Multiple sequence alignment - TraesCS1D01G224900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G224900 chr1D 100.000 9174 0 0 770 9943 313304828 313295655 0.000000e+00 16942.0
1 TraesCS1D01G224900 chr1D 100.000 243 0 0 1 243 313305597 313305355 5.480000e-122 449.0
2 TraesCS1D01G224900 chr1B 94.247 3007 100 22 1315 4268 423651955 423648969 0.000000e+00 4527.0
3 TraesCS1D01G224900 chr1B 95.126 2811 111 11 4266 7066 423648832 423646038 0.000000e+00 4409.0
4 TraesCS1D01G224900 chr1B 95.046 1635 61 10 7060 8683 423645652 423644027 0.000000e+00 2553.0
5 TraesCS1D01G224900 chr1B 97.881 472 8 2 8743 9213 423643917 423643447 0.000000e+00 815.0
6 TraesCS1D01G224900 chr1B 91.860 516 16 11 770 1272 423652458 423651956 0.000000e+00 697.0
7 TraesCS1D01G224900 chr1B 90.281 463 27 9 9494 9943 423642956 423642499 3.090000e-164 590.0
8 TraesCS1D01G224900 chr1B 97.436 39 1 0 8704 8742 423644022 423643984 6.450000e-07 67.6
9 TraesCS1D01G224900 chr1A 94.799 1365 41 12 7861 9217 393462708 393461366 0.000000e+00 2100.0
10 TraesCS1D01G224900 chr1A 90.199 1561 129 15 4595 6145 393466178 393464632 0.000000e+00 2013.0
11 TraesCS1D01G224900 chr1A 90.101 1091 81 17 1317 2384 393469584 393468498 0.000000e+00 1391.0
12 TraesCS1D01G224900 chr1A 89.562 891 74 6 3385 4260 393467565 393466679 0.000000e+00 1112.0
13 TraesCS1D01G224900 chr1A 91.881 505 26 8 774 1272 393470081 393469586 0.000000e+00 691.0
14 TraesCS1D01G224900 chr1A 85.926 675 49 15 7012 7651 393463584 393462921 0.000000e+00 678.0
15 TraesCS1D01G224900 chr1A 91.091 449 22 5 2461 2892 393468365 393467918 8.600000e-165 592.0
16 TraesCS1D01G224900 chr1A 96.026 302 12 0 4266 4567 393466547 393466246 8.970000e-135 492.0
17 TraesCS1D01G224900 chr1A 91.808 354 23 3 9593 9943 393459264 393458914 1.160000e-133 488.0
18 TraesCS1D01G224900 chr1A 88.103 311 20 10 2976 3281 393467919 393467621 4.420000e-93 353.0
19 TraesCS1D01G224900 chr1A 85.075 335 25 13 6686 7015 393463942 393463628 1.610000e-82 318.0
20 TraesCS1D01G224900 chr1A 89.091 220 12 2 9394 9601 393460731 393460512 7.660000e-66 263.0
21 TraesCS1D01G224900 chr1A 88.571 210 16 5 6046 6255 393464631 393464430 2.140000e-61 248.0
22 TraesCS1D01G224900 chr1A 84.211 171 9 3 7580 7733 393462916 393462747 6.220000e-32 150.0
23 TraesCS1D01G224900 chr1A 91.000 100 8 1 6476 6575 393464182 393464084 6.270000e-27 134.0
24 TraesCS1D01G224900 chr3D 82.254 417 41 19 9531 9942 95876483 95876871 7.450000e-86 329.0
25 TraesCS1D01G224900 chr3D 81.535 417 44 19 9531 9942 389197681 389198069 7.500000e-81 313.0
26 TraesCS1D01G224900 chr7D 81.775 417 43 19 9531 9942 342824030 342824418 1.610000e-82 318.0
27 TraesCS1D01G224900 chr5D 81.775 417 43 19 9531 9942 439554268 439553880 1.610000e-82 318.0
28 TraesCS1D01G224900 chrUn 81.535 417 44 19 9531 9942 249906103 249905715 7.500000e-81 313.0
29 TraesCS1D01G224900 chrUn 81.627 381 37 19 9531 9906 24891648 24892000 1.630000e-72 285.0
30 TraesCS1D01G224900 chr2B 97.297 37 1 0 7772 7808 587241156 587241120 8.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G224900 chr1D 313295655 313305597 9942 True 8695.500000 16942 100.000000 1 9943 2 chr1D.!!$R1 9942
1 TraesCS1D01G224900 chr1B 423642499 423652458 9959 True 1951.228571 4527 94.553857 770 9943 7 chr1B.!!$R1 9173
2 TraesCS1D01G224900 chr1A 393458914 393470081 11167 True 734.866667 2100 89.829600 774 9943 15 chr1A.!!$R1 9169

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
239 240 0.240145 GGAAAAAGGTTTCGGCGAGG 59.760 55.000 10.46 0.0 43.56 4.63 F
1283 1300 0.169009 GCGATTTGAGTGGAGGTTGC 59.831 55.000 0.00 0.0 0.00 4.17 F
1284 1301 0.443869 CGATTTGAGTGGAGGTTGCG 59.556 55.000 0.00 0.0 0.00 4.85 F
1285 1302 0.169009 GATTTGAGTGGAGGTTGCGC 59.831 55.000 0.00 0.0 0.00 6.09 F
1368 1385 0.692476 CACAGATTCACCCCCAGTCA 59.308 55.000 0.00 0.0 0.00 3.41 F
1712 1732 1.064946 GGATGACTGCTCTCGACCG 59.935 63.158 0.00 0.0 0.00 4.79 F
2287 2322 4.003648 GGTTGAACCACTAATCTGGTCTG 58.996 47.826 9.98 0.0 44.32 3.51 F
3353 3490 1.691976 TGGATACTACCCCAGATTGCG 59.308 52.381 0.00 0.0 37.61 4.85 F
4170 4332 4.164988 CCCTGTGATCTCCCAGTTAAGAAT 59.835 45.833 0.00 0.0 0.00 2.40 F
5998 6364 1.038130 CCCTCGTCCGTGGAGATTCT 61.038 60.000 9.22 0.0 33.27 2.40 F
6871 7449 0.901124 ACTTAGCTGGCTCAGAGGTG 59.099 55.000 10.28 0.0 32.44 4.00 F
7829 8977 1.137086 AGTGTTGGTATAGAGGCTGCG 59.863 52.381 0.00 0.0 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1370 1387 0.039256 TCAGAAAACCAAGCATGCGC 60.039 50.000 13.01 0.0 38.99 6.09 R
2329 2371 3.955650 TGTGGCTGAAGGTACTAGTTC 57.044 47.619 0.00 0.0 38.49 3.01 R
3250 3387 3.995199 TCAGTTACTCAACAGCAGAAGG 58.005 45.455 0.00 0.0 37.10 3.46 R
3334 3471 1.968493 TCGCAATCTGGGGTAGTATCC 59.032 52.381 0.00 0.0 0.00 2.59 R
3342 3479 1.089920 CAAAGACTCGCAATCTGGGG 58.910 55.000 0.00 0.0 0.00 4.96 R
3353 3490 6.385033 CCATTTTCAGGTCATTCAAAGACTC 58.615 40.000 0.00 0.0 36.29 3.36 R
4079 4241 2.407428 CGTCCACGAGCTGCTAGGA 61.407 63.158 14.25 13.2 43.02 2.94 R
4399 4704 1.021968 GAGCTGTTTGGACGTTTGGT 58.978 50.000 0.00 0.0 0.00 3.67 R
6173 6630 0.386113 TGTTACTTTTTGGGGTGCGC 59.614 50.000 0.00 0.0 0.00 6.09 R
7572 8625 0.251165 AGCCACGTTGCCCAGTTTAT 60.251 50.000 8.18 0.0 0.00 1.40 R
8352 9500 1.055338 GCAACAGCGATTGAAGCAAC 58.945 50.000 7.12 0.0 37.01 4.17 R
9383 10932 0.538057 TGCAAGTTGCTCAGGGAAGG 60.538 55.000 27.17 0.0 45.31 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 8.783833 TTCATGAACCTTTTTGAATTTTGTGA 57.216 26.923 3.38 0.00 0.00 3.58
84 85 8.783833 TCATGAACCTTTTTGAATTTTGTGAA 57.216 26.923 0.00 0.00 0.00 3.18
