Multiple sequence alignment - TraesCS1D01G224700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G224700 chr1D 100.000 6116 0 0 1 6116 313217276 313211161 0.000000e+00 11295.0
1 TraesCS1D01G224700 chr1D 89.773 88 9 0 2713 2800 372837111 372837024 5.010000e-21 113.0
2 TraesCS1D01G224700 chr1B 95.130 2854 68 27 470 3290 423593741 423590926 0.000000e+00 4434.0
3 TraesCS1D01G224700 chr1B 91.272 2853 141 45 3297 6116 423590756 423587979 0.000000e+00 3790.0
4 TraesCS1D01G224700 chr1B 96.099 282 11 0 191 472 423594162 423593881 1.550000e-125 460.0
5 TraesCS1D01G224700 chr1B 85.437 103 10 5 2697 2796 497472857 497472957 1.080000e-17 102.0
6 TraesCS1D01G224700 chr1A 88.908 2885 176 53 2788 5622 392784989 392782199 0.000000e+00 3422.0
7 TraesCS1D01G224700 chr1A 94.339 2261 77 19 496 2749 392787209 392784993 0.000000e+00 3419.0
8 TraesCS1D01G224700 chr1A 88.780 410 35 3 4 404 393454751 393454344 5.510000e-135 492.0
9 TraesCS1D01G224700 chr1A 89.583 192 17 1 5669 5860 392782193 392782005 2.200000e-59 241.0
10 TraesCS1D01G224700 chr1A 85.116 215 8 12 5908 6116 392782009 392781813 1.340000e-46 198.0
11 TraesCS1D01G224700 chr6D 83.593 1731 221 34 996 2699 16196719 16195025 0.000000e+00 1565.0
12 TraesCS1D01G224700 chr6A 82.747 1733 236 35 999 2714 16460734 16459048 0.000000e+00 1485.0
13 TraesCS1D01G224700 chr6B 82.087 1725 217 47 996 2687 28002497 28004162 0.000000e+00 1389.0
14 TraesCS1D01G224700 chr6B 85.286 1366 169 19 1373 2715 27944703 27943347 0.000000e+00 1380.0
15 TraesCS1D01G224700 chr6B 87.324 284 36 0 1702 1985 27996256 27996539 5.910000e-85 326.0
16 TraesCS1D01G224700 chr6B 82.709 347 39 10 1366 1695 27995840 27996182 7.760000e-74 289.0
17 TraesCS1D01G224700 chr6B 86.381 257 31 3 3565 3821 28005393 28005645 1.680000e-70 278.0
18 TraesCS1D01G224700 chr2B 81.072 1754 236 47 996 2715 46602134 46600443 0.000000e+00 1312.0
19 TraesCS1D01G224700 chr2B 89.447 199 21 0 3623 3821 46596230 46596032 1.020000e-62 252.0
20 TraesCS1D01G224700 chr4A 90.805 87 6 2 2712 2796 532402095 532402181 1.390000e-21 115.0
21 TraesCS1D01G224700 chr5A 89.773 88 5 3 2713 2797 569803205 569803291 6.480000e-20 110.0
22 TraesCS1D01G224700 chr2D 88.506 87 8 1 2713 2797 446052193 446052107 3.020000e-18 104.0
23 TraesCS1D01G224700 chr2D 88.506 87 8 2 2712 2796 547882290 547882376 3.020000e-18 104.0
24 TraesCS1D01G224700 chr2A 88.506 87 8 1 2713 2797 589003774 589003688 3.020000e-18 104.0
25 TraesCS1D01G224700 chr3A 86.598 97 7 5 2705 2797 624641936 624641842 1.080000e-17 102.0
26 TraesCS1D01G224700 chr4B 93.478 46 3 0 4415 4460 489668577 489668622 1.100000e-07 69.4
27 TraesCS1D01G224700 chr5D 100.000 29 0 0 4431 4459 541876894 541876866 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G224700 chr1D 313211161 313217276 6115 True 11295.000000 11295 100.0000 1 6116 1 chr1D.!!$R1 6115
1 TraesCS1D01G224700 chr1B 423587979 423594162 6183 True 2894.666667 4434 94.1670 191 6116 3 chr1B.!!$R1 5925
2 TraesCS1D01G224700 chr1A 392781813 392787209 5396 True 1820.000000 3422 89.4865 496 6116 4 chr1A.!!$R2 5620
3 TraesCS1D01G224700 chr6D 16195025 16196719 1694 True 1565.000000 1565 83.5930 996 2699 1 chr6D.!!$R1 1703
4 TraesCS1D01G224700 chr6A 16459048 16460734 1686 True 1485.000000 1485 82.7470 999 2714 1 chr6A.!!$R1 1715
5 TraesCS1D01G224700 chr6B 27943347 27944703 1356 True 1380.000000 1380 85.2860 1373 2715 1 chr6B.!!$R1 1342
6 TraesCS1D01G224700 chr6B 28002497 28005645 3148 False 833.500000 1389 84.2340 996 3821 2 chr6B.!!$F2 2825
7 TraesCS1D01G224700 chr6B 27995840 27996539 699 False 307.500000 326 85.0165 1366 1985 2 chr6B.!!$F1 619
8 TraesCS1D01G224700 chr2B 46600443 46602134 1691 True 1312.000000 1312 81.0720 996 2715 1 chr2B.!!$R2 1719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
97 98 0.037734 GGGACGATGGTGGAGGTTTT 59.962 55.0 0.00 0.00 0.00 2.43 F
120 121 0.102300 GGTTGGCGCTTGTCACTTTT 59.898 50.0 7.64 0.00 0.00 2.27 F
305 306 0.175989 GAGGTGAAAGGGCTACTCCG 59.824 60.0 0.00 0.00 34.94 4.63 F
1546 1726 0.236449 GTTCGACGAAATTTGGGCGT 59.764 50.0 24.94 14.68 38.62 5.68 F
2462 2769 1.291132 GCGGCACTAGTGAGGAATTC 58.709 55.0 27.08 6.46 0.00 2.17 F
4299 5264 0.468226 TCCTCTTGAGTGCAAACCGT 59.532 50.0 0.00 0.00 32.73 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1789 2083 0.975887 TGAGTACACTGGCAGCATCA 59.024 50.000 15.89 8.86 0.00 3.07 R
2408 2715 7.118723 TCTTAGATGGTGGTAAATTTGCATCT 58.881 34.615 8.59 9.60 33.44 2.90 R
2462 2769 1.066002 CATAGCAATTCCCTTGTGCCG 59.934 52.381 0.00 0.00 39.13 5.69 R
2837 3165 1.100510 AGCGGCTCTACACATACGAA 58.899 50.000 0.00 0.00 0.00 3.85 R
4627 5597 0.044855 AATCCTGGAGGGCTACACCT 59.955 55.000 1.52 0.00 45.57 4.00 R
5713 6729 0.040204 CTGCAAGGGTGAAGGGGATT 59.960 55.000 0.00 0.00 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.291132 GGTCGATGCTCACTAAAGGC 58.709 55.000 0.00 0.00 0.00 4.35
20 21 1.405526 GGTCGATGCTCACTAAAGGCA 60.406 52.381 0.00 0.00 40.32 4.75
22 23 2.939103 GTCGATGCTCACTAAAGGCATT 59.061 45.455 0.00 0.00 45.14 3.56
23 24 2.938451 TCGATGCTCACTAAAGGCATTG 59.062 45.455 7.76 7.76 45.14 2.82
24 25 2.540361 CGATGCTCACTAAAGGCATTGC 60.540 50.000 0.00 0.00 45.14 3.56
25 26 1.908344 TGCTCACTAAAGGCATTGCA 58.092 45.000 11.39 0.00 0.00 4.08
26 27 1.814394 TGCTCACTAAAGGCATTGCAG 59.186 47.619 11.39 1.47 0.00 4.41
27 28 1.133790 GCTCACTAAAGGCATTGCAGG 59.866 52.381 11.39 0.00 0.00 4.85
28 29 2.440409 CTCACTAAAGGCATTGCAGGT 58.560 47.619 11.39 0.00 0.00 4.00
29 30 2.161855 TCACTAAAGGCATTGCAGGTG 58.838 47.619 11.39 10.69 0.00 4.00
