Multiple sequence alignment - TraesCS1D01G224600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G224600 chr1D 100.000 4284 0 0 546 4829 313207361 313211644 0.000000e+00 7912.0
1 TraesCS1D01G224600 chr1D 100.000 293 0 0 1 293 313206816 313207108 4.250000e-150 542.0
2 TraesCS1D01G224600 chr1D 93.814 97 6 0 1461 1557 381306992 381307088 3.890000e-31 147.0
3 TraesCS1D01G224600 chr1B 92.029 1957 110 21 2409 4335 423585913 423587853 0.000000e+00 2708.0
4 TraesCS1D01G224600 chr1B 91.795 1036 58 21 546 1565 423583083 423584107 0.000000e+00 1417.0
5 TraesCS1D01G224600 chr1B 95.741 634 21 5 1563 2193 423584392 423585022 0.000000e+00 1016.0
6 TraesCS1D01G224600 chr1B 91.124 507 31 7 4333 4829 423587966 423588468 0.000000e+00 675.0
7 TraesCS1D01G224600 chr1B 93.103 203 11 1 91 293 423582854 423583053 1.310000e-75 294.0
8 TraesCS1D01G224600 chr1B 93.814 97 6 0 1461 1557 511444551 511444647 3.890000e-31 147.0
9 TraesCS1D01G224600 chr1A 92.627 1804 103 14 2231 4016 392779613 392781404 0.000000e+00 2567.0
10 TraesCS1D01G224600 chr1A 92.921 1667 80 26 546 2193 392777724 392779371 0.000000e+00 2390.0
11 TraesCS1D01G224600 chr1A 86.667 510 34 16 4054 4554 392781525 392782009 7.110000e-148 534.0
12 TraesCS1D01G224600 chr1A 91.085 258 14 1 45 293 392777437 392777694 1.660000e-89 340.0
13 TraesCS1D01G224600 chr1A 89.583 192 17 1 4602 4793 392782005 392782193 1.740000e-59 241.0
14 TraesCS1D01G224600 chr1A 94.845 97 5 0 1461 1557 481924421 481924517 8.370000e-33 152.0
15 TraesCS1D01G224600 chr5A 92.857 98 5 2 1461 1557 533944283 533944187 1.810000e-29 141.0
16 TraesCS1D01G224600 chr5A 81.452 124 20 3 2716 2837 437204521 437204399 1.110000e-16 99.0
17 TraesCS1D01G224600 chr2A 91.919 99 8 0 1460 1558 657520832 657520734 6.520000e-29 139.0
18 TraesCS1D01G224600 chr2A 84.337 83 9 3 2955 3033 554848927 554849009 1.440000e-10 78.7
19 TraesCS1D01G224600 chr2A 89.062 64 5 1 2972 3033 554880468 554880531 1.440000e-10 78.7
20 TraesCS1D01G224600 chr7A 91.837 98 7 1 1461 1558 678142626 678142722 8.430000e-28 135.0
21 TraesCS1D01G224600 chr5D 91.000 100 8 1 1461 1559 14121919 14122018 3.030000e-27 134.0
22 TraesCS1D01G224600 chr4B 83.065 124 18 3 2716 2837 215916332 215916210 5.110000e-20 110.0
23 TraesCS1D01G224600 chr4B 82.759 116 16 3 2713 2825 344650137 344650251 3.080000e-17 100.0
24 TraesCS1D01G224600 chr2B 83.065 124 18 3 2716 2837 66712570 66712692 5.110000e-20 110.0
25 TraesCS1D01G224600 chr2B 82.090 134 15 7 2918 3044 468669152 468669283 6.610000e-19 106.0
26 TraesCS1D01G224600 chr2B 83.186 113 15 3 2716 2825 760254706 760254595 3.080000e-17 100.0
27 TraesCS1D01G224600 chr6A 83.929 112 15 3 2716 2825 453126785 453126895 2.380000e-18 104.0
