Multiple sequence alignment - TraesCS1D01G224800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G224800 chr1D 100.000 5201 0 0 1 5201 313291580 313296780 0.000000e+00 9605
1 TraesCS1D01G224800 chr1D 95.846 337 10 4 2915 3249 313294289 313294623 4.580000e-150 542
2 TraesCS1D01G224800 chr1D 95.846 337 10 4 2710 3044 313294494 313294828 4.580000e-150 542
3 TraesCS1D01G224800 chr1D 90.625 256 18 4 3247 3502 313294448 313294697 8.350000e-88 335
4 TraesCS1D01G224800 chr1D 90.625 256 18 2 2869 3118 313294826 313295081 8.350000e-88 335
5 TraesCS1D01G224800 chr1D 92.754 207 12 1 3296 3502 313294288 313294491 3.940000e-76 296
6 TraesCS1D01G224800 chr1D 92.754 207 12 1 2709 2912 313294875 313295081 3.940000e-76 296
7 TraesCS1D01G224800 chr1D 90.000 180 12 5 3247 3425 313294654 313294828 1.460000e-55 228
8 TraesCS1D01G224800 chr1D 90.000 180 12 3 3075 3249 313294826 313295004 1.460000e-55 228
9 TraesCS1D01G224800 chr1B 92.595 1418 67 18 1650 3044 423640387 423641789 0.000000e+00 2002
10 TraesCS1D01G224800 chr1B 96.530 778 21 4 807 1579 423639414 423640190 0.000000e+00 1282
11 TraesCS1D01G224800 chr1B 92.065 857 47 11 3683 4525 423642107 423642956 0.000000e+00 1186
12 TraesCS1D01G224800 chr1B 94.055 656 30 7 2920 3571 423641459 423642109 0.000000e+00 987
13 TraesCS1D01G224800 chr1B 98.232 396 6 1 4806 5201 423643447 423643841 0.000000e+00 691
14 TraesCS1D01G224800 chr1B 88.803 259 20 4 2869 3120 423641787 423642043 5.060000e-80 309
15 TraesCS1D01G224800 chr1B 92.308 208 10 3 2711 2914 423641838 423642043 1.830000e-74 291
16 TraesCS1D01G224800 chr1B 91.304 207 18 0 3296 3502 423641454 423641660 3.070000e-72 283
17 TraesCS1D01G224800 chr1B 91.061 179 13 2 3247 3425 423641614 423641789 6.730000e-59 239
18 TraesCS1D01G224800 chr1B 87.778 180 16 3 3075 3249 423641787 423641965 6.830000e-49 206
19 TraesCS1D01G224800 chr1B 95.726 117 5 0 3569 3685 654278675 654278559 6.880000e-44 189
20 TraesCS1D01G224800 chr1B 92.800 125 9 0 3561 3685 647303938 647304062 1.150000e-41 182
21 TraesCS1D01G224800 chr1B 77.491 271 48 11 1536 1800 19944296 19944033 3.240000e-32 150
22 TraesCS1D01G224800 chr1B 93.407 91 3 3 1578 1668 423640284 423640371 1.180000e-26 132
23 TraesCS1D01G224800 chr1A 87.679 1469 120 38 156 1579 393455561 393457013 0.000000e+00 1653
24 TraesCS1D01G224800 chr1A 92.518 949 52 14 1579 2512 393457120 393458064 0.000000e+00 1341
25 TraesCS1D01G224800 chr1A 91.235 753 51 7 3683 4426 393458518 393459264 0.000000e+00 1011
26 TraesCS1D01G224800 chr1A 94.089 406 11 8 4802 5201 393461366 393461764 5.760000e-169 604
27 TraesCS1D01G224800 chr1A 88.124 421 27 7 2513 2914 393458037 393458453 3.640000e-131 479
28 TraesCS1D01G224800 chr1A 96.739 276 9 0 3296 3571 393458245 393458520 1.320000e-125 460
29 TraesCS1D01G224800 chr1A 82.238 563 73 16 3683 4243 504954686 504954149 1.320000e-125 460
30 TraesCS1D01G224800 chr1A 91.388 209 14 2 2915 3120 393458246 393458453 3.070000e-72 283
31 TraesCS1D01G224800 chr1A 89.091 220 12 2 4418 4625 393460512 393460731 3.990000e-66 263
32 TraesCS1D01G224800 chr1A 90.076 131 9 3 3121 3249 393458246 393458374 3.220000e-37 167
33 TraesCS1D01G224800 chr7D 81.158 812 98 31 3683 4488 342824792 342824030 7.450000e-168 601
34 TraesCS1D01G224800 chr7D 95.690 116 5 0 3570 3685 595978492 595978377 2.470000e-43 187
35 TraesCS1D01G224800 chr3D 80.911 812 100 32 3683 4488 95877245 95876483 1.610000e-164 590
36 TraesCS1D01G224800 chr3D 80.822 803 99 31 3692 4488 389198434 389197681 3.490000e-161 579
37 TraesCS1D01G224800 chr3D 94.017 117 2 1 1 117 101393939 101394050 6.920000e-39 172
38 TraesCS1D01G224800 chr3D 88.028 142 7 6 1 138 592738512 592738377 5.390000e-35 159
39 TraesCS1D01G224800 chr5D 80.788 812 101 31 3683 4488 439553506 439554268 7.500000e-163 584
40 TraesCS1D01G224800 chr5D 90.698 129 5 3 1 129 498446096 498446217 1.160000e-36 165
41 TraesCS1D01G224800 chr5D 88.028 142 11 2 1 142 7178899 7179034 4.170000e-36 163
42 TraesCS1D01G224800 chr5D 89.051 137 8 3 1 137 297592035 297591906 4.170000e-36 163
43 TraesCS1D01G224800 chr2A 80.617 810 106 30 3683 4488 406994140 406994902 3.490000e-161 579
44 TraesCS1D01G224800 chr2A 80.470 809 108 30 3683 4488 407122640 407123401 1.620000e-159 573
45 TraesCS1D01G224800 chr2A 95.726 117 5 0 3569 3685 755775907 755775791 6.880000e-44 189
46 TraesCS1D01G224800 chrUn 80.542 812 103 31 3683 4488 249905341 249906103 1.620000e-159 573
47 TraesCS1D01G224800 chrUn 81.627 381 37 19 4113 4488 24892000 24891648 8.520000e-73 285
48 TraesCS1D01G224800 chr4B 75.783 607 77 40 2311 2914 128944340 128943801 5.200000e-60 243
49 TraesCS1D01G224800 chr4B 90.698 129 11 1 3683 3811 128943738 128943611 2.490000e-38 171
50 TraesCS1D01G224800 chr4B 88.136 118 13 1 3004 3120 128943918 128943801 7.020000e-29 139
51 TraesCS1D01G224800 chr4D 84.038 213 30 2 119 327 438151794 438152006 8.830000e-48 202
52 TraesCS1D01G224800 chr4D 88.732 142 7 4 1 138 298322452 298322316 1.160000e-36 165
53 TraesCS1D01G224800 chr2B 95.763 118 5 0 3569 3686 148404591 148404474 1.910000e-44 191
54 TraesCS1D01G224800 chr2B 91.603 131 9 2 3559 3689 594838175 594838047 4.140000e-41 180
55 TraesCS1D01G224800 chr2B 91.339 127 9 2 3683 3808 39149479 39149604 6.920000e-39 172
56 TraesCS1D01G224800 chr2B 77.122 271 49 11 1536 1800 150888227 150887964 1.510000e-30 145
57 TraesCS1D01G224800 chr4A 95.726 117 5 0 3570 3686 462824599 462824483 6.880000e-44 189
58 TraesCS1D01G224800 chr4A 77.574 272 47 12 1536 1800 552695905 552695641 9.020000e-33 152
59 TraesCS1D01G224800 chr4A 77.574 272 47 12 1536 1800 571773160 571773424 9.020000e-33 152
60 TraesCS1D01G224800 chr6A 94.167 120 7 0 3566 3685 479391168 479391287 3.200000e-42 183
61 TraesCS1D01G224800 chr7A 91.603 131 10 1 3556 3686 217722865 217722994 4.140000e-41 180
62 TraesCS1D01G224800 chr6D 88.194 144 10 4 1 143 106896948 106896811 1.160000e-36 165
63 TraesCS1D01G224800 chr2D 87.413 143 13 1 1 143 185076392 185076255 5.390000e-35 159
64 TraesCS1D01G224800 chr5B 86.577 149 10 6 1 149 127460755 127460893 6.970000e-34 156
65 TraesCS1D01G224800 chr7B 77.491 271 48 11 1536 1800 685057118 685056855 3.240000e-32 150
66 TraesCS1D01G224800 chr5A 77.206 272 48 12 1536 1800 534269910 534269646 4.200000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G224800 chr1D 313291580 313296780 5200 False 1378.555556 9605 93.161111 1 5201 9 chr1D.!!$F1 5200
1 TraesCS1D01G224800 chr1B 423639414 423643841 4427 False 691.636364 2002 92.558000 807 5201 11 chr1B.!!$F2 4394
2 TraesCS1D01G224800 chr1A 393455561 393461764 6203 False 695.666667 1653 91.215444 156 5201 9 chr1A.!!$F1 5045
3 TraesCS1D01G224800 chr1A 504954149 504954686 537 True 460.000000 460 82.238000 3683 4243 1 chr1A.!!$R1 560
4 TraesCS1D01G224800 chr7D 342824030 342824792 762 True 601.000000 601 81.158000 3683 4488 1 chr7D.!!$R1 805
5 TraesCS1D01G224800 chr3D 95876483 95877245 762 True 590.000000 590 80.911000 3683 4488 1 chr3D.!!$R1 805
6 TraesCS1D01G224800 chr3D 389197681 389198434 753 True 579.000000 579 80.822000 3692 4488 1 chr3D.!!$R2 796
7 TraesCS1D01G224800 chr5D 439553506 439554268 762 False 584.000000 584 80.788000 3683 4488 1 chr5D.!!$F2 805
8 TraesCS1D01G224800 chr2A 406994140 406994902 762 False 579.000000 579 80.617000 3683 4488 1 chr2A.!!$F1 805
9 TraesCS1D01G224800 chr2A 407122640 407123401 761 False 573.000000 573 80.470000 3683 4488 1 chr2A.!!$F2 805
10 TraesCS1D01G224800 chrUn 249905341 249906103 762 False 573.000000 573 80.542000 3683 4488 1 chrUn.!!$F1 805

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.038526 ACCTTAGACGCACAGTTCGG 60.039 55.000 0.00 0.00 0.00 4.30 F
82 83 0.038892 TTAGACGCACAGTTCGGGAC 60.039 55.000 0.00 0.00 0.00 4.46 F
126 127 0.111832 TGACACAGACGGTCTACCCT 59.888 55.000 10.87 0.00 36.26 4.34 F
753 778 0.248175 GACAAAAACCGCGTCCGTTT 60.248 50.000 4.92 5.69 0.00 3.60 F
780 805 0.802494 CGCGTTGAAGTTGCCCTAAT 59.198 50.000 0.00 0.00 0.00 1.73 F
2743 2997 1.002033 GCTGGACTCTGTTTGCACAAG 60.002 52.381 0.00 0.00 30.36 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1642 3.119291 CAGAAACATACGAGCTAGCCTG 58.881 50.000 12.13 6.69 0.00 4.85 R
1634 1818 3.423539 TTGTGAGGGTTCATGAGGAAG 57.576 47.619 0.00 0.00 35.82 3.46 R
1731 1947 3.735746 GGTTGCAACTGAACATTTACAGC 59.264 43.478 27.64 3.39 37.61 4.40 R
2712 2966 4.660168 ACAGAGTCCAGCATTCAGAATTT 58.340 39.130 0.00 0.00 0.00 1.82 R
2778 3032 0.313987 GCGCATTAAACCTATGCCCC 59.686 55.000 0.30 0.00 44.25 5.80 R
4621 6401 0.185901 AAAGCACCTTCCCTGAGCAA 59.814 50.000 0.00 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.106736 TAGAGAGGGCCCGAACCT 58.893 61.111 18.44 14.71 42.18 3.50
18 19 1.381327 TAGAGAGGGCCCGAACCTG 60.381 63.158 18.44 0.00 38.79 4.00
19 20 2.873557 TAGAGAGGGCCCGAACCTGG 62.874 65.000 18.44 0.00 38.79 4.45
25 26 3.587095 GCCCGAACCTGGCTAAAC 58.413 61.111 0.00 0.00 45.70 2.01
26 27 1.302993 GCCCGAACCTGGCTAAACA 60.303 57.895 0.00 0.00 45.70 2.83
27 28 0.679960 GCCCGAACCTGGCTAAACAT 60.680 55.000 0.00 0.00 45.70 2.71
28 29 1.379527 CCCGAACCTGGCTAAACATC 58.620 55.000 0.00 0.00 0.00 3.06