30 31 1.888512 CACTAAAGGCATTGCAGGTGT 59.111 47.619 11.39 0.00 0.00 4.16
31 32 3.081061 CACTAAAGGCATTGCAGGTGTA 58.919 45.455 11.39 0.00 0.00 2.90
32 33 3.505680 CACTAAAGGCATTGCAGGTGTAA 59.494 43.478 11.39 0.00 0.00 2.41
33 34 4.022416 CACTAAAGGCATTGCAGGTGTAAA 60.022 41.667 11.39 0.00 0.00 2.01
34 35 4.772100 ACTAAAGGCATTGCAGGTGTAAAT 59.228 37.500 11.39 0.00 0.00 1.40
35 36 5.949354 ACTAAAGGCATTGCAGGTGTAAATA 59.051 36.000 11.39 0.00 0.00 1.40
36 37 5.937975 AAAGGCATTGCAGGTGTAAATAT 57.062 34.783 11.39 0.00 0.00 1.28
37 38 4.924305 AGGCATTGCAGGTGTAAATATG 57.076 40.909 11.39 0.00 0.00 1.78
38 39 4.280819 AGGCATTGCAGGTGTAAATATGT 58.719 39.130 11.39 0.00 0.00 2.29
39 40 4.711355 AGGCATTGCAGGTGTAAATATGTT 59.289 37.500 11.39 0.00 0.00 2.71
40 41 4.805192 GGCATTGCAGGTGTAAATATGTTG 59.195 41.667 11.39 0.00 0.00 3.33
41 42 5.394005 GGCATTGCAGGTGTAAATATGTTGA 60.394 40.000 11.39 0.00 0.00 3.18
42 43 6.098679 GCATTGCAGGTGTAAATATGTTGAA 58.901 36.000 3.15 0.00 0.00 2.69
43 44 6.589523 GCATTGCAGGTGTAAATATGTTGAAA 59.410 34.615 3.15 0.00 0.00 2.69
44 45 7.201461 GCATTGCAGGTGTAAATATGTTGAAAG 60.201 37.037 3.15 0.00 0.00 2.62
45 46 7.517614 TTGCAGGTGTAAATATGTTGAAAGA 57.482 32.000 0.00 0.00 0.00 2.52
46 47 6.908825 TGCAGGTGTAAATATGTTGAAAGAC 58.091 36.000 0.00 0.00 0.00 3.01
47 48 6.488344 TGCAGGTGTAAATATGTTGAAAGACA 59.512 34.615 0.00 0.00 0.00 3.41
48 49 7.013750 TGCAGGTGTAAATATGTTGAAAGACAA 59.986 33.333 0.00 0.00 36.02 3.18
49 50 8.028938 GCAGGTGTAAATATGTTGAAAGACAAT 58.971 33.333 0.00 0.00 40.76 2.71
50 51 9.345517 CAGGTGTAAATATGTTGAAAGACAATG 57.654 33.333 0.00 0.00 40.76 2.82
51 52 9.295825 AGGTGTAAATATGTTGAAAGACAATGA 57.704 29.630 0.00 0.00 40.76 2.57
61 62 8.213518 TGTTGAAAGACAATGATTATAGAGGC 57.786 34.615 0.00 0.00 40.76 4.70
62 63 7.828717 TGTTGAAAGACAATGATTATAGAGGCA 59.171 33.333 0.00 0.00 40.76 4.75
63 64 8.341173 GTTGAAAGACAATGATTATAGAGGCAG 58.659 37.037 0.00 0.00 40.76 4.85
64 65 7.795047 TGAAAGACAATGATTATAGAGGCAGA 58.205 34.615 0.00 0.00 0.00 4.26
65 66 7.930325 TGAAAGACAATGATTATAGAGGCAGAG 59.070 37.037 0.00 0.00 0.00 3.35
66 67 6.357579 AGACAATGATTATAGAGGCAGAGG 57.642 41.667 0.00 0.00 0.00 3.69
67 68 6.080682 AGACAATGATTATAGAGGCAGAGGA 58.919 40.000 0.00 0.00 0.00 3.71
68 69 6.211184 AGACAATGATTATAGAGGCAGAGGAG 59.789 42.308 0.00 0.00 0.00 3.69
69 70 5.177326 CAATGATTATAGAGGCAGAGGAGC 58.823 45.833 0.00 0.00 0.00 4.70
70 71 3.849527 TGATTATAGAGGCAGAGGAGCA 58.150 45.455 0.00 0.00 35.83 4.26
71 72 4.226384 TGATTATAGAGGCAGAGGAGCAA 58.774 43.478 0.00 0.00 35.83 3.91
72 73 4.842948 TGATTATAGAGGCAGAGGAGCAAT 59.157 41.667 0.00 0.00 35.83 3.56
73 74 4.613925 TTATAGAGGCAGAGGAGCAATG 57.386 45.455 0.00 0.00 35.83 2.82
74 75 0.467384 TAGAGGCAGAGGAGCAATGC 59.533 55.000 0.00 0.00 39.25 3.56
75 76 1.224039 GAGGCAGAGGAGCAATGCT 59.776 57.895 7.79 7.79 43.88 3.79
76 77 0.394080 GAGGCAGAGGAGCAATGCTT 60.394 55.000 9.91 0.00 39.88 3.91
77 78 0.394080 AGGCAGAGGAGCAATGCTTC 60.394 55.000 9.91 7.49 39.88 3.86
78 79 1.712977 GGCAGAGGAGCAATGCTTCG 61.713 60.000 9.91 0.00 39.54 3.79
79 80 1.712977 GCAGAGGAGCAATGCTTCGG 61.713 60.000 9.91 5.94 39.54 4.30
80 81 1.094073 CAGAGGAGCAATGCTTCGGG 61.094 60.000 9.91 0.00 39.54 5.14
81 82 1.221840 GAGGAGCAATGCTTCGGGA 59.778 57.895 9.91 0.00 39.54 5.14
82 83 1.078143 AGGAGCAATGCTTCGGGAC 60.078 57.895 9.91 0.00 39.54 4.46
95 96 3.400188 GGGACGATGGTGGAGGTT 58.600 61.111 0.00 0.00 0.00 3.50
96 97 1.683441 GGGACGATGGTGGAGGTTT 59.317 57.895 0.00 0.00 0.00 3.27
97 98 0.037734 GGGACGATGGTGGAGGTTTT 59.962 55.000 0.00 0.00 0.00 2.43
98 99 1.546998 GGGACGATGGTGGAGGTTTTT 60.547 52.381 0.00 0.00 0.00 1.94
99 100 1.810755 GGACGATGGTGGAGGTTTTTC 59.189 52.381 0.00 0.00 0.00 2.29
100 101 2.552373 GGACGATGGTGGAGGTTTTTCT 60.552 50.000 0.00 0.00 0.00 2.52
101 102 2.484264 GACGATGGTGGAGGTTTTTCTG 59.516 50.000 0.00 0.00 0.00 3.02
102 103 1.812571 CGATGGTGGAGGTTTTTCTGG 59.187 52.381 0.00 0.00 0.00 3.86
103 104 2.814097 CGATGGTGGAGGTTTTTCTGGT 60.814 50.000 0.00 0.00 0.00 4.00
104 105 2.838637 TGGTGGAGGTTTTTCTGGTT 57.161 45.000 0.00 0.00 0.00 3.67
105 106 2.383855 TGGTGGAGGTTTTTCTGGTTG 58.616 47.619 0.00 0.00 0.00 3.77
106 107 1.686587 GGTGGAGGTTTTTCTGGTTGG 59.313 52.381 0.00 0.00 0.00 3.77
107 108 1.068588 GTGGAGGTTTTTCTGGTTGGC 59.931 52.381 0.00 0.00 0.00 4.52
108 109 0.313987 GGAGGTTTTTCTGGTTGGCG 59.686 55.000 0.00 0.00 0.00 5.69
109 110 0.318699 GAGGTTTTTCTGGTTGGCGC 60.319 55.000 0.00 0.00 0.00 6.53
110 111 0.755327 AGGTTTTTCTGGTTGGCGCT 60.755 50.000 7.64 0.00 0.00 5.92
111 112 0.104120 GGTTTTTCTGGTTGGCGCTT 59.896 50.000 7.64 0.00 0.00 4.68
112 113 1.208259 GTTTTTCTGGTTGGCGCTTG 58.792 50.000 7.64 0.00 0.00 4.01
113 114 0.820871 TTTTTCTGGTTGGCGCTTGT 59.179 45.000 7.64 0.00 0.00 3.16
114 115 0.383949 TTTTCTGGTTGGCGCTTGTC 59.616 50.000 7.64 0.00 0.00 3.18
115 116 0.749818 TTTCTGGTTGGCGCTTGTCA 60.750 50.000 7.64 0.35 0.00 3.58
116 117 1.444119 TTCTGGTTGGCGCTTGTCAC 61.444 55.000 7.64 0.00 0.00 3.67
117 118 1.893808 CTGGTTGGCGCTTGTCACT 60.894 57.895 7.64 0.00 0.00 3.41
118 119 1.447317 CTGGTTGGCGCTTGTCACTT 61.447 55.000 7.64 0.00 0.00 3.16
119 120 1.034838 TGGTTGGCGCTTGTCACTTT 61.035 50.000 7.64 0.00 0.00 2.66
120 121 0.102300 GGTTGGCGCTTGTCACTTTT 59.898 50.000 7.64 0.00 0.00 2.27
121 122 1.470805 GGTTGGCGCTTGTCACTTTTT 60.471 47.619 7.64 0.00 0.00 1.94
136 137 3.192799 TTTTTGCCTCCACCAACGA 57.807 47.368 0.00 0.00 0.00 3.85
137 138 1.698506 TTTTTGCCTCCACCAACGAT 58.301 45.000 0.00 0.00 0.00 3.73