85 86 8.663911 TCATGAACCTTTTTGAATTTTGTGAAC 58.336 29.630 0.00 0.00 0.00 3.18
86 87 8.667463 CATGAACCTTTTTGAATTTTGTGAACT 58.333 29.630 0.00 0.00 0.00 3.01
87 88 8.614469 TGAACCTTTTTGAATTTTGTGAACTT 57.386 26.923 0.00 0.00 0.00 2.66
88 89 9.061435 TGAACCTTTTTGAATTTTGTGAACTTT 57.939 25.926 0.00 0.00 0.00 2.66
89 90 9.891828 GAACCTTTTTGAATTTTGTGAACTTTT 57.108 25.926 0.00 0.00 0.00 2.27
90 91 9.891828 AACCTTTTTGAATTTTGTGAACTTTTC 57.108 25.926 0.00 0.00 0.00 2.29
91 92 9.061435 ACCTTTTTGAATTTTGTGAACTTTTCA 57.939 25.926 0.00 0.00 37.33 2.69
92 93 9.890352 CCTTTTTGAATTTTGTGAACTTTTCAA 57.110 25.926 0.00 0.00 42.15 2.69
103 104 9.434420 TTTGTGAACTTTTCAAATTCATGAAGT 57.566 25.926 14.54 8.63 42.15 3.01
104 105 9.434420 TTGTGAACTTTTCAAATTCATGAAGTT 57.566 25.926 15.05 15.05 42.15 2.66
105 106 9.434420 TGTGAACTTTTCAAATTCATGAAGTTT 57.566 25.926 17.93 12.67 42.15 2.66
121 122 6.959671 TGAAGTTTTTCATTTTTGCGAGTT 57.040 29.167 0.00 0.00 38.37 3.01
122 123 7.357951 TGAAGTTTTTCATTTTTGCGAGTTT 57.642 28.000 0.00 0.00 38.37 2.66
123 124 7.801752 TGAAGTTTTTCATTTTTGCGAGTTTT 58.198 26.923 0.00 0.00 38.37 2.43
124 125 8.286097 TGAAGTTTTTCATTTTTGCGAGTTTTT 58.714 25.926 0.00 0.00 38.37 1.94
166 167 5.657470 TTTGTGAACTCTTGAGATTGACG 57.343 39.130 4.49 0.00 0.00 4.35
167 168 4.322080 TGTGAACTCTTGAGATTGACGT 57.678 40.909 4.49 0.00 0.00 4.34
168 169 4.051237 TGTGAACTCTTGAGATTGACGTG 58.949 43.478 0.00 0.00 0.00 4.49
169 170 4.051922 GTGAACTCTTGAGATTGACGTGT 58.948 43.478 0.00 0.00 0.00 4.49
170 171 5.220381 GTGAACTCTTGAGATTGACGTGTA 58.780 41.667 0.00 0.00 0.00 2.90
171 172 5.690409 GTGAACTCTTGAGATTGACGTGTAA 59.310 40.000 0.00 0.00 0.00 2.41
172 173 5.920840 TGAACTCTTGAGATTGACGTGTAAG 59.079 40.000 0.00 0.00 0.00 2.34
173 174 5.455056 ACTCTTGAGATTGACGTGTAAGT 57.545 39.130 0.00 0.00 0.00 2.24
174 175 5.844004 ACTCTTGAGATTGACGTGTAAGTT 58.156 37.500 0.00 0.00 0.00 2.66
175 176 6.281405 ACTCTTGAGATTGACGTGTAAGTTT 58.719 36.000 0.00 0.00 0.00 2.66
176 177 6.761714 ACTCTTGAGATTGACGTGTAAGTTTT 59.238 34.615 0.00 0.00 0.00 2.43
177 178 7.042658 ACTCTTGAGATTGACGTGTAAGTTTTC 60.043 37.037 0.00 0.00 0.00 2.29
178 179 5.570262 TGAGATTGACGTGTAAGTTTTCG 57.430 39.130 0.00 0.00 0.00 3.46
179 180 5.045215 TGAGATTGACGTGTAAGTTTTCGT 58.955 37.500 0.00 0.00 39.21 3.85
180 181 5.051307 TGAGATTGACGTGTAAGTTTTCGTG 60.051 40.000 0.00 0.00 36.67 4.35
181 182 4.807304 AGATTGACGTGTAAGTTTTCGTGT 59.193 37.500 0.00 0.00 36.67 4.49
182 183 3.910862 TGACGTGTAAGTTTTCGTGTG 57.089 42.857 0.00 0.00 36.67 3.82
183 184 2.029486 TGACGTGTAAGTTTTCGTGTGC 59.971 45.455 0.00 0.00 36.67 4.57
184 185 1.005766 ACGTGTAAGTTTTCGTGTGCG 60.006 47.619 0.00 0.00 35.24 5.34
185 186 1.255859 CGTGTAAGTTTTCGTGTGCGA 59.744 47.619 0.00 0.00 46.36 5.10
193 194 3.010767 TCGTGTGCGAACAACTGC 58.989 55.556 0.00 0.00 44.92 4.40
194 195 2.052237 CGTGTGCGAACAACTGCC 60.052 61.111 0.00 0.00 41.33 4.85
195 196 2.534019 CGTGTGCGAACAACTGCCT 61.534 57.895 0.00 0.00 41.33 4.75
196 197 1.279840 GTGTGCGAACAACTGCCTC 59.720 57.895 0.00 0.00 0.00 4.70
197 198 2.243957 TGTGCGAACAACTGCCTCG 61.244 57.895 0.00 0.00 35.70 4.63
200 201 3.036084 CGAACAACTGCCTCGCGT 61.036 61.111 5.77 0.00 0.00 6.01
201 202 1.731613 CGAACAACTGCCTCGCGTA 60.732 57.895 5.77 0.00 0.00 4.42
202 203 1.779683 GAACAACTGCCTCGCGTAC 59.220 57.895 5.77 0.00 0.00 3.67
203 204 1.941476 GAACAACTGCCTCGCGTACG 61.941 60.000 11.84 11.84 42.01 3.67
204 205 3.838795 CAACTGCCTCGCGTACGC 61.839 66.667 29.83 29.83 39.84 4.42
222 223 3.826637 CGTAGCCCGAAAGAAAGGA 57.173 52.632 0.00 0.00 39.56 3.36
223 224 2.088950 CGTAGCCCGAAAGAAAGGAA 57.911 50.000 0.00 0.00 39.56 3.36
224 225 2.419667 CGTAGCCCGAAAGAAAGGAAA 58.580 47.619 0.00 0.00 39.56 3.13
225 226 2.809696 CGTAGCCCGAAAGAAAGGAAAA 59.190 45.455 0.00 0.00 39.56 2.29
226 227 3.251487 CGTAGCCCGAAAGAAAGGAAAAA 59.749 43.478 0.00 0.00 39.56 1.94
227 228 4.612939 CGTAGCCCGAAAGAAAGGAAAAAG 60.613 45.833 0.00 0.00 39.56 2.27
228 229 2.628178 AGCCCGAAAGAAAGGAAAAAGG 59.372 45.455 0.00 0.00 0.00 3.11
229 230 2.364324 GCCCGAAAGAAAGGAAAAAGGT 59.636 45.455 0.00 0.00 0.00 3.50
230 231 3.181469 GCCCGAAAGAAAGGAAAAAGGTT 60.181 43.478 0.00 0.00 0.00 3.50
231 232 4.682320 GCCCGAAAGAAAGGAAAAAGGTTT 60.682 41.667 0.00 0.00 0.00 3.27
232 233 5.047847 CCCGAAAGAAAGGAAAAAGGTTTC 58.952 41.667 0.00 0.00 42.16 2.78
233 234 4.738252 CCGAAAGAAAGGAAAAAGGTTTCG 59.262 41.667 7.20 7.20 43.56 3.46
234 235 4.738252 CGAAAGAAAGGAAAAAGGTTTCGG 59.262 41.667 6.44 0.00 43.56 4.30
235 236 3.728076 AGAAAGGAAAAAGGTTTCGGC 57.272 42.857 0.00 0.00 43.56 5.54
236 237 2.034179 AGAAAGGAAAAAGGTTTCGGCG 59.966 45.455 0.00 0.00 43.56 6.46
237 238 1.682740 AAGGAAAAAGGTTTCGGCGA 58.317 45.000 4.99 4.99 43.56 5.54
238 239 1.235724 AGGAAAAAGGTTTCGGCGAG 58.764 50.000 10.46 0.00 43.56 5.03
239 240 0.240145 GGAAAAAGGTTTCGGCGAGG 59.760 55.000 10.46 0.00 43.56 4.63
240 241 1.232119 GAAAAAGGTTTCGGCGAGGA 58.768 50.000 10.46 0.00 34.17 3.71
241 242 1.197036 GAAAAAGGTTTCGGCGAGGAG 59.803 52.381 10.46 0.00 34.17 3.69
242 243 4.567625 GAAAAAGGTTTCGGCGAGGAGC 62.568 54.545 10.46 12.74 38.36 4.70
856 857 4.072088 CGCCACGACCGCAAGTTC 62.072 66.667 0.00 0.00 0.00 3.01
857 858 3.723348 GCCACGACCGCAAGTTCC 61.723 66.667 0.00 0.00 0.00 3.62
861 869 1.885850 ACGACCGCAAGTTCCACAC 60.886 57.895 0.00 0.00 0.00 3.82
895 903 2.110213 ACCGTTCAGCGAGGCAAA 59.890 55.556 0.00 0.00 44.77 3.68
896 904 2.251642 ACCGTTCAGCGAGGCAAAC 61.252 57.895 0.00 0.00 44.77 2.93
899 907 1.282875 GTTCAGCGAGGCAAACCAC 59.717 57.895 0.00 0.00 39.06 4.16
903 911 2.980233 GCGAGGCAAACCACTGCT 60.980 61.111 0.00 0.00 42.25 4.24