29 30 1.006832 CCGAACCTGGCTAAACATCG 58.993 55.000 0.00 0.00 0.00 3.84
30 31 1.006832 CGAACCTGGCTAAACATCGG 58.993 55.000 0.00 0.00 0.00 4.18
31 32 1.379527 GAACCTGGCTAAACATCGGG 58.620 55.000 0.00 0.00 0.00 5.14
32 33 0.988832 AACCTGGCTAAACATCGGGA 59.011 50.000 0.00 0.00 0.00 5.14
33 34 1.213296 ACCTGGCTAAACATCGGGAT 58.787 50.000 0.00 0.00 0.00 3.85
34 35 1.134098 ACCTGGCTAAACATCGGGATG 60.134 52.381 7.11 7.11 44.15 3.51
47 48 2.901042 GGATGTGTCCCCCGTCTC 59.099 66.667 0.00 0.00 38.69 3.36
48 49 2.732619 GGATGTGTCCCCCGTCTCC 61.733 68.421 0.00 0.00 38.69 3.71
49 50 1.686110 GATGTGTCCCCCGTCTCCT 60.686 63.158 0.00 0.00 0.00 3.69
50 51 1.961180 GATGTGTCCCCCGTCTCCTG 61.961 65.000 0.00 0.00 0.00 3.86
51 52 2.603776 GTGTCCCCCGTCTCCTGT 60.604 66.667 0.00 0.00 0.00 4.00
52 53 2.203182 TGTCCCCCGTCTCCTGTT 59.797 61.111 0.00 0.00 0.00 3.16
53 54 0.901580 GTGTCCCCCGTCTCCTGTTA 60.902 60.000 0.00 0.00 0.00 2.41
54 55 0.901580 TGTCCCCCGTCTCCTGTTAC 60.902 60.000 0.00 0.00 0.00 2.50
55 56 1.305549 TCCCCCGTCTCCTGTTACC 60.306 63.158 0.00 0.00 0.00 2.85
56 57 1.611261 CCCCCGTCTCCTGTTACCA 60.611 63.158 0.00 0.00 0.00 3.25
57 58 0.981277 CCCCCGTCTCCTGTTACCAT 60.981 60.000 0.00 0.00 0.00 3.55
58 59 0.464452 CCCCGTCTCCTGTTACCATC 59.536 60.000 0.00 0.00 0.00 3.51
59 60 0.102481 CCCGTCTCCTGTTACCATCG 59.898 60.000 0.00 0.00 0.00 3.84
60 61 1.100510 CCGTCTCCTGTTACCATCGA 58.899 55.000 0.00 0.00 0.00 3.59
61 62 1.202268 CCGTCTCCTGTTACCATCGAC 60.202 57.143 0.00 0.00 0.00 4.20
62 63 1.202268 CGTCTCCTGTTACCATCGACC 60.202 57.143 0.00 0.00 0.00 4.79
63 64 2.100989 GTCTCCTGTTACCATCGACCT 58.899 52.381 0.00 0.00 0.00 3.85
64 65 2.496470 GTCTCCTGTTACCATCGACCTT 59.504 50.000 0.00 0.00 0.00 3.50
65 66 3.698040 GTCTCCTGTTACCATCGACCTTA 59.302 47.826 0.00 0.00 0.00 2.69
66 67 3.952323 TCTCCTGTTACCATCGACCTTAG 59.048 47.826 0.00 0.00 0.00 2.18
67 68 3.952323 CTCCTGTTACCATCGACCTTAGA 59.048 47.826 0.00 0.00 0.00 2.10
68 69 3.698040 TCCTGTTACCATCGACCTTAGAC 59.302 47.826 0.00 0.00 0.00 2.59
69 70 3.488721 CCTGTTACCATCGACCTTAGACG 60.489 52.174 0.00 0.00 0.00 4.18
70 71 2.159338 TGTTACCATCGACCTTAGACGC 60.159 50.000 0.00 0.00 0.00 5.19
71 72 1.753930 TACCATCGACCTTAGACGCA 58.246 50.000 0.00 0.00 0.00 5.24
72 73 0.172803 ACCATCGACCTTAGACGCAC 59.827 55.000 0.00 0.00 0.00 5.34
73 74 0.172578 CCATCGACCTTAGACGCACA 59.827 55.000 0.00 0.00 0.00 4.57
74 75 1.550065 CATCGACCTTAGACGCACAG 58.450 55.000 0.00 0.00 0.00 3.66
75 76 1.135373 CATCGACCTTAGACGCACAGT 60.135 52.381 0.00 0.00 0.00 3.55
76 77 0.956633 TCGACCTTAGACGCACAGTT 59.043 50.000 0.00 0.00 0.00 3.16
77 78 1.068748 TCGACCTTAGACGCACAGTTC 60.069 52.381 0.00 0.00 0.00 3.01
78 79 1.337821 GACCTTAGACGCACAGTTCG 58.662 55.000 0.00 0.00 0.00 3.95
79 80 0.038526 ACCTTAGACGCACAGTTCGG 60.039 55.000 0.00 0.00 0.00 4.30
80 81 0.736325 CCTTAGACGCACAGTTCGGG 60.736 60.000 0.00 0.00 0.00 5.14
81 82 0.242825 CTTAGACGCACAGTTCGGGA 59.757 55.000 0.00 0.00 0.00 5.14
82 83 0.038892 TTAGACGCACAGTTCGGGAC 60.039 55.000 0.00 0.00 0.00 4.46
83 84 1.870055 TAGACGCACAGTTCGGGACC 61.870 60.000 0.00 0.00 0.00 4.46
84 85 4.309950 ACGCACAGTTCGGGACCC 62.310 66.667 0.00 0.00 0.00 4.46
86 87 4.717313 GCACAGTTCGGGACCCCC 62.717 72.222 4.46 0.00 41.09 5.40
87 88 2.928396 CACAGTTCGGGACCCCCT 60.928 66.667 4.46 0.00 42.67 4.79
88 89 1.611261 CACAGTTCGGGACCCCCTA 60.611 63.158 4.46 0.00 42.67 3.53
89 90 1.159184 ACAGTTCGGGACCCCCTAA 59.841 57.895 4.46 0.00 42.67 2.69
90 91 1.196766 ACAGTTCGGGACCCCCTAAC 61.197 60.000 4.46 10.44 45.99 2.34
91 92 1.614525 AGTTCGGGACCCCCTAACC 60.615 63.158 13.72 0.00 46.57 2.85
92 93 3.022710 GTTCGGGACCCCCTAACCG 62.023 68.421 4.46 0.00 41.67 4.44
95 96 2.365764 GGGACCCCCTAACCGAGA 59.634 66.667 0.00 0.00 41.34 4.04
96 97 1.074699 GGGACCCCCTAACCGAGAT 60.075 63.158 0.00 0.00 41.34 2.75
97 98 1.120184 GGGACCCCCTAACCGAGATC 61.120 65.000 0.00 0.00 41.34 2.75
98 99 1.120184 GGACCCCCTAACCGAGATCC 61.120 65.000 0.00 0.00 0.00 3.36
99 100 1.457079 ACCCCCTAACCGAGATCCG 60.457 63.158 0.00 0.00 38.18 4.18
100 101 2.735237 CCCCTAACCGAGATCCGC 59.265 66.667 0.00 0.00 36.84 5.54
101 102 2.735237 CCCTAACCGAGATCCGCC 59.265 66.667 0.00 0.00 36.84 6.13
102 103 2.335369 CCTAACCGAGATCCGCCG 59.665 66.667 0.00 0.00 36.84 6.46
107 108 2.125269 CCGAGATCCGCCGGTTTT 60.125 61.111 1.63 0.00 40.78 2.43
108 109 2.461110 CCGAGATCCGCCGGTTTTG 61.461 63.158 1.63 0.00 40.78 2.44
109 110 1.447140 CGAGATCCGCCGGTTTTGA 60.447 57.895 1.63 0.00 0.00 2.69
110 111 1.693083 CGAGATCCGCCGGTTTTGAC 61.693 60.000 1.63 0.00 0.00 3.18
111 112 0.672401 GAGATCCGCCGGTTTTGACA 60.672 55.000 1.63 0.00 0.00 3.58
112 113 0.953960 AGATCCGCCGGTTTTGACAC 60.954 55.000 1.63 0.00 0.00 3.67
113 114 1.228003 ATCCGCCGGTTTTGACACA 60.228 52.632 1.63 0.00 0.00 3.72
114 115 1.234615 ATCCGCCGGTTTTGACACAG 61.235 55.000 1.63 0.00 0.00 3.66
115 116 1.890041 CCGCCGGTTTTGACACAGA 60.890 57.895 1.90 0.00 0.00 3.41
116 117 1.278637 CGCCGGTTTTGACACAGAC 59.721 57.895 1.90 0.00 0.00 3.51
117 118 1.278637 GCCGGTTTTGACACAGACG 59.721 57.895 1.90 0.00 0.00 4.18
118 119 1.938861 CCGGTTTTGACACAGACGG 59.061 57.895 0.00 0.00 0.00 4.79
119 120 0.812412 CCGGTTTTGACACAGACGGT 60.812 55.000 0.00 0.00 35.47 4.83
120 121 0.580104 CGGTTTTGACACAGACGGTC 59.420 55.000 0.00 0.00 35.83 4.79
121 122 1.805120 CGGTTTTGACACAGACGGTCT 60.805 52.381 4.45 4.45 36.26 3.85
122 123 2.544277 CGGTTTTGACACAGACGGTCTA 60.544 50.000 10.87 0.00 36.26 2.59
123 124 2.798847 GGTTTTGACACAGACGGTCTAC 59.201 50.000 10.87 2.69 36.26 2.59
124 125 2.798847 GTTTTGACACAGACGGTCTACC 59.201 50.000 10.87 1.30 36.26 3.18
125 126 0.963962 TTGACACAGACGGTCTACCC 59.036 55.000 10.87 1.64 36.26 3.69
126 127 0.111832 TGACACAGACGGTCTACCCT 59.888 55.000 10.87 0.00 36.26 4.34
127 128 0.810016 GACACAGACGGTCTACCCTC 59.190 60.000 10.87 0.00 32.54 4.30
128 129 0.611340 ACACAGACGGTCTACCCTCC 60.611 60.000 10.87 0.00 0.00 4.30
129 130 0.611062 CACAGACGGTCTACCCTCCA 60.611 60.000 10.87 0.00 0.00 3.86
130 131 0.611340 ACAGACGGTCTACCCTCCAC 60.611 60.000 10.87 0.00 0.00 4.02
131 132 1.000107 AGACGGTCTACCCTCCACC 60.000 63.158 9.33 0.00 0.00 4.61
132 133 1.304713 GACGGTCTACCCTCCACCA 60.305 63.158 0.00 0.00 0.00 4.17
133 134 1.602327 GACGGTCTACCCTCCACCAC 61.602 65.000 0.00 0.00 0.00 4.16
134 135 2.356780 CGGTCTACCCTCCACCACC 61.357 68.421 0.00 0.00 0.00 4.61
135 136 2.356780 GGTCTACCCTCCACCACCG 61.357 68.421 0.00 0.00 0.00 4.94
136 137 2.682494 TCTACCCTCCACCACCGC 60.682 66.667 0.00 0.00 0.00 5.68
137 138 3.782443 CTACCCTCCACCACCGCC 61.782 72.222 0.00 0.00 0.00 6.13
138 139 4.326227 TACCCTCCACCACCGCCT 62.326 66.667 0.00 0.00 0.00 5.52
141 142 3.775654 CCTCCACCACCGCCTCTC 61.776 72.222 0.00 0.00 0.00 3.20
142 143 3.775654 CTCCACCACCGCCTCTCC 61.776 72.222 0.00 0.00 0.00 3.71
198 200 2.045131 GCCGTCCACGAGAGGTACT 61.045 63.158 0.00 0.00 42.55 2.73
200 202 1.297664 CCGTCCACGAGAGGTACTAG 58.702 60.000 0.00 0.00 40.15 2.57
363 368 2.520741 GGAGGAGGAGGAGGAGCG 60.521 72.222 0.00 0.00 0.00 5.03
385 390 2.334653 GAGCGCGAGGATGAGGAG 59.665 66.667 12.10 0.00 0.00 3.69
388 393 3.893763 CGCGAGGATGAGGAGCGT 61.894 66.667 0.00 0.00 44.96 5.07
390 395 3.069980 GCGAGGATGAGGAGCGTGT 62.070 63.158 0.00 0.00 0.00 4.49
478 500 2.359169 CCGCTGCCCTTGACTCCTA 61.359 63.158 0.00 0.00 0.00 2.94
509 531 0.468214 CTGGGAGACTATGAGGCGGA 60.468 60.000 0.00 0.00 0.00 5.54
516 538 5.365619 GGAGACTATGAGGCGGATTTTTAA 58.634 41.667 0.00 0.00 0.00 1.52
554 576 7.717436 TGTGTAATTATGTTTGAAGTGGACTCA 59.283 33.333 0.00 0.00 0.00 3.41
555 577 8.230486 GTGTAATTATGTTTGAAGTGGACTCAG 58.770 37.037 0.00 0.00 0.00 3.35
557 579 2.708216 TGTTTGAAGTGGACTCAGCA 57.292 45.000 0.00 0.00 0.00 4.41
558 580 2.564771 TGTTTGAAGTGGACTCAGCAG 58.435 47.619 0.00 0.00 0.00 4.24
559 581 2.092968 TGTTTGAAGTGGACTCAGCAGT 60.093 45.455 0.00 0.00 34.57 4.40
560 582 2.945668 GTTTGAAGTGGACTCAGCAGTT 59.054 45.455 0.00 0.00 30.63 3.16
565 587 0.886490 GTGGACTCAGCAGTTGTGGG 60.886 60.000 0.00 0.00 30.63 4.61
575 597 3.742369 CAGCAGTTGTGGGCTTTAATTTG 59.258 43.478 0.00 0.00 38.56 2.32
582 604 7.012232 CAGTTGTGGGCTTTAATTTGAATGTTT 59.988 33.333 0.00 0.00 0.00 2.83
656 679 0.322322 TGGGACTAAAATGCGTCGGT 59.678 50.000 0.00 0.00 0.00 4.69
673 696 3.353029 TCGCGTTGGGTGCACATG 61.353 61.111 20.43 4.76 0.00 3.21
680 703 3.576356 GGGTGCACATGCCGATCG 61.576 66.667 20.43 8.51 41.18 3.69
685 708 0.657312 TGCACATGCCGATCGAAATC 59.343 50.000 18.66 3.22 41.18 2.17
686 709 0.657312 GCACATGCCGATCGAAATCA 59.343 50.000 18.66 9.10 34.31 2.57
690 713 3.543494 CACATGCCGATCGAAATCAAAAC 59.457 43.478 18.66 0.00 31.76 2.43
693 717 1.395608 GCCGATCGAAATCAAAACCGA 59.604 47.619 18.66 0.00 35.43 4.69
697 721 4.436852 CCGATCGAAATCAAAACCGAACAT 60.437 41.667 18.66 0.00 34.59 2.71
698 722 5.086058 CGATCGAAATCAAAACCGAACATT 58.914 37.500 10.26 0.00 34.59 2.71
705 729 3.512680 TCAAAACCGAACATTTGCGTTT 58.487 36.364 0.00 0.00 36.66 3.60
707 731 2.570442 AACCGAACATTTGCGTTTGT 57.430 40.000 0.00 0.00 0.00 2.83
709 733 2.456010 ACCGAACATTTGCGTTTGTTC 58.544 42.857 12.78 12.78 45.22 3.18