138 139 1.243902 TTTTGCCTCCACCAACGATC 58.756 50.000 0.00 0.00 0.00 3.69
139 140 0.608035 TTTGCCTCCACCAACGATCC 60.608 55.000 0.00 0.00 0.00 3.36
140 141 2.124695 GCCTCCACCAACGATCCC 60.125 66.667 0.00 0.00 0.00 3.85
141 142 2.186903 CCTCCACCAACGATCCCG 59.813 66.667 0.00 0.00 42.50 5.14
142 143 2.186903 CTCCACCAACGATCCCGG 59.813 66.667 0.00 0.00 40.78 5.73
143 144 3.385749 CTCCACCAACGATCCCGGG 62.386 68.421 16.85 16.85 40.78 5.73
144 145 3.712907 CCACCAACGATCCCGGGT 61.713 66.667 22.86 8.01 40.78 5.28
145 146 2.349755 CACCAACGATCCCGGGTT 59.650 61.111 22.86 13.38 40.78 4.11
146 147 1.597989 CACCAACGATCCCGGGTTA 59.402 57.895 22.86 1.03 40.78 2.85
147 148 0.461339 CACCAACGATCCCGGGTTAG 60.461 60.000 22.86 15.63 40.78 2.34
148 149 1.523032 CCAACGATCCCGGGTTAGC 60.523 63.158 22.86 3.30 40.78 3.09
149 150 1.520666 CAACGATCCCGGGTTAGCT 59.479 57.895 22.86 0.13 40.78 3.32
150 151 0.810031 CAACGATCCCGGGTTAGCTG 60.810 60.000 22.86 10.59 40.78 4.24
151 152 0.974010 AACGATCCCGGGTTAGCTGA 60.974 55.000 22.86 0.00 40.78 4.26
152 153 0.974010 ACGATCCCGGGTTAGCTGAA 60.974 55.000 22.86 0.00 40.78 3.02
153 154 0.177141 CGATCCCGGGTTAGCTGAAA 59.823 55.000 22.86 0.00 0.00 2.69
154 155 1.202651 CGATCCCGGGTTAGCTGAAAT 60.203 52.381 22.86 2.10 0.00 2.17
155 156 2.495084 GATCCCGGGTTAGCTGAAATC 58.505 52.381 22.86 8.92 0.00 2.17
156 157 1.281419 TCCCGGGTTAGCTGAAATCA 58.719 50.000 22.86 0.00 0.00 2.57
157 158 1.843851 TCCCGGGTTAGCTGAAATCAT 59.156 47.619 22.86 0.00 0.00 2.45
158 159 1.949525 CCCGGGTTAGCTGAAATCATG 59.050 52.381 14.18 0.00 0.00 3.07
159 160 1.949525 CCGGGTTAGCTGAAATCATGG 59.050 52.381 0.00 0.00 0.00 3.66
160 161 1.334869 CGGGTTAGCTGAAATCATGGC 59.665 52.381 0.00 0.00 0.00 4.40
161 162 1.334869 GGGTTAGCTGAAATCATGGCG 59.665 52.381 0.00 0.00 0.00 5.69
162 163 2.017049 GGTTAGCTGAAATCATGGCGT 58.983 47.619 0.00 0.00 0.00 5.68
163 164 2.223340 GGTTAGCTGAAATCATGGCGTG 60.223 50.000 0.00 0.00 0.00 5.34
164 165 1.016627 TAGCTGAAATCATGGCGTGC 58.983 50.000 0.65 0.00 0.00 5.34
165 166 0.679002 AGCTGAAATCATGGCGTGCT 60.679 50.000 0.65 0.00 0.00 4.40
166 167 1.016627 GCTGAAATCATGGCGTGCTA 58.983 50.000 0.65 0.00 0.00 3.49
167 168 1.605710 GCTGAAATCATGGCGTGCTAT 59.394 47.619 0.65 0.00 0.00 2.97
168 169 2.033801 GCTGAAATCATGGCGTGCTATT 59.966 45.455 0.65 0.00 0.00 1.73
169 170 3.851105 GCTGAAATCATGGCGTGCTATTC 60.851 47.826 0.65 6.88 0.00 1.75
170 171 3.544684 TGAAATCATGGCGTGCTATTCT 58.455 40.909 0.65 0.00 0.00 2.40
171 172 3.947196 TGAAATCATGGCGTGCTATTCTT 59.053 39.130 0.65 0.00 0.00 2.52
172 173 4.398988 TGAAATCATGGCGTGCTATTCTTT 59.601 37.500 0.65 0.00 0.00 2.52
173 174 4.989279 AATCATGGCGTGCTATTCTTTT 57.011 36.364 0.65 0.00 0.00 2.27
174 175 6.094742 TGAAATCATGGCGTGCTATTCTTTTA 59.905 34.615 0.65 0.00 0.00 1.52
175 176 5.679734 ATCATGGCGTGCTATTCTTTTAG 57.320 39.130 0.65 0.00 0.00 1.85
176 177 3.312421 TCATGGCGTGCTATTCTTTTAGC 59.688 43.478 0.65 0.00 43.98 3.09
177 178 2.985896 TGGCGTGCTATTCTTTTAGCT 58.014 42.857 5.21 0.00 44.03 3.32
178 179 4.131649 TGGCGTGCTATTCTTTTAGCTA 57.868 40.909 5.21 0.00 44.03 3.32
179 180 4.509616 TGGCGTGCTATTCTTTTAGCTAA 58.490 39.130 0.86 0.86 44.03 3.09
180 181 4.570772 TGGCGTGCTATTCTTTTAGCTAAG 59.429 41.667 6.24 0.00 44.03 2.18
181 182 4.024809 GGCGTGCTATTCTTTTAGCTAAGG 60.025 45.833 6.24 4.43 44.03 2.69
182 183 4.809426 GCGTGCTATTCTTTTAGCTAAGGA 59.191 41.667 6.24 6.70 44.03 3.36
183 184 5.050702 GCGTGCTATTCTTTTAGCTAAGGAG 60.051 44.000 6.24 9.09 44.03 3.69
184 185 6.043411 CGTGCTATTCTTTTAGCTAAGGAGT 58.957 40.000 6.24 8.58 44.03 3.85
185 186 6.535508 CGTGCTATTCTTTTAGCTAAGGAGTT 59.464 38.462 6.24 4.88 44.03 3.01
186 187 7.064728 CGTGCTATTCTTTTAGCTAAGGAGTTT 59.935 37.037 6.24 4.60 44.03 2.66
187 188 8.178313 GTGCTATTCTTTTAGCTAAGGAGTTTG 58.822 37.037 6.24 4.97 44.03 2.93
188 189 7.336931 TGCTATTCTTTTAGCTAAGGAGTTTGG 59.663 37.037 6.24 5.13 44.03 3.28
189 190 7.201741 GCTATTCTTTTAGCTAAGGAGTTTGGG 60.202 40.741 6.24 3.17 41.15 4.12
303 304 2.567615 TGAAGAGGTGAAAGGGCTACTC 59.432 50.000 0.00 0.00 0.00 2.59
305 306 0.175989 GAGGTGAAAGGGCTACTCCG 59.824 60.000 0.00 0.00 34.94 4.63
335 336 2.100197 GGGGTTTAGAGTCATTTGGGC 58.900 52.381 0.00 0.00 0.00 5.36
347 348 2.515996 ATTTGGGCGTGTCGATCGGT 62.516 55.000 16.41 0.00 0.00 4.69
355 356 2.346244 GCGTGTCGATCGGTGAATAAAA 59.654 45.455 16.41 0.00 0.00 1.52
363 364 7.094975 TGTCGATCGGTGAATAAAATTTTGACT 60.095 33.333 16.41 0.00 0.00 3.41
424 425 7.338710 TGTAAAAATTGATTTGGGGTTTCACA 58.661 30.769 0.00 0.00 0.00 3.58
462 463 1.166531 GGTGGCATCGGATTGTAGGC 61.167 60.000 0.00 0.00 0.00 3.93
494 637 6.603940 AATAAAGCTGCAACAATTTCCCTA 57.396 33.333 1.02 0.00 0.00 3.53
522 665 2.170187 AGGCTGCAACAAATTTCCAACA 59.830 40.909 0.50 0.00 0.00 3.33
625 775 4.802051 CCCGTCCCGAGTCCCGTA 62.802 72.222 0.00 0.00 36.31 4.02
626 776 2.517875 CCGTCCCGAGTCCCGTAT 60.518 66.667 0.00 0.00 36.31 3.06
627 777 2.123428 CCGTCCCGAGTCCCGTATT 61.123 63.158 0.00 0.00 36.31 1.89
628 778 1.065273 CGTCCCGAGTCCCGTATTG 59.935 63.158 0.00 0.00 36.31 1.90
629 779 1.227176 GTCCCGAGTCCCGTATTGC 60.227 63.158 0.00 0.00 36.31 3.56
672 822 2.039724 CCCCTAGGTCCCCTTCCC 60.040 72.222 8.29 0.00 34.61 3.97
673 823 2.039724 CCCTAGGTCCCCTTCCCC 60.040 72.222 8.29 0.00 34.61 4.81
674 824 2.039724 CCTAGGTCCCCTTCCCCC 60.040 72.222 0.00 0.00 34.61 5.40
850 1011 4.767255 GTGCCCGACCCAGCTGAG 62.767 72.222 17.39 3.79 0.00 3.35
959 1120 5.647589 TCTTATAGCTAACACCGACAACAG 58.352 41.667 0.00 0.00 0.00 3.16
1010 1171 1.208052 CACTTCTCCCATGGATGACGT 59.792 52.381 15.22 11.39 0.00 4.34