28 TraesCS1D01G224600 chr3B 83.784 111 17 1 2716 2825 452756875 452756765 2.380000e-18 104.0
29 TraesCS1D01G224600 chr5B 97.917 48 1 0 2388 2435 5045067 5045020 3.100000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G224600 chr1D 313206816 313211644 4828 False 4227.0 7912 100.0000 1 4829 2 chr1D.!!$F2 4828
1 TraesCS1D01G224600 chr1B 423582854 423588468 5614 False 1222.0 2708 92.7584 91 4829 5 chr1B.!!$F2 4738
2 TraesCS1D01G224600 chr1A 392777437 392782193 4756 False 1214.4 2567 90.5766 45 4793 5 chr1A.!!$F2 4748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
183 184 0.037232 GTCTTCCTCGTTCCCCACAG 60.037 60.0 0.0 0.0 0.00 3.66 F
661 671 0.254178 GCCTCTTCCATCTGCTTCCA 59.746 55.0 0.0 0.0 0.00 3.53 F
1374 1407 1.174783 TCTCGTGGGAGAGTTGCTAC 58.825 55.0 0.0 0.0 44.28 3.58 F
2642 3670 0.040692 CAACCAGACGAGTCGACGAA 60.041 55.0 21.5 0.0 37.03 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1357 1390 0.892358 ACGTAGCAACTCTCCCACGA 60.892 55.000 0.00 0.0 33.81 4.35 R
2538 3565 0.038159 GCTCTAGTTGCTCGTGTGGT 60.038 55.000 3.84 0.0 0.00 4.16 R
2666 3694 0.107831 TGTGCTGTTGTAGGGTGTCC 59.892 55.000 0.00 0.0 0.00 4.02 R
4153 5302 1.070758 AGGGATGTATGTAAGCCGCAG 59.929 52.381 0.00 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 8.956426 AGAATATTTCTTTGGAAAATACGAGCA 58.044 29.630 0.00 0.00 43.51 4.26
28 29 9.226345 GAATATTTCTTTGGAAAATACGAGCAG 57.774 33.333 0.00 0.00 43.51 4.24
29 30 5.371115 TTTCTTTGGAAAATACGAGCAGG 57.629 39.130 0.00 0.00 38.35 4.85
30 31 4.280436 TCTTTGGAAAATACGAGCAGGA 57.720 40.909 0.00 0.00 0.00 3.86
31 32 4.647611 TCTTTGGAAAATACGAGCAGGAA 58.352 39.130 0.00 0.00 0.00 3.36
32 33 5.067273 TCTTTGGAAAATACGAGCAGGAAA 58.933 37.500 0.00 0.00 0.00 3.13
33 34 5.533154 TCTTTGGAAAATACGAGCAGGAAAA 59.467 36.000 0.00 0.00 0.00 2.29
34 35 5.776173 TTGGAAAATACGAGCAGGAAAAA 57.224 34.783 0.00 0.00 0.00 1.94
115 116 0.387929 ACTCCTTTGTCTCGCAACGA 59.612 50.000 0.00 0.00 36.72 3.85
181 182 1.080025 CGTCTTCCTCGTTCCCCAC 60.080 63.158 0.00 0.00 0.00 4.61
183 184 0.037232 GTCTTCCTCGTTCCCCACAG 60.037 60.000 0.00 0.00 0.00 3.66
200 201 1.675972 AGCTCGCTCGTCTTCCTCA 60.676 57.895 0.00 0.00 0.00 3.86
241 251 3.541713 CTCCGCCTCCTACCTGCC 61.542 72.222 0.00 0.00 0.00 4.85
246 256 1.461091 CGCCTCCTACCTGCCGATTA 61.461 60.000 0.00 0.00 0.00 1.75
661 671 0.254178 GCCTCTTCCATCTGCTTCCA 59.746 55.000 0.00 0.00 0.00 3.53
676 686 2.964209 CTTCCATAGCTCCCTCTGGTA 58.036 52.381 0.00 0.00 36.84 3.25
677 687 3.515562 CTTCCATAGCTCCCTCTGGTAT 58.484 50.000 0.00 0.00 36.84 2.73
686 696 3.198853 GCTCCCTCTGGTATTTCTGAAGT 59.801 47.826 0.00 0.00 0.00 3.01
690 700 4.631813 CCCTCTGGTATTTCTGAAGTTTCG 59.368 45.833 0.00 0.00 0.00 3.46
692 702 5.477607 TCTGGTATTTCTGAAGTTTCGGA 57.522 39.130 0.00 0.00 40.65 4.55