714 738 1.604755 ACATTTGCGTTTGTTCGGCTA 59.395 42.857 0.00 0.00 0.00 3.93
716 740 2.108178 TTTGCGTTTGTTCGGCTAAC 57.892 45.000 0.00 0.00 38.67 2.34
717 741 0.308376 TTGCGTTTGTTCGGCTAACC 59.692 50.000 0.00 0.00 37.27 2.85
722 746 2.030628 CGTTTGTTCGGCTAACCCAAAT 60.031 45.455 0.00 0.00 37.27 2.32
731 755 3.659786 GGCTAACCCAAATGGACAAAAC 58.340 45.455 0.00 0.00 37.39 2.43
733 757 4.443598 GGCTAACCCAAATGGACAAAACAA 60.444 41.667 0.00 0.00 37.39 2.83
744 769 4.238514 TGGACAAAACAAGACAAAAACCG 58.761 39.130 0.00 0.00 0.00 4.44
746 771 2.664085 ACAAAACAAGACAAAAACCGCG 59.336 40.909 0.00 0.00 0.00 6.46
747 772 2.640346 AAACAAGACAAAAACCGCGT 57.360 40.000 4.92 0.00 0.00 6.01
748 773 2.182904 AACAAGACAAAAACCGCGTC 57.817 45.000 4.92 0.00 0.00 5.19
749 774 0.379316 ACAAGACAAAAACCGCGTCC 59.621 50.000 4.92 0.00 0.00 4.79
752 777 1.091197 AGACAAAAACCGCGTCCGTT 61.091 50.000 4.92 0.00 0.00 4.44
753 778 0.248175 GACAAAAACCGCGTCCGTTT 60.248 50.000 4.92 5.69 0.00 3.60
772 797 3.698463 CGTCGGCGCGTTGAAGTT 61.698 61.111 8.43 0.00 0.00 2.66
773 798 2.127758 GTCGGCGCGTTGAAGTTG 60.128 61.111 8.43 0.00 0.00 3.16
774 799 4.007940 TCGGCGCGTTGAAGTTGC 62.008 61.111 8.43 0.00 0.00 4.17
776 801 4.700365 GGCGCGTTGAAGTTGCCC 62.700 66.667 8.43 0.00 39.83 5.36
777 802 3.660111 GCGCGTTGAAGTTGCCCT 61.660 61.111 8.43 0.00 0.00 5.19
778 803 2.322081 GCGCGTTGAAGTTGCCCTA 61.322 57.895 8.43 0.00 0.00 3.53
779 804 1.847890 GCGCGTTGAAGTTGCCCTAA 61.848 55.000 8.43 0.00 0.00 2.69
780 805 0.802494 CGCGTTGAAGTTGCCCTAAT 59.198 50.000 0.00 0.00 0.00 1.73
781 806 1.465689 CGCGTTGAAGTTGCCCTAATG 60.466 52.381 0.00 0.00 0.00 1.90
782 807 1.135402 GCGTTGAAGTTGCCCTAATGG 60.135 52.381 0.00 0.00 37.09 3.16
798 823 3.603365 GGCAGGGTGGCAATACAC 58.397 61.111 0.00 0.00 43.14 2.90
799 824 2.406616 GGCAGGGTGGCAATACACG 61.407 63.158 0.00 0.00 43.14 4.49
848 913 2.304470 TGGATTGAAATCTGACGGTGGA 59.696 45.455 3.21 0.00 35.73 4.02
889 965 2.037847 AATTGTGCTCCAGCCCCC 59.962 61.111 0.00 0.00 41.18 5.40
890 966 2.786512 GAATTGTGCTCCAGCCCCCA 62.787 60.000 0.00 0.00 41.18 4.96
891 967 2.793317 AATTGTGCTCCAGCCCCCAG 62.793 60.000 0.00 0.00 41.18 4.45
903 979 2.283173 CCCCAGGCGCTCCTTTTT 60.283 61.111 7.64 0.00 41.93 1.94
975 1052 3.133721 CCATTGAACAAAACCCCTCAACA 59.866 43.478 0.00 0.00 31.00 3.33
1053 1130 4.715130 TCCCAGGTACGCCAGGCT 62.715 66.667 10.54 0.00 39.86 4.58
1081 1158 1.448985 TTTCTCAAATTCCTCCCGCG 58.551 50.000 0.00 0.00 0.00 6.46
1531 1608 4.348020 TGTCTGTCCCCCTTTAGTATCT 57.652 45.455 0.00 0.00 0.00 1.98
1565 1642 2.975193 GACCGTTTTAATTGTTGCGGAC 59.025 45.455 16.35 9.16 41.45 4.79
1645 1829 6.319658 GGAAATGAGTTATGCTTCCTCATGAA 59.680 38.462 12.59 0.00 43.32 2.57
1708 1924 8.816144 GTTTGTCTGTTGATTGATTAGCAAAAA 58.184 29.630 0.00 0.00 40.48 1.94
1727 1943 5.876651 AAAAGTTGATTTGAGCCCTCTTT 57.123 34.783 0.00 0.00 0.00 2.52
1731 1947 4.455877 AGTTGATTTGAGCCCTCTTTAACG 59.544 41.667 0.00 0.00 0.00 3.18
1795 2011 3.251571 GACTTGGTCCATGTACGAGTTC 58.748 50.000 10.27 0.00 0.00 3.01
1953 2170 7.568199 AACAATAAAGTTACAGTGCTTCACT 57.432 32.000 0.00 0.00 46.51 3.41
2216 2433 3.006752 TGGGTCCAAAATGTTCAAGATGC 59.993 43.478 0.00 0.00 0.00 3.91
2217 2434 3.588955 GGTCCAAAATGTTCAAGATGCC 58.411 45.455 0.00 0.00 0.00 4.40
2220 2437 3.511146 TCCAAAATGTTCAAGATGCCCTC 59.489 43.478 0.00 0.00 0.00 4.30
2259 2476 8.279970 ACATGCTAATGTTTCTGCTTACATTA 57.720 30.769 0.00 0.00 44.94 1.90
2268 2485 9.884636 ATGTTTCTGCTTACATTAGTATGTACA 57.115 29.630 0.00 0.00 44.73 2.90
2309 2546 3.788227 TCTACCAGTTGCCTGATTTGT 57.212 42.857 0.00 0.00 41.50 2.83
2354 2591 5.432645 TCGGCCACAAATATTATTCACAGA 58.567 37.500 2.24 0.00 0.00 3.41
2396 2633 1.487482 TTTGCACTCAGTTCGTCTCG 58.513 50.000 0.00 0.00 0.00 4.04
2712 2966 2.533916 TGCCAAATGATGCCAGGTTTA 58.466 42.857 0.00 0.00 0.00 2.01
2743 2997 1.002033 GCTGGACTCTGTTTGCACAAG 60.002 52.381 0.00 0.00 30.36 3.16
2744 2998 1.605710 CTGGACTCTGTTTGCACAAGG 59.394 52.381 0.00 0.00 30.36 3.61
2779 3033 8.550710 TTTGATTTCAATAAAAATGGAGCTGG 57.449 30.769 0.00 0.00 35.55 4.85
2780 3034 6.642430 TGATTTCAATAAAAATGGAGCTGGG 58.358 36.000 0.00 0.00 0.00 4.45
2781 3035 5.419239 TTTCAATAAAAATGGAGCTGGGG 57.581 39.130 0.00 0.00 0.00 4.96
2782 3036 2.765699 TCAATAAAAATGGAGCTGGGGC 59.234 45.455 0.00 0.00 39.06 5.80
2783 3037 2.500910 CAATAAAAATGGAGCTGGGGCA 59.499 45.455 0.00 0.00 41.70 5.36
2784 3038 2.548464 TAAAAATGGAGCTGGGGCAT 57.452 45.000 0.00 0.00 41.70 4.40
2785 3039 2.548464 AAAAATGGAGCTGGGGCATA 57.452 45.000 0.00 0.00 41.70 3.14
2786 3040 2.077687 AAAATGGAGCTGGGGCATAG 57.922 50.000 0.00 0.00 41.70 2.23
2787 3041 0.186873 AAATGGAGCTGGGGCATAGG 59.813 55.000 0.00 0.00 41.70 2.57
2788 3042 0.995675 AATGGAGCTGGGGCATAGGT 60.996 55.000 0.00 0.00 41.70 3.08
2789 3043 0.995675 ATGGAGCTGGGGCATAGGTT 60.996 55.000 0.00 0.00 41.70 3.50
2790 3044 1.214305 TGGAGCTGGGGCATAGGTTT 61.214 55.000 0.00 0.00 41.70 3.27
2791 3045 0.843984 GGAGCTGGGGCATAGGTTTA 59.156 55.000 0.00 0.00 41.70 2.01
2792 3046 1.214424 GGAGCTGGGGCATAGGTTTAA 59.786 52.381 0.00 0.00 41.70 1.52
2793 3047 2.158460 GGAGCTGGGGCATAGGTTTAAT 60.158 50.000 0.00 0.00 41.70 1.40
2794 3048 2.887152 GAGCTGGGGCATAGGTTTAATG 59.113 50.000 0.00 0.00 41.70 1.90
2801 3055 2.664916 GCATAGGTTTAATGCGCCATG 58.335 47.619 4.18 0.00 40.27 3.66
2802 3056 2.034558 GCATAGGTTTAATGCGCCATGT 59.965 45.455 4.18 0.00 40.27 3.21
2803 3057 3.252215 GCATAGGTTTAATGCGCCATGTA 59.748 43.478 4.18 0.00 40.27 2.29
2804 3058 4.261405 GCATAGGTTTAATGCGCCATGTAA 60.261 41.667 4.18 0.00 40.27 2.41
2805 3059 5.734786 GCATAGGTTTAATGCGCCATGTAAA 60.735 40.000 4.18 1.27 40.27 2.01
2806 3060 6.446318 CATAGGTTTAATGCGCCATGTAAAT 58.554 36.000 4.18 0.00 0.00 1.40
2807 3061 4.932146 AGGTTTAATGCGCCATGTAAATC 58.068 39.130 4.18 4.74 0.00 2.17
2808 3062 4.400884 AGGTTTAATGCGCCATGTAAATCA 59.599 37.500 4.18 0.00 0.00 2.57
2809 3063 5.105554 AGGTTTAATGCGCCATGTAAATCAA 60.106 36.000 4.18 0.00 0.00 2.57
2810 3064 5.578727 GGTTTAATGCGCCATGTAAATCAAA 59.421 36.000 4.18 0.00 0.00 2.69
2811 3065 6.091441 GGTTTAATGCGCCATGTAAATCAAAA 59.909 34.615 4.18 0.00 0.00 2.44
2812 3066 7.201600 GGTTTAATGCGCCATGTAAATCAAAAT 60.202 33.333 4.18 0.00 0.00 1.82
2813 3067 8.812329 GTTTAATGCGCCATGTAAATCAAAATA 58.188 29.630 4.18 0.00 0.00 1.40
2814 3068 8.932945 TTAATGCGCCATGTAAATCAAAATAA 57.067 26.923 4.18 0.00 0.00 1.40
2815 3069 7.840342 AATGCGCCATGTAAATCAAAATAAA 57.160 28.000 4.18 0.00 0.00 1.40
2816 3070 7.840342 ATGCGCCATGTAAATCAAAATAAAA 57.160 28.000 4.18 0.00 0.00 1.52
2817 3071 7.840342 TGCGCCATGTAAATCAAAATAAAAT 57.160 28.000 4.18 0.00 0.00 1.82
2818 3072 7.682824 TGCGCCATGTAAATCAAAATAAAATG 58.317 30.769 4.18 0.00 0.00 2.32
2819 3073 6.628461 GCGCCATGTAAATCAAAATAAAATGC 59.372 34.615 0.00 0.00 0.00 3.56
2820 3074 7.465781 GCGCCATGTAAATCAAAATAAAATGCT 60.466 33.333 0.00 0.00 0.00 3.79
2821 3075 9.029243 CGCCATGTAAATCAAAATAAAATGCTA 57.971 29.630 0.00 0.00 0.00 3.49
2850 3104 7.466746 ACAACAATAGGCTAATTGAACATGT 57.533 32.000 18.11 0.00 38.84 3.21
2851 3105 7.315142 ACAACAATAGGCTAATTGAACATGTG 58.685 34.615 18.11 10.53 38.84 3.21
2852 3106 7.176515 ACAACAATAGGCTAATTGAACATGTGA 59.823 33.333 18.11 0.00 38.84 3.58
2853 3107 7.886629 ACAATAGGCTAATTGAACATGTGAT 57.113 32.000 17.70 0.00 38.84 3.06
2854 3108 8.297470 ACAATAGGCTAATTGAACATGTGATT 57.703 30.769 17.70 3.43 38.84 2.57
2855 3109 8.752187 ACAATAGGCTAATTGAACATGTGATTT 58.248 29.630 17.70 0.00 38.84 2.17
2856 3110 9.590451 CAATAGGCTAATTGAACATGTGATTTT 57.410 29.630 0.00 0.00 38.84 1.82
2857 3111 9.590451 AATAGGCTAATTGAACATGTGATTTTG 57.410 29.630 0.00 0.00 0.00 2.44
2858 3112 6.400568 AGGCTAATTGAACATGTGATTTTGG 58.599 36.000 0.00 0.00 0.00 3.28
2859 3113 6.211184 AGGCTAATTGAACATGTGATTTTGGA 59.789 34.615 0.00 0.00 0.00 3.53
2860 3114 6.873076 GGCTAATTGAACATGTGATTTTGGAA 59.127 34.615 0.00 0.00 0.00 3.53
2861 3115 7.387397 GGCTAATTGAACATGTGATTTTGGAAA 59.613 33.333 0.00 0.00 0.00 3.13
2862 3116 8.938906 GCTAATTGAACATGTGATTTTGGAAAT 58.061 29.630 0.00 0.00 0.00 2.17
2864 3118 8.680039 AATTGAACATGTGATTTTGGAAATGT 57.320 26.923 0.00 0.00 0.00 2.71
2865 3119 8.680039 ATTGAACATGTGATTTTGGAAATGTT 57.320 26.923 0.00 0.00 40.06 2.71
2866 3120 9.775854 ATTGAACATGTGATTTTGGAAATGTTA 57.224 25.926 0.00 0.00 38.12 2.41
2867 3121 9.775854 TTGAACATGTGATTTTGGAAATGTTAT 57.224 25.926 0.00 0.00 38.12 1.89
2868 3122 9.205719 TGAACATGTGATTTTGGAAATGTTATG 57.794 29.630 0.00 0.00 38.12 1.90
2869 3123 8.550710 AACATGTGATTTTGGAAATGTTATGG 57.449 30.769 0.00 0.00 36.69 2.74
2870 3124 6.594937 ACATGTGATTTTGGAAATGTTATGGC 59.405 34.615 0.00 0.00 0.00 4.40
2871 3125 5.486526 TGTGATTTTGGAAATGTTATGGCC 58.513 37.500 0.00 0.00 0.00 5.36
2872 3126 4.566360 GTGATTTTGGAAATGTTATGGCCG 59.434 41.667 0.00 0.00 0.00 6.13
2873 3127 4.464244 TGATTTTGGAAATGTTATGGCCGA 59.536 37.500 0.00 0.00 0.00 5.54
2874 3128 4.873746 TTTTGGAAATGTTATGGCCGAA 57.126 36.364 0.00 0.00 0.00 4.30
2875 3129 4.448537 TTTGGAAATGTTATGGCCGAAG 57.551 40.909 0.00 0.00 0.00 3.79
2893 3147 4.437239 CGAAGGAGCTTATGAATCAGTGT 58.563 43.478 0.00 0.00 0.00 3.55
2894 3148 4.872691 CGAAGGAGCTTATGAATCAGTGTT 59.127 41.667 0.00 0.00 0.00 3.32