1200 1364 1.525442 GGACCCCGACGATTTCCAT 59.475 57.895 0.00 0.00 0.00 3.41
1210 1374 1.721487 GATTTCCATGTCACCGGCG 59.279 57.895 0.00 0.00 0.00 6.46
1512 1692 1.910580 CTATCTGGGTGCGGTGGGTT 61.911 60.000 0.00 0.00 0.00 4.11
1546 1726 0.236449 GTTCGACGAAATTTGGGCGT 59.764 50.000 24.94 14.68 38.62 5.68
1653 1870 2.787994 ACCATTGAAAGACCAGAGCAG 58.212 47.619 0.00 0.00 0.00 4.24
1789 2083 3.603532 TCTTTCTGCGCTCATTGAGAAT 58.396 40.909 17.87 0.00 0.00 2.40
2462 2769 1.291132 GCGGCACTAGTGAGGAATTC 58.709 55.000 27.08 6.46 0.00 2.17
2615 2929 8.643324 GTCTCATCCTTATACTGTCCATTAGTT 58.357 37.037 0.00 0.00 0.00 2.24
2780 3099 9.959749 TTGAACTAAAACCATGACACTTATTTC 57.040 29.630 0.00 0.00 0.00 2.17
2913 3246 5.827756 AGGTAGGATATGTACGGATCATCA 58.172 41.667 8.57 0.00 0.00 3.07
3019 3363 8.872134 TGGGGAGAAATAATACGTTGATGTATA 58.128 33.333 0.00 0.00 34.01 1.47
3093 3440 5.305585 TGGATCTGAACTTCCACACTTAAC 58.694 41.667 0.00 0.00 37.10 2.01
3117 3464 4.260170 AGAGAGCTCCTTAATGCTTGTTG 58.740 43.478 10.93 0.00 39.91 3.33
3205 3884 3.928992 ACAGACAATGCACGAGTATCTTG 59.071 43.478 0.00 0.00 37.44 3.02
3222 3901 4.890158 TCTTGCAGTGAGAAATACTGGA 57.110 40.909 7.19 1.52 44.36 3.86
3320 4167 4.234574 TGTAGAGCAACTCATTACGTGTG 58.765 43.478 0.00 0.00 32.06 3.82
3404 4251 9.969001 AGTAACTTCCCTTTAGCATTGTAATAA 57.031 29.630 0.00 0.00 0.00 1.40
3530 4493 7.864686 TCTCATAAGTTGTTCACAAATCACAG 58.135 34.615 0.00 0.00 37.63 3.66
3610 4573 6.331369 AGTTGTGACTGGACCAAATATTTG 57.669 37.500 19.40 19.40 33.99 2.32
3708 4671 5.083122 TGCAAAGATATTGTTTTCCCTGGA 58.917 37.500 0.00 0.00 0.00 3.86
3739 4702 6.459066 TGTTCAGTTGAAGAGGATCACTTAG 58.541 40.000 0.00 0.00 37.82 2.18
3860 4823 7.057264 AGCTGTAGTGTGTCTCTCTATGATTA 58.943 38.462 0.00 0.00 0.00 1.75
3940 4903 7.029563 CACTGTAATCTTATTTTGTCTTGGCC 58.970 38.462 0.00 0.00 0.00 5.36
3952 4916 4.650972 TGTCTTGGCCCTACTTTAATGT 57.349 40.909 0.00 0.00 0.00 2.71
3958 4922 5.005628 TGGCCCTACTTTAATGTTTTCCT 57.994 39.130 0.00 0.00 0.00 3.36
3997 4961 9.290483 GATTAGTTTGCTTTGAAGTTATTAGCC 57.710 33.333 0.00 0.00 0.00 3.93
4059 5023 1.776662 TAGGTGCTCGCCTAGACATT 58.223 50.000 5.16 0.00 39.94 2.71
4099 5063 1.003118 TCAAACGAGTAGCCTTGGCAT 59.997 47.619 14.54 0.00 0.00 4.40
4164 5129 1.074951 CCTTTTCTGGCGGGGAAGT 59.925 57.895 0.00 0.00 0.00 3.01
4275 5240 7.624360 TCAACTTCAAATTTATACGGATGCT 57.376 32.000 0.00 0.00 0.00 3.79
4298 5263 1.532868 CTTCCTCTTGAGTGCAAACCG 59.467 52.381 0.00 0.00 32.73 4.44
4299 5264 0.468226 TCCTCTTGAGTGCAAACCGT 59.532 50.000 0.00 0.00 32.73 4.83
4300 5265 1.134220 TCCTCTTGAGTGCAAACCGTT 60.134 47.619 0.00 0.00 32.73 4.44
4316 5281 3.758425 ACCGTTATTAACAGCAGGGTTT 58.242 40.909 7.31 0.00 32.29 3.27
4363 5331 8.937634 AAACAAAATCAGCATGGAAATATCTC 57.062 30.769 0.00 0.00 36.16 2.75
4372 5340 4.041444 GCATGGAAATATCTCACTCCCTCT 59.959 45.833 0.00 0.00 0.00 3.69
4387 5355 8.972662 TCACTCCCTCTGATCCATATTAATTA 57.027 34.615 0.00 0.00 0.00 1.40
4409 5377 8.970691 ATTATTGCAGCTTTAGTACAACTTTG 57.029 30.769 0.00 0.00 0.00 2.77
4410 5378 5.828299 TTGCAGCTTTAGTACAACTTTGT 57.172 34.783 0.00 0.00 44.86 2.83
4411 5379 6.928979 TTGCAGCTTTAGTACAACTTTGTA 57.071 33.333 0.00 0.00 42.35 2.41
4452 5420 5.896432 CGTACTAAAGCTGCGACAATTAATG 59.104 40.000 0.00 0.00 0.00 1.90
4505 5473 7.730364 AATCGAACACAAATAGTCTGAAAGT 57.270 32.000 0.00 0.00 33.76 2.66
4638 5608 9.179104 ACCTAAAATTAATATAGGTGTAGCCCT 57.821 33.333 22.79 5.19 45.87 5.19
4639 5609 9.668497 CCTAAAATTAATATAGGTGTAGCCCTC 57.332 37.037 14.82 0.00 38.26 4.30
4640 5610 9.668497 CTAAAATTAATATAGGTGTAGCCCTCC 57.332 37.037 0.00 0.00 38.26 4.30
4653 5624 1.140312 GCCCTCCAGGATTATCCACA 58.860 55.000 14.30 0.00 39.61 4.17
4739 5710 1.457346 AAAGCTCGCATGGAGGAAAG 58.543 50.000 11.63 0.00 43.36 2.62
4808 5779 1.136695 TGTTGGTGCAAGGAGCTTTTG 59.863 47.619 7.36 7.36 45.94 2.44
4823 5794 4.014406 AGCTTTTGTGCATCATCATCAGA 58.986 39.130 0.00 0.00 34.99 3.27
5040 6011 3.751175 TGCATACCAGTGTGCTAAAACTC 59.249 43.478 18.46 0.00 46.07 3.01
5085 6056 2.695666 AGAGCGAATAGGCAGAAGCTTA 59.304 45.455 0.00 0.00 41.70 3.09
5258 6259 3.762288 TGTGGCGAGTCAGTATAAGAAGT 59.238 43.478 0.00 0.00 0.00 3.01
5300 6301 8.671921 TCTTTTGACAATCAATAGAGCTCATTC 58.328 33.333 17.77 2.14 38.76 2.67
5304 6305 8.828688 TGACAATCAATAGAGCTCATTCTATG 57.171 34.615 17.77 8.90 39.66 2.23
5352 6353 4.008933 AGCACCACGCCAGTCTCC 62.009 66.667 0.00 0.00 44.04 3.71
5376 6377 4.187694 GTCAGGGAAATTTTGCACACAAA 58.812 39.130 2.98 0.00 43.97 2.83
5379 6380 3.565063 AGGGAAATTTTGCACACAAATGC 59.435 39.130 2.98 0.00 44.96 3.56
5404 6405 5.853282 GCACACAACATTAGCTTCTTTACAG 59.147 40.000 0.00 0.00 0.00 2.74
5434 6445 5.541484 AGAAGACTTAAAACCCCGTCTAAGA 59.459 40.000 0.00 0.00 35.82 2.10
5464 6475 6.331572 TGATTTCCTGTAGAAGCCCCATAATA 59.668 38.462 0.00 0.00 35.40 0.98
5471 6482 5.843969 TGTAGAAGCCCCATAATATCAGACA 59.156 40.000 0.00 0.00 0.00 3.41
5530 6541 0.817013 CCAGGTTACGCCAAATGCAT 59.183 50.000 0.00 0.00 41.33 3.96
5538 6549 2.649190 ACGCCAAATGCATACACCATA 58.351 42.857 0.00 0.00 41.33 2.74
5547 6558 2.102420 TGCATACACCATAACGGAGGAG 59.898 50.000 0.00 0.00 38.63 3.69
5554 6565 2.374170 ACCATAACGGAGGAGGTGTTTT 59.626 45.455 0.00 0.00 38.63 2.43
5567 6578 1.338020 GGTGTTTTCAGCTGTCAAGGG 59.662 52.381 14.67 0.00 43.96 3.95
5569 6580 2.887152 GTGTTTTCAGCTGTCAAGGGAT 59.113 45.455 14.67 0.00 0.00 3.85
5573 6584 3.507162 TTCAGCTGTCAAGGGATTCAA 57.493 42.857 14.67 0.00 0.00 2.69
5577 6588 1.197721 GCTGTCAAGGGATTCAACACG 59.802 52.381 0.00 0.00 0.00 4.49