693 703 5.479306 TCTGGTATTTCTGAAGTTTCGGAG 58.521 41.667 3.81 0.00 43.00 4.63
696 706 1.892209 TTTCTGAAGTTTCGGAGGCC 58.108 50.000 0.00 0.00 43.00 5.19
724 745 4.737054 CTTTTGCTGCTAGTGGTTATTGG 58.263 43.478 0.00 0.00 0.00 3.16
747 768 6.998074 TGGCGAAATTTTCATCCAGATAGTAT 59.002 34.615 13.18 0.00 31.18 2.12
749 770 8.443937 GGCGAAATTTTCATCCAGATAGTATAC 58.556 37.037 9.66 0.00 0.00 1.47
774 798 9.026121 ACATAGAACTAGGATATTACATCGCTT 57.974 33.333 0.00 0.00 0.00 4.68
804 830 5.716703 GGTTATTATGGCCTTATGGATGCTT 59.283 40.000 3.32 0.00 34.57 3.91
976 1006 2.651455 TGTGATCTGTACCCTACCTCG 58.349 52.381 0.00 0.00 0.00 4.63
978 1008 3.117625 TGTGATCTGTACCCTACCTCGAT 60.118 47.826 0.00 0.00 0.00 3.59
1182 1214 8.876275 ATGTTTTTAATGCGCATCTGATATTT 57.124 26.923 25.53 8.71 0.00 1.40
1225 1257 8.645730 TTACTCGCATATTGTCGGTTAAATAA 57.354 30.769 0.00 0.00 0.00 1.40
1230 1262 6.303022 CGCATATTGTCGGTTAAATAATGCTG 59.697 38.462 0.00 0.00 0.00 4.41
1305 1337 3.191888 AGAGAAGAGCCTGGGTTCTTA 57.808 47.619 16.56 0.00 43.82 2.10
1374 1407 1.174783 TCTCGTGGGAGAGTTGCTAC 58.825 55.000 0.00 0.00 44.28 3.58
1550 1584 3.500680 GCGACACTTATTTTGGGACTGAA 59.499 43.478 0.00 0.00 0.00 3.02
1618 1940 7.491048 GCTTTTACTTGAACAAGATTTTGGTGA 59.509 33.333 19.35 0.00 40.79 4.02
1864 2186 7.378728 GCTATCCTGTAACTTGTTGTGTTTTTC 59.621 37.037 0.00 0.00 0.00 2.29
1920 2242 1.578897 TGGCCCTAAGCATGTGAGTA 58.421 50.000 0.00 0.00 46.50 2.59
1921 2243 1.209504 TGGCCCTAAGCATGTGAGTAC 59.790 52.381 0.00 0.00 46.50 2.73
1922 2244 1.475213 GGCCCTAAGCATGTGAGTACC 60.475 57.143 0.00 0.00 46.50 3.34
1923 2245 1.486726 GCCCTAAGCATGTGAGTACCT 59.513 52.381 0.00 0.00 42.97 3.08
1924 2246 2.743183 GCCCTAAGCATGTGAGTACCTG 60.743 54.545 0.00 0.00 42.97 4.00
1925 2247 2.501723 CCCTAAGCATGTGAGTACCTGT 59.498 50.000 0.00 0.00 0.00 4.00
2124 2455 6.147473 TGACCCTGAACCAGATATACCAATA 58.853 40.000 0.00 0.00 32.44 1.90
2125 2456 6.792473 TGACCCTGAACCAGATATACCAATAT 59.208 38.462 0.00 0.00 32.44 1.28
2180 2511 8.113462 AGGGCACTTTTATGTTTAGGATTTCTA 58.887 33.333 0.00 0.00 0.00 2.10
2193 2524 9.357161 GTTTAGGATTTCTAGACCTCTGAGATA 57.643 37.037 6.17 0.00 35.52 1.98
2194 2525 9.581289 TTTAGGATTTCTAGACCTCTGAGATAG 57.419 37.037 6.17 5.83 35.52 2.08
2196 2527 7.004086 AGGATTTCTAGACCTCTGAGATAGTG 58.996 42.308 6.17 0.00 0.00 2.74
2199 2530 6.816616 TTCTAGACCTCTGAGATAGTGAGA 57.183 41.667 6.17 0.00 0.00 3.27
2201 2532 7.004555 TCTAGACCTCTGAGATAGTGAGATC 57.995 44.000 6.17 0.00 0.00 2.75
2202 2533 5.645056 AGACCTCTGAGATAGTGAGATCA 57.355 43.478 6.17 0.00 0.00 2.92
2203 2534 6.204852 AGACCTCTGAGATAGTGAGATCAT 57.795 41.667 6.17 0.00 0.00 2.45
2204 2535 7.328404 AGACCTCTGAGATAGTGAGATCATA 57.672 40.000 6.17 0.00 0.00 2.15