2895 3149 5.352569 CGAAGGAGCTTATGAATCAGTGTTT 59.647 40.000 0.00 0.00 0.00 2.83
2896 3150 6.506500 AAGGAGCTTATGAATCAGTGTTTG 57.493 37.500 0.00 0.00 0.00 2.93
2897 3151 5.564550 AGGAGCTTATGAATCAGTGTTTGT 58.435 37.500 0.00 0.00 0.00 2.83
2898 3152 6.711277 AGGAGCTTATGAATCAGTGTTTGTA 58.289 36.000 0.00 0.00 0.00 2.41
2899 3153 7.168219 AGGAGCTTATGAATCAGTGTTTGTAA 58.832 34.615 0.00 0.00 0.00 2.41
2900 3154 7.665559 AGGAGCTTATGAATCAGTGTTTGTAAA 59.334 33.333 0.00 0.00 0.00 2.01
2901 3155 7.750903 GGAGCTTATGAATCAGTGTTTGTAAAC 59.249 37.037 0.65 0.65 39.33 2.01
2902 3156 8.396272 AGCTTATGAATCAGTGTTTGTAAACT 57.604 30.769 8.74 0.00 39.59 2.66
2903 3157 8.292448 AGCTTATGAATCAGTGTTTGTAAACTG 58.708 33.333 8.74 0.00 44.23 3.16
2904 3158 7.538678 GCTTATGAATCAGTGTTTGTAAACTGG 59.461 37.037 8.74 0.00 43.28 4.00
2905 3159 6.959639 ATGAATCAGTGTTTGTAAACTGGT 57.040 33.333 8.74 0.00 43.28 4.00
2907 3161 6.559810 TGAATCAGTGTTTGTAAACTGGTTG 58.440 36.000 6.07 3.12 45.46 3.77
2908 3162 4.974368 TCAGTGTTTGTAAACTGGTTGG 57.026 40.909 8.74 0.00 43.28 3.77
2909 3163 4.337145 TCAGTGTTTGTAAACTGGTTGGT 58.663 39.130 8.74 0.00 43.28 3.67
2910 3164 4.767928 TCAGTGTTTGTAAACTGGTTGGTT 59.232 37.500 8.74 0.00 43.28 3.67
2911 3165 5.944599 TCAGTGTTTGTAAACTGGTTGGTTA 59.055 36.000 8.74 0.00 43.28 2.85
2912 3166 6.603997 TCAGTGTTTGTAAACTGGTTGGTTAT 59.396 34.615 8.74 0.00 43.28 1.89
2913 3167 7.122948 TCAGTGTTTGTAAACTGGTTGGTTATT 59.877 33.333 8.74 0.00 43.28 1.40
2914 3168 7.762159 CAGTGTTTGTAAACTGGTTGGTTATTT 59.238 33.333 8.74 0.00 40.12 1.40
2915 3169 8.315482 AGTGTTTGTAAACTGGTTGGTTATTTT 58.685 29.630 8.74 0.00 39.59 1.82
2916 3170 8.937884 GTGTTTGTAAACTGGTTGGTTATTTTT 58.062 29.630 8.74 0.00 39.59 1.94
2939 3193 9.912634 TTTTAAAATTCTAAATGCTGGACTCTG 57.087 29.630 0.00 0.00 0.00 3.35
2940 3194 8.635765 TTAAAATTCTAAATGCTGGACTCTGT 57.364 30.769 0.00 0.00 0.00 3.41
2941 3195 7.530426 AAAATTCTAAATGCTGGACTCTGTT 57.470 32.000 0.00 0.00 0.00 3.16
2942 3196 7.530426 AAATTCTAAATGCTGGACTCTGTTT 57.470 32.000 0.00 0.00 0.00 2.83
2943 3197 5.947228 TTCTAAATGCTGGACTCTGTTTG 57.053 39.130 0.00 0.00 0.00 2.93
2944 3198 3.753272 TCTAAATGCTGGACTCTGTTTGC 59.247 43.478 0.00 0.00 0.00 3.68
2945 3199 1.985473 AATGCTGGACTCTGTTTGCA 58.015 45.000 0.00 0.00 34.88 4.08
2946 3200 1.242076 ATGCTGGACTCTGTTTGCAC 58.758 50.000 0.00 0.00 33.16 4.57
2947 3201 0.107263 TGCTGGACTCTGTTTGCACA 60.107 50.000 0.00 0.00 0.00 4.57
2948 3202 1.024271 GCTGGACTCTGTTTGCACAA 58.976 50.000 0.00 0.00 30.36 3.33
2949 3203 1.002033 GCTGGACTCTGTTTGCACAAG 60.002 52.381 0.00 0.00 30.36 3.16
2950 3204 1.605710 CTGGACTCTGTTTGCACAAGG 59.394 52.381 0.00 0.00 30.36 3.61
2951 3205 1.064758 TGGACTCTGTTTGCACAAGGT 60.065 47.619 0.00 0.00 30.36 3.50
2952 3206 1.334869 GGACTCTGTTTGCACAAGGTG 59.665 52.381 0.00 0.00 36.51 4.00
2953 3207 2.017049 GACTCTGTTTGCACAAGGTGT 58.983 47.619 0.00 0.00 35.75 4.16
2954 3208 3.202906 GACTCTGTTTGCACAAGGTGTA 58.797 45.455 0.00 0.00 35.75 2.90
2955 3209 2.943033 ACTCTGTTTGCACAAGGTGTAC 59.057 45.455 0.00 0.00 35.75 2.90
2956 3210 2.942376 CTCTGTTTGCACAAGGTGTACA 59.058 45.455 0.00 0.00 35.75 2.90
2957 3211 3.348119 TCTGTTTGCACAAGGTGTACAA 58.652 40.909 0.00 0.00 32.25 2.41
2958 3212 3.759086 TCTGTTTGCACAAGGTGTACAAA 59.241 39.130 0.00 3.24 40.25 2.83
2959 3213 4.400884 TCTGTTTGCACAAGGTGTACAAAT 59.599 37.500 9.37 0.00 43.15 2.32
2960 3214 5.078411 TGTTTGCACAAGGTGTACAAATT 57.922 34.783 9.37 0.00 43.15 1.82
2961 3215 5.482908 TGTTTGCACAAGGTGTACAAATTT 58.517 33.333 9.37 0.00 43.15 1.82
2962 3216 5.934625 TGTTTGCACAAGGTGTACAAATTTT 59.065 32.000 9.37 0.00 43.15 1.82
2963 3217 6.128445 TGTTTGCACAAGGTGTACAAATTTTG 60.128 34.615 9.37 7.59 43.15 2.44
2964 3218 5.330455 TGCACAAGGTGTACAAATTTTGA 57.670 34.783 15.81 0.00 35.75 2.69
2965 3219 5.911752 TGCACAAGGTGTACAAATTTTGAT 58.088 33.333 15.81 3.30 35.75 2.57
2966 3220 6.344500 TGCACAAGGTGTACAAATTTTGATT 58.656 32.000 15.81 0.00 35.75 2.57
2967 3221 6.820656 TGCACAAGGTGTACAAATTTTGATTT 59.179 30.769 15.81 0.00 35.75 2.17
2968 3222 7.010923 TGCACAAGGTGTACAAATTTTGATTTC 59.989 33.333 15.81 4.01 35.75 2.17
2969 3223 7.010923 GCACAAGGTGTACAAATTTTGATTTCA 59.989 33.333 15.81 6.27 35.75 2.69
2970 3224 8.877779 CACAAGGTGTACAAATTTTGATTTCAA 58.122 29.630 15.81 0.00 0.00 2.69
2971 3225 9.612066 ACAAGGTGTACAAATTTTGATTTCAAT 57.388 25.926 15.81 0.00 35.55 2.57
2989 3243 2.500910 CAATAAAAATGGAGCTGGGGCA 59.499 45.455 0.00 0.00 41.70 5.36
3157 3414 2.620115 CTGGACTCTGTTTGCACAATGT 59.380 45.455 0.00 0.00 30.36 2.71
3191 3448 6.135290 TGATTTCGATAAAATTGGAGCTGG 57.865 37.500 0.00 0.00 37.70 4.85
3196 3453 1.851304 TAAAATTGGAGCTGGGGCAG 58.149 50.000 0.00 0.00 41.70 4.85
3206 3463 1.708551 AGCTGGGGCAGTAGGTTTAAA 59.291 47.619 0.00 0.00 41.70 1.52
3273 3530 5.277683 CGAAGGAGCTTATGAATCCATGTTG 60.278 44.000 0.00 0.00 35.45 3.33
3286 3543 4.431416 TCCATGTTGACTGTAAACTGGT 57.569 40.909 18.23 2.54 32.38 4.00
3289 3546 4.261572 CCATGTTGACTGTAAACTGGTTGG 60.262 45.833 9.37 7.32 0.00 3.77
3399 3656 2.017049 AGGCGCCATGTGAATCTAAAC 58.983 47.619 31.54 0.00 0.00 2.01
3502 3759 7.066163 AGTGTTAACTGTAAACTGGTTGGTTAC 59.934 37.037 7.22 0.00 46.22 2.50
3509 3766 2.112279 ACTGGTTGGTTACTGAGGGA 57.888 50.000 0.00 0.00 0.00 4.20
3510 3767 1.697982 ACTGGTTGGTTACTGAGGGAC 59.302 52.381 0.00 0.00 0.00 4.46
3534 3791 3.350219 TTATCTGTTTCTGTCCCAGCC 57.650 47.619 0.00 0.00 0.00 4.85
3568 3825 4.098196 TGCATGACAATGGTGATAATGTGG 59.902 41.667 0.00 0.00 34.09 4.17
3569 3826 4.098349 GCATGACAATGGTGATAATGTGGT 59.902 41.667 0.00 0.00 34.09 4.16
3570 3827 5.299028 GCATGACAATGGTGATAATGTGGTA 59.701 40.000 0.00 0.00 34.09 3.25
3571 3828 6.728200 CATGACAATGGTGATAATGTGGTAC 58.272 40.000 0.00 0.00 0.00 3.34
3572 3829 6.061022 TGACAATGGTGATAATGTGGTACT 57.939 37.500 0.00 0.00 0.00 2.73
3573 3830 6.112734 TGACAATGGTGATAATGTGGTACTC 58.887 40.000 0.00 0.00 0.00 2.59
3574 3831 5.437060 ACAATGGTGATAATGTGGTACTCC 58.563 41.667 0.00 0.00 0.00 3.85
3575 3832 4.706842 ATGGTGATAATGTGGTACTCCC 57.293 45.455 0.00 0.00 0.00 4.30
3576 3833 3.731431 TGGTGATAATGTGGTACTCCCT 58.269 45.455 0.00 0.00 0.00 4.20
3577 3834 3.709653 TGGTGATAATGTGGTACTCCCTC 59.290 47.826 0.00 0.00 0.00 4.30
3578 3835 3.243771 GGTGATAATGTGGTACTCCCTCG 60.244 52.174 0.00 0.00 0.00 4.63
3579 3836 2.963101 TGATAATGTGGTACTCCCTCGG 59.037 50.000 0.00 0.00 0.00 4.63
3580 3837 2.537633 TAATGTGGTACTCCCTCGGT 57.462 50.000 0.00 0.00 0.00 4.69
3581 3838 1.192428 AATGTGGTACTCCCTCGGTC 58.808 55.000 0.00 0.00 0.00 4.79
3582 3839 0.335361 ATGTGGTACTCCCTCGGTCT 59.665 55.000 0.00 0.00 0.00 3.85
3583 3840 0.611062 TGTGGTACTCCCTCGGTCTG 60.611 60.000 0.00 0.00 0.00 3.51
3584 3841 1.000019 TGGTACTCCCTCGGTCTGG 60.000 63.158 0.00 0.00 0.00 3.86
3585 3842 1.305623 GGTACTCCCTCGGTCTGGA 59.694 63.158 0.00 0.00 0.00 3.86
3586 3843 0.324091 GGTACTCCCTCGGTCTGGAA 60.324 60.000 0.00 0.00 0.00 3.53
3587 3844 1.553706 GTACTCCCTCGGTCTGGAAA 58.446 55.000 0.00 0.00 0.00 3.13
3588 3845 2.108970 GTACTCCCTCGGTCTGGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
3589 3846 2.544844 ACTCCCTCGGTCTGGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
3590 3847 2.108970 ACTCCCTCGGTCTGGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
3591 3848 2.292323 ACTCCCTCGGTCTGGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
3592 3849 2.766828 CTCCCTCGGTCTGGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
3593 3850 2.500098 TCCCTCGGTCTGGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3594 3851 2.236395 CCCTCGGTCTGGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3595 3852 3.522553 CCTCGGTCTGGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3596 3853 3.522553 CTCGGTCTGGAAATACTTGTCC 58.477 50.000 0.00 0.00 0.00 4.02
3597 3854 3.170717 TCGGTCTGGAAATACTTGTCCT 58.829 45.455 0.00 0.00 34.77 3.85
3598 3855 3.194968 TCGGTCTGGAAATACTTGTCCTC 59.805 47.826 0.00 0.00 34.77 3.71
3599 3856 3.056107 CGGTCTGGAAATACTTGTCCTCA 60.056 47.826 0.00 0.00 34.77 3.86
3600 3857 4.562757 CGGTCTGGAAATACTTGTCCTCAA 60.563 45.833 0.00 0.00 34.77 3.02
3601 3858 5.313712 GGTCTGGAAATACTTGTCCTCAAA 58.686 41.667 0.00 0.00 34.77 2.69
3602 3859 5.768164 GGTCTGGAAATACTTGTCCTCAAAA 59.232 40.000 0.00 0.00 34.77 2.44
3603 3860 6.434340 GGTCTGGAAATACTTGTCCTCAAAAT 59.566 38.462 0.00 0.00 34.77 1.82
3604 3861 7.308435 GTCTGGAAATACTTGTCCTCAAAATG 58.692 38.462 0.00 0.00 34.77 2.32
3605 3862 6.434028 TCTGGAAATACTTGTCCTCAAAATGG 59.566 38.462 0.00 0.00 34.77 3.16
3606 3863 6.074648 TGGAAATACTTGTCCTCAAAATGGT 58.925 36.000 0.00 0.00 34.77 3.55
3607 3864 6.553100 TGGAAATACTTGTCCTCAAAATGGTT 59.447 34.615 0.00 0.00 34.77 3.67
3608 3865 6.868339 GGAAATACTTGTCCTCAAAATGGTTG 59.132 38.462 0.00 0.00 32.87 3.77
3609 3866 6.976934 AATACTTGTCCTCAAAATGGTTGT 57.023 33.333 0.00 0.00 32.87 3.32
3610 3867 8.472007 AAATACTTGTCCTCAAAATGGTTGTA 57.528 30.769 0.00 0.00 32.87 2.41
3611 3868 8.650143 AATACTTGTCCTCAAAATGGTTGTAT 57.350 30.769 0.00 0.00 32.87 2.29
3612 3869 6.575162 ACTTGTCCTCAAAATGGTTGTATC 57.425 37.500 0.00 0.00 32.87 2.24