1037 1049 3.777925 CACCGCTTTCGTGCCGAG 61.778 66.667 0.00 0.00 37.14 4.63
1276 1293 3.190878 GCAGGGCGATTTGAGTGG 58.809 61.111 0.00 0.00 0.00 4.00
1277 1294 1.377202 GCAGGGCGATTTGAGTGGA 60.377 57.895 0.00 0.00 0.00 4.02
1278 1295 1.372087 GCAGGGCGATTTGAGTGGAG 61.372 60.000 0.00 0.00 0.00 3.86
1279 1296 0.745845 CAGGGCGATTTGAGTGGAGG 60.746 60.000 0.00 0.00 0.00 4.30
1280 1297 1.201429 AGGGCGATTTGAGTGGAGGT 61.201 55.000 0.00 0.00 0.00 3.85
1281 1298 0.322546 GGGCGATTTGAGTGGAGGTT 60.323 55.000 0.00 0.00 0.00 3.50
1282 1299 0.804989 GGCGATTTGAGTGGAGGTTG 59.195 55.000 0.00 0.00 0.00 3.77
1283 1300 0.169009 GCGATTTGAGTGGAGGTTGC 59.831 55.000 0.00 0.00 0.00 4.17
1284 1301 0.443869 CGATTTGAGTGGAGGTTGCG 59.556 55.000 0.00 0.00 0.00 4.85
1285 1302 0.169009 GATTTGAGTGGAGGTTGCGC 59.831 55.000 0.00 0.00 0.00 6.09
1286 1303 1.577328 ATTTGAGTGGAGGTTGCGCG 61.577 55.000 0.00 0.00 0.00 6.86
1287 1304 2.933878 TTTGAGTGGAGGTTGCGCGT 62.934 55.000 8.43 0.00 0.00 6.01
1288 1305 3.112709 GAGTGGAGGTTGCGCGTC 61.113 66.667 8.43 0.00 0.00 5.19
1293 1310 3.343421 GAGGTTGCGCGTCGGTTT 61.343 61.111 8.43 0.00 0.00 3.27
1294 1311 3.573489 GAGGTTGCGCGTCGGTTTG 62.573 63.158 8.43 0.00 0.00 2.93
1295 1312 4.676586 GGTTGCGCGTCGGTTTGG 62.677 66.667 8.43 0.00 0.00 3.28
1296 1313 3.641986 GTTGCGCGTCGGTTTGGA 61.642 61.111 8.43 0.00 0.00 3.53
1297 1314 2.895865 TTGCGCGTCGGTTTGGAA 60.896 55.556 8.43 0.00 0.00 3.53
1298 1315 2.887889 TTGCGCGTCGGTTTGGAAG 61.888 57.895 8.43 0.00 0.00 3.46
1299 1316 3.039588 GCGCGTCGGTTTGGAAGA 61.040 61.111 8.43 0.00 0.00 2.87
1300 1317 2.600475 GCGCGTCGGTTTGGAAGAA 61.600 57.895 8.43 0.00 0.00 2.52
1301 1318 1.491563 CGCGTCGGTTTGGAAGAAG 59.508 57.895 0.00 0.00 0.00 2.85
1302 1319 0.942410 CGCGTCGGTTTGGAAGAAGA 60.942 55.000 0.00 0.00 0.00 2.87
1303 1320 1.439679 GCGTCGGTTTGGAAGAAGAT 58.560 50.000 0.00 0.00 0.00 2.40
1304 1321 1.804748 GCGTCGGTTTGGAAGAAGATT 59.195 47.619 0.00 0.00 0.00 2.40
1305 1322 2.225727 GCGTCGGTTTGGAAGAAGATTT 59.774 45.455 0.00 0.00 0.00 2.17
1306 1323 3.304458 GCGTCGGTTTGGAAGAAGATTTT 60.304 43.478 0.00 0.00 0.00 1.82
1307 1324 4.219033 CGTCGGTTTGGAAGAAGATTTTG 58.781 43.478 0.00 0.00 0.00 2.44
1308 1325 3.981416 GTCGGTTTGGAAGAAGATTTTGC 59.019 43.478 0.00 0.00 0.00 3.68
1309 1326 3.005367 TCGGTTTGGAAGAAGATTTTGCC 59.995 43.478 0.00 0.00 0.00 4.52
1310 1327 3.317150 GGTTTGGAAGAAGATTTTGCCG 58.683 45.455 0.00 0.00 0.00 5.69
1311 1328 2.723124 TTGGAAGAAGATTTTGCCGC 57.277 45.000 0.00 0.00 0.00 6.53
1312 1329 1.909700 TGGAAGAAGATTTTGCCGCT 58.090 45.000 0.00 0.00 0.00 5.52
1313 1330 2.238521 TGGAAGAAGATTTTGCCGCTT 58.761 42.857 0.00 0.00 0.00 4.68
1321 1338 3.642705 AGATTTTGCCGCTTTCTGTTTC 58.357 40.909 0.00 0.00 0.00 2.78
1366 1383 0.987294 CTCACAGATTCACCCCCAGT 59.013 55.000 0.00 0.00 0.00 4.00
1368 1385 0.692476 CACAGATTCACCCCCAGTCA 59.308 55.000 0.00 0.00 0.00 3.41
1370 1387 1.283029 ACAGATTCACCCCCAGTCATG 59.717 52.381 0.00 0.00 0.00 3.07
1431 1448 2.244510 ACCCCAACCTGATATGATGCAA 59.755 45.455 0.00 0.00 0.00 4.08
1448 1465 1.841556 AACTCTCAAGTGGGGCGGA 60.842 57.895 0.00 0.00 35.36 5.54
1467 1484 4.440802 GCGGACTGAGATTCTGTAGAATGT 60.441 45.833 11.58 7.83 44.14 2.71
1494 1511 2.691927 TGTGCTACTCTGCATTCACAG 58.308 47.619 0.00 0.00 45.23 3.66
1498 1515 2.159043 GCTACTCTGCATTCACAGGCTA 60.159 50.000 0.00 0.00 38.26 3.93
1500 1517 1.905215 ACTCTGCATTCACAGGCTACT 59.095 47.619 0.00 0.00 38.26 2.57
1518 1537 4.439426 GCTACTAGGACTGATGTGACACTG 60.439 50.000 7.20 0.00 0.00 3.66
1539 1558 3.890756 TGTGTTCATGTTGCAGGAGATTT 59.109 39.130 0.00 0.00 0.00 2.17
1543 1562 6.003326 TGTTCATGTTGCAGGAGATTTAGAA 58.997 36.000 0.00 0.00 0.00 2.10
1712 1732 1.064946 GGATGACTGCTCTCGACCG 59.935 63.158 0.00 0.00 0.00 4.79
1840 1860 9.660180 GGAGTAAGATACTTGTTCAATCTCTTT 57.340 33.333 0.00 0.00 39.59 2.52
1860 1881 9.369904 TCTCTTTTCTTCAATTGTTTTTCCTTG 57.630 29.630 5.13 0.00 0.00 3.61
2176 2205 6.426937 AGTTCTGTACGTTGCATAATCTGTTT 59.573 34.615 0.00 0.00 0.00 2.83
2287 2322 4.003648 GGTTGAACCACTAATCTGGTCTG 58.996 47.826 9.98 0.00 44.32 3.51
2288 2323 4.505039 GGTTGAACCACTAATCTGGTCTGT 60.505 45.833 9.98 0.00 44.32 3.41
2289 2324 5.279809 GGTTGAACCACTAATCTGGTCTGTA 60.280 44.000 9.98 0.00 44.32 2.74
2329 2371 4.158394 CCAAACAGGAGGTTATTGGACATG 59.842 45.833 0.00 0.00 38.96 3.21
2345 2387 4.081642 TGGACATGAACTAGTACCTTCAGC 60.082 45.833 0.00 0.00 30.04 4.26
2991 3115 7.394016 TCTTCCATGTTCATCTAACTTGCTAA 58.606 34.615 0.00 0.00 40.30 3.09
3094 3218 5.603596 TCTTTGTTTCTGGCGTAGTCTTAA 58.396 37.500 0.00 0.00 0.00 1.85
3166 3295 9.886132 GTAAGAAGATTGATTTACTCCCACTTA 57.114 33.333 0.00 0.00 0.00 2.24
3213 3347 6.170506 TGTTGCCTTAATGTACTTACTGAGG 58.829 40.000 0.00 0.00 0.00 3.86
3242 3379 9.467258 CTTGTTGTGACATTTCTTGTTGATATT 57.533 29.630 0.00 0.00 39.18 1.28
3243 3380 9.814899 TTGTTGTGACATTTCTTGTTGATATTT 57.185 25.926 0.00 0.00 39.18 1.40
3244 3381 9.814899 TGTTGTGACATTTCTTGTTGATATTTT 57.185 25.926 0.00 0.00 39.18 1.82
3334 3471 4.537015 CAGTACAGATGCATGCATGATTG 58.463 43.478 36.73 29.07 36.70 2.67
3342 3479 5.646793 AGATGCATGCATGATTGGATACTAC 59.353 40.000 36.73 17.18 36.70 2.73
3353 3490 1.691976 TGGATACTACCCCAGATTGCG 59.308 52.381 0.00 0.00 37.61 4.85
3448 3585 6.380846 TGGGGATTCATGGATTTTAAGTTCTG 59.619 38.462 0.00 0.00 0.00 3.02
3634 3772 7.509141 TGTTGAAGATCTGTGCTTTTAATGA 57.491 32.000 0.00 0.00 0.00 2.57
3635 3773 8.114331 TGTTGAAGATCTGTGCTTTTAATGAT 57.886 30.769 0.00 0.00 0.00 2.45
3636 3774 8.579006 TGTTGAAGATCTGTGCTTTTAATGATT 58.421 29.630 0.00 0.00 0.00 2.57