2206 2537 6.484288 ACCTCTGAGATAGTGAGATCATAGG 58.516 44.000 6.17 4.47 40.22 2.57
2207 2538 6.045459 ACCTCTGAGATAGTGAGATCATAGGT 59.955 42.308 6.17 5.55 41.69 3.08
2208 2539 6.947733 CCTCTGAGATAGTGAGATCATAGGTT 59.052 42.308 6.17 0.00 33.56 3.50
2209 2540 7.451255 CCTCTGAGATAGTGAGATCATAGGTTT 59.549 40.741 6.17 0.00 33.56 3.27
2210 2541 8.402798 TCTGAGATAGTGAGATCATAGGTTTC 57.597 38.462 0.00 0.00 0.00 2.78
2212 2543 8.175925 TGAGATAGTGAGATCATAGGTTTCTG 57.824 38.462 0.00 0.00 0.00 3.02
2213 2544 7.232330 TGAGATAGTGAGATCATAGGTTTCTGG 59.768 40.741 0.00 0.00 0.00 3.86
2251 2869 4.758674 ACAATGGATATTCGCCTTGATCAG 59.241 41.667 0.00 0.00 0.00 2.90
2271 2889 2.508716 AGTTGATCACTCCATGGATGCT 59.491 45.455 16.63 7.51 0.00 3.79
2360 2978 2.105134 TGAGTTTTGAACCCTTCGGCTA 59.895 45.455 0.00 0.00 0.00 3.93
2386 3004 1.388547 TGAAGGGTGTGCAACTGTTC 58.611 50.000 0.00 0.00 38.04 3.18
2432 3459 5.539955 AGGAGCTTTGCCTTTTCATTAAGAA 59.460 36.000 0.00 0.00 29.44 2.52
2433 3460 5.866092 GGAGCTTTGCCTTTTCATTAAGAAG 59.134 40.000 0.00 0.00 37.57 2.85
2436 3463 6.266330 AGCTTTGCCTTTTCATTAAGAAGAGT 59.734 34.615 0.00 0.00 36.88 3.24
2437 3464 7.448469 AGCTTTGCCTTTTCATTAAGAAGAGTA 59.552 33.333 0.00 0.00 36.88 2.59
2438 3465 8.246871 GCTTTGCCTTTTCATTAAGAAGAGTAT 58.753 33.333 0.00 0.00 36.88 2.12
2473 3500 1.788229 AATAGGGAAAATTGGCCGGG 58.212 50.000 2.18 0.00 0.00 5.73
2578 3606 2.028476 CCGACACCTACAACCAGATTCA 60.028 50.000 0.00 0.00 0.00 2.57
2587 3615 1.586154 AACCAGATTCAAAGCCGCCG 61.586 55.000 0.00 0.00 0.00 6.46
2588 3616 1.745115 CCAGATTCAAAGCCGCCGA 60.745 57.895 0.00 0.00 0.00 5.54
2596 3624 3.537206 AAAGCCGCCGAGCTGACTT 62.537 57.895 0.00 0.00 44.11 3.01
2642 3670 0.040692 CAACCAGACGAGTCGACGAA 60.041 55.000 21.50 0.00 37.03 3.85
2665 3693 0.890996 GTCACCCAAGCAACCAGAGG 60.891 60.000 0.00 0.00 0.00 3.69
2666 3694 1.604593 CACCCAAGCAACCAGAGGG 60.605 63.158 0.00 0.00 45.20 4.30
2668 3696 2.538141 CCCAAGCAACCAGAGGGGA 61.538 63.158 0.00 0.00 41.15 4.81
2704 3732 4.274950 GCACAACAGTTTTTGGAGCTACTA 59.725 41.667 0.00 0.00 32.19 1.82
2706 3734 5.295787 CACAACAGTTTTTGGAGCTACTACA 59.704 40.000 0.00 0.00 0.00 2.74
2714 3752 7.444487 AGTTTTTGGAGCTACTACAAACCTAAG 59.556 37.037 4.48 0.00 43.06 2.18
2874 3912 3.917760 CGAGATCCGGAGCCACCC 61.918 72.222 17.84 2.41 34.64 4.61
2903 3941 3.702802 ACATCGGGTGAAGCCGTA 58.297 55.556 19.40 7.96 38.44 4.02
2911 3949 3.307906 TGAAGCCGTACACCGCCT 61.308 61.111 0.00 0.00 34.38 5.52
2916 3954 1.743995 GCCGTACACCGCCTGATTT 60.744 57.895 0.00 0.00 34.38 2.17
2963 4001 2.749044 CGCTGGCATGGCAACTCT 60.749 61.111 23.47 0.00 37.61 3.24
2964 4002 2.882876 GCTGGCATGGCAACTCTG 59.117 61.111 23.47 12.01 37.61 3.35
2989 4029 4.013728 CGATAGTCTTATCTGGCTAGGCT 58.986 47.826 18.18 0.00 34.70 4.58