3613 3870 6.306987 ACTTGTCCTCAAAATGGTTGTATCT 58.693 36.000 0.00 0.00 32.87 1.98
3614 3871 7.458397 ACTTGTCCTCAAAATGGTTGTATCTA 58.542 34.615 0.00 0.00 32.87 1.98
3615 3872 7.607991 ACTTGTCCTCAAAATGGTTGTATCTAG 59.392 37.037 0.00 0.00 32.87 2.43
3616 3873 7.252612 TGTCCTCAAAATGGTTGTATCTAGA 57.747 36.000 0.00 0.00 0.00 2.43
3617 3874 7.103641 TGTCCTCAAAATGGTTGTATCTAGAC 58.896 38.462 0.00 0.00 0.00 2.59
3618 3875 7.038302 TGTCCTCAAAATGGTTGTATCTAGACT 60.038 37.037 0.00 0.00 0.00 3.24
3619 3876 7.824779 GTCCTCAAAATGGTTGTATCTAGACTT 59.175 37.037 0.00 0.00 0.00 3.01
3620 3877 9.042450 TCCTCAAAATGGTTGTATCTAGACTTA 57.958 33.333 0.00 0.00 0.00 2.24
3621 3878 9.838339 CCTCAAAATGGTTGTATCTAGACTTAT 57.162 33.333 0.00 0.00 0.00 1.73
3661 3918 9.699410 ACATCCATTTTATTCATTTCTAGGACA 57.301 29.630 0.00 0.00 0.00 4.02
3664 3921 9.753674 TCCATTTTATTCATTTCTAGGACAAGT 57.246 29.630 0.00 0.00 0.00 3.16
3671 3928 7.843490 TTCATTTCTAGGACAAGTATTTCCG 57.157 36.000 0.00 0.00 36.95 4.30
3672 3929 6.346096 TCATTTCTAGGACAAGTATTTCCGG 58.654 40.000 0.00 0.00 36.95 5.14
3673 3930 6.155565 TCATTTCTAGGACAAGTATTTCCGGA 59.844 38.462 0.00 0.00 36.95 5.14
3674 3931 4.996788 TCTAGGACAAGTATTTCCGGAC 57.003 45.455 1.83 0.00 36.95 4.79
3675 3932 4.346730 TCTAGGACAAGTATTTCCGGACA 58.653 43.478 1.83 0.00 36.95 4.02
3676 3933 3.611766 AGGACAAGTATTTCCGGACAG 57.388 47.619 1.83 0.00 36.95 3.51
3677 3934 3.170717 AGGACAAGTATTTCCGGACAGA 58.829 45.455 1.83 0.00 36.95 3.41
3678 3935 3.195825 AGGACAAGTATTTCCGGACAGAG 59.804 47.826 1.83 0.00 36.95 3.35
3679 3936 3.522553 GACAAGTATTTCCGGACAGAGG 58.477 50.000 1.83 0.00 0.00 3.69
3680 3937 2.236395 ACAAGTATTTCCGGACAGAGGG 59.764 50.000 1.83 0.00 0.00 4.30
3681 3938 2.500098 CAAGTATTTCCGGACAGAGGGA 59.500 50.000 1.83 0.00 0.00 4.20
3708 3965 4.508861 TCTGCGTTGTTCTTTACACTAACC 59.491 41.667 0.00 0.00 36.21 2.85
3860 4117 0.878523 GCGGGCTATCGTTATGTGCA 60.879 55.000 0.00 0.00 0.00 4.57
3944 4207 5.873179 TTGCGGTTTGTAGAGGAAATAAG 57.127 39.130 0.00 0.00 0.00 1.73
3948 4211 5.163784 GCGGTTTGTAGAGGAAATAAGGAAC 60.164 44.000 0.00 0.00 0.00 3.62
4374 4643 1.961394 TGGCCGTCCTGTATAGCTAAG 59.039 52.381 0.00 0.00 0.00 2.18
4386 4663 6.550108 CCTGTATAGCTAAGTCCTTCCAGTAA 59.450 42.308 0.00 0.00 0.00 2.24
4387 4664 7.255660 CCTGTATAGCTAAGTCCTTCCAGTAAG 60.256 44.444 0.00 0.00 34.73 2.34
4388 4665 7.124052 TGTATAGCTAAGTCCTTCCAGTAAGT 58.876 38.462 0.00 0.00 32.89 2.24
4443 5977 2.227194 GTCTGGTGTGTAGTTTTGGGG 58.773 52.381 0.00 0.00 0.00 4.96
4503 6037 1.285962 CCAGGGGATTTGATCACTGGT 59.714 52.381 16.13 0.00 44.34 4.00
4543 6077 1.205655 TCTCGATGGTTTGGCAGAGAG 59.794 52.381 0.00 0.00 31.93 3.20
4567 6101 2.813172 TGCGATCACAAAGAAGATGCAA 59.187 40.909 0.00 0.00 30.83 4.08
4586 6132 4.458642 TGCAAACACATACAGTATGCACAT 59.541 37.500 18.99 2.67 42.53 3.21
4587 6133 4.794762 GCAAACACATACAGTATGCACATG 59.205 41.667 18.99 12.52 42.53 3.21
4607 6387 4.150897 TGTCTACATGTTCCTTATGCCC 57.849 45.455 2.30 0.00 0.00 5.36
4621 6401 2.220653 ATGCCCTGTACAATGCAAGT 57.779 45.000 19.31 5.16 37.27 3.16
4628 6408 3.365666 CCTGTACAATGCAAGTTGCTCAG 60.366 47.826 27.17 21.13 45.31 3.35
4634 6414 0.538057 TGCAAGTTGCTCAGGGAAGG 60.538 55.000 27.17 0.00 45.31 3.46
4718 6503 4.627015 TCTTAATTAGGCACCCCTGTAGA 58.373 43.478 0.00 0.00 42.90 2.59
4733 6518 3.305676 CCTGTAGAGATAAGCACGGATGG 60.306 52.174 0.00 0.00 0.00 3.51
4796 6871 5.662674 AGGGAGTATGTGTTAGAACTGTC 57.337 43.478 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.381327 CAGGTTCGGGCCCTCTCTA 60.381 63.158 22.43 0.00 0.00 2.43
1 2 2.685380 CAGGTTCGGGCCCTCTCT 60.685 66.667 22.43 9.12 0.00 3.10
2 3 3.787001 CCAGGTTCGGGCCCTCTC 61.787 72.222 22.43 9.34 0.00 3.20
9 10 1.379527 GATGTTTAGCCAGGTTCGGG 58.620 55.000 0.00 0.00 0.00 5.14
10 11 1.006832 CGATGTTTAGCCAGGTTCGG 58.993 55.000 0.00 0.00 0.00 4.30
11 12 1.006832 CCGATGTTTAGCCAGGTTCG 58.993 55.000 0.00 0.00 0.00 3.95
12 13 1.065709 TCCCGATGTTTAGCCAGGTTC 60.066 52.381 0.00 0.00 0.00 3.62
13 14 0.988832 TCCCGATGTTTAGCCAGGTT 59.011 50.000 0.00 0.00 0.00 3.50
14 15 1.134098 CATCCCGATGTTTAGCCAGGT 60.134 52.381 0.00 0.00 34.23 4.00
15 16 1.597742 CATCCCGATGTTTAGCCAGG 58.402 55.000 0.00 0.00 34.23 4.45
30 31 2.732619 GGAGACGGGGGACACATCC 61.733 68.421 0.00 0.00 45.42 3.51
31 32 1.686110 AGGAGACGGGGGACACATC 60.686 63.158 0.00 0.00 0.00 3.06
32 33 1.990060 CAGGAGACGGGGGACACAT 60.990 63.158 0.00 0.00 0.00 3.21
33 34 2.603473 CAGGAGACGGGGGACACA 60.603 66.667 0.00 0.00 0.00 3.72
34 35 0.901580 TAACAGGAGACGGGGGACAC 60.902 60.000 0.00 0.00 0.00 3.67
35 36 0.901580 GTAACAGGAGACGGGGGACA 60.902 60.000 0.00 0.00 0.00 4.02
36 37 1.611474 GGTAACAGGAGACGGGGGAC 61.611 65.000 0.00 0.00 0.00 4.46
37 38 1.305549 GGTAACAGGAGACGGGGGA 60.306 63.158 0.00 0.00 0.00 4.81
38 39 1.611261 TGGTAACAGGAGACGGGGG 60.611 63.158 0.00 0.00 46.17 5.40
39 40 4.123571 TGGTAACAGGAGACGGGG 57.876 61.111 0.00 0.00 46.17 5.73
50 51 2.159338 TGCGTCTAAGGTCGATGGTAAC 60.159 50.000 0.00 0.00 0.00 2.50
51 52 2.093890 TGCGTCTAAGGTCGATGGTAA 58.906 47.619 0.00 0.00 0.00 2.85
52 53 1.402968 GTGCGTCTAAGGTCGATGGTA 59.597 52.381 0.00 0.00 0.00 3.25
53 54 0.172803 GTGCGTCTAAGGTCGATGGT 59.827 55.000 0.00 0.00 0.00 3.55
54 55 0.172578 TGTGCGTCTAAGGTCGATGG 59.827 55.000 0.00 0.00 0.00 3.51
55 56 1.135373 ACTGTGCGTCTAAGGTCGATG 60.135 52.381 0.00 0.00 0.00 3.84
56 57 1.174783 ACTGTGCGTCTAAGGTCGAT 58.825 50.000 0.00 0.00 0.00 3.59
57 58 0.956633 AACTGTGCGTCTAAGGTCGA 59.043 50.000 0.00 0.00 0.00 4.20
58 59 1.337821 GAACTGTGCGTCTAAGGTCG 58.662 55.000 0.00 0.00 0.00 4.79
59 60 1.337821 CGAACTGTGCGTCTAAGGTC 58.662 55.000 0.00 0.00 0.00 3.85
60 61 0.038526 CCGAACTGTGCGTCTAAGGT 60.039 55.000 7.51 0.00 0.00 3.50
61 62 0.736325 CCCGAACTGTGCGTCTAAGG 60.736 60.000 7.51 0.00 0.00 2.69
62 63 0.242825 TCCCGAACTGTGCGTCTAAG 59.757 55.000 7.51 0.00 0.00 2.18
63 64 0.038892 GTCCCGAACTGTGCGTCTAA 60.039 55.000 7.51 0.00 0.00 2.10
64 65 1.582968 GTCCCGAACTGTGCGTCTA 59.417 57.895 7.51 0.00 0.00 2.59
65 66 2.338984 GTCCCGAACTGTGCGTCT 59.661 61.111 7.51 0.00 0.00 4.18
66 67 2.737376 GGTCCCGAACTGTGCGTC 60.737 66.667 7.51 0.00 0.00 5.19
67 68 4.309950 GGGTCCCGAACTGTGCGT 62.310 66.667 7.51 0.00 0.00 5.24
69 70 4.717313 GGGGGTCCCGAACTGTGC 62.717 72.222 0.48 0.00 36.85 4.57
78 79 1.074699 ATCTCGGTTAGGGGGTCCC 60.075 63.158 0.00 0.00 45.90 4.46
79 80 1.120184 GGATCTCGGTTAGGGGGTCC 61.120 65.000 0.00 0.00 0.00 4.46
80 81 1.461911 CGGATCTCGGTTAGGGGGTC 61.462 65.000 0.00 0.00 34.75 4.46
81 82 1.457079 CGGATCTCGGTTAGGGGGT 60.457 63.158 0.00 0.00 34.75 4.95
82 83 2.868986 GCGGATCTCGGTTAGGGGG 61.869 68.421 5.87 0.00 39.69 5.40
83 84 2.735237 GCGGATCTCGGTTAGGGG 59.265 66.667 5.87 0.00 39.69 4.79
84 85 2.735237 GGCGGATCTCGGTTAGGG 59.265 66.667 5.87 0.00 39.69 3.53
85 86 2.335369 CGGCGGATCTCGGTTAGG 59.665 66.667 0.00 0.00 39.69 2.69
86 87 2.335369 CCGGCGGATCTCGGTTAG 59.665 66.667 24.41 0.00 41.23 2.34
91 92 1.447140 TCAAAACCGGCGGATCTCG 60.447 57.895 35.78 16.34 42.76 4.04
92 93 0.672401 TGTCAAAACCGGCGGATCTC 60.672 55.000 35.78 16.90 0.00 2.75
93 94 0.953960 GTGTCAAAACCGGCGGATCT 60.954 55.000 35.78 13.84 0.00 2.75
94 95 1.231958 TGTGTCAAAACCGGCGGATC 61.232 55.000 35.78 9.52 0.00 3.36
95 96 1.228003 TGTGTCAAAACCGGCGGAT 60.228 52.632 35.78 20.37 0.00 4.18
96 97 1.890041 CTGTGTCAAAACCGGCGGA 60.890 57.895 35.78 6.54 0.00 5.54
97 98 1.890041 TCTGTGTCAAAACCGGCGG 60.890 57.895 27.06 27.06 0.00 6.13
98 99 1.278637 GTCTGTGTCAAAACCGGCG 59.721 57.895 0.00 0.00 0.00 6.46
99 100 1.278637 CGTCTGTGTCAAAACCGGC 59.721 57.895 0.00 0.00 0.00 6.13
100 101 0.812412 ACCGTCTGTGTCAAAACCGG 60.812 55.000 0.00 0.00 39.75 5.28
101 102 0.580104 GACCGTCTGTGTCAAAACCG 59.420 55.000 0.00 0.00 32.91 4.44
102 103 1.949465 AGACCGTCTGTGTCAAAACC 58.051 50.000 0.00 0.00 35.15 3.27
103 104 2.798847 GGTAGACCGTCTGTGTCAAAAC 59.201 50.000 11.52 0.00 35.15 2.43
104 105 2.224113 GGGTAGACCGTCTGTGTCAAAA 60.224 50.000 11.52 0.00 35.15 2.44
105 106 1.342174 GGGTAGACCGTCTGTGTCAAA 59.658 52.381 11.52 0.00 35.15 2.69
106 107 0.963962 GGGTAGACCGTCTGTGTCAA 59.036 55.000 11.52 0.00 35.15 3.18
107 108 0.111832 AGGGTAGACCGTCTGTGTCA 59.888 55.000 11.52 0.00 46.96 3.58
108 109 0.810016 GAGGGTAGACCGTCTGTGTC 59.190 60.000 11.52 0.00 44.98 3.67
109 110 0.611340 GGAGGGTAGACCGTCTGTGT 60.611 60.000 18.24 0.00 46.91 3.72
110 111 0.611062 TGGAGGGTAGACCGTCTGTG 60.611 60.000 18.24 0.00 46.91 3.66
111 112 0.611340 GTGGAGGGTAGACCGTCTGT 60.611 60.000 18.24 0.00 46.91 3.41
112 113 1.321074 GGTGGAGGGTAGACCGTCTG 61.321 65.000 18.24 0.00 46.91 3.51
113 114 1.000107 GGTGGAGGGTAGACCGTCT 60.000 63.158 18.24 6.25 46.91 4.18
115 116 1.608627 GTGGTGGAGGGTAGACCGT 60.609 63.158 0.00 0.00 46.96 4.83
116 117 2.356780 GGTGGTGGAGGGTAGACCG 61.357 68.421 0.00 0.00 46.96 4.79
117 118 2.356780 CGGTGGTGGAGGGTAGACC 61.357 68.421 0.00 0.00 40.67 3.85
118 119 3.015312 GCGGTGGTGGAGGGTAGAC 62.015 68.421 0.00 0.00 0.00 2.59
119 120 2.682494 GCGGTGGTGGAGGGTAGA 60.682 66.667 0.00 0.00 0.00 2.59
120 121 3.782443 GGCGGTGGTGGAGGGTAG 61.782 72.222 0.00 0.00 0.00 3.18
121 122 4.326227 AGGCGGTGGTGGAGGGTA 62.326 66.667 0.00 0.00 0.00 3.69