5579 6590 2.878406 CTGTCAAGGGATTCAACACGTT 59.122 45.455 0.00 0.00 0.00 3.99
5613 6624 1.605710 GCAGCTGCAAGAAAGAACTCA 59.394 47.619 33.36 0.00 41.59 3.41
5635 6647 0.253894 ACCTGTACCCGGGCAATAAC 59.746 55.000 24.08 11.94 41.25 1.89
5649 6661 4.947388 GGGCAATAACAATTCCAGTAGTCA 59.053 41.667 0.00 0.00 0.00 3.41
5650 6662 5.594317 GGGCAATAACAATTCCAGTAGTCAT 59.406 40.000 0.00 0.00 0.00 3.06
5657 6669 5.595885 ACAATTCCAGTAGTCATCTGATCG 58.404 41.667 0.00 0.00 35.20 3.69
5705 6721 6.150474 CGACATTAACCTTGATAAAACCAGGT 59.850 38.462 0.00 0.00 0.00 4.00
5709 6725 4.895668 ACCTTGATAAAACCAGGTCGTA 57.104 40.909 0.00 0.00 0.00 3.43
5713 6729 5.878116 CCTTGATAAAACCAGGTCGTAATGA 59.122 40.000 0.00 0.00 0.00 2.57
5714 6730 6.373216 CCTTGATAAAACCAGGTCGTAATGAA 59.627 38.462 0.00 0.00 0.00 2.57
5751 6767 3.124976 GCAGAAAGTGTTTTTGCAAAGCA 59.875 39.130 12.41 12.48 36.47 3.91
5797 6813 1.748950 TTGAGTTTGCTGCAGTGTCA 58.251 45.000 16.64 8.37 0.00 3.58
5831 6847 1.741706 CCAACTGCGCTTTCTCATCAT 59.258 47.619 9.73 0.00 0.00 2.45
5834 6850 2.555199 ACTGCGCTTTCTCATCATACC 58.445 47.619 9.73 0.00 0.00 2.73
5844 6860 1.794701 CTCATCATACCGCAACCGATG 59.205 52.381 0.00 0.00 36.29 3.84
5867 6883 4.179298 AGCCGATCTTACCGAGTAAAAAC 58.821 43.478 0.00 0.00 0.00 2.43
5878 6894 6.165700 ACCGAGTAAAAACCTAACTTCTCA 57.834 37.500 0.00 0.00 0.00 3.27
5912 6928 5.232414 GCACTAAGATCCTCATGTAAACGAC 59.768 44.000 0.00 0.00 0.00 4.34
6009 7030 1.076632 CCCTCTCTAGGTGGAGCGT 60.077 63.158 0.00 0.00 41.89 5.07
6041 7062 4.432741 GCTCTCCCAACCCCCAGC 62.433 72.222 0.00 0.00 0.00 4.85
6043 7064 4.649705 TCTCCCAACCCCCAGCGA 62.650 66.667 0.00 0.00 0.00 4.93
6080 7102 3.273434 TGCTGCTAAGATTTGTGCCTAG 58.727 45.455 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.010145 TGCCTTTAGTGAGCATCGAC 57.990 50.000 0.00 0.00 38.61 4.20
2 3 2.938451 CAATGCCTTTAGTGAGCATCGA 59.062 45.455 0.00 0.00 46.17 3.59
3 4 2.540361 GCAATGCCTTTAGTGAGCATCG 60.540 50.000 0.00 0.00 46.17 3.84
4 5 2.424601 TGCAATGCCTTTAGTGAGCATC 59.575 45.455 1.53 0.00 46.17 3.91
6 7 1.814394 CTGCAATGCCTTTAGTGAGCA 59.186 47.619 1.53 0.00 41.50 4.26
7 8 1.133790 CCTGCAATGCCTTTAGTGAGC 59.866 52.381 1.53 0.00 0.00 4.26
8 9 2.163010 CACCTGCAATGCCTTTAGTGAG 59.837 50.000 1.53 0.00 0.00 3.51
9 10 2.161855 CACCTGCAATGCCTTTAGTGA 58.838 47.619 1.53 0.00 0.00 3.41
10 11 1.888512 ACACCTGCAATGCCTTTAGTG 59.111 47.619 1.53 5.77 0.00 2.74
11 12 2.292828 ACACCTGCAATGCCTTTAGT 57.707 45.000 1.53 0.00 0.00 2.24
12 13 4.782019 TTTACACCTGCAATGCCTTTAG 57.218 40.909 1.53 0.00 0.00 1.85
13 14 6.379703 ACATATTTACACCTGCAATGCCTTTA 59.620 34.615 1.53 0.00 0.00 1.85
14 15 5.187576 ACATATTTACACCTGCAATGCCTTT 59.812 36.000 1.53 0.00 0.00 3.11
15 16 4.711355 ACATATTTACACCTGCAATGCCTT 59.289 37.500 1.53 0.00 0.00 4.35
16 17 4.280819 ACATATTTACACCTGCAATGCCT 58.719 39.130 1.53 0.00 0.00 4.75
17 18 4.654091 ACATATTTACACCTGCAATGCC 57.346 40.909 1.53 0.00 0.00 4.40
18 19 5.649557 TCAACATATTTACACCTGCAATGC 58.350 37.500 0.00 0.00 0.00 3.56
19 20 8.028354 TCTTTCAACATATTTACACCTGCAATG 58.972 33.333 0.00 0.00 0.00 2.82
20 21 8.028938 GTCTTTCAACATATTTACACCTGCAAT 58.971 33.333 0.00 0.00 0.00 3.56
21 22 7.013750 TGTCTTTCAACATATTTACACCTGCAA 59.986 33.333 0.00 0.00 0.00 4.08
22 23 6.488344 TGTCTTTCAACATATTTACACCTGCA 59.512 34.615 0.00 0.00 0.00 4.41
23 24 6.908825 TGTCTTTCAACATATTTACACCTGC 58.091 36.000 0.00 0.00 0.00 4.85
24 25 9.345517 CATTGTCTTTCAACATATTTACACCTG 57.654 33.333 0.00 0.00 38.97 4.00
25 26 9.295825 TCATTGTCTTTCAACATATTTACACCT 57.704 29.630 0.00 0.00 38.97 4.00
35 36 8.844244 GCCTCTATAATCATTGTCTTTCAACAT 58.156 33.333 0.00 0.00 38.97 2.71
36 37 7.828717 TGCCTCTATAATCATTGTCTTTCAACA 59.171 33.333 0.00 0.00 38.97 3.33
37 38 8.213518 TGCCTCTATAATCATTGTCTTTCAAC 57.786 34.615 0.00 0.00 38.97 3.18
38 39 8.267183 TCTGCCTCTATAATCATTGTCTTTCAA 58.733 33.333 0.00 0.00 40.53 2.69
39 40 7.795047 TCTGCCTCTATAATCATTGTCTTTCA 58.205 34.615 0.00 0.00 0.00 2.69
40 41 7.387397 CCTCTGCCTCTATAATCATTGTCTTTC 59.613 40.741 0.00 0.00 0.00 2.62
41 42 7.071698 TCCTCTGCCTCTATAATCATTGTCTTT 59.928 37.037 0.00 0.00 0.00 2.52
42 43 6.556495 TCCTCTGCCTCTATAATCATTGTCTT 59.444 38.462 0.00 0.00 0.00 3.01
43 44 6.080682 TCCTCTGCCTCTATAATCATTGTCT 58.919 40.000 0.00 0.00 0.00 3.41
44 45 6.352016 TCCTCTGCCTCTATAATCATTGTC 57.648 41.667 0.00 0.00 0.00 3.18
45 46 5.279910 GCTCCTCTGCCTCTATAATCATTGT 60.280 44.000 0.00 0.00 0.00 2.71
46 47 5.177326 GCTCCTCTGCCTCTATAATCATTG 58.823 45.833 0.00 0.00 0.00 2.82
47 48 4.842948 TGCTCCTCTGCCTCTATAATCATT 59.157 41.667 0.00 0.00 0.00 2.57
48 49 4.423913 TGCTCCTCTGCCTCTATAATCAT 58.576 43.478 0.00 0.00 0.00 2.45
49 50 3.849527 TGCTCCTCTGCCTCTATAATCA 58.150 45.455 0.00 0.00 0.00 2.57
50 51 4.881019 TTGCTCCTCTGCCTCTATAATC 57.119 45.455 0.00 0.00 0.00 1.75
51 52 4.565236 GCATTGCTCCTCTGCCTCTATAAT 60.565 45.833 0.16 0.00 0.00 1.28
52 53 3.244353 GCATTGCTCCTCTGCCTCTATAA 60.244 47.826 0.16 0.00 0.00 0.98
53 54 2.301296 GCATTGCTCCTCTGCCTCTATA 59.699 50.000 0.16 0.00 0.00 1.31
54 55 1.072015 GCATTGCTCCTCTGCCTCTAT 59.928 52.381 0.16 0.00 0.00 1.98
55 56 0.467384 GCATTGCTCCTCTGCCTCTA 59.533 55.000 0.16 0.00 0.00 2.43
56 57 1.224039 GCATTGCTCCTCTGCCTCT 59.776 57.895 0.16 0.00 0.00 3.69
57 58 0.394080 AAGCATTGCTCCTCTGCCTC 60.394 55.000 12.39 0.00 38.25 4.70
58 59 0.394080 GAAGCATTGCTCCTCTGCCT 60.394 55.000 12.39 0.00 38.25 4.75
59 60 1.712977 CGAAGCATTGCTCCTCTGCC 61.713 60.000 12.39 0.00 38.25 4.85
60 61 1.712977 CCGAAGCATTGCTCCTCTGC 61.713 60.000 12.39 0.00 38.25 4.26