2990 4030 4.095782 CGATAGTCTTATCTGGCTAGGCTC 59.904 50.000 18.18 0.95 34.70 4.70
3068 4110 1.621814 CCGACAGAAACAGGGGACTTA 59.378 52.381 0.00 0.00 40.21 2.24
3075 4117 5.955959 ACAGAAACAGGGGACTTAAACTTTT 59.044 36.000 0.00 0.00 40.21 2.27
3076 4118 6.127451 ACAGAAACAGGGGACTTAAACTTTTG 60.127 38.462 0.00 0.00 40.21 2.44
3080 4122 4.141111 ACAGGGGACTTAAACTTTTGCCTA 60.141 41.667 0.00 0.00 40.21 3.93
3096 4138 4.689612 TGCCTAGAGGATTCAATACCAC 57.310 45.455 0.00 0.00 37.39 4.16
3099 4141 4.503991 GCCTAGAGGATTCAATACCACAGG 60.504 50.000 0.00 0.00 37.39 4.00
3111 4153 2.145397 ACCACAGGCTTCGAGAGATA 57.855 50.000 0.00 0.00 41.60 1.98
3343 4390 5.052693 ACTATTCTGGCTTTGGCATATGA 57.947 39.130 6.97 0.00 40.87 2.15
3407 4454 4.080356 TCTGATTACCCATCTCACCCAAAG 60.080 45.833 0.00 0.00 32.34 2.77
3416 4463 4.641989 CCATCTCACCCAAAGTAAGGAATG 59.358 45.833 0.00 0.00 0.00 2.67
3857 4905 1.030457 GCATCTTGCAAGGAGATGGG 58.970 55.000 25.73 9.05 46.72 4.00
3945 4993 1.328279 GCCTGGTTTGGTTTACAGCT 58.672 50.000 0.00 0.00 0.00 4.24
3980 5028 1.813753 CCTGGCGGATGGTAACGTG 60.814 63.158 0.00 0.00 42.51 4.49
4067 5216 4.606210 TGGGTAGATAGCCTATAATCGCA 58.394 43.478 9.36 0.00 44.02 5.10
4109 5258 8.988934 GTTGTACATGTCTTCTGTTTAATCAGA 58.011 33.333 11.42 11.42 41.85 3.27
4137 5286 2.627699 GGAGGTTCTGTTTTGCATTCCA 59.372 45.455 0.00 0.00 0.00 3.53
4153 5302 3.297620 CAGGGTTGGCAGGCACAC 61.298 66.667 0.00 0.00 0.00 3.82
4166 5315 0.742990 GGCACACTGCGGCTTACATA 60.743 55.000 0.00 0.00 46.21 2.29
4167 5316 0.373716 GCACACTGCGGCTTACATAC 59.626 55.000 0.00 0.00 31.71 2.39
4168 5317 1.720805 CACACTGCGGCTTACATACA 58.279 50.000 0.00 0.00 0.00 2.29
4169 5318 2.279741 CACACTGCGGCTTACATACAT 58.720 47.619 0.00 0.00 0.00 2.29
4174 5323 1.488812 TGCGGCTTACATACATCCCTT 59.511 47.619 0.00 0.00 0.00 3.95
4231 5380 5.443283 AGAATGCATCAGGATTTCTTGCTA 58.557 37.500 0.00 0.00 35.79 3.49
4241 5390 8.099364 TCAGGATTTCTTGCTACTAAGTTTTG 57.901 34.615 0.00 0.00 0.00 2.44
4252 5401 6.428771 TGCTACTAAGTTTTGTAATGGACACC 59.571 38.462 0.00 0.00 37.96 4.16
4283 5436 4.706842 TGTGAAGACCCTTTTTAGCTCT 57.293 40.909 0.00 0.00 0.00 4.09
4324 5477 3.132824 CACCTTCCATTGGATTTTAGGGC 59.867 47.826 20.42 0.00 32.01 5.19
4340 5611 5.772393 TTAGGGCTATTACATACATGGGG 57.228 43.478 0.00 0.00 0.00 4.96
4342 5613 2.308866 GGGCTATTACATACATGGGGCT 59.691 50.000 0.00 0.00 0.00 5.19
4380 5651 1.724018 GCAAGCGCAAGATCATATCGC 60.724 52.381 11.47 11.80 45.34 4.58
4419 5691 2.384899 CAGAACATGCAGCATCATCG 57.615 50.000 4.38 0.00 0.00 3.84
4451 5723 1.474478 GAGAGCGACTCCAAGATCACA 59.526 52.381 0.00 0.00 39.53 3.58
4498 5784 0.818296 AACGAGGATCTTCGACCCAG 59.182 55.000 30.98 4.05 43.03 4.45
4499 5785 0.034380 ACGAGGATCTTCGACCCAGA 60.034 55.000 30.98 0.00 43.03 3.86