124 125 3.775654 GAGAGGCGGTGGTGGAGG 61.776 72.222 0.00 0.00 0.00 4.30
125 126 3.775654 GGAGAGGCGGTGGTGGAG 61.776 72.222 0.00 0.00 0.00 3.86
139 140 4.479993 CTTGGGCTGCTCCGGGAG 62.480 72.222 19.95 19.95 34.94 4.30
181 182 1.297664 CTAGTACCTCTCGTGGACGG 58.702 60.000 0.00 0.00 40.29 4.79
184 185 2.836372 TCTCACTAGTACCTCTCGTGGA 59.164 50.000 0.00 0.00 39.39 4.02
187 188 2.171027 CCCTCTCACTAGTACCTCTCGT 59.829 54.545 0.00 0.00 0.00 4.18
198 200 1.532604 CGCACCACACCCTCTCACTA 61.533 60.000 0.00 0.00 0.00 2.74
200 202 2.357517 CGCACCACACCCTCTCAC 60.358 66.667 0.00 0.00 0.00 3.51
203 205 4.954118 TCCCGCACCACACCCTCT 62.954 66.667 0.00 0.00 0.00 3.69
264 266 3.541713 GAGGTAGGCCGCCTCCTG 61.542 72.222 28.49 0.00 45.05 3.86
363 368 4.899239 CATCCTCGCGCTCCCACC 62.899 72.222 5.56 0.00 0.00 4.61
428 450 4.446413 AGAAAGCCCGCGGGTACG 62.446 66.667 42.53 20.38 44.63 3.67
463 485 2.216148 CCCTAGGAGTCAAGGGCAG 58.784 63.158 11.48 0.00 45.91 4.85
468 490 0.460987 CGCAAGCCCTAGGAGTCAAG 60.461 60.000 11.48 0.00 0.00 3.02
473 495 4.554036 GCCCGCAAGCCCTAGGAG 62.554 72.222 11.48 1.06 0.00 3.69
531 553 7.094805 TGCTGAGTCCACTTCAAACATAATTAC 60.095 37.037 0.00 0.00 0.00 1.89
534 556 5.316167 TGCTGAGTCCACTTCAAACATAAT 58.684 37.500 0.00 0.00 0.00 1.28
554 576 3.640967 TCAAATTAAAGCCCACAACTGCT 59.359 39.130 0.00 0.00 40.17 4.24
555 577 3.988819 TCAAATTAAAGCCCACAACTGC 58.011 40.909 0.00 0.00 0.00 4.40
557 579 6.173427 ACATTCAAATTAAAGCCCACAACT 57.827 33.333 0.00 0.00 0.00 3.16
558 580 6.859420 AACATTCAAATTAAAGCCCACAAC 57.141 33.333 0.00 0.00 0.00 3.32
559 581 8.964476 TTAAACATTCAAATTAAAGCCCACAA 57.036 26.923 0.00 0.00 0.00 3.33
560 582 9.566432 AATTAAACATTCAAATTAAAGCCCACA 57.434 25.926 0.00 0.00 0.00 4.17
639 661 0.643820 CGACCGACGCATTTTAGTCC 59.356 55.000 0.00 0.00 34.10 3.85
656 679 3.353029 CATGTGCACCCAACGCGA 61.353 61.111 15.93 0.00 0.00 5.87
659 682 4.403137 CGGCATGTGCACCCAACG 62.403 66.667 15.69 10.41 44.36 4.10
665 688 0.378257 ATTTCGATCGGCATGTGCAC 59.622 50.000 16.41 10.75 44.36 4.57
673 696 1.395608 TCGGTTTTGATTTCGATCGGC 59.604 47.619 16.41 3.37 0.00 5.54
674 697 3.120477 TGTTCGGTTTTGATTTCGATCGG 60.120 43.478 16.41 0.00 0.00 4.18
680 703 4.208253 ACGCAAATGTTCGGTTTTGATTTC 59.792 37.500 0.00 0.00 35.34 2.17
685 708 3.061429 ACAAACGCAAATGTTCGGTTTTG 59.939 39.130 0.00 0.00 32.81 2.44
686 709 3.254892 ACAAACGCAAATGTTCGGTTTT 58.745 36.364 0.00 0.00 32.81 2.43
693 717 1.202359 AGCCGAACAAACGCAAATGTT 60.202 42.857 0.00 0.00 42.18 2.71
697 721 1.268640 GGTTAGCCGAACAAACGCAAA 60.269 47.619 1.88 0.00 40.09 3.68
698 722 0.308376 GGTTAGCCGAACAAACGCAA 59.692 50.000 1.88 0.00 40.09 4.85
705 729 1.074084 TCCATTTGGGTTAGCCGAACA 59.926 47.619 5.13 0.00 40.09 3.18
707 731 1.074084 TGTCCATTTGGGTTAGCCGAA 59.926 47.619 5.52 5.52 38.11 4.30
709 733 1.540267 TTGTCCATTTGGGTTAGCCG 58.460 50.000 0.00 0.00 38.11 5.52
710 734 3.070302 TGTTTTGTCCATTTGGGTTAGCC 59.930 43.478 0.00 0.00 38.11 3.93
714 738 4.223923 TGTCTTGTTTTGTCCATTTGGGTT 59.776 37.500 0.00 0.00 38.11 4.11
716 740 4.399004 TGTCTTGTTTTGTCCATTTGGG 57.601 40.909 0.00 0.00 35.41 4.12
717 741 6.734104 TTTTGTCTTGTTTTGTCCATTTGG 57.266 33.333 0.00 0.00 0.00 3.28
722 746 4.238514 CGGTTTTTGTCTTGTTTTGTCCA 58.761 39.130 0.00 0.00 0.00 4.02
731 755 0.656205 CGGACGCGGTTTTTGTCTTG 60.656 55.000 12.47 0.00 33.21 3.02
733 757 1.091197 AACGGACGCGGTTTTTGTCT 61.091 50.000 12.47 0.00 33.21 3.41
756 781 2.127758 CAACTTCAACGCGCCGAC 60.128 61.111 5.73 0.00 0.00 4.79
757 782 4.007940 GCAACTTCAACGCGCCGA 62.008 61.111 5.73 0.00 0.00 5.54
760 785 1.847890 TTAGGGCAACTTCAACGCGC 61.848 55.000 5.73 0.00 38.75 6.86
761 786 0.802494 ATTAGGGCAACTTCAACGCG 59.198 50.000 3.53 3.53 0.00 6.01
762 787 1.135402 CCATTAGGGCAACTTCAACGC 60.135 52.381 0.00 0.00 0.00 4.84
763 788 2.919666 CCATTAGGGCAACTTCAACG 57.080 50.000 0.00 0.00 0.00 4.10
775 800 0.397535 ATTGCCACCCTGCCATTAGG 60.398 55.000 0.00 0.00 37.59 2.69
776 801 1.956477 GTATTGCCACCCTGCCATTAG 59.044 52.381 0.00 0.00 0.00 1.73
777 802 1.286257 TGTATTGCCACCCTGCCATTA 59.714 47.619 0.00 0.00 0.00 1.90
778 803 0.040942 TGTATTGCCACCCTGCCATT 59.959 50.000 0.00 0.00 0.00 3.16
779 804 0.684153 GTGTATTGCCACCCTGCCAT 60.684 55.000 0.00 0.00 0.00 4.40
780 805 1.304052 GTGTATTGCCACCCTGCCA 60.304 57.895 0.00 0.00 0.00 4.92
781 806 2.406616 CGTGTATTGCCACCCTGCC 61.407 63.158 0.00 0.00 31.47 4.85
782 807 1.674322 ACGTGTATTGCCACCCTGC 60.674 57.895 0.00 0.00 31.47 4.85
783 808 1.305219 CCACGTGTATTGCCACCCTG 61.305 60.000 15.65 0.00 31.47 4.45
784 809 1.002624 CCACGTGTATTGCCACCCT 60.003 57.895 15.65 0.00 31.47 4.34
798 823 1.455786 CAGTCGTCTTTAAGTGCCACG 59.544 52.381 0.00 0.00 0.00 4.94
799 824 1.798813 CCAGTCGTCTTTAAGTGCCAC 59.201 52.381 0.00 0.00 0.00 5.01
848 913 4.745125 CGGTATCGTGCAGTCATTTTCTAT 59.255 41.667 0.00 0.00 0.00 1.98
889 965 2.343426 GGGGAAAAAGGAGCGCCTG 61.343 63.158 10.77 0.00 46.28 4.85
891 967 2.035783 AGGGGAAAAAGGAGCGCC 59.964 61.111 2.29 0.00 35.10 6.53
892 968 1.303317 TGAGGGGAAAAAGGAGCGC 60.303 57.895 0.00 0.00 0.00 5.92
893 969 0.036875 AGTGAGGGGAAAAAGGAGCG 59.963 55.000 0.00 0.00 0.00 5.03
894 970 1.352687 AGAGTGAGGGGAAAAAGGAGC 59.647 52.381 0.00 0.00 0.00 4.70
903 979 1.566703 CAGAGGACTAGAGTGAGGGGA 59.433 57.143 0.00 0.00 0.00 4.81
975 1052 3.249687 GGCTTGGTTTCCGATCTGT 57.750 52.632 0.00 0.00 0.00 3.41
1531 1608 4.411256 AAAACGGTCTACCACTTCTTCA 57.589 40.909 0.00 0.00 35.14 3.02
1565 1642 3.119291 CAGAAACATACGAGCTAGCCTG 58.881 50.000 12.13 6.69 0.00 4.85
1634 1818 3.423539 TTGTGAGGGTTCATGAGGAAG 57.576 47.619 0.00 0.00 35.82 3.46
1645 1829 5.241728 GCAGAATCTAACTTTTTGTGAGGGT 59.758 40.000 0.00 0.00 0.00 4.34
1708 1924 4.455877 CGTTAAAGAGGGCTCAAATCAACT 59.544 41.667 0.00 0.00 0.00 3.16
1727 1943 4.273724 TGCAACTGAACATTTACAGCGTTA 59.726 37.500 0.00 0.00 37.61 3.18
1731 1947 3.735746 GGTTGCAACTGAACATTTACAGC 59.264 43.478 27.64 3.39 37.61 4.40
1871 2088 7.333423 GCAGTCAGTACACCATATCTTTTGTTA 59.667 37.037 0.00 0.00 0.00 2.41
1995 2212 8.382405 TGCCTGGTTTGAGATATAGCATTAATA 58.618 33.333 0.00 0.00 0.00 0.98
2216 2433 5.305644 AGCATGTTATTCTACCACTAGAGGG 59.694 44.000 11.20 7.36 30.31 4.30
2217 2434 6.412362 AGCATGTTATTCTACCACTAGAGG 57.588 41.667 4.44 4.44 30.31 3.69
2309 2546 6.403092 CCGAGTTGACATTGCATGTGTATTTA 60.403 38.462 5.35 0.00 45.03 1.40
2396 2633 8.506437 TGTATCAAATCTCTCAACAATCACAAC 58.494 33.333 0.00 0.00 0.00 3.32
2495 2732 7.679638 GCATCAGCAACGGAGAATAGTTAATTT 60.680 37.037 0.00 0.00 41.58 1.82
2593 2830 9.859427 TTTTCATGCTAGTGGATCATTTTAAAG 57.141 29.630 0.00 0.00 0.00 1.85
2712 2966 4.660168 ACAGAGTCCAGCATTCAGAATTT 58.340 39.130 0.00 0.00 0.00 1.82
2769 3023 0.995675 ACCTATGCCCCAGCTCCATT 60.996 55.000 0.00 0.00 40.80 3.16
2775 3029 1.341209 GCATTAAACCTATGCCCCAGC 59.659 52.381 0.00 0.00 41.94 4.85
2776 3030 1.608590 CGCATTAAACCTATGCCCCAG 59.391 52.381 0.00 0.00 44.25 4.45
2777 3031 1.686355 CGCATTAAACCTATGCCCCA 58.314 50.000 0.00 0.00 44.25 4.96
2778 3032 0.313987 GCGCATTAAACCTATGCCCC 59.686 55.000 0.30 0.00 44.25 5.80
2779 3033 0.313987 GGCGCATTAAACCTATGCCC 59.686 55.000 10.83 0.00 44.25 5.36
2780 3034 1.028905 TGGCGCATTAAACCTATGCC 58.971 50.000 10.83 0.00 44.25 4.40
2781 3035 2.034558 ACATGGCGCATTAAACCTATGC 59.965 45.455 10.83 0.00 43.80 3.14
2782 3036 3.988379 ACATGGCGCATTAAACCTATG 57.012 42.857 10.83 1.86 0.00 2.23
2783 3037 6.264292 TGATTTACATGGCGCATTAAACCTAT 59.736 34.615 10.83 0.00 0.00 2.57
2784 3038 5.590663 TGATTTACATGGCGCATTAAACCTA 59.409 36.000 10.83 0.00 0.00 3.08
2785 3039 4.400884 TGATTTACATGGCGCATTAAACCT 59.599 37.500 10.83 0.00 0.00 3.50
2786 3040 4.677584 TGATTTACATGGCGCATTAAACC 58.322 39.130 10.83 0.00 0.00 3.27
2787 3041 6.639671 TTTGATTTACATGGCGCATTAAAC 57.360 33.333 10.83 0.00 0.00 2.01
2788 3042 7.840342 ATTTTGATTTACATGGCGCATTAAA 57.160 28.000 10.83 7.07 0.00 1.52
2789 3043 8.932945 TTATTTTGATTTACATGGCGCATTAA 57.067 26.923 10.83 0.00 0.00 1.40
2790 3044 8.932945 TTTATTTTGATTTACATGGCGCATTA 57.067 26.923 10.83 0.00 0.00 1.90
2791 3045 7.840342 TTTATTTTGATTTACATGGCGCATT 57.160 28.000 10.83 0.00 0.00 3.56
2792 3046 7.840342 TTTTATTTTGATTTACATGGCGCAT 57.160 28.000 10.83 0.00 0.00 4.73
2793 3047 7.675870 GCATTTTATTTTGATTTACATGGCGCA 60.676 33.333 10.83 0.00 0.00 6.09
2794 3048 6.628461 GCATTTTATTTTGATTTACATGGCGC 59.372 34.615 0.00 0.00 0.00 6.53
2795 3049 7.908230 AGCATTTTATTTTGATTTACATGGCG 58.092 30.769 0.00 0.00 0.00 5.69
2824 3078 9.019656 ACATGTTCAATTAGCCTATTGTTGTAA 57.980 29.630 0.00 0.00 36.95 2.41
2825 3079 8.458052 CACATGTTCAATTAGCCTATTGTTGTA 58.542 33.333 0.00 0.00 36.95 2.41
2826 3080 7.176515 TCACATGTTCAATTAGCCTATTGTTGT 59.823 33.333 0.00 6.05 36.95 3.32
2827 3081 7.537715 TCACATGTTCAATTAGCCTATTGTTG 58.462 34.615 0.00 5.61 36.95 3.33
2828 3082 7.701539 TCACATGTTCAATTAGCCTATTGTT 57.298 32.000 0.00 0.00 36.95 2.83
2829 3083 7.886629 ATCACATGTTCAATTAGCCTATTGT 57.113 32.000 0.00 0.00 36.95 2.71
2830 3084 9.590451 AAAATCACATGTTCAATTAGCCTATTG 57.410 29.630 0.00 2.73 36.95 1.90
2831 3085 9.590451 CAAAATCACATGTTCAATTAGCCTATT 57.410 29.630 0.00 0.00 0.00 1.73