61 62 1.094073 CCCGAAGCATTGCTCCTCTG 61.094 60.000 12.39 3.36 38.25 3.35
62 63 1.222936 CCCGAAGCATTGCTCCTCT 59.777 57.895 12.39 0.00 38.25 3.69
63 64 1.092345 GTCCCGAAGCATTGCTCCTC 61.092 60.000 12.39 5.95 38.25 3.71
64 65 1.078143 GTCCCGAAGCATTGCTCCT 60.078 57.895 12.39 0.00 38.25 3.69
65 66 2.464459 CGTCCCGAAGCATTGCTCC 61.464 63.158 12.39 0.00 38.25 4.70
66 67 0.811616 ATCGTCCCGAAGCATTGCTC 60.812 55.000 12.39 4.94 38.25 4.26
67 68 1.091771 CATCGTCCCGAAGCATTGCT 61.092 55.000 5.03 5.03 42.56 3.91
68 69 1.353103 CATCGTCCCGAAGCATTGC 59.647 57.895 0.00 0.00 39.99 3.56
69 70 0.744414 ACCATCGTCCCGAAGCATTG 60.744 55.000 0.00 0.00 39.99 2.82
70 71 0.744414 CACCATCGTCCCGAAGCATT 60.744 55.000 0.00 0.00 39.99 3.56
71 72 1.153369 CACCATCGTCCCGAAGCAT 60.153 57.895 0.00 0.00 39.99 3.79
72 73 2.264480 CACCATCGTCCCGAAGCA 59.736 61.111 0.00 0.00 39.99 3.91
73 74 2.511600 CCACCATCGTCCCGAAGC 60.512 66.667 0.00 0.00 39.99 3.86
74 75 1.141881 CTCCACCATCGTCCCGAAG 59.858 63.158 0.00 0.00 39.99 3.79
75 76 2.355986 CCTCCACCATCGTCCCGAA 61.356 63.158 0.00 0.00 39.99 4.30
76 77 2.758327 CCTCCACCATCGTCCCGA 60.758 66.667 0.00 0.00 41.13 5.14
77 78 2.180159 AAACCTCCACCATCGTCCCG 62.180 60.000 0.00 0.00 0.00 5.14
78 79 0.037734 AAAACCTCCACCATCGTCCC 59.962 55.000 0.00 0.00 0.00 4.46
79 80 1.810755 GAAAAACCTCCACCATCGTCC 59.189 52.381 0.00 0.00 0.00 4.79
80 81 2.484264 CAGAAAAACCTCCACCATCGTC 59.516 50.000 0.00 0.00 0.00 4.20
81 82 2.504367 CAGAAAAACCTCCACCATCGT 58.496 47.619 0.00 0.00 0.00 3.73
82 83 1.812571 CCAGAAAAACCTCCACCATCG 59.187 52.381 0.00 0.00 0.00 3.84
83 84 2.876581 ACCAGAAAAACCTCCACCATC 58.123 47.619 0.00 0.00 0.00 3.51
84 85 2.965147 CAACCAGAAAAACCTCCACCAT 59.035 45.455 0.00 0.00 0.00 3.55
85 86 2.383855 CAACCAGAAAAACCTCCACCA 58.616 47.619 0.00 0.00 0.00 4.17
86 87 1.686587 CCAACCAGAAAAACCTCCACC 59.313 52.381 0.00 0.00 0.00 4.61
87 88 1.068588 GCCAACCAGAAAAACCTCCAC 59.931 52.381 0.00 0.00 0.00 4.02
88 89 1.408969 GCCAACCAGAAAAACCTCCA 58.591 50.000 0.00 0.00 0.00 3.86
89 90 0.313987 CGCCAACCAGAAAAACCTCC 59.686 55.000 0.00 0.00 0.00 4.30
90 91 0.318699 GCGCCAACCAGAAAAACCTC 60.319 55.000 0.00 0.00 0.00 3.85
91 92 0.755327 AGCGCCAACCAGAAAAACCT 60.755 50.000 2.29 0.00 0.00 3.50
92 93 0.104120 AAGCGCCAACCAGAAAAACC 59.896 50.000 2.29 0.00 0.00 3.27
93 94 1.208259 CAAGCGCCAACCAGAAAAAC 58.792 50.000 2.29 0.00 0.00 2.43
94 95 0.820871 ACAAGCGCCAACCAGAAAAA 59.179 45.000 2.29 0.00 0.00 1.94
95 96 0.383949 GACAAGCGCCAACCAGAAAA 59.616 50.000 2.29 0.00 0.00 2.29
96 97 0.749818 TGACAAGCGCCAACCAGAAA 60.750 50.000 2.29 0.00 0.00 2.52
97 98 1.153066 TGACAAGCGCCAACCAGAA 60.153 52.632 2.29 0.00 0.00 3.02
98 99 1.891919 GTGACAAGCGCCAACCAGA 60.892 57.895 2.29 0.00 0.00 3.86
99 100 1.447317 AAGTGACAAGCGCCAACCAG 61.447 55.000 2.29 0.00 0.00 4.00
100 101 1.034838 AAAGTGACAAGCGCCAACCA 61.035 50.000 2.29 0.00 0.00 3.67
101 102 0.102300 AAAAGTGACAAGCGCCAACC 59.898 50.000 2.29 0.00 0.00 3.77
102 103 1.921243 AAAAAGTGACAAGCGCCAAC 58.079 45.000 2.29 0.00 0.00 3.77
118 119 1.611491 GATCGTTGGTGGAGGCAAAAA 59.389 47.619 0.00 0.00 0.00 1.94
119 120 1.243902 GATCGTTGGTGGAGGCAAAA 58.756 50.000 0.00 0.00 0.00 2.44
120 121 0.608035 GGATCGTTGGTGGAGGCAAA 60.608 55.000 0.00 0.00 0.00 3.68
121 122 1.002624 GGATCGTTGGTGGAGGCAA 60.003 57.895 0.00 0.00 0.00 4.52
122 123 2.668632 GGATCGTTGGTGGAGGCA 59.331 61.111 0.00 0.00 0.00 4.75
123 124 2.124695 GGGATCGTTGGTGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
124 125 2.186903 CGGGATCGTTGGTGGAGG 59.813 66.667 0.00 0.00 0.00 4.30
125 126 2.186903 CCGGGATCGTTGGTGGAG 59.813 66.667 0.00 0.00 33.95 3.86
126 127 3.395702 CCCGGGATCGTTGGTGGA 61.396 66.667 18.48 0.00 33.95 4.02
127 128 1.901654 TAACCCGGGATCGTTGGTGG 61.902 60.000 32.02 0.00 32.63 4.61
128 129 0.461339 CTAACCCGGGATCGTTGGTG 60.461 60.000 32.02 2.18 32.63 4.17
129 130 1.902556 CTAACCCGGGATCGTTGGT 59.097 57.895 32.02 0.00 33.45 3.67
130 131 1.523032 GCTAACCCGGGATCGTTGG 60.523 63.158 32.02 14.41 33.95 3.77
131 132 0.810031 CAGCTAACCCGGGATCGTTG 60.810 60.000 32.02 16.66 33.95 4.10
132 133 0.974010 TCAGCTAACCCGGGATCGTT 60.974 55.000 32.02 14.13 33.95 3.85
133 134 0.974010 TTCAGCTAACCCGGGATCGT 60.974 55.000 32.02 11.88 33.95 3.73
134 135 0.177141 TTTCAGCTAACCCGGGATCG 59.823 55.000 32.02 13.74 0.00 3.69
135 136 2.158813 TGATTTCAGCTAACCCGGGATC 60.159 50.000 32.02 16.71 0.00 3.36
136 137 1.843851 TGATTTCAGCTAACCCGGGAT 59.156 47.619 32.02 20.40 0.00 3.85
137 138 1.281419 TGATTTCAGCTAACCCGGGA 58.719 50.000 32.02 4.01 0.00 5.14
138 139 1.949525 CATGATTTCAGCTAACCCGGG 59.050 52.381 22.25 22.25 0.00 5.73
139 140 1.949525 CCATGATTTCAGCTAACCCGG 59.050 52.381 0.00 0.00 0.00 5.73
140 141 1.334869 GCCATGATTTCAGCTAACCCG 59.665 52.381 0.00 0.00 0.00 5.28
141 142 1.334869 CGCCATGATTTCAGCTAACCC 59.665 52.381 0.00 0.00 0.00 4.11
142 143 2.017049 ACGCCATGATTTCAGCTAACC 58.983 47.619 0.00 0.00 0.00 2.85
143 144 2.792542 GCACGCCATGATTTCAGCTAAC 60.793 50.000 0.00 0.00 0.00 2.34
144 145 1.401552 GCACGCCATGATTTCAGCTAA 59.598 47.619 0.00 0.00 0.00 3.09
145 146 1.016627 GCACGCCATGATTTCAGCTA 58.983 50.000 0.00 0.00 0.00 3.32
146 147 0.679002 AGCACGCCATGATTTCAGCT 60.679 50.000 0.00 0.00 0.00 4.24
147 148 1.016627 TAGCACGCCATGATTTCAGC 58.983 50.000 0.00 0.00 0.00 4.26
148 149 3.562973 AGAATAGCACGCCATGATTTCAG 59.437 43.478 0.00 0.00 0.00 3.02
149 150 3.544684 AGAATAGCACGCCATGATTTCA 58.455 40.909 0.00 0.00 0.00 2.69
150 151 4.558538 AAGAATAGCACGCCATGATTTC 57.441 40.909 0.00 0.00 0.00 2.17