4500 5786 1.323412 CGAGGATCTTCGACCCAGAT 58.677 55.000 21.56 0.00 43.03 2.90
4501 5787 2.158652 ACGAGGATCTTCGACCCAGATA 60.159 50.000 30.98 0.00 43.03 1.98
4502 5788 2.226912 CGAGGATCTTCGACCCAGATAC 59.773 54.545 21.56 0.19 43.03 2.24
4503 5789 2.559231 GAGGATCTTCGACCCAGATACC 59.441 54.545 4.49 5.48 32.50 2.73
4504 5790 2.091278 AGGATCTTCGACCCAGATACCA 60.091 50.000 4.49 0.00 32.50 3.25
4505 5791 2.698797 GGATCTTCGACCCAGATACCAA 59.301 50.000 0.00 0.00 30.70 3.67
4506 5792 3.134081 GGATCTTCGACCCAGATACCAAA 59.866 47.826 0.00 0.00 30.70 3.28
4548 5834 9.684448 GAAATTCTGGAAGTTCCTCTTAAAAAG 57.316 33.333 22.41 9.10 38.88 2.27
4582 5868 2.484264 GGATCTTAGTGCTTGTGCGTTT 59.516 45.455 0.00 0.00 43.34 3.60
4593 5879 3.607078 GCTTGTGCGTTTGAGAAGTTAGG 60.607 47.826 0.00 0.00 0.00 2.69
4616 5902 3.705043 TTTACTCGGTAAGATCGGCTC 57.295 47.619 0.00 0.00 29.41 4.70
4626 5912 2.586079 ATCGGCTCATCGGTTGCG 60.586 61.111 0.00 0.00 0.00 4.85
4629 5915 2.185867 GGCTCATCGGTTGCGGTA 59.814 61.111 0.00 0.00 0.00 4.02
4746 6032 0.846427 TCTGCAAGGGTGAAGGGGAT 60.846 55.000 0.00 0.00 30.19 3.85
4747 6033 0.040204 CTGCAAGGGTGAAGGGGATT 59.960 55.000 0.00 0.00 0.00 3.01
4803 6093 0.592148 CGGCCTACTCATCGACTACC 59.408 60.000 0.00 0.00 0.00 3.18
4825 6115 4.987285 CCGATCAGATGACTACTGGAATTG 59.013 45.833 0.00 0.00 36.22 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.956426 TGCTCGTATTTTCCAAAGAAATATTCT 58.044 29.630 0.00 0.00 41.55 2.40
2 3 9.226345 CTGCTCGTATTTTCCAAAGAAATATTC 57.774 33.333 0.00 0.00 41.55 1.75
3 4 8.190784 CCTGCTCGTATTTTCCAAAGAAATATT 58.809 33.333 0.00 0.00 41.55 1.28
4 5 7.556275 TCCTGCTCGTATTTTCCAAAGAAATAT 59.444 33.333 0.00 0.00 41.55 1.28
5 6 6.882140 TCCTGCTCGTATTTTCCAAAGAAATA 59.118 34.615 0.00 0.00 41.55 1.40
6 7 5.710099 TCCTGCTCGTATTTTCCAAAGAAAT 59.290 36.000 0.00 0.00 41.55 2.17
7 8 5.067273 TCCTGCTCGTATTTTCCAAAGAAA 58.933 37.500 0.00 0.00 40.26 2.52
8 9 4.647611 TCCTGCTCGTATTTTCCAAAGAA 58.352 39.130 0.00 0.00 0.00 2.52
9 10 4.280436 TCCTGCTCGTATTTTCCAAAGA 57.720 40.909 0.00 0.00 0.00 2.52
10 11 5.371115 TTTCCTGCTCGTATTTTCCAAAG 57.629 39.130 0.00 0.00 0.00 2.77
11 12 5.776173 TTTTCCTGCTCGTATTTTCCAAA 57.224 34.783 0.00 0.00 0.00 3.28
12 13 5.776173 TTTTTCCTGCTCGTATTTTCCAA 57.224 34.783 0.00 0.00 0.00 3.53
33 34 2.100749 CCCAGCAGGTTTCTTCGTTTTT 59.899 45.455 0.00 0.00 0.00 1.94
34 35 1.681264 CCCAGCAGGTTTCTTCGTTTT 59.319 47.619 0.00 0.00 0.00 2.43
35 36 1.318576 CCCAGCAGGTTTCTTCGTTT 58.681 50.000 0.00 0.00 0.00 3.60
36 37 1.172812 GCCCAGCAGGTTTCTTCGTT 61.173 55.000 0.00 0.00 38.26 3.85
37 38 1.600916 GCCCAGCAGGTTTCTTCGT 60.601 57.895 0.00 0.00 38.26 3.85
38 39 2.335712 GGCCCAGCAGGTTTCTTCG 61.336 63.158 0.00 0.00 38.26 3.79