3788 3930 5.648092 GCCATGGTTCTAGACAACATTAAGT 59.352 40.000 14.67 0.00 0.00 2.24
3838 4000 6.884280 AAGAGAAGGTAAACAAATCACAGG 57.116 37.500 0.00 0.00 0.00 4.00
3920 4082 5.990996 ACATTTTTCAGAATTGATGCCGTTT 59.009 32.000 0.00 0.00 32.27 3.60
3921 4083 7.151308 ACATTTTTCAGAATTGATGCCGTTTA 58.849 30.769 0.00 0.00 32.27 2.01
3940 4102 6.038603 CCGTTTATGTGTGAATGGATGAAGAT 59.961 38.462 0.00 0.00 33.05 2.40
4170 4332 4.164988 CCCTGTGATCTCCCAGTTAAGAAT 59.835 45.833 0.00 0.00 0.00 2.40
4399 4704 3.517901 CCCCTCACAGGTCAAAGTATGTA 59.482 47.826 0.00 0.00 31.93 2.29
4715 5071 5.473504 GTGAAATTACCATGTTCAGTGGAGT 59.526 40.000 0.00 0.00 39.12 3.85
4717 5073 4.908601 ATTACCATGTTCAGTGGAGTCA 57.091 40.909 0.00 0.00 39.12 3.41
4851 5208 3.181461 ACATACCAGGAGTTGCATCTAGC 60.181 47.826 0.00 0.00 45.96 3.42
4855 5212 2.286872 CAGGAGTTGCATCTAGCCTTG 58.713 52.381 0.00 0.00 44.83 3.61
4864 5221 3.194062 GCATCTAGCCTTGTCTTGTCTC 58.806 50.000 0.00 0.00 37.23 3.36
4977 5334 9.639563 TCCATATTTCTTTCATGGTTATAGCAA 57.360 29.630 0.00 0.00 40.18 3.91
5069 5426 3.490348 AGCTGGTTTGCTTCATGTTACT 58.510 40.909 0.00 0.00 40.93 2.24
5317 5674 5.352016 CCTCTTTCTGAGCTTTGATCTTCTG 59.648 44.000 0.00 0.00 41.35 3.02
5413 5770 8.514330 ACTTTGTAGTTTTGGTTCTGTATTGA 57.486 30.769 0.00 0.00 0.00 2.57
5698 6062 7.679783 TCCTCACATTCTCTTCACAATTCTTA 58.320 34.615 0.00 0.00 0.00 2.10
5810 6174 6.766467 ACAAAGAACCACTAGACAGTTTTAGG 59.234 38.462 0.00 0.00 30.46 2.69
5833 6198 7.830739 AGGTGATGGAATTTAACTTTAAGCTG 58.169 34.615 0.00 0.00 0.00 4.24
5987 6353 1.446366 GCAATCCTACCCCTCGTCC 59.554 63.158 0.00 0.00 0.00 4.79
5998 6364 1.038130 CCCTCGTCCGTGGAGATTCT 61.038 60.000 9.22 0.00 33.27 2.40
6021 6387 2.878406 ACACAAAGTCTCGTCCAAATGG 59.122 45.455 0.00 0.00 0.00 3.16
6173 6630 3.381908 ACACCTAGCTGATTTAGGAGACG 59.618 47.826 6.48 0.00 40.12 4.18
6265 6722 3.095332 TGTCCTCCACTCTCAGAATCTG 58.905 50.000 3.38 3.38 0.00 2.90
6348 6805 4.064388 GGAGGAGAGCTCTGAAAATATGC 58.936 47.826 23.91 2.49 0.00 3.14
6378 6835 4.586001 ACTTGGAGCAAATGAGTTGTGAAT 59.414 37.500 0.00 0.00 39.63 2.57
6380 6837 5.125100 TGGAGCAAATGAGTTGTGAATTC 57.875 39.130 0.00 0.00 39.63 2.17
6471 6929 5.577164 CGTTAGACACTAATTAGCACAGCTT 59.423 40.000 12.54 0.00 40.44 3.74
6582 7099 3.307242 CGAGTCCAAAGCCGAAAGAATAG 59.693 47.826 0.00 0.00 0.00 1.73
6626 7143 2.499289 GTCTCTTGGAGGCTCTGAATGA 59.501 50.000 15.23 5.33 30.76 2.57
6652 7169 3.878778 AGTGATATGTCCACAAAGGCTC 58.121 45.455 0.00 0.00 37.01 4.70
6655 7172 2.787473 TATGTCCACAAAGGCTCTGG 57.213 50.000 0.00 0.00 37.29 3.86
6695 7268 3.151022 CTCGGAGGGAGGGTCTGC 61.151 72.222 0.00 0.00 39.22 4.26
6709 7282 1.067212 GGTCTGCACTATACTGGGACG 59.933 57.143 0.00 0.00 0.00 4.79
6771 7348 8.373981 ACATCATTTGGAGGATCTGAACTATAG 58.626 37.037 0.00 0.00 33.73 1.31
6848 7426 2.033151 CGGAGTGTCGGAACTTTGAAAC 60.033 50.000 0.00 0.00 0.00 2.78
6871 7449 0.901124 ACTTAGCTGGCTCAGAGGTG 59.099 55.000 10.28 0.00 32.44 4.00
6937 7519 2.683362 TCTGTAGCTGGATAGTGTCACG 59.317 50.000 0.00 0.00 0.00 4.35
6958 7540 2.307768 CTGAGCATGGCATTTCTCCAT 58.692 47.619 18.45 0.00 44.70 3.41
6961 7543 4.077108 TGAGCATGGCATTTCTCCATATC 58.923 43.478 18.45 0.00 42.11 1.63
6971 7553 6.291377 GCATTTCTCCATATCAGGTGTCTTA 58.709 40.000 0.00 0.00 0.00 2.10
7068 8089 5.690997 TCGCCTTCTGTAGACATAGTATG 57.309 43.478 8.66 8.66 0.00 2.39
7158 8182 3.181469 TGTGAAGTAGGCTGTTCGTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
7232 8256 5.391312 ACCAATTGTAACATCTTTGCTCC 57.609 39.130 4.43 0.00 0.00 4.70
7360 8384 8.085296 CCTTCACTGGTATGTATCTGATACTTC 58.915 40.741 23.96 15.20 36.70 3.01
7364 8388 8.370940 CACTGGTATGTATCTGATACTTCCAAT 58.629 37.037 23.96 16.93 36.70 3.16
7385 8409 6.753279 CCAATTTAATCTGTGGTGCATACTTG 59.247 38.462 0.00 0.00 0.00 3.16
7386 8410 7.315142 CAATTTAATCTGTGGTGCATACTTGT 58.685 34.615 0.00 0.00 0.00 3.16
7387 8411 6.494893 TTTAATCTGTGGTGCATACTTGTC 57.505 37.500 0.00 0.00 0.00 3.18
7479 8510 9.875691 GAAGATTTGTTTTGGGCTTATTTATCT 57.124 29.630 0.00 0.00 0.00 1.98
7489 8520 6.731467 TGGGCTTATTTATCTGAGAAACCTT 58.269 36.000 0.00 0.00 0.00 3.50
7517 8558 5.369993 AGGGGAGGGTCTATTAATTGAGAAC 59.630 44.000 0.00 0.00 0.00 3.01
7571 8624 8.090788 ACCATACACCACTCAGTTAATTAGAT 57.909 34.615 0.00 0.00 0.00 1.98
7572 8625 9.209048 ACCATACACCACTCAGTTAATTAGATA 57.791 33.333 0.00 0.00 0.00 1.98
7668 8816 2.853077 CCCCTTCCCTATTTCTCTTGGT 59.147 50.000 0.00 0.00 0.00 3.67
7770 8918 4.201950 CCGCCTTCTGAAAGTCCAAATATG 60.202 45.833 0.00 0.00 33.76 1.78
7799 8947 3.616821 CCGATCTGAATTAACTGACGCAA 59.383 43.478 0.00 0.00 0.00 4.85
7810 8958 3.784701 ACTGACGCAACCTCTATACAG 57.215 47.619 0.00 0.00 0.00 2.74
7815 8963 3.585862 ACGCAACCTCTATACAGTGTTG 58.414 45.455 0.00 0.00 38.01 3.33
7829 8977 1.137086 AGTGTTGGTATAGAGGCTGCG 59.863 52.381 0.00 0.00 0.00 5.18
7850 8998 3.006967 CGTCTAATTTGGATCGGAGGGAT 59.993 47.826 0.00 0.00 38.35 3.85
8023 9171 2.571212 CTGTTGCTGTTCTGTTACCCA 58.429 47.619 0.00 0.00 0.00 4.51
8053 9201 3.071602 ACCAGTGAGATATTTGGCGCTAT 59.928 43.478 7.64 0.00 33.98 2.97
8358 9506 8.682710 TGTAGTCTTAAATGTTTTCAGTTGCTT 58.317 29.630 0.00 0.00 38.58 3.91
8364 9514 6.515043 AAATGTTTTCAGTTGCTTCAATCG 57.485 33.333 0.00 0.00 36.73 3.34
8783 10000 4.561213 TCGTTGCAGATAATACTTGACACG 59.439 41.667 0.00 0.00 0.00 4.49
9178 10402 4.141801 CCATGTTACCGAAGATGAACCCTA 60.142 45.833 0.00 0.00 0.00 3.53
9221 10475 3.976169 TCTTTTGAACAGGAAAATGCGG 58.024 40.909 0.00 0.00 0.00 5.69
9249 10760 6.154706 AGTTCTAACACATACTCCCTACAAGG 59.845 42.308 0.00 0.00 34.30 3.61
9272 10783 8.473358 AGGTGCTTAGTAAAATAAACCAAGTT 57.527 30.769 0.00 0.00 0.00 2.66
