6409 6482 9.495572 CTGTAATTTCAGAAAACTAAGAGACCT 57.504 33.333 6.22 0.00 37.61 3.85
6483 6556 3.657634 GTCTTCACTCTGTGCAAGATCA 58.342 45.455 0.00 0.00 34.75 2.92
6585 6658 2.012414 GTTAGTCGACGCGCACACA 61.012 57.895 5.73 0.00 0.00 3.72
6588 6661 2.126580 AGGTTAGTCGACGCGCAC 60.127 61.111 5.73 0.00 0.00 5.34
6589 6662 2.126618 CAGGTTAGTCGACGCGCA 60.127 61.111 5.73 0.00 0.00 6.09
6590 6663 1.280206 AAACAGGTTAGTCGACGCGC 61.280 55.000 5.73 0.00 0.00 6.86
6591 6664 0.706729 GAAACAGGTTAGTCGACGCG 59.293 55.000 10.46 3.53 0.00 6.01
6648 6721 9.840427 AAAAGGATTACAATTAACTTGACATCG 57.160 29.630 5.11 0.00 38.29 3.84
6816 6910 1.678598 TATGGGGCCGAACCGTGTAG 61.679 60.000 0.00 0.00 40.62 2.74
6821 6915 3.750373 CTGGTATGGGGCCGAACCG 62.750 68.421 13.79 6.93 40.62 4.44
6832 6926 3.181497 CGCTGTGAAAATTCCCTGGTATG 60.181 47.826 0.00 0.00 0.00 2.39
6849 6944 4.827087 CTCTCCATGGCGCGCTGT 62.827 66.667 32.29 17.17 0.00 4.40
6851 6946 4.521062 GTCTCTCCATGGCGCGCT 62.521 66.667 32.29 9.55 0.00 5.92
6876 6971 6.363577 ACCATGTATTTCTCGTAAGCAATG 57.636 37.500 0.00 0.00 37.18 2.82
6932 7027 5.944007 TGACCCAAAGAAATTAAGAGGTAGC 59.056 40.000 0.00 0.00 0.00 3.58
7024 7127 5.823570 TCATTCGACTCAAAAACCCAAGTAA 59.176 36.000 0.00 0.00 0.00 2.24
7142 7328 7.056635 ACCAAGGTCATTATCTCATAAACAGG 58.943 38.462 0.00 0.00 0.00 4.00
7348 7537 3.250744 CTCTTCGTAGATTTGGCAACGA 58.749 45.455 7.23 7.23 42.12 3.85
7437 7626 1.280421 GTGAAGCAGAATCTGGGTCCT 59.720 52.381 12.66 0.00 31.21 3.85
7571 7855 7.644986 AGCGATATTATAGTGAAGACAAAGC 57.355 36.000 0.00 0.00 0.00 3.51
7900 8184 3.130280 TCTTCCGTTCCCCTTTTACAC 57.870 47.619 0.00 0.00 0.00 2.90
7903 8187 6.776603 TGTTTTATTCTTCCGTTCCCCTTTTA 59.223 34.615 0.00 0.00 0.00 1.52
8077 8361 0.965363 ATCGTTTGCGGGATTTGCCT 60.965 50.000 0.00 0.00 38.89 4.75
8093 8377 3.935203 ACAAGTCTGGTATTTCAGCATCG 59.065 43.478 0.00 0.00 34.91 3.84
8114 8398 1.677217 CCTGGCAGCTCAAGGTTAGAC 60.677 57.143 9.56 0.00 0.00 2.59
8150 8434 1.588674 TATTATTCAACCAGCCGCCG 58.411 50.000 0.00 0.00 0.00 6.46
8377 8666 5.517054 GTGAGGTCTCTACAAGCTTTTATCG 59.483 44.000 0.00 0.00 0.00 2.92
8512 8801 4.261197 CCTTTCAAGTACAGTCAAGCAACC 60.261 45.833 0.00 0.00 0.00 3.77
8522 8811 6.258727 CCATATGTACAGCCTTTCAAGTACAG 59.741 42.308 0.33 0.00 46.70 2.74
8529 8818 5.865085 GGATACCATATGTACAGCCTTTCA 58.135 41.667 0.33 0.00 30.62 2.69
8610 8900 1.737363 GCAGACCGCAACCAACAAAAA 60.737 47.619 0.00 0.00 41.79 1.94
8648 8938 2.955881 GCCAGGTAGCAACGGAGGT 61.956 63.158 0.00 0.00 0.00 3.85
8769 9059 0.808755 GTACTTGGTCCCGCAATTGG 59.191 55.000 7.72 0.00 0.00 3.16
8787 9077 7.750229 TTCAGCTCAATTTGAAGTTCATAGT 57.250 32.000 6.36 0.00 0.00 2.12
8804 9094 1.899142 AGGGAGTGTCTCTTTCAGCTC 59.101 52.381 0.00 0.00 0.00 4.09
8807 9097 2.896685 ACAGAGGGAGTGTCTCTTTCAG 59.103 50.000 0.00 0.00 39.36 3.02
8884 9174 5.720371 TTGGCGATAATAAAATGGATGGG 57.280 39.130 0.00 0.00 0.00 4.00
8944 9234 4.997395 ACAATTGCTATGTGATCGGTATCC 59.003 41.667 5.05 0.00 0.00 2.59
8945 9235 6.017934 ACAACAATTGCTATGTGATCGGTATC 60.018 38.462 5.05 0.00 0.00 2.24
8967 9310 2.588027 TGTTGTGCTACTCGTCACAA 57.412 45.000 3.96 3.96 46.97 3.33