39 40 2.335712 CGGCCCAGCAGGTTTCTTC 61.336 63.158 0.00 0.00 38.26 2.87
40 41 2.282462 CGGCCCAGCAGGTTTCTT 60.282 61.111 0.00 0.00 38.26 2.52
41 42 4.351054 CCGGCCCAGCAGGTTTCT 62.351 66.667 0.00 0.00 39.00 2.52
115 116 1.006102 GCGGCTATGTATCGCCTGT 60.006 57.895 5.95 0.00 44.11 4.00
181 182 1.226547 GAGGAAGACGAGCGAGCTG 60.227 63.158 0.84 0.00 0.00 4.24
183 184 0.179124 AATGAGGAAGACGAGCGAGC 60.179 55.000 0.00 0.00 0.00 5.03
241 251 1.602165 CCGGATCGAACACCCTAATCG 60.602 57.143 0.00 0.00 37.90 3.34
246 256 0.464452 GAATCCGGATCGAACACCCT 59.536 55.000 19.43 0.00 0.00 4.34
622 632 2.201022 GGCCTCTCCGGAGCGATAA 61.201 63.158 27.39 8.19 38.21 1.75
661 671 4.820775 TCAGAAATACCAGAGGGAGCTAT 58.179 43.478 0.00 0.00 38.05 2.97
671 681 4.631813 CCTCCGAAACTTCAGAAATACCAG 59.368 45.833 0.00 0.00 0.00 4.00
676 686 2.437413 GGCCTCCGAAACTTCAGAAAT 58.563 47.619 0.00 0.00 0.00 2.17
677 687 1.892209 GGCCTCCGAAACTTCAGAAA 58.108 50.000 0.00 0.00 0.00 2.52
696 706 3.386867 CTAGCAGCAAAAGCGGCCG 62.387 63.158 24.05 24.05 37.01 6.13
698 708 1.154150 CACTAGCAGCAAAAGCGGC 60.154 57.895 4.45 4.45 37.01 6.53
711 732 6.616947 TGAAAATTTCGCCAATAACCACTAG 58.383 36.000 0.97 0.00 0.00 2.57
716 737 5.415221 TGGATGAAAATTTCGCCAATAACC 58.585 37.500 14.85 0.71 34.92 2.85
724 745 8.988934 TGTATACTATCTGGATGAAAATTTCGC 58.011 33.333 4.17 0.00 0.00 4.70
747 768 9.682465 AGCGATGTAATATCCTAGTTCTATGTA 57.318 33.333 0.00 0.00 0.00 2.29
749 770 9.862371 AAAGCGATGTAATATCCTAGTTCTATG 57.138 33.333 0.00 0.00 0.00 2.23
753 774 8.215132 CGAAAAAGCGATGTAATATCCTAGTTC 58.785 37.037 0.00 0.00 0.00 3.01
754 775 7.170998 CCGAAAAAGCGATGTAATATCCTAGTT 59.829 37.037 0.00 0.00 0.00 2.24
755 776 6.645415 CCGAAAAAGCGATGTAATATCCTAGT 59.355 38.462 0.00 0.00 0.00 2.57
756 777 6.090898 CCCGAAAAAGCGATGTAATATCCTAG 59.909 42.308 0.00 0.00 0.00 3.02
757 778 5.929992 CCCGAAAAAGCGATGTAATATCCTA 59.070 40.000 0.00 0.00 0.00 2.94
758 779 4.755123 CCCGAAAAAGCGATGTAATATCCT 59.245 41.667 0.00 0.00 0.00 3.24
759 780 4.514066 ACCCGAAAAAGCGATGTAATATCC 59.486 41.667 0.00 0.00 0.00 2.59
770 794 3.368495 GCCATAATAACCCGAAAAAGCG 58.632 45.455 0.00 0.00 0.00 4.68
774 798 5.536916 CCATAAGGCCATAATAACCCGAAAA 59.463 40.000 5.01 0.00 0.00 2.29
804 830 5.048364 AGCGGTGACTATTTTGTTTATGCAA 60.048 36.000 0.00 0.00 0.00 4.08
843 869 9.436957 CCAGTTCCATGTATACTATTTGGATAC 57.563 37.037 14.13 13.93 36.42 2.24
856 882 6.065976 TGACAGAATTCCAGTTCCATGTAT 57.934 37.500 0.65 0.00 0.00 2.29
925 955 3.445096 AGATGAATGGTGCTTAAGCCAAC 59.555 43.478 24.30 16.17 41.18 3.77
978 1008 9.950496 GCCATTCTTTATATCTTCTAATCCTGA 57.050 33.333 0.00 0.00 0.00 3.86
1182 1214 7.041303 TGCGAGTAATGTTACACAAAATTGGTA 60.041 33.333 5.77 0.00 36.12 3.25
1213 1245 7.302524 TGAACTTTCAGCATTATTTAACCGAC 58.697 34.615 0.00 0.00 32.50 4.79