151 152 4.989279 AAAGAATAGCACGCCATGATTT 57.011 36.364 0.00 0.00 0.00 2.17
152 153 4.989279 AAAAGAATAGCACGCCATGATT 57.011 36.364 0.00 0.00 0.00 2.57
153 154 4.023707 GCTAAAAGAATAGCACGCCATGAT 60.024 41.667 0.00 0.00 46.06 2.45
154 155 3.312421 GCTAAAAGAATAGCACGCCATGA 59.688 43.478 0.00 0.00 46.06 3.07
155 156 3.621794 GCTAAAAGAATAGCACGCCATG 58.378 45.455 1.64 0.00 46.06 3.66
156 157 3.971032 GCTAAAAGAATAGCACGCCAT 57.029 42.857 1.64 0.00 46.06 4.40
163 164 7.201741 CCCAAACTCCTTAGCTAAAAGAATAGC 60.202 40.741 17.97 0.00 46.94 2.97
164 165 7.283354 CCCCAAACTCCTTAGCTAAAAGAATAG 59.717 40.741 17.97 8.08 0.00 1.73
165 166 7.116736 CCCCAAACTCCTTAGCTAAAAGAATA 58.883 38.462 17.97 0.00 0.00 1.75
166 167 5.952347 CCCCAAACTCCTTAGCTAAAAGAAT 59.048 40.000 17.97 2.73 0.00 2.40
167 168 5.163023 ACCCCAAACTCCTTAGCTAAAAGAA 60.163 40.000 17.97 0.00 0.00 2.52
168 169 4.352893 ACCCCAAACTCCTTAGCTAAAAGA 59.647 41.667 17.97 12.21 0.00 2.52
169 170 4.663334 ACCCCAAACTCCTTAGCTAAAAG 58.337 43.478 7.74 10.30 0.00 2.27
170 171 4.734843 ACCCCAAACTCCTTAGCTAAAA 57.265 40.909 7.74 0.00 0.00 1.52
171 172 4.598373 TGTACCCCAAACTCCTTAGCTAAA 59.402 41.667 7.74 0.00 0.00 1.85
172 173 4.169666 TGTACCCCAAACTCCTTAGCTAA 58.830 43.478 5.94 5.94 0.00 3.09
173 174 3.793712 TGTACCCCAAACTCCTTAGCTA 58.206 45.455 0.00 0.00 0.00 3.32
174 175 2.627933 TGTACCCCAAACTCCTTAGCT 58.372 47.619 0.00 0.00 0.00 3.32
175 176 3.646736 ATGTACCCCAAACTCCTTAGC 57.353 47.619 0.00 0.00 0.00 3.09
176 177 7.416326 GCAATTTATGTACCCCAAACTCCTTAG 60.416 40.741 0.00 0.00 0.00 2.18
177 178 6.378848 GCAATTTATGTACCCCAAACTCCTTA 59.621 38.462 0.00 0.00 0.00 2.69
178 179 5.186992 GCAATTTATGTACCCCAAACTCCTT 59.813 40.000 0.00 0.00 0.00 3.36
179 180 4.709886 GCAATTTATGTACCCCAAACTCCT 59.290 41.667 0.00 0.00 0.00 3.69
180 181 4.709886 AGCAATTTATGTACCCCAAACTCC 59.290 41.667 0.00 0.00 0.00 3.85
181 182 5.914898 AGCAATTTATGTACCCCAAACTC 57.085 39.130 0.00 0.00 0.00 3.01
182 183 6.377146 CAGTAGCAATTTATGTACCCCAAACT 59.623 38.462 0.00 0.00 0.00 2.66
183 184 6.405397 CCAGTAGCAATTTATGTACCCCAAAC 60.405 42.308 0.00 0.00 0.00 2.93
184 185 5.654650 CCAGTAGCAATTTATGTACCCCAAA 59.345 40.000 0.00 0.00 0.00 3.28
185 186 5.044772 TCCAGTAGCAATTTATGTACCCCAA 60.045 40.000 0.00 0.00 0.00 4.12
186 187 4.475381 TCCAGTAGCAATTTATGTACCCCA 59.525 41.667 0.00 0.00 0.00 4.96
187 188 5.043737 TCCAGTAGCAATTTATGTACCCC 57.956 43.478 0.00 0.00 0.00 4.95
188 189 6.206829 GGATTCCAGTAGCAATTTATGTACCC 59.793 42.308 0.00 0.00 0.00 3.69
189 190 6.073222 CGGATTCCAGTAGCAATTTATGTACC 60.073 42.308 3.09 0.00 0.00 3.34
303 304 3.215975 TCTAAACCCCACAAAAGTTCGG 58.784 45.455 0.00 0.00 0.00 4.30
305 306 4.885325 TGACTCTAAACCCCACAAAAGTTC 59.115 41.667 0.00 0.00 0.00 3.01
335 336 4.772046 ATTTTATTCACCGATCGACACG 57.228 40.909 18.66 1.54 0.00 4.49
372 373 8.127150 AGCTTATTTCTGCAACCTTTTCTATT 57.873 30.769 0.00 0.00 0.00 1.73
424 425 2.290323 ACCTCCTCGCTAACAAAAGCAT 60.290 45.455 0.00 0.00 42.91 3.79
462 463 6.926280 TGTTGCAGCTTTATTAAATTGTCG 57.074 33.333 1.17 0.00 0.00 4.35
501 644 2.170187 TGTTGGAAATTTGTTGCAGCCT 59.830 40.909 0.00 0.00 0.00 4.58
502 645 2.559440 TGTTGGAAATTTGTTGCAGCC 58.441 42.857 0.00 0.00 0.00 4.85
503 646 4.612932 TTTGTTGGAAATTTGTTGCAGC 57.387 36.364 0.00 0.00 0.00 5.25
533 676 2.095969 TGCACACGTGAATTCGGATTTC 60.096 45.455 25.01 5.83 34.94 2.17
534 677 1.876799 TGCACACGTGAATTCGGATTT 59.123 42.857 25.01 0.00 34.94 2.17
543 686 3.081804 TCTATCTCTCTGCACACGTGAA 58.918 45.455 25.01 6.36 0.00 3.18
628 778 1.153369 TGAGACTGCGGCAATAGGC 60.153 57.895 3.44 0.00 43.74 3.93
629 779 1.156645 GCTGAGACTGCGGCAATAGG 61.157 60.000 3.44 0.00 39.93 2.57
673 823 4.208686 GACGCGTAGGGAGCAGGG 62.209 72.222 13.97 0.00 46.37 4.45
674 824 4.208686 GGACGCGTAGGGAGCAGG 62.209 72.222 13.97 0.00 46.37 4.85
675 825 4.208686 GGGACGCGTAGGGAGCAG 62.209 72.222 13.97 0.00 46.37 4.24
676 826 3.348554 TAGGGACGCGTAGGGAGCA 62.349 63.158 13.97 0.00 46.37 4.26
677 827 2.517875 TAGGGACGCGTAGGGAGC 60.518 66.667 13.97 0.00 46.37 4.70
678 828 1.153005 ACTAGGGACGCGTAGGGAG 60.153 63.158 13.97 10.53 46.37 4.30
679 829 1.153086 GACTAGGGACGCGTAGGGA 60.153 63.158 13.97 0.00 46.37 4.20
689 839 2.044555 CGAGTGCCGTGACTAGGGA 61.045 63.158 0.00 0.00 33.64 4.20
933 1094 6.127563 TGTTGTCGGTGTTAGCTATAAGATGA 60.128 38.462 0.00 0.00 0.00 2.92
1098 1262 2.182537 GCGTCGTCGGGGTTGTAT 59.817 61.111 3.90 0.00 37.56 2.29
1210 1374 1.450312 CTCGGTGGAAGGACATGGC 60.450 63.158 0.00 0.00 0.00 4.40
1546 1726 2.659016 CTCTGCGAGCACCTTCCA 59.341 61.111 0.00 0.00 0.00 3.53
1789 2083 0.975887 TGAGTACACTGGCAGCATCA 59.024 50.000 15.89 8.86 0.00 3.07
2408 2715 7.118723 TCTTAGATGGTGGTAAATTTGCATCT 58.881 34.615 8.59 9.60 33.44 2.90
2462 2769 1.066002 CATAGCAATTCCCTTGTGCCG 59.934 52.381 0.00 0.00 39.13 5.69
2565 2877 3.251972 TGACATGCGTACATTGCAAGAAA 59.748 39.130 4.94 0.00 46.87 2.52
2615 2929 9.220906 ACATAGGAGGTAAGTATTGGATAAACA 57.779 33.333 0.00 0.00 0.00 2.83
2773 3092 9.765795 ATAATACTCCCTCTGTTTCGAAATAAG 57.234 33.333 14.69 14.44 0.00 1.73
2779 3098 4.960469 ACCATAATACTCCCTCTGTTTCGA 59.040 41.667 0.00 0.00 0.00 3.71
2780 3099 5.277857 ACCATAATACTCCCTCTGTTTCG 57.722 43.478 0.00 0.00 0.00 3.46
2837 3165 1.100510 AGCGGCTCTACACATACGAA 58.899 50.000 0.00 0.00 0.00 3.85
3019 3363 2.387757 ACAAAGCCACAAACTCCATGT 58.612 42.857 0.00 0.00 0.00 3.21
3093 3440 5.275067 ACAAGCATTAAGGAGCTCTCTAG 57.725 43.478 14.64 0.57 40.90 2.43
3222 3901 5.513233 ACAATCCAGAGGTAATGCAGAAAT 58.487 37.500 0.00 0.00 0.00 2.17
3256 3936 6.223852 TCTCTGTGTAAGGAAACATGAGAAC 58.776 40.000 0.00 0.00 38.10 3.01