9311 10854 1.762957 TGCTTATCTCTACAGGGGTGC 59.237 52.381 0.00 0.00 0.00 5.01
9329 10872 4.636206 GGGTGCCTAATTAAGAGTCTGTTG 59.364 45.833 0.00 0.00 0.00 3.33
9330 10873 5.246307 GGTGCCTAATTAAGAGTCTGTTGT 58.754 41.667 0.00 0.00 0.00 3.32
9331 10874 6.403878 GGTGCCTAATTAAGAGTCTGTTGTA 58.596 40.000 0.00 0.00 0.00 2.41
9332 10875 7.048512 GGTGCCTAATTAAGAGTCTGTTGTAT 58.951 38.462 0.00 0.00 0.00 2.29
9351 10899 6.252967 TGTATAACAAAATGAGCACTGGTG 57.747 37.500 0.00 0.00 0.00 4.17
9389 10938 7.836842 TGATTTATTTCTTAAAGCACCTTCCC 58.163 34.615 0.00 0.00 40.33 3.97
9396 10945 0.185901 AAAGCACCTTCCCTGAGCAA 59.814 50.000 0.00 0.00 0.00 3.91
9428 10977 4.156455 ACAGGGCATAAGGAACATGTAG 57.844 45.455 0.00 0.00 0.00 2.74
9429 10978 3.780294 ACAGGGCATAAGGAACATGTAGA 59.220 43.478 0.00 0.00 0.00 2.59
9431 10980 3.780294 AGGGCATAAGGAACATGTAGACA 59.220 43.478 0.00 0.00 0.00 3.41
9450 11233 5.491070 AGACATGTGCATACTGTATGTGTT 58.509 37.500 24.32 11.40 38.43 3.32
9474 11269 4.033684 GCATCTTCTTTGTGATCGCATTC 58.966 43.478 10.29 0.00 0.00 2.67
9514 11309 1.192146 CCAGAGGTTCGACCAGGGAA 61.192 60.000 6.78 0.00 41.95 3.97
9629 12681 5.404946 GTGCTGGAACGAACTGTATTACTA 58.595 41.667 0.00 0.00 0.00 1.82
9630 12682 5.287992 GTGCTGGAACGAACTGTATTACTAC 59.712 44.000 0.00 0.00 0.00 2.73
9631 12683 5.184479 TGCTGGAACGAACTGTATTACTACT 59.816 40.000 0.00 0.00 0.00 2.57
9643 12703 8.291191 ACTGTATTACTACTTACTGGAAGGAC 57.709 38.462 4.37 0.00 39.74 3.85
9754 12816 1.738030 GCAAGCCACATTGATCAAGGC 60.738 52.381 23.20 23.20 45.54 4.35
9758 12820 1.452110 CCACATTGATCAAGGCGACA 58.548 50.000 19.47 0.00 0.00 4.35
9772 12834 3.567797 GACATGCTTCGCCCTCGC 61.568 66.667 0.00 0.00 35.26 5.03
9802 12865 1.447317 GGCACCGATAACATGGCAGG 61.447 60.000 0.00 0.00 38.69 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 9.224267 TCACAAAATTCAAAAAGGTTCATGAAA 57.776 25.926 10.35 0.00 35.62 2.69
58 59 8.783833 TCACAAAATTCAAAAAGGTTCATGAA 57.216 26.923 3.38 3.38 36.35 2.57
59 60 8.663911 GTTCACAAAATTCAAAAAGGTTCATGA 58.336 29.630 0.00 0.00 0.00 3.07
60 61 8.667463 AGTTCACAAAATTCAAAAAGGTTCATG 58.333 29.630 0.00 0.00 0.00 3.07
61 62 8.791327 AGTTCACAAAATTCAAAAAGGTTCAT 57.209 26.923 0.00 0.00 0.00 2.57
62 63 8.614469 AAGTTCACAAAATTCAAAAAGGTTCA 57.386 26.923 0.00 0.00 0.00 3.18
63 64 9.891828 AAAAGTTCACAAAATTCAAAAAGGTTC 57.108 25.926 0.00 0.00 0.00 3.62
64 65 9.891828 GAAAAGTTCACAAAATTCAAAAAGGTT 57.108 25.926 0.00 0.00 0.00 3.50
65 66 9.061435 TGAAAAGTTCACAAAATTCAAAAAGGT 57.939 25.926 0.00 0.00 34.08 3.50
66 67 9.890352 TTGAAAAGTTCACAAAATTCAAAAAGG 57.110 25.926 0.00 0.00 39.87 3.11
91 92 9.224058 CGCAAAAATGAAAAACTTCATGAATTT 57.776 25.926 8.96 6.93 40.51 1.82
92 93 8.610896 TCGCAAAAATGAAAAACTTCATGAATT 58.389 25.926 8.96 0.00 40.51 2.17
93 94 8.140677 TCGCAAAAATGAAAAACTTCATGAAT 57.859 26.923 8.96 0.00 40.51 2.57
94 95 7.277539 ACTCGCAAAAATGAAAAACTTCATGAA 59.722 29.630 8.12 8.12 40.51 2.57
95 96 6.756074 ACTCGCAAAAATGAAAAACTTCATGA 59.244 30.769 1.30 0.00 40.51 3.07
96 97 6.936374 ACTCGCAAAAATGAAAAACTTCATG 58.064 32.000 1.30 0.00 40.51 3.07
97 98 7.538303 AACTCGCAAAAATGAAAAACTTCAT 57.462 28.000 0.00 0.00 43.00 2.57
98 99 6.959671 AACTCGCAAAAATGAAAAACTTCA 57.040 29.167 0.00 0.00 35.15 3.02
99 100 8.653984 AAAAACTCGCAAAAATGAAAAACTTC 57.346 26.923 0.00 0.00 0.00 3.01
142 143 6.093495 ACGTCAATCTCAAGAGTTCACAAAAA 59.907 34.615 0.00 0.00 0.00 1.94
143 144 5.584649 ACGTCAATCTCAAGAGTTCACAAAA 59.415 36.000 0.00 0.00 0.00 2.44
144 145 5.006649 CACGTCAATCTCAAGAGTTCACAAA 59.993 40.000 0.00 0.00 0.00 2.83
145 146 4.507756 CACGTCAATCTCAAGAGTTCACAA 59.492 41.667 0.00 0.00 0.00 3.33
146 147 4.051237 CACGTCAATCTCAAGAGTTCACA 58.949 43.478 0.00 0.00 0.00 3.58
147 148 4.051922 ACACGTCAATCTCAAGAGTTCAC 58.948 43.478 0.00 0.00 0.00 3.18
148 149 4.322080 ACACGTCAATCTCAAGAGTTCA 57.678 40.909 0.00 0.00 0.00 3.18
149 150 5.921408 ACTTACACGTCAATCTCAAGAGTTC 59.079 40.000 0.00 0.00 0.00 3.01
150 151 5.844004 ACTTACACGTCAATCTCAAGAGTT 58.156 37.500 0.00 0.00 0.00 3.01
151 152 5.455056 ACTTACACGTCAATCTCAAGAGT 57.545 39.130 0.00 0.00 0.00 3.24
152 153 6.771188 AAACTTACACGTCAATCTCAAGAG 57.229 37.500 0.00 0.00 0.00 2.85
153 154 6.074516 CGAAAACTTACACGTCAATCTCAAGA 60.075 38.462 0.00 0.00 0.00 3.02
154 155 6.065153 CGAAAACTTACACGTCAATCTCAAG 58.935 40.000 0.00 0.00 0.00 3.02
155 156 5.521010 ACGAAAACTTACACGTCAATCTCAA 59.479 36.000 0.00 0.00 33.80 3.02
156 157 5.045215 ACGAAAACTTACACGTCAATCTCA 58.955 37.500 0.00 0.00 33.80 3.27
157 158 5.051240 ACACGAAAACTTACACGTCAATCTC 60.051 40.000 0.00 0.00 36.86 2.75
158 159 4.807304 ACACGAAAACTTACACGTCAATCT 59.193 37.500 0.00 0.00 36.86 2.40
159 160 4.896238 CACACGAAAACTTACACGTCAATC 59.104 41.667 0.00 0.00 36.86 2.67
160 161 4.784079 GCACACGAAAACTTACACGTCAAT 60.784 41.667 0.00 0.00 36.86 2.57
161 162 3.483901 GCACACGAAAACTTACACGTCAA 60.484 43.478 0.00 0.00 36.86 3.18
162 163 2.029486 GCACACGAAAACTTACACGTCA 59.971 45.455 0.00 0.00 36.86 4.35
163 164 2.621587 GCACACGAAAACTTACACGTC 58.378 47.619 0.00 0.00 36.86 4.34
164 165 1.005766 CGCACACGAAAACTTACACGT 60.006 47.619 0.00 0.00 43.93 4.49
165 166 1.643298 CGCACACGAAAACTTACACG 58.357 50.000 0.00 0.00 43.93 4.49
177 178 2.052237 GGCAGTTGTTCGCACACG 60.052 61.111 0.00 0.00 42.01 4.49
178 179 1.279840 GAGGCAGTTGTTCGCACAC 59.720 57.895 0.00 0.00 30.32 3.82
179 180 2.243957 CGAGGCAGTTGTTCGCACA 61.244 57.895 0.00 0.00 0.00 4.57
180 181 2.551270 CGAGGCAGTTGTTCGCAC 59.449 61.111 0.00 0.00 0.00 5.34
183 184 1.731613 TACGCGAGGCAGTTGTTCG 60.732 57.895 15.93 4.55 37.40 3.95