2832 3086 8.199449 CCAAAATCACATGTTCAATTAGCCTAT 58.801 33.333 0.00 0.00 0.00 2.57
2833 3087 7.395772 TCCAAAATCACATGTTCAATTAGCCTA 59.604 33.333 0.00 0.00 0.00 3.93
2834 3088 6.211184 TCCAAAATCACATGTTCAATTAGCCT 59.789 34.615 0.00 0.00 0.00 4.58
2835 3089 6.397272 TCCAAAATCACATGTTCAATTAGCC 58.603 36.000 0.00 0.00 0.00 3.93
2836 3090 7.887996 TTCCAAAATCACATGTTCAATTAGC 57.112 32.000 0.00 0.00 0.00 3.09
2838 3092 9.775854 ACATTTCCAAAATCACATGTTCAATTA 57.224 25.926 0.00 0.00 0.00 1.40
2839 3093 8.680039 ACATTTCCAAAATCACATGTTCAATT 57.320 26.923 0.00 0.00 0.00 2.32
2840 3094 8.680039 AACATTTCCAAAATCACATGTTCAAT 57.320 26.923 0.00 0.00 30.75 2.57
2841 3095 9.775854 ATAACATTTCCAAAATCACATGTTCAA 57.224 25.926 0.00 0.00 36.50 2.69
2842 3096 9.205719 CATAACATTTCCAAAATCACATGTTCA 57.794 29.630 0.00 0.00 36.50 3.18
2843 3097 8.658609 CCATAACATTTCCAAAATCACATGTTC 58.341 33.333 0.00 0.00 36.50 3.18
2844 3098 7.119553 GCCATAACATTTCCAAAATCACATGTT 59.880 33.333 0.00 0.00 38.21 2.71
2845 3099 6.594937 GCCATAACATTTCCAAAATCACATGT 59.405 34.615 0.00 0.00 0.00 3.21
2846 3100 6.037391 GGCCATAACATTTCCAAAATCACATG 59.963 38.462 0.00 0.00 0.00 3.21
2847 3101 6.114767 GGCCATAACATTTCCAAAATCACAT 58.885 36.000 0.00 0.00 0.00 3.21
2848 3102 5.486526 GGCCATAACATTTCCAAAATCACA 58.513 37.500 0.00 0.00 0.00 3.58
2849 3103 4.566360 CGGCCATAACATTTCCAAAATCAC 59.434 41.667 2.24 0.00 0.00 3.06
2850 3104 4.464244 TCGGCCATAACATTTCCAAAATCA 59.536 37.500 2.24 0.00 0.00 2.57
2851 3105 5.004922 TCGGCCATAACATTTCCAAAATC 57.995 39.130 2.24 0.00 0.00 2.17
2852 3106 5.413309 TTCGGCCATAACATTTCCAAAAT 57.587 34.783 2.24 0.00 0.00 1.82
2853 3107 4.322349 CCTTCGGCCATAACATTTCCAAAA 60.322 41.667 2.24 0.00 0.00 2.44
2854 3108 3.194542 CCTTCGGCCATAACATTTCCAAA 59.805 43.478 2.24 0.00 0.00 3.28
2855 3109 2.757868 CCTTCGGCCATAACATTTCCAA 59.242 45.455 2.24 0.00 0.00 3.53
2856 3110 2.025793 TCCTTCGGCCATAACATTTCCA 60.026 45.455 2.24 0.00 0.00 3.53
2857 3111 2.618709 CTCCTTCGGCCATAACATTTCC 59.381 50.000 2.24 0.00 0.00 3.13
2858 3112 2.033424 GCTCCTTCGGCCATAACATTTC 59.967 50.000 2.24 0.00 0.00 2.17
2859 3113 2.024414 GCTCCTTCGGCCATAACATTT 58.976 47.619 2.24 0.00 0.00 2.32
2860 3114 1.212935 AGCTCCTTCGGCCATAACATT 59.787 47.619 2.24 0.00 0.00 2.71
2861 3115 0.839946 AGCTCCTTCGGCCATAACAT 59.160 50.000 2.24 0.00 0.00 2.71
2862 3116 0.618458 AAGCTCCTTCGGCCATAACA 59.382 50.000 2.24 0.00 0.00 2.41
2863 3117 2.614829 TAAGCTCCTTCGGCCATAAC 57.385 50.000 2.24 0.00 0.00 1.89
2864 3118 2.703536 TCATAAGCTCCTTCGGCCATAA 59.296 45.455 2.24 0.00 0.00 1.90
2865 3119 2.325484 TCATAAGCTCCTTCGGCCATA 58.675 47.619 2.24 0.00 0.00 2.74
2866 3120 1.131638 TCATAAGCTCCTTCGGCCAT 58.868 50.000 2.24 0.00 0.00 4.40
2867 3121 0.908910 TTCATAAGCTCCTTCGGCCA 59.091 50.000 2.24 0.00 0.00 5.36
2868 3122 2.147150 GATTCATAAGCTCCTTCGGCC 58.853 52.381 0.00 0.00 0.00 6.13
2869 3123 2.805099 CTGATTCATAAGCTCCTTCGGC 59.195 50.000 0.00 0.00 0.00 5.54
2870 3124 3.806521 CACTGATTCATAAGCTCCTTCGG 59.193 47.826 0.00 0.00 0.00 4.30
2871 3125 4.437239 ACACTGATTCATAAGCTCCTTCG 58.563 43.478 0.00 0.00 0.00 3.79
2872 3126 6.150140 ACAAACACTGATTCATAAGCTCCTTC 59.850 38.462 0.00 0.00 0.00 3.46
2873 3127 6.006449 ACAAACACTGATTCATAAGCTCCTT 58.994 36.000 0.00 0.00 0.00 3.36
2874 3128 5.564550 ACAAACACTGATTCATAAGCTCCT 58.435 37.500 0.00 0.00 0.00 3.69
2875 3129 5.886960 ACAAACACTGATTCATAAGCTCC 57.113 39.130 0.00 0.00 0.00 4.70
2876 3130 8.507249 AGTTTACAAACACTGATTCATAAGCTC 58.493 33.333 7.53 0.00 41.30 4.09
2877 3131 8.292448 CAGTTTACAAACACTGATTCATAAGCT 58.708 33.333 7.53 0.00 42.74 3.74
2878 3132 7.538678 CCAGTTTACAAACACTGATTCATAAGC 59.461 37.037 7.53 0.00 42.74 3.09
2879 3133 8.567948 ACCAGTTTACAAACACTGATTCATAAG 58.432 33.333 7.53 0.00 42.74 1.73
2880 3134 8.458573 ACCAGTTTACAAACACTGATTCATAA 57.541 30.769 7.53 0.00 42.74 1.90
2881 3135 8.349245 CAACCAGTTTACAAACACTGATTCATA 58.651 33.333 7.53 0.00 42.74 2.15
2882 3136 6.959639 ACCAGTTTACAAACACTGATTCAT 57.040 33.333 7.53 0.00 42.74 2.57
2883 3137 6.405286 CCAACCAGTTTACAAACACTGATTCA 60.405 38.462 7.53 0.00 42.74 2.57
2884 3138 5.977129 CCAACCAGTTTACAAACACTGATTC 59.023 40.000 7.53 0.00 42.74 2.52
2885 3139 5.420739 ACCAACCAGTTTACAAACACTGATT 59.579 36.000 7.53 0.00 42.74 2.57
2886 3140 4.953579 ACCAACCAGTTTACAAACACTGAT 59.046 37.500 7.53 0.00 42.74 2.90
2887 3141 4.337145 ACCAACCAGTTTACAAACACTGA 58.663 39.130 7.53 0.00 42.74 3.41
2888 3142 4.712122 ACCAACCAGTTTACAAACACTG 57.288 40.909 7.53 0.00 41.30 3.66
2889 3143 7.412853 AATAACCAACCAGTTTACAAACACT 57.587 32.000 7.53 0.00 41.30 3.55
2890 3144 8.481974 AAAATAACCAACCAGTTTACAAACAC 57.518 30.769 7.53 0.00 41.30 3.32
2913 3167 9.912634 CAGAGTCCAGCATTTAGAATTTTAAAA 57.087 29.630 2.51 2.51 0.00 1.52
2914 3168 9.077885 ACAGAGTCCAGCATTTAGAATTTTAAA 57.922 29.630 3.86 3.86 0.00 1.52
2915 3169 8.635765 ACAGAGTCCAGCATTTAGAATTTTAA 57.364 30.769 0.00 0.00 0.00 1.52
2916 3170 8.635765 AACAGAGTCCAGCATTTAGAATTTTA 57.364 30.769 0.00 0.00 0.00 1.52
2917 3171 7.530426 AACAGAGTCCAGCATTTAGAATTTT 57.470 32.000 0.00 0.00 0.00 1.82
2918 3172 7.373493 CAAACAGAGTCCAGCATTTAGAATTT 58.627 34.615 0.00 0.00 0.00 1.82
2919 3173 6.571150 GCAAACAGAGTCCAGCATTTAGAATT 60.571 38.462 0.00 0.00 0.00 2.17
2920 3174 5.105997 GCAAACAGAGTCCAGCATTTAGAAT 60.106 40.000 0.00 0.00 0.00 2.40
2921 3175 4.216257 GCAAACAGAGTCCAGCATTTAGAA 59.784 41.667 0.00 0.00 0.00 2.10
2922 3176 3.753272 GCAAACAGAGTCCAGCATTTAGA 59.247 43.478 0.00 0.00 0.00 2.10
2923 3177 3.503363 TGCAAACAGAGTCCAGCATTTAG 59.497 43.478 0.00 0.00 0.00 1.85
2924 3178 3.253188 GTGCAAACAGAGTCCAGCATTTA 59.747 43.478 0.00 0.00 34.24 1.40
2925 3179 2.035066 GTGCAAACAGAGTCCAGCATTT 59.965 45.455 0.00 0.00 34.24 2.32
2926 3180 1.610522 GTGCAAACAGAGTCCAGCATT 59.389 47.619 0.00 0.00 34.24 3.56
2927 3181 1.242076 GTGCAAACAGAGTCCAGCAT 58.758 50.000 0.00 0.00 34.24 3.79
2928 3182 0.107263 TGTGCAAACAGAGTCCAGCA 60.107 50.000 0.00 0.00 0.00 4.41
2929 3183 1.002033 CTTGTGCAAACAGAGTCCAGC 60.002 52.381 0.00 0.00 0.00 4.85
2930 3184 1.605710 CCTTGTGCAAACAGAGTCCAG 59.394 52.381 0.00 0.00 0.00 3.86
2931 3185 1.064758 ACCTTGTGCAAACAGAGTCCA 60.065 47.619 0.00 0.00 0.00 4.02
2932 3186 1.334869 CACCTTGTGCAAACAGAGTCC 59.665 52.381 0.00 0.00 0.00 3.85
2933 3187 2.017049 ACACCTTGTGCAAACAGAGTC 58.983 47.619 0.00 0.00 36.98 3.36
2934 3188 2.128771 ACACCTTGTGCAAACAGAGT 57.871 45.000 0.00 0.00 36.98 3.24
2935 3189 2.942376 TGTACACCTTGTGCAAACAGAG 59.058 45.455 0.00 0.00 39.94 3.35
2936 3190 2.992593 TGTACACCTTGTGCAAACAGA 58.007 42.857 0.00 0.00 39.94 3.41
2937 3191 3.773860 TTGTACACCTTGTGCAAACAG 57.226 42.857 7.28 0.00 46.94 3.16
2942 3196 5.330455 TCAAAATTTGTACACCTTGTGCA 57.670 34.783 5.56 0.00 41.12 4.57
2943 3197 6.843069 AATCAAAATTTGTACACCTTGTGC 57.157 33.333 5.56 0.00 36.98 4.57
2944 3198 8.417780 TGAAATCAAAATTTGTACACCTTGTG 57.582 30.769 5.56 0.00 35.21 3.33
2945 3199 9.612066 ATTGAAATCAAAATTTGTACACCTTGT 57.388 25.926 5.56 0.00 39.55 3.16
2959 3213 9.001542 CCAGCTCCATTTTTATTGAAATCAAAA 57.998 29.630 0.00 0.00 39.55 2.44
2960 3214 7.607223 CCCAGCTCCATTTTTATTGAAATCAAA 59.393 33.333 0.00 0.00 39.55 2.69
2961 3215 7.104939 CCCAGCTCCATTTTTATTGAAATCAA 58.895 34.615 0.00 0.00 40.51 2.57
2962 3216 6.352051 CCCCAGCTCCATTTTTATTGAAATCA 60.352 38.462 0.00 0.00 0.00 2.57
2963 3217 6.051074 CCCCAGCTCCATTTTTATTGAAATC 58.949 40.000 0.00 0.00 0.00 2.17
2964 3218 5.629834 GCCCCAGCTCCATTTTTATTGAAAT 60.630 40.000 0.00 0.00 35.50 2.17
2965 3219 4.323409 GCCCCAGCTCCATTTTTATTGAAA 60.323 41.667 0.00 0.00 35.50 2.69
2966 3220 3.197549 GCCCCAGCTCCATTTTTATTGAA 59.802 43.478 0.00 0.00 35.50 2.69
2967 3221 2.765699 GCCCCAGCTCCATTTTTATTGA 59.234 45.455 0.00 0.00 35.50 2.57
2968 3222 2.500910 TGCCCCAGCTCCATTTTTATTG 59.499 45.455 0.00 0.00 40.80 1.90
2969 3223 2.831565 TGCCCCAGCTCCATTTTTATT 58.168 42.857 0.00 0.00 40.80 1.40
2970 3224 2.548464 TGCCCCAGCTCCATTTTTAT 57.452 45.000 0.00 0.00 40.80 1.40
2971 3225 2.548464 ATGCCCCAGCTCCATTTTTA 57.452 45.000 0.00 0.00 40.80 1.52
2972 3226 2.391678 CTATGCCCCAGCTCCATTTTT 58.608 47.619 0.00 0.00 40.80 1.94
2973 3227 1.412074 CCTATGCCCCAGCTCCATTTT 60.412 52.381 0.00 0.00 40.80 1.82
2974 3228 0.186873 CCTATGCCCCAGCTCCATTT 59.813 55.000 0.00 0.00 40.80 2.32
2975 3229 0.995675 ACCTATGCCCCAGCTCCATT 60.996 55.000 0.00 0.00 40.80 3.16
2976 3230 0.995675 AACCTATGCCCCAGCTCCAT 60.996 55.000 0.00 0.00 40.80 3.41
2977 3231 1.214305 AAACCTATGCCCCAGCTCCA 61.214 55.000 0.00 0.00 40.80 3.86
2978 3232 0.843984 TAAACCTATGCCCCAGCTCC 59.156 55.000 0.00 0.00 40.80 4.70
2979 3233 2.729028 TTAAACCTATGCCCCAGCTC 57.271 50.000 0.00 0.00 40.80 4.09
2980 3234 2.949447 CATTAAACCTATGCCCCAGCT 58.051 47.619 0.00 0.00 40.80 4.24
2981 3235 1.341209 GCATTAAACCTATGCCCCAGC 59.659 52.381 0.00 0.00 41.94 4.85
2982 3236 1.608590 CGCATTAAACCTATGCCCCAG 59.391 52.381 0.00 0.00 44.25 4.45
2989 3243 8.574251 TGATTTATATGGCGCATTAAACCTAT 57.426 30.769 10.83 0.00 0.00 2.57
3054 3308 5.486526 GGCCATAACATTTCCAAAATCACA 58.513 37.500 0.00 0.00 0.00 3.58
3089 3343 6.405286 CCAACCAGTTTACAAACACTGATTCA 60.405 38.462 7.53 0.00 42.74 2.57