3561 4524 3.057033 GCCAGACAAGAATGCATTCAGTT 60.057 43.478 34.59 21.56 39.23 3.16
3610 4573 7.668525 ACTTAGTCAATTTTGTACCACTAGC 57.331 36.000 0.00 0.00 0.00 3.42
3708 4671 4.828939 TCCTCTTCAACTGAACATGCAATT 59.171 37.500 0.00 0.00 0.00 2.32
3860 4823 7.949565 AGTACTCCATGATAGAGACAATCAGAT 59.050 37.037 4.68 0.00 36.82 2.90
3873 4836 9.249053 GGATAAGATGAGAAGTACTCCATGATA 57.751 37.037 0.00 0.00 44.34 2.15
3940 4903 9.040939 CCACAAAAAGGAAAACATTAAAGTAGG 57.959 33.333 0.00 0.00 0.00 3.18
3952 4916 2.472029 TCCAGCCCACAAAAAGGAAAA 58.528 42.857 0.00 0.00 0.00 2.29
3958 4922 4.742138 GCAAACTAATCCAGCCCACAAAAA 60.742 41.667 0.00 0.00 0.00 1.94
3997 4961 6.199154 CCTTGTTTACACTAGATGCTGATACG 59.801 42.308 0.00 0.00 0.00 3.06
4044 5008 3.800261 GCTTATGAATGTCTAGGCGAGCA 60.800 47.826 0.00 0.00 0.00 4.26
4056 5020 3.120546 CCGTCGCCTATTGCTTATGAATG 60.121 47.826 0.00 0.00 38.05 2.67
4057 5021 3.067106 CCGTCGCCTATTGCTTATGAAT 58.933 45.455 0.00 0.00 38.05 2.57
4059 5023 1.411246 ACCGTCGCCTATTGCTTATGA 59.589 47.619 0.00 0.00 38.05 2.15
4099 5063 0.467384 CCAACCATTGCCACCAACAA 59.533 50.000 0.00 0.00 32.95 2.83
4110 5075 2.883888 GCCATCTACACCACCAACCATT 60.884 50.000 0.00 0.00 0.00 3.16
4164 5129 0.691078 GCTCCCTCCCTGGTATGTCA 60.691 60.000 0.00 0.00 0.00 3.58
4275 5240 0.473755 TTGCACTCAAGAGGAAGGCA 59.526 50.000 1.73 3.44 0.00 4.75
4299 5264 9.349713 CCATAGATAAAACCCTGCTGTTAATAA 57.650 33.333 0.00 0.00 0.00 1.40
4300 5265 8.719596 TCCATAGATAAAACCCTGCTGTTAATA 58.280 33.333 0.00 0.00 0.00 0.98
4387 5355 6.391227 ACAAAGTTGTACTAAAGCTGCAAT 57.609 33.333 1.02 0.00 40.16 3.56
4390 5358 7.415229 AGTTTACAAAGTTGTACTAAAGCTGC 58.585 34.615 3.38 0.00 42.84 5.25
4428 5396 3.991605 AATTGTCGCAGCTTTAGTACG 57.008 42.857 0.00 0.00 0.00 3.67
4452 5420 7.778470 AAATCATTTACTCTCTTCGATCCAC 57.222 36.000 0.00 0.00 0.00 4.02
4578 5548 3.429492 TGTGCTGCAAATGAAATAGGGA 58.571 40.909 2.77 0.00 0.00 4.20
4627 5597 0.044855 AATCCTGGAGGGCTACACCT 59.955 55.000 1.52 0.00 45.57 4.00
4636 5606 1.762957 ACGTGTGGATAATCCTGGAGG 59.237 52.381 1.52 0.00 37.46 4.30
4638 5608 2.747177 AGACGTGTGGATAATCCTGGA 58.253 47.619 0.00 0.00 37.46 3.86
4639 5609 3.543680 AAGACGTGTGGATAATCCTGG 57.456 47.619 0.00 0.00 37.46 4.45
4640 5610 4.094887 CCAAAAGACGTGTGGATAATCCTG 59.905 45.833 0.00 0.00 37.46 3.86
4653 5624 1.818674 GCAATCATCCCCAAAAGACGT 59.181 47.619 0.00 0.00 0.00 4.34
4739 5710 1.375523 ACTCCATTCGTGGTTCGCC 60.376 57.895 0.00 0.00 39.67 5.54
4776 5747 2.229792 GCACCAACAGAAGTTCCATCA 58.770 47.619 0.00 0.00 35.28 3.07
4823 5794 4.487714 TCCGACTTAATCCTTTGCATCT 57.512 40.909 0.00 0.00 0.00 2.90
4926 5897 3.998341 TGCAAACAAGACTACCGGTTATC 59.002 43.478 15.04 11.42 0.00 1.75
5040 6011 0.967887 TCCAGGCAAGTCTCCTCTCG 60.968 60.000 0.00 0.00 0.00 4.04
5085 6056 1.684248 GGTGGATTCTGCAAGGCATCT 60.684 52.381 0.00 0.00 38.13 2.90
5281 6282 6.654161 GCCATAGAATGAGCTCTATTGATTGT 59.346 38.462 16.19 6.92 36.66 2.71
5300 6301 6.810676 CAGCTTACTACATGTATGAGCCATAG 59.189 42.308 21.79 7.88 36.27 2.23
5304 6305 3.743396 GCAGCTTACTACATGTATGAGCC 59.257 47.826 21.79 11.00 36.27 4.70
5352 6353 1.339610 TGTGCAAAATTTCCCTGACCG 59.660 47.619 0.00 0.00 0.00 4.79
5376 6377 1.167851 AGCTAATGTTGTGTGCGCAT 58.832 45.000 15.91 0.00 0.00 4.73
5379 6380 3.542712 AAGAAGCTAATGTTGTGTGCG 57.457 42.857 0.00 0.00 0.00 5.34
5404 6405 7.389884 AGACGGGGTTTTAAGTCTTCTTTTATC 59.610 37.037 0.00 0.00 40.64 1.75
5434 6445 4.385754 GGGCTTCTACAGGAAATCAAGGAT 60.386 45.833 0.00 0.00 33.07 3.24
5464 6475 1.731433 GGCCGCAATGCATGTCTGAT 61.731 55.000 5.91 0.00 0.00 2.90
5471 6482 1.067516 GAACAATAGGCCGCAATGCAT 59.932 47.619 5.91 0.00 0.00 3.96
5530 6541 2.104967 CACCTCCTCCGTTATGGTGTA 58.895 52.381 0.00 0.00 42.11 2.90
5538 6549 1.814248 GCTGAAAACACCTCCTCCGTT 60.814 52.381 0.00 0.00 0.00 4.44
5547 6558 1.338020 CCCTTGACAGCTGAAAACACC 59.662 52.381 23.35 0.82 0.00 4.16
5554 6565 2.106338 TGTTGAATCCCTTGACAGCTGA 59.894 45.455 23.35 0.00 0.00 4.26
5567 6578 7.963981 TCAGAGATATGAAAACGTGTTGAATC 58.036 34.615 0.00 0.00 0.00 2.52
5569 6580 6.128553 GCTCAGAGATATGAAAACGTGTTGAA 60.129 38.462 0.00 0.00 0.00 2.69
5573 6584 4.820897 TGCTCAGAGATATGAAAACGTGT 58.179 39.130 0.00 0.00 0.00 4.49
5577 6588 4.260702 GCAGCTGCTCAGAGATATGAAAAC 60.261 45.833 31.33 0.00 38.21 2.43
5579 6590 3.118519 TGCAGCTGCTCAGAGATATGAAA 60.119 43.478 36.61 10.85 42.66 2.69
5613 6624 4.966274 TGCCCGGGTACAGGTGGT 62.966 66.667 24.63 0.00 43.99 4.16
5635 6647 4.987285 CCGATCAGATGACTACTGGAATTG 59.013 45.833 0.00 0.00 36.22 2.32
5657 6669 0.592148 CGGCCTACTCATCGACTACC 59.408 60.000 0.00 0.00 0.00 3.18
5713 6729 0.040204 CTGCAAGGGTGAAGGGGATT 59.960 55.000 0.00 0.00 0.00 3.01
5714 6730 0.846427 TCTGCAAGGGTGAAGGGGAT 60.846 55.000 0.00 0.00 30.19 3.85
5831 6847 2.185867 GGCTCATCGGTTGCGGTA 59.814 61.111 0.00 0.00 0.00 4.02
5834 6850 2.586079 ATCGGCTCATCGGTTGCG 60.586 61.111 0.00 0.00 0.00 4.85
5844 6860 3.705043 TTTACTCGGTAAGATCGGCTC 57.295 47.619 0.00 0.00 29.41 4.70
5867 6883 3.607078 GCTTGTGCGTTTGAGAAGTTAGG 60.607 47.826 0.00 0.00 0.00 2.69
5878 6894 2.484264 GGATCTTAGTGCTTGTGCGTTT 59.516 45.455 0.00 0.00 43.34 3.60
5912 6928 9.684448 GAAATTCTGGAAGTTCCTCTTAAAAAG 57.316 33.333 22.41 9.10 38.88 2.27
6009 7030 1.474478 GAGAGCGACTCCAAGATCACA 59.526 52.381 0.00 0.00 39.53 3.58
6041 7062 2.384899 CAGAACATGCAGCATCATCG 57.615 50.000 4.38 0.00 0.00 3.84
6080 7102 1.724018 GCAAGCGCAAGATCATATCGC 60.724 52.381 11.47 11.80 45.34 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.