184 185 1.779683 GTACGCGAGGCAGTTGTTC 59.220 57.895 15.93 0.00 0.00 3.18
185 186 2.019951 CGTACGCGAGGCAGTTGTT 61.020 57.895 15.93 0.00 41.33 2.83
186 187 2.430244 CGTACGCGAGGCAGTTGT 60.430 61.111 15.93 0.00 41.33 3.32
187 188 3.838795 GCGTACGCGAGGCAGTTG 61.839 66.667 26.17 0.00 41.33 3.16
197 198 4.834892 TTCGGGCTACGCGTACGC 62.835 66.667 29.83 29.83 45.53 4.42
199 200 0.456653 TTCTTTCGGGCTACGCGTAC 60.457 55.000 16.41 12.19 43.86 3.67
200 201 0.243365 TTTCTTTCGGGCTACGCGTA 59.757 50.000 19.40 19.40 43.86 4.42
201 202 1.005867 TTTCTTTCGGGCTACGCGT 60.006 52.632 19.17 19.17 43.86 6.01
202 203 1.693083 CCTTTCTTTCGGGCTACGCG 61.693 60.000 3.53 3.53 43.86 6.01
203 204 0.390735 TCCTTTCTTTCGGGCTACGC 60.391 55.000 0.00 0.00 43.86 4.42
204 205 2.088950 TTCCTTTCTTTCGGGCTACG 57.911 50.000 0.00 0.00 46.11 3.51
205 206 4.321008 CCTTTTTCCTTTCTTTCGGGCTAC 60.321 45.833 0.00 0.00 0.00 3.58
206 207 3.824443 CCTTTTTCCTTTCTTTCGGGCTA 59.176 43.478 0.00 0.00 0.00 3.93
207 208 2.628178 CCTTTTTCCTTTCTTTCGGGCT 59.372 45.455 0.00 0.00 0.00 5.19
208 209 2.364324 ACCTTTTTCCTTTCTTTCGGGC 59.636 45.455 0.00 0.00 0.00 6.13
209 210 4.665833 AACCTTTTTCCTTTCTTTCGGG 57.334 40.909 0.00 0.00 0.00 5.14
210 211 4.738252 CGAAACCTTTTTCCTTTCTTTCGG 59.262 41.667 0.00 0.00 38.35 4.30
211 212 4.738252 CCGAAACCTTTTTCCTTTCTTTCG 59.262 41.667 0.00 0.00 38.35 3.46
212 213 4.506654 GCCGAAACCTTTTTCCTTTCTTTC 59.493 41.667 0.00 0.00 38.35 2.62
213 214 4.439057 GCCGAAACCTTTTTCCTTTCTTT 58.561 39.130 0.00 0.00 38.35 2.52
214 215 3.490249 CGCCGAAACCTTTTTCCTTTCTT 60.490 43.478 0.00 0.00 38.35 2.52
215 216 2.034179 CGCCGAAACCTTTTTCCTTTCT 59.966 45.455 0.00 0.00 38.35 2.52
216 217 2.033675 TCGCCGAAACCTTTTTCCTTTC 59.966 45.455 0.00 0.00 38.35 2.62
217 218 2.025898 TCGCCGAAACCTTTTTCCTTT 58.974 42.857 0.00 0.00 38.35 3.11
218 219 1.607148 CTCGCCGAAACCTTTTTCCTT 59.393 47.619 0.00 0.00 38.35 3.36
219 220 1.235724 CTCGCCGAAACCTTTTTCCT 58.764 50.000 0.00 0.00 38.35 3.36
220 221 0.240145 CCTCGCCGAAACCTTTTTCC 59.760 55.000 0.00 0.00 38.35 3.13
221 222 1.197036 CTCCTCGCCGAAACCTTTTTC 59.803 52.381 0.00 0.00 38.23 2.29
222 223 1.235724 CTCCTCGCCGAAACCTTTTT 58.764 50.000 0.00 0.00 0.00 1.94
223 224 1.235281 GCTCCTCGCCGAAACCTTTT 61.235 55.000 0.00 0.00 0.00 2.27
224 225 1.671379 GCTCCTCGCCGAAACCTTT 60.671 57.895 0.00 0.00 0.00 3.11
225 226 2.047179 GCTCCTCGCCGAAACCTT 60.047 61.111 0.00 0.00 0.00 3.50
857 858 2.299013 TGGCTAGTGTACTCCAAGTGTG 59.701 50.000 0.00 0.00 0.00 3.82
861 869 1.135083 CGGTGGCTAGTGTACTCCAAG 60.135 57.143 0.00 0.00 0.00 3.61
867 875 1.992170 CTGAACGGTGGCTAGTGTAC 58.008 55.000 0.00 0.00 0.00 2.90
918 926 1.884235 CGTCTCTGGTTTTTGCTCCT 58.116 50.000 0.00 0.00 0.00 3.69
924 932 0.661020 CCGTTGCGTCTCTGGTTTTT 59.339 50.000 0.00 0.00 0.00 1.94
1276 1293 3.343421 AAACCGACGCGCAACCTC 61.343 61.111 5.73 0.00 0.00 3.85
1277 1294 3.645975 CAAACCGACGCGCAACCT 61.646 61.111 5.73 0.00 0.00 3.50
1278 1295 4.676586 CCAAACCGACGCGCAACC 62.677 66.667 5.73 0.00 0.00 3.77
1279 1296 3.170810 TTCCAAACCGACGCGCAAC 62.171 57.895 5.73 0.00 0.00 4.17
1280 1297 2.887889 CTTCCAAACCGACGCGCAA 61.888 57.895 5.73 0.00 0.00 4.85
1281 1298 3.342627 CTTCCAAACCGACGCGCA 61.343 61.111 5.73 0.00 0.00 6.09
1282 1299 2.494504 CTTCTTCCAAACCGACGCGC 62.495 60.000 5.73 0.00 0.00 6.86
1283 1300 0.942410 TCTTCTTCCAAACCGACGCG 60.942 55.000 3.53 3.53 0.00 6.01
1284 1301 1.439679 ATCTTCTTCCAAACCGACGC 58.560 50.000 0.00 0.00 0.00 5.19
1285 1302 4.219033 CAAAATCTTCTTCCAAACCGACG 58.781 43.478 0.00 0.00 0.00 5.12
1286 1303 3.981416 GCAAAATCTTCTTCCAAACCGAC 59.019 43.478 0.00 0.00 0.00 4.79
1287 1304 3.005367 GGCAAAATCTTCTTCCAAACCGA 59.995 43.478 0.00 0.00 0.00 4.69
1288 1305 3.317150 GGCAAAATCTTCTTCCAAACCG 58.683 45.455 0.00 0.00 0.00 4.44
1289 1306 3.317150 CGGCAAAATCTTCTTCCAAACC 58.683 45.455 0.00 0.00 0.00 3.27
1290 1307 2.731451 GCGGCAAAATCTTCTTCCAAAC 59.269 45.455 0.00 0.00 0.00 2.93
1291 1308 2.627699 AGCGGCAAAATCTTCTTCCAAA 59.372 40.909 1.45 0.00 0.00 3.28
1292 1309 2.238521 AGCGGCAAAATCTTCTTCCAA 58.761 42.857 1.45 0.00 0.00 3.53
1293 1310 1.909700 AGCGGCAAAATCTTCTTCCA 58.090 45.000 1.45 0.00 0.00 3.53
1294 1311 3.057245 AGAAAGCGGCAAAATCTTCTTCC 60.057 43.478 1.45 0.00 0.00 3.46
1295 1312 3.916776 CAGAAAGCGGCAAAATCTTCTTC 59.083 43.478 1.45 0.00 0.00 2.87
1296 1313 3.319122 ACAGAAAGCGGCAAAATCTTCTT 59.681 39.130 1.45 0.00 0.00 2.52
1297 1314 2.887152 ACAGAAAGCGGCAAAATCTTCT 59.113 40.909 1.45 0.00 0.00 2.85
1298 1315 3.288809 ACAGAAAGCGGCAAAATCTTC 57.711 42.857 1.45 0.00 0.00 2.87
1299 1316 3.733443 AACAGAAAGCGGCAAAATCTT 57.267 38.095 1.45 0.00 0.00 2.40
1300 1317 3.642705 GAAACAGAAAGCGGCAAAATCT 58.357 40.909 1.45 0.00 0.00 2.40
1301 1318 2.405025 CGAAACAGAAAGCGGCAAAATC 59.595 45.455 1.45 0.00 0.00 2.17
1302 1319 2.034053 TCGAAACAGAAAGCGGCAAAAT 59.966 40.909 1.45 0.00 0.00 1.82
1303 1320 1.402259 TCGAAACAGAAAGCGGCAAAA 59.598 42.857 1.45 0.00 0.00 2.44
1304 1321 1.018148 TCGAAACAGAAAGCGGCAAA 58.982 45.000 1.45 0.00 0.00 3.68
1305 1322 1.234821 ATCGAAACAGAAAGCGGCAA 58.765 45.000 1.45 0.00 0.00 4.52
1306 1323 1.069296 CAATCGAAACAGAAAGCGGCA 60.069 47.619 1.45 0.00 0.00 5.69
1307 1324 1.196808 TCAATCGAAACAGAAAGCGGC 59.803 47.619 0.00 0.00 0.00 6.53
1308 1325 3.186409 TCTTCAATCGAAACAGAAAGCGG 59.814 43.478 0.00 0.00 0.00 5.52
1309 1326 4.389664 TCTTCAATCGAAACAGAAAGCG 57.610 40.909 0.00 0.00 0.00 4.68
1310 1327 6.638468 ACATTTCTTCAATCGAAACAGAAAGC 59.362 34.615 14.16 0.00 33.64 3.51
1311 1328 9.322776 CTACATTTCTTCAATCGAAACAGAAAG 57.677 33.333 14.16 10.34 33.64 2.62