8969 9312 1.192534 GCTTGTTGTGCTACTCGTCAC 59.807 52.381 0.00 0.00 0.00 3.67
8970 9313 1.497991 GCTTGTTGTGCTACTCGTCA 58.502 50.000 0.00 0.00 0.00 4.35
9010 9353 7.390162 TGTTGGCATTTGTTTCTTCTTCTTTTT 59.610 29.630 0.00 0.00 0.00 1.94
9011 9354 6.878389 TGTTGGCATTTGTTTCTTCTTCTTTT 59.122 30.769 0.00 0.00 0.00 2.27
9015 9358 6.479660 TCATTGTTGGCATTTGTTTCTTCTTC 59.520 34.615 0.00 0.00 0.00 2.87
9040 9383 0.381801 CCGTGCTTTTGTCAAGCTGT 59.618 50.000 8.00 0.00 43.38 4.40
9046 9389 0.865111 CGTCATCCGTGCTTTTGTCA 59.135 50.000 0.00 0.00 0.00 3.58
9079 9422 1.826024 CTGGGTCGATTCTGGAGGG 59.174 63.158 0.00 0.00 0.00 4.30
9080 9423 1.144936 GCTGGGTCGATTCTGGAGG 59.855 63.158 0.00 0.00 0.00 4.30
9082 9425 1.191489 TGTGCTGGGTCGATTCTGGA 61.191 55.000 0.00 0.00 0.00 3.86
9083 9426 0.742281 CTGTGCTGGGTCGATTCTGG 60.742 60.000 0.00 0.00 0.00 3.86
9084 9427 0.247460 TCTGTGCTGGGTCGATTCTG 59.753 55.000 0.00 0.00 0.00 3.02
9085 9428 1.137872 GATCTGTGCTGGGTCGATTCT 59.862 52.381 0.00 0.00 0.00 2.40
9086 9429 1.134699 TGATCTGTGCTGGGTCGATTC 60.135 52.381 0.00 0.00 0.00 2.52
9089 9432 0.247460 CTTGATCTGTGCTGGGTCGA 59.753 55.000 0.00 0.00 0.00 4.20
9090 9433 0.742281 CCTTGATCTGTGCTGGGTCG 60.742 60.000 0.00 0.00 0.00 4.79
9091 9434 1.028868 GCCTTGATCTGTGCTGGGTC 61.029 60.000 0.00 0.00 0.00 4.46
9092 9435 1.001641 GCCTTGATCTGTGCTGGGT 60.002 57.895 0.00 0.00 0.00 4.51
9093 9436 0.747283 GAGCCTTGATCTGTGCTGGG 60.747 60.000 7.93 0.00 33.41 4.45
9096 9439 1.220206 CGGAGCCTTGATCTGTGCT 59.780 57.895 3.59 3.59 36.62 4.40
9097 9440 0.179062 ATCGGAGCCTTGATCTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
9099 9442 0.755686 GGATCGGAGCCTTGATCTGT 59.244 55.000 4.74 0.00 40.63 3.41
9101 9444 0.757188 ACGGATCGGAGCCTTGATCT 60.757 55.000 10.99 0.00 40.63 2.75
9102 9445 0.319125 GACGGATCGGAGCCTTGATC 60.319 60.000 10.99 0.00 40.19 2.92
9104 9447 2.771639 CGACGGATCGGAGCCTTGA 61.772 63.158 10.99 0.00 44.99 3.02
9105 9448 2.278857 CGACGGATCGGAGCCTTG 60.279 66.667 10.99 0.00 44.99 3.61
9114 9457 2.228914 GCTTGGTACGCGACGGATC 61.229 63.158 15.93 0.00 0.00 3.36
9115 9458 2.202703 GCTTGGTACGCGACGGAT 60.203 61.111 15.93 0.00 0.00 4.18
9116 9459 3.620300 CTGCTTGGTACGCGACGGA 62.620 63.158 15.93 0.00 0.00 4.69
9117 9460 3.179265 CTGCTTGGTACGCGACGG 61.179 66.667 15.93 2.27 0.00 4.79
9118 9461 3.838795 GCTGCTTGGTACGCGACG 61.839 66.667 15.93 0.00 0.00 5.12
9119 9462 2.736995 TGCTGCTTGGTACGCGAC 60.737 61.111 15.93 6.63 0.00 5.19
9120 9463 2.736995 GTGCTGCTTGGTACGCGA 60.737 61.111 15.93 0.00 0.00 5.87
9121 9464 3.788766 GGTGCTGCTTGGTACGCG 61.789 66.667 3.53 3.53 0.00 6.01
9122 9465 2.358737 AGGTGCTGCTTGGTACGC 60.359 61.111 0.00 0.00 0.00 4.42
9123 9466 1.741770 GGAGGTGCTGCTTGGTACG 60.742 63.158 0.00 0.00 0.00 3.67
9124 9467 0.250727 TTGGAGGTGCTGCTTGGTAC 60.251 55.000 0.00 0.00 0.00 3.34
9125 9468 0.036732 CTTGGAGGTGCTGCTTGGTA 59.963 55.000 0.00 0.00 0.00 3.25
9147 9490 2.461110 ATCGTCGGCGTTGCATTCC 61.461 57.895 10.18 0.00 39.49 3.01
9167 9510 2.740055 GACACGTCCAGGCAGCAG 60.740 66.667 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.