3123 3380 7.530426 AACAGAGTCCAGCATTTAGAATTTT 57.470 32.000 0.00 0.00 0.00 1.82
3127 3384 4.216257 GCAAACAGAGTCCAGCATTTAGAA 59.784 41.667 0.00 0.00 0.00 2.10
3131 3388 2.035066 GTGCAAACAGAGTCCAGCATTT 59.965 45.455 0.00 0.00 34.24 2.32
3191 3448 0.450583 GCGCTTTAAACCTACTGCCC 59.549 55.000 0.00 0.00 0.00 5.36
3196 3453 4.395231 AGATTCTTGGCGCTTTAAACCTAC 59.605 41.667 7.64 0.00 0.00 3.18
3206 3463 5.979517 GCATTTTATTTAGATTCTTGGCGCT 59.020 36.000 7.64 0.00 0.00 5.92
3240 3497 0.464554 AAGCTCCTTCGGCCTATTGC 60.465 55.000 0.00 0.00 40.16 3.56
3261 3518 5.473162 CCAGTTTACAGTCAACATGGATTCA 59.527 40.000 0.00 0.00 30.22 2.57
3263 3520 5.385198 ACCAGTTTACAGTCAACATGGATT 58.615 37.500 16.68 1.15 31.81 3.01
3268 3525 4.532834 ACCAACCAGTTTACAGTCAACAT 58.467 39.130 0.50 0.00 0.00 2.71
3273 3530 6.628919 ACAATAACCAACCAGTTTACAGTC 57.371 37.500 0.00 0.00 0.00 3.51
3286 3543 9.995003 AGCATTCAGAATTTAAACAATAACCAA 57.005 25.926 0.00 0.00 0.00 3.67
3289 3546 9.638239 TCCAGCATTCAGAATTTAAACAATAAC 57.362 29.630 0.00 0.00 0.00 1.89
3399 3656 6.183359 GCCTATTGTTGTAAGTTCGCATTTTG 60.183 38.462 0.00 0.00 0.00 2.44
3502 3759 4.226168 AGAAACAGATAAAGGGTCCCTCAG 59.774 45.833 12.07 0.00 30.89 3.35
3509 3766 3.655777 TGGGACAGAAACAGATAAAGGGT 59.344 43.478 0.00 0.00 0.00 4.34
3510 3767 4.301072 TGGGACAGAAACAGATAAAGGG 57.699 45.455 0.00 0.00 0.00 3.95
3534 3791 2.034879 GTCATGCACCTGTGGACCG 61.035 63.158 0.00 0.00 32.58 4.79
3568 3825 1.553706 TTTCCAGACCGAGGGAGTAC 58.446 55.000 0.00 0.00 34.02 2.73
3569 3826 2.544844 ATTTCCAGACCGAGGGAGTA 57.455 50.000 0.00 0.00 34.02 2.59
3570 3827 2.108970 GTATTTCCAGACCGAGGGAGT 58.891 52.381 0.00 0.00 34.02 3.85
3571 3828 2.389715 AGTATTTCCAGACCGAGGGAG 58.610 52.381 0.00 0.00 34.02 4.30
3572 3829 2.500098 CAAGTATTTCCAGACCGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
3573 3830 2.236395 ACAAGTATTTCCAGACCGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3574 3831 3.522553 GACAAGTATTTCCAGACCGAGG 58.477 50.000 0.00 0.00 0.00 4.63
3575 3832 3.195825 AGGACAAGTATTTCCAGACCGAG 59.804 47.826 0.00 0.00 33.92 4.63
3576 3833 3.170717 AGGACAAGTATTTCCAGACCGA 58.829 45.455 0.00 0.00 33.92 4.69
3577 3834 3.056107 TGAGGACAAGTATTTCCAGACCG 60.056 47.826 0.00 0.00 33.92 4.79
3578 3835 4.553330 TGAGGACAAGTATTTCCAGACC 57.447 45.455 0.00 0.00 33.92 3.85
3579 3836 6.877611 TTTTGAGGACAAGTATTTCCAGAC 57.122 37.500 0.00 0.00 37.32 3.51
3580 3837 6.434028 CCATTTTGAGGACAAGTATTTCCAGA 59.566 38.462 0.00 0.00 37.32 3.86
3581 3838 6.209391 ACCATTTTGAGGACAAGTATTTCCAG 59.791 38.462 0.00 0.00 37.32 3.86
3582 3839 6.074648 ACCATTTTGAGGACAAGTATTTCCA 58.925 36.000 0.00 0.00 37.32 3.53
3583 3840 6.590234 ACCATTTTGAGGACAAGTATTTCC 57.410 37.500 0.00 0.00 37.32 3.13
3584 3841 7.433680 ACAACCATTTTGAGGACAAGTATTTC 58.566 34.615 0.00 0.00 37.32 2.17
3585 3842 7.360113 ACAACCATTTTGAGGACAAGTATTT 57.640 32.000 0.00 0.00 37.32 1.40
3586 3843 6.976934 ACAACCATTTTGAGGACAAGTATT 57.023 33.333 0.00 0.00 37.32 1.89
3587 3844 8.109634 AGATACAACCATTTTGAGGACAAGTAT 58.890 33.333 0.00 0.00 37.32 2.12
3588 3845 7.458397 AGATACAACCATTTTGAGGACAAGTA 58.542 34.615 0.00 0.00 37.32 2.24
3589 3846 6.306987 AGATACAACCATTTTGAGGACAAGT 58.693 36.000 0.00 0.00 37.32 3.16
3590 3847 6.824305 AGATACAACCATTTTGAGGACAAG 57.176 37.500 0.00 0.00 37.32 3.16
3591 3848 7.606456 GTCTAGATACAACCATTTTGAGGACAA 59.394 37.037 0.00 0.00 0.00 3.18
3592 3849 7.038302 AGTCTAGATACAACCATTTTGAGGACA 60.038 37.037 0.00 0.00 0.00 4.02
3593 3850 7.331791 AGTCTAGATACAACCATTTTGAGGAC 58.668 38.462 0.00 0.00 0.00 3.85
3594 3851 7.496346 AGTCTAGATACAACCATTTTGAGGA 57.504 36.000 0.00 0.00 0.00 3.71
3595 3852 9.838339 ATAAGTCTAGATACAACCATTTTGAGG 57.162 33.333 0.00 0.00 0.00 3.86
3635 3892 9.699410 TGTCCTAGAAATGAATAAAATGGATGT 57.301 29.630 0.00 0.00 0.00 3.06
3638 3895 9.753674 ACTTGTCCTAGAAATGAATAAAATGGA 57.246 29.630 0.00 0.00 0.00 3.41
3645 3902 9.542462 CGGAAATACTTGTCCTAGAAATGAATA 57.458 33.333 0.00 0.00 0.00 1.75
3646 3903 7.499232 CCGGAAATACTTGTCCTAGAAATGAAT 59.501 37.037 0.00 0.00 0.00 2.57
3647 3904 6.821665 CCGGAAATACTTGTCCTAGAAATGAA 59.178 38.462 0.00 0.00 0.00 2.57
3648 3905 6.155565 TCCGGAAATACTTGTCCTAGAAATGA 59.844 38.462 0.00 0.00 0.00 2.57
3649 3906 6.258068 GTCCGGAAATACTTGTCCTAGAAATG 59.742 42.308 5.23 0.00 0.00 2.32
3650 3907 6.070424 TGTCCGGAAATACTTGTCCTAGAAAT 60.070 38.462 5.23 0.00 0.00 2.17
3651 3908 5.246656 TGTCCGGAAATACTTGTCCTAGAAA 59.753 40.000 5.23 0.00 0.00 2.52
3652 3909 4.773674 TGTCCGGAAATACTTGTCCTAGAA 59.226 41.667 5.23 0.00 0.00 2.10
3653 3910 4.346730 TGTCCGGAAATACTTGTCCTAGA 58.653 43.478 5.23 0.00 0.00 2.43
3654 3911 4.401519 TCTGTCCGGAAATACTTGTCCTAG 59.598 45.833 5.23 0.00 0.00 3.02
3655 3912 4.346730 TCTGTCCGGAAATACTTGTCCTA 58.653 43.478 5.23 0.00 0.00 2.94
3656 3913 3.170717 TCTGTCCGGAAATACTTGTCCT 58.829 45.455 5.23 0.00 0.00 3.85
3657 3914 3.522553 CTCTGTCCGGAAATACTTGTCC 58.477 50.000 5.23 0.00 0.00 4.02
3658 3915 3.522553 CCTCTGTCCGGAAATACTTGTC 58.477 50.000 5.23 0.00 0.00 3.18
3659 3916 2.236395 CCCTCTGTCCGGAAATACTTGT 59.764 50.000 5.23 0.00 0.00 3.16
3660 3917 2.500098 TCCCTCTGTCCGGAAATACTTG 59.500 50.000 5.23 0.00 0.00 3.16
3661 3918 2.766828 CTCCCTCTGTCCGGAAATACTT 59.233 50.000 5.23 0.00 0.00 2.24
3662 3919 2.292323 ACTCCCTCTGTCCGGAAATACT 60.292 50.000 5.23 0.00 0.00 2.12
3663 3920 2.108970 ACTCCCTCTGTCCGGAAATAC 58.891 52.381 5.23 0.00 0.00 1.89
3664 3921 2.544844 ACTCCCTCTGTCCGGAAATA 57.455 50.000 5.23 0.00 0.00 1.40
3665 3922 2.544844 TACTCCCTCTGTCCGGAAAT 57.455 50.000 5.23 0.00 0.00 2.17
3666 3923 2.024273 AGATACTCCCTCTGTCCGGAAA 60.024 50.000 5.23 0.00 0.00 3.13
3667 3924 1.569548 AGATACTCCCTCTGTCCGGAA 59.430 52.381 5.23 0.00 0.00 4.30
3668 3925 1.133761 CAGATACTCCCTCTGTCCGGA 60.134 57.143 0.00 0.00 36.26 5.14
3669 3926 1.323412 CAGATACTCCCTCTGTCCGG 58.677 60.000 0.00 0.00 36.26 5.14
3670 3927 0.671251 GCAGATACTCCCTCTGTCCG 59.329 60.000 2.63 0.00 41.77 4.79
3671 3928 0.671251 CGCAGATACTCCCTCTGTCC 59.329 60.000 2.63 0.00 41.77 4.02
3672 3929 1.394618 ACGCAGATACTCCCTCTGTC 58.605 55.000 2.63 0.00 41.77 3.51
3673 3930 1.478510 CAACGCAGATACTCCCTCTGT 59.521 52.381 2.63 0.00 41.77 3.41
3674 3931 1.478510 ACAACGCAGATACTCCCTCTG 59.521 52.381 0.00 0.00 42.47 3.35
3675 3932 1.853963 ACAACGCAGATACTCCCTCT 58.146 50.000 0.00 0.00 0.00 3.69
3676 3933 2.166664 AGAACAACGCAGATACTCCCTC 59.833 50.000 0.00 0.00 0.00 4.30
3677 3934 2.180276 AGAACAACGCAGATACTCCCT 58.820 47.619 0.00 0.00 0.00 4.20
3678 3935 2.674796 AGAACAACGCAGATACTCCC 57.325 50.000 0.00 0.00 0.00 4.30
3679 3936 4.927425 TGTAAAGAACAACGCAGATACTCC 59.073 41.667 0.00 0.00 34.29 3.85
3680 3937 5.634020 AGTGTAAAGAACAACGCAGATACTC 59.366 40.000 0.00 0.00 40.63 2.59
3681 3938 5.539048 AGTGTAAAGAACAACGCAGATACT 58.461 37.500 0.00 0.00 40.63 2.12
3708 3965 1.159285 ACACACATCACTTGCATCCG 58.841 50.000 0.00 0.00 0.00 4.18
3833 4090 0.392461 ACGATAGCCCGCAAATGTGT 60.392 50.000 0.00 0.00 42.67 3.72
3860 4117 0.390860 GCCAGCGACTATGTGGAGAT 59.609 55.000 0.00 0.00 32.60 2.75
3944 4207 1.039856 ACCAGGTTGCAATGTGTTCC 58.960 50.000 0.59 0.00 0.00 3.62
3948 4211 1.812571 GAGGTACCAGGTTGCAATGTG 59.187 52.381 15.94 3.00 0.00 3.21
4215 4479 1.447317 GGCACCGATAACATGGCAGG 61.447 60.000 0.00 0.00 38.69 4.85
4245 4509 3.567797 GACATGCTTCGCCCTCGC 61.568 66.667 0.00 0.00 35.26 5.03
4263 4528 1.738030 GCAAGCCACATTGATCAAGGC 60.738 52.381 23.20 23.20 45.54 4.35
4374 4643 8.291191 ACTGTATTACTACTTACTGGAAGGAC 57.709 38.462 4.37 0.00 39.74 3.85
4386 4663 5.184479 TGCTGGAACGAACTGTATTACTACT 59.816 40.000 0.00 0.00 0.00 2.57
4387 4664 5.287992 GTGCTGGAACGAACTGTATTACTAC 59.712 44.000 0.00 0.00 0.00 2.73
4388 4665 5.404946 GTGCTGGAACGAACTGTATTACTA 58.595 41.667 0.00 0.00 0.00 1.82
4503 6037 1.192146 CCAGAGGTTCGACCAGGGAA 61.192 60.000 6.78 0.00 41.95 3.97
4543 6077 4.033684 GCATCTTCTTTGTGATCGCATTC 58.966 43.478 10.29 0.00 0.00 2.67
4567 6101 5.491070 AGACATGTGCATACTGTATGTGTT 58.509 37.500 24.32 11.40 38.43 3.32
4586 6132 3.780294 AGGGCATAAGGAACATGTAGACA 59.220 43.478 0.00 0.00 0.00 3.41
4587 6133 4.130118 CAGGGCATAAGGAACATGTAGAC 58.870 47.826 0.00 0.00 0.00 2.59
4621 6401 0.185901 AAAGCACCTTCCCTGAGCAA 59.814 50.000 0.00 0.00 0.00 3.91
4628 6408 7.836842 TGATTTATTTCTTAAAGCACCTTCCC 58.163 34.615 0.00 0.00 40.33 3.97
4666 6447 6.252967 TGTATAACAAAATGAGCACTGGTG 57.747 37.500 0.00 0.00 0.00 4.17
4684 6465 8.202137 GGTGCCTAATTAAGAGTCTGTTGTATA 58.798 37.037 0.00 0.00 0.00 1.47
4685 6466 7.048512 GGTGCCTAATTAAGAGTCTGTTGTAT 58.951 38.462 0.00 0.00 0.00 2.29
4686 6467 6.403878 GGTGCCTAATTAAGAGTCTGTTGTA 58.596 40.000 0.00 0.00 0.00 2.41
4687 6468 5.246307 GGTGCCTAATTAAGAGTCTGTTGT 58.754 41.667 0.00 0.00 0.00 3.32
4718 6503 5.353394 TTCTTAACCATCCGTGCTTATCT 57.647 39.130 0.00 0.00 0.00 1.98
4745 6530 8.473358 AGGTGCTTAGTAAAATAAACCAAGTT 57.527 30.769 0.00 0.00 0.00 2.66
4768 6581 6.154706 AGTTCTAACACATACTCCCTACAAGG 59.845 42.308 0.00 0.00 34.30 3.61
4796 6871 3.976169 TCTTTTGAACAGGAAAATGCGG 58.024 40.909 0.00 0.00 0.00 5.69
4839 6944 4.141801 CCATGTTACCGAAGATGAACCCTA 60.142 45.833 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.