1312 1329 8.836413 ACTACATTTCTTCAATCGAAACAGAAA 58.164 29.630 12.23 12.23 33.64 2.52
1313 1330 8.378172 ACTACATTTCTTCAATCGAAACAGAA 57.622 30.769 0.00 0.00 33.64 3.02
1321 1338 8.747666 GCTAGAGTTACTACATTTCTTCAATCG 58.252 37.037 0.00 0.00 0.00 3.34
1366 1383 0.317799 AAAACCAAGCATGCGCATGA 59.682 45.000 45.47 12.07 39.19 3.07
1368 1385 0.604578 AGAAAACCAAGCATGCGCAT 59.395 45.000 19.28 19.28 42.27 4.73
1370 1387 0.039256 TCAGAAAACCAAGCATGCGC 60.039 50.000 13.01 0.00 38.99 6.09
1431 1448 2.203788 TCCGCCCCACTTGAGAGT 60.204 61.111 0.00 0.00 36.25 3.24
1448 1465 6.047511 AGCAACATTCTACAGAATCTCAGT 57.952 37.500 1.40 0.00 42.41 3.41
1467 1484 3.333029 TGCAGAGTAGCACATTAGCAA 57.667 42.857 0.00 0.00 40.11 3.91
1494 1511 3.024547 TGTCACATCAGTCCTAGTAGCC 58.975 50.000 0.00 0.00 0.00 3.93
1498 1515 3.256879 CACAGTGTCACATCAGTCCTAGT 59.743 47.826 5.62 0.00 0.00 2.57
1500 1517 3.230976 ACACAGTGTCACATCAGTCCTA 58.769 45.455 0.00 0.00 0.00 2.94
1518 1537 4.510038 AAATCTCCTGCAACATGAACAC 57.490 40.909 0.00 0.00 0.00 3.32
1539 1558 5.720041 AGTTCACCACCACTATTAGCTTCTA 59.280 40.000 0.00 0.00 0.00 2.10
1543 1562 3.583086 ACAGTTCACCACCACTATTAGCT 59.417 43.478 0.00 0.00 0.00 3.32
1712 1732 3.350219 ACTGTGGACCATACAATGTCC 57.650 47.619 0.00 1.76 36.58 4.02
1730 1750 2.599757 GCTCCCACCCCGGTAAACT 61.600 63.158 0.00 0.00 0.00 2.66
1840 1860 7.678947 TTTGCAAGGAAAAACAATTGAAGAA 57.321 28.000 13.59 0.00 0.00 2.52
1860 1881 2.477754 GTGCCAGAAAAGAAGCATTTGC 59.522 45.455 0.00 0.00 37.60 3.68
1937 1958 4.219944 AGACAATGACAGTACCATACACGT 59.780 41.667 0.00 0.00 0.00 4.49
2070 2092 8.583296 CATCAGATGTAGACCATAAGATCTCAA 58.417 37.037 1.74 0.00 32.56 3.02
2322 2364 4.081642 GCTGAAGGTACTAGTTCATGTCCA 60.082 45.833 0.00 0.00 38.49 4.02
2329 2371 3.955650 TGTGGCTGAAGGTACTAGTTC 57.044 47.619 0.00 0.00 38.49 3.01
2345 2387 5.088739 GTCTGAAATGTCGCTATTTTGTGG 58.911 41.667 0.00 0.00 30.78 4.17
2795 2919 4.777896 AGTAGCAAGTCATACCAAGGAAGA 59.222 41.667 0.00 0.00 0.00 2.87
2813 2937 8.137437 ACATGCCATTCAATATGTTTTAGTAGC 58.863 33.333 0.00 0.00 30.05 3.58
2921 3045 7.349412 ACTAGTGTAGAGACAGAAAACAAGT 57.651 36.000 0.00 0.00 35.82 3.16
2922 3046 9.915629 ATAACTAGTGTAGAGACAGAAAACAAG 57.084 33.333 0.00 0.00 35.82 3.16
2991 3115 5.302568 TCAATGGAAAATCTTGCACAGAGTT 59.697 36.000 5.98 5.98 41.71 3.01
3213 3347 7.195646 TCAACAAGAAATGTCACAACAAGATC 58.804 34.615 0.00 0.00 42.99 2.75
3242 3379 5.437060 ACTCAACAGCAGAAGGAGTTAAAA 58.563 37.500 0.00 0.00 35.41 1.52
3243 3380 5.036117 ACTCAACAGCAGAAGGAGTTAAA 57.964 39.130 0.00 0.00 35.41 1.52
3244 3381 4.689612 ACTCAACAGCAGAAGGAGTTAA 57.310 40.909 0.00 0.00 35.41 2.01
3245 3382 5.304614 AGTTACTCAACAGCAGAAGGAGTTA 59.695 40.000 0.00 0.00 39.39 2.24
3250 3387 3.995199 TCAGTTACTCAACAGCAGAAGG 58.005 45.455 0.00 0.00 37.10 3.46
3334 3471 1.968493 TCGCAATCTGGGGTAGTATCC 59.032 52.381 0.00 0.00 0.00 2.59
3342 3479 1.089920 CAAAGACTCGCAATCTGGGG 58.910 55.000 0.00 0.00 0.00 4.96
3353 3490 6.385033 CCATTTTCAGGTCATTCAAAGACTC 58.615 40.000 0.00 0.00 36.29 3.36
3730 3868 7.658525 TGAACCATATTTCAGTGCCATAAAT 57.341 32.000 0.00 0.00 31.68 1.40
3838 4000 3.918591 CACTGACTCAATCAAAGCATTGC 59.081 43.478 0.00 0.00 36.69 3.56
3920 4082 5.824097 CACCATCTTCATCCATTCACACATA 59.176 40.000 0.00 0.00 0.00 2.29
3921 4083 4.643334 CACCATCTTCATCCATTCACACAT 59.357 41.667 0.00 0.00 0.00 3.21
3940 4102 3.317280 CCTAGGGTAGAAGGCACCA 57.683 57.895 0.00 0.00 37.84 4.17
3977 4139 3.506743 TCTTTGGCCCTGCACCCA 61.507 61.111 0.00 0.00 0.00 4.51
4035 4197 3.118531 AGCCCCAGACTGAAGATAACAT 58.881 45.455 3.32 0.00 0.00 2.71
4079 4241 2.407428 CGTCCACGAGCTGCTAGGA 61.407 63.158 14.25 13.20 43.02 2.94
4363 4668 1.144913 TGAGGGGCAACAACTAGCTTT 59.855 47.619 0.00 0.00 39.74 3.51
4399 4704 1.021968 GAGCTGTTTGGACGTTTGGT 58.978 50.000 0.00 0.00 0.00 3.67
4584 4940 5.246981 ACATCTCCTTCATGAAACCTTCA 57.753 39.130 9.88 0.00 45.01 3.02
4585 4941 5.163814 CGAACATCTCCTTCATGAAACCTTC 60.164 44.000 9.88 3.35 0.00 3.46
4586 4942 4.697352 CGAACATCTCCTTCATGAAACCTT 59.303 41.667 9.88 0.00 0.00 3.50
4587 4943 4.256920 CGAACATCTCCTTCATGAAACCT 58.743 43.478 9.88 0.00 0.00 3.50
4588 4944 4.003648 ACGAACATCTCCTTCATGAAACC 58.996 43.478 9.88 0.00 0.00 3.27
4589 4945 4.932200 AGACGAACATCTCCTTCATGAAAC 59.068 41.667 9.88 0.00 0.00 2.78
4590 4946 5.047021 AGAGACGAACATCTCCTTCATGAAA 60.047 40.000 9.88 0.00 45.43 2.69
4591 4947 4.464244 AGAGACGAACATCTCCTTCATGAA 59.536 41.667 8.12 8.12 45.43 2.57
4851 5208 2.630098 TGGACTCAGAGACAAGACAAGG 59.370 50.000 3.79 0.00 0.00 3.61
4855 5212 4.329462 AAACTGGACTCAGAGACAAGAC 57.671 45.455 10.91 0.00 43.49 3.01
4864 5221 7.391554 TCAATGGAAGATAAAAACTGGACTCAG 59.608 37.037 0.00 0.00 46.10 3.35
4942 5299 9.236691 CCATGAAAGAAATATGGAAAACATACG 57.763 33.333 0.00 0.00 44.41 3.06
4977 5334 6.493115 TGATGACCCACAAAATTGTAGATGTT 59.507 34.615 0.00 0.00 39.91 2.71
5069 5426 8.978874 ATATATCAAGCACATTAGTTGTTCCA 57.021 30.769 0.00 0.00 36.00 3.53
5149 5506 3.627577 ACTCACACATCACAGAAACCAAC 59.372 43.478 0.00 0.00 0.00 3.77
5413 5770 6.015918 TGAAACCATGGGTGAAGATTAATGT 58.984 36.000 18.09 0.00 35.34 2.71
5528 5885 8.871125 AGGACAGAAGAAGAATACAAGAGTTAA 58.129 33.333 0.00 0.00 0.00 2.01
5530 5887 7.309770 AGGACAGAAGAAGAATACAAGAGTT 57.690 36.000 0.00 0.00 0.00 3.01
5545 5909 7.926555 ACCGATAAACATACATAAGGACAGAAG 59.073 37.037 0.00 0.00 0.00 2.85
5614 5978 0.752054 CCAACCAAGCAAGAGCCAAA 59.248 50.000 0.00 0.00 43.56 3.28
5646 6010 3.306019 GGGTAAGTTTTCATGGGCAACTG 60.306 47.826 6.03 0.00 31.00 3.16
5647 6011 2.897326 GGGTAAGTTTTCATGGGCAACT 59.103 45.455 0.00 0.00 31.90 3.16
5649 6013 2.630580 GTGGGTAAGTTTTCATGGGCAA 59.369 45.455 0.00 0.00 0.00 4.52
5698 6062 1.308998 CCTTTTGTTCGACAGCTGGT 58.691 50.000 19.93 3.31 0.00 4.00
5810 6174 7.090173 TGCAGCTTAAAGTTAAATTCCATCAC 58.910 34.615 0.00 0.00 0.00 3.06
5927 6292 1.606224 GCAAATCCTTGTGTTGGCTGG 60.606 52.381 0.00 0.00 34.79 4.85
5987 6353 3.393800 ACTTTGTGTCAGAATCTCCACG 58.606 45.455 5.47 0.00 0.00 4.94
5998 6364 5.510889 CCATTTGGACGAGACTTTGTGTCA 61.511 45.833 0.00 0.00 42.18 3.58
6021 6387 2.303175 TGTGTCCTAAACCTTTGTGGC 58.697 47.619 0.00 0.00 40.22 5.01
6160 6617 0.459585 GGTGCGCGTCTCCTAAATCA 60.460 55.000 8.43 0.00 0.00 2.57
6173 6630 0.386113 TGTTACTTTTTGGGGTGCGC 59.614 50.000 0.00 0.00 0.00 6.09
6265 6722 3.269906 TCCTACCCTAGATCCATCCTAGC 59.730 52.174 0.00 0.00 33.91 3.42
6348 6805 4.038402 ACTCATTTGCTCCAAGTTTCAAGG 59.962 41.667 0.00 0.00 0.00 3.61
6378 6835 2.942804 TGTGCCAAGTCATTCCAAGAA 58.057 42.857 0.00 0.00 0.00 2.52
6380 6837 3.006110 ACATTGTGCCAAGTCATTCCAAG 59.994 43.478 0.00 0.00 0.00 3.61
6471 6929 2.837031 GATTTTGCCCGGAGCCTCCA 62.837 60.000 12.13 0.00 42.71 3.86
6611 7128 1.956869 TCCTTCATTCAGAGCCTCCA 58.043 50.000 0.00 0.00 0.00 3.86
6626 7143 5.256474 CCTTTGTGGACATATCACTTCCTT 58.744 41.667 0.00 0.00 38.35 3.36
6695 7268 0.389391 CCCTGCGTCCCAGTATAGTG 59.611 60.000 0.09 0.09 40.06 2.74
6709 7282 0.457443 GGCAGTAGCAAAATCCCTGC 59.543 55.000 0.00 0.00 45.93 4.85
6741 7318 3.066342 CAGATCCTCCAAATGATGTGTGC 59.934 47.826 0.00 0.00 30.10 4.57
6771 7348 5.376854 AGTAGCAAAATCATGTGTTCCAC 57.623 39.130 0.00 0.00 34.56 4.02
6848 7426 2.354259 CTCTGAGCCAGCTAAGTTTGG 58.646 52.381 3.91 0.00 37.53 3.28
6937 7519 0.384669 GGAGAAATGCCATGCTCAGC 59.615 55.000 9.27 0.00 0.00 4.26
6971 7553 8.554490 AGGACTGGAATATACTTAGTGTCATT 57.446 34.615 0.00 0.00 0.00 2.57
6977 7559 7.620094 ACAACTGAGGACTGGAATATACTTAGT 59.380 37.037 0.00 0.00 0.00 2.24
7098 8121 6.940298 GGAGCCTACATAACAATTATGGCTAA 59.060 38.462 12.06 0.00 45.67 3.09
7114 8138 4.989458 TCCAACTGGGAGCCTACA 57.011 55.556 0.00 0.00 42.15 2.74
7232 8256 3.748083 AGGCATTACACTGGATATGCAG 58.252 45.455 21.44 21.44 43.89 4.41
7237 8261 4.101585 CCTGAGAAGGCATTACACTGGATA 59.898 45.833 0.00 0.00 0.00 2.59
7360 8384 6.455360 AGTATGCACCACAGATTAAATTGG 57.545 37.500 0.00 0.00 35.06 3.16
7364 8388 6.237901 AGACAAGTATGCACCACAGATTAAA 58.762 36.000 0.00 0.00 0.00 1.52
7386 8410 9.645059 GCATGATGAGCTAAGTAACATATAAGA 57.355 33.333 0.00 0.00 0.00 2.10
7387 8411 9.428097 TGCATGATGAGCTAAGTAACATATAAG 57.572 33.333 0.00 0.00 0.00 1.73
7479 8510 1.705186 CTCCCCTTCCAAGGTTTCTCA 59.295 52.381 4.63 0.00 44.98 3.27
7489 8520 3.807288 TTAATAGACCCTCCCCTTCCA 57.193 47.619 0.00 0.00 0.00 3.53
7517 8558 2.568623 AAACAGGGCCAACTCTACTG 57.431 50.000 6.18 2.81 35.40 2.74
7571 8624 1.003812 AGCCACGTTGCCCAGTTTATA 59.996 47.619 8.18 0.00 0.00 0.98
7572 8625 0.251165 AGCCACGTTGCCCAGTTTAT 60.251 50.000 8.18 0.00 0.00 1.40
7668 8816 1.949799 AGTGGGGCCAATTGCAAATA 58.050 45.000 4.39 0.00 43.89 1.40
7770 8918 3.070302 AGTTAATTCAGATCGGAGGGAGC 59.930 47.826 0.00 0.00 0.00 4.70
7810 8958 1.134788 ACGCAGCCTCTATACCAACAC 60.135 52.381 0.00 0.00 0.00 3.32
7815 8963 4.522722 AATTAGACGCAGCCTCTATACC 57.477 45.455 2.35 0.00 0.00 2.73
7822 8970 2.565841 GATCCAAATTAGACGCAGCCT 58.434 47.619 0.00 0.00 0.00 4.58
7829 8977 4.625607 ATCCCTCCGATCCAAATTAGAC 57.374 45.455 0.00 0.00 0.00 2.59
7850 8998 6.377996 GCCCAATGATATGCAGGAATATGTAA 59.622 38.462 0.00 0.00 0.00 2.41
8002 9150 1.266989 GGGTAACAGAACAGCAACAGC 59.733 52.381 0.00 0.00 39.74 4.40
8023 9171 5.653769 CCAAATATCTCACTGGTCCATTTGT 59.346 40.000 8.69 0.00 32.59 2.83
8033 9181 5.679734 AAATAGCGCCAAATATCTCACTG 57.320 39.130 2.29 0.00 0.00 3.66
8053 9201 9.077885 AGCAACAAGAGTTTTTATGAGGATAAA 57.922 29.630 0.00 0.00 35.28 1.40
8352 9500 1.055338 GCAACAGCGATTGAAGCAAC 58.945 50.000 7.12 0.00 37.01 4.17
8364 9514 2.287009 ACTTGAGTTTAAGCGCAACAGC 60.287 45.455 11.47 2.72 37.41 4.40
8696 9846 6.260714 GGAAACAAGTTCAATTTTTCCAGCAT 59.739 34.615 9.64 0.00 43.19 3.79
8748 9898 5.751243 ATCTGCAACGAAACAAGTTAAGT 57.249 34.783 0.00 0.00 0.00 2.24
8749 9899 9.262472 GTATTATCTGCAACGAAACAAGTTAAG 57.738 33.333 0.00 0.00 0.00 1.85
8783 10000 1.443194 CGCTGCCATGTTGCTTGTC 60.443 57.895 0.00 0.00 0.00 3.18
9221 10475 5.662674 AGGGAGTATGTGTTAGAACTGTC 57.337 43.478 0.00 0.00 0.00 3.51
9383 10932 0.538057 TGCAAGTTGCTCAGGGAAGG 60.538 55.000 27.17 0.00 45.31 3.46
9389 10938 3.365666 CCTGTACAATGCAAGTTGCTCAG 60.366 47.826 27.17 21.13 45.31 3.35
9396 10945 2.220653 ATGCCCTGTACAATGCAAGT 57.779 45.000 19.31 5.16 37.27 3.16
9410 10959 4.150897 TGTCTACATGTTCCTTATGCCC 57.849 45.455 2.30 0.00 0.00 5.36
9428 10977 5.801350 AACACATACAGTATGCACATGTC 57.199 39.130 18.99 0.00 42.53 3.06
9429 10978 5.619757 GCAAACACATACAGTATGCACATGT 60.620 40.000 18.99 13.10 42.53 3.21
9431 10980 4.458642 TGCAAACACATACAGTATGCACAT 59.541 37.500 18.99 2.67 42.53 3.21
9450 11233 2.813172 TGCGATCACAAAGAAGATGCAA 59.187 40.909 0.00 0.00 30.83 4.08
9474 11269 1.205655 TCTCGATGGTTTGGCAGAGAG 59.794 52.381 0.00 0.00 31.93 3.20
9514 11309 1.285962 CCAGGGGATTTGATCACTGGT 59.714 52.381 16.13 0.00 44.34 4.00
9574 11369 2.227194 GTCTGGTGTGTAGTTTTGGGG 58.773 52.381 0.00 0.00 0.00 4.96
9629 12681 7.124052 TGTATAGCTAAGTCCTTCCAGTAAGT 58.876 38.462 0.00 0.00 32.89 2.24
9630 12682 7.255660 CCTGTATAGCTAAGTCCTTCCAGTAAG 60.256 44.444 0.00 0.00 34.73 2.34
9631 12683 6.550108 CCTGTATAGCTAAGTCCTTCCAGTAA 59.450 42.308 0.00 0.00 0.00 2.24
9643 12703 1.961394 TGGCCGTCCTGTATAGCTAAG 59.039 52.381 0.00 0.00 0.00 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.