1225 1257 5.278660 CCAGCTTAAGTTGAACTTTCAGCAT 60.279 40.000 28.72 18.06 41.80 3.79
1230 1262 3.317993 TGGCCAGCTTAAGTTGAACTTTC 59.682 43.478 19.74 6.27 39.51 2.62
1305 1337 8.445275 TTCGGACATATAGCAACATGTAAAAT 57.555 30.769 0.00 0.00 35.55 1.82
1355 1388 1.174783 GTAGCAACTCTCCCACGAGA 58.825 55.000 0.00 0.00 43.08 4.04
1357 1390 0.892358 ACGTAGCAACTCTCCCACGA 60.892 55.000 0.00 0.00 33.81 4.35
1359 1392 1.270147 ACAACGTAGCAACTCTCCCAC 60.270 52.381 0.00 0.00 0.00 4.61
1374 1407 4.342772 GCATCTAGCATTGGTAAACAACG 58.657 43.478 0.00 0.00 42.94 4.10
1513 1547 4.878439 AGTGTCGCTGATTTAGTACAACA 58.122 39.130 0.00 0.00 0.00 3.33
1550 1584 5.104900 GGTCCAACAGTTACATCATACTCCT 60.105 44.000 0.00 0.00 0.00 3.69
1920 2242 2.108952 AGAAATTCTGGCAGGAACAGGT 59.891 45.455 15.73 0.00 36.62 4.00
1921 2243 2.800250 AGAAATTCTGGCAGGAACAGG 58.200 47.619 15.73 0.00 36.62 4.00
1922 2244 4.077822 AGAAGAAATTCTGGCAGGAACAG 58.922 43.478 15.73 0.00 37.30 3.16
1923 2245 4.104383 AGAAGAAATTCTGGCAGGAACA 57.896 40.909 15.73 0.00 0.00 3.18
1924 2246 5.221322 ACAAAGAAGAAATTCTGGCAGGAAC 60.221 40.000 15.73 2.28 0.00 3.62
1925 2247 4.895297 ACAAAGAAGAAATTCTGGCAGGAA 59.105 37.500 15.73 8.19 0.00 3.36
2124 2455 7.393515 GGAATAAGAAACAGTGAAAGGTACCAT 59.606 37.037 15.94 0.00 0.00 3.55
2125 2456 6.713450 GGAATAAGAAACAGTGAAAGGTACCA 59.287 38.462 15.94 0.00 0.00 3.25
2140 2471 2.919602 AGTGCCCTCCAGGAATAAGAAA 59.080 45.455 0.00 0.00 38.24 2.52
2180 2511 5.645056 TGATCTCACTATCTCAGAGGTCT 57.355 43.478 0.00 0.00 39.63 3.85
2193 2524 3.135530 GCCCAGAAACCTATGATCTCACT 59.864 47.826 0.00 0.00 0.00 3.41
2194 2525 3.471680 GCCCAGAAACCTATGATCTCAC 58.528 50.000 0.00 0.00 0.00 3.51
2196 2527 2.708325 AGGCCCAGAAACCTATGATCTC 59.292 50.000 0.00 0.00 33.38 2.75
2199 2530 3.392616 CTGTAGGCCCAGAAACCTATGAT 59.607 47.826 0.00 0.00 40.57 2.45
2201 2532 2.505819 ACTGTAGGCCCAGAAACCTATG 59.494 50.000 15.14 0.00 40.57 2.23
2202 2533 2.505819 CACTGTAGGCCCAGAAACCTAT 59.494 50.000 15.14 0.00 40.57 2.57
2203 2534 1.906574 CACTGTAGGCCCAGAAACCTA 59.093 52.381 15.14 0.00 37.50 3.08
2204 2535 0.693049 CACTGTAGGCCCAGAAACCT 59.307 55.000 15.14 0.00 40.24 3.50
2206 2537 0.400594 ACCACTGTAGGCCCAGAAAC 59.599 55.000 15.14 0.00 36.30 2.78
2207 2538 1.145571 AACCACTGTAGGCCCAGAAA 58.854 50.000 15.14 0.00 36.30 2.52
2208 2539 1.145571 AAACCACTGTAGGCCCAGAA 58.854 50.000 15.14 0.00 36.30 3.02
2209 2540 1.626825 GTAAACCACTGTAGGCCCAGA 59.373 52.381 15.14 0.00 36.30 3.86
2210 2541 1.349688 TGTAAACCACTGTAGGCCCAG 59.650 52.381 0.00 2.65 38.45 4.45
2212 2543 2.572209 TTGTAAACCACTGTAGGCCC 57.428 50.000 0.00 0.00 0.00 5.80
2213 2544 2.752903 CCATTGTAAACCACTGTAGGCC 59.247 50.000 0.00 0.00 0.00 5.19
2251 2869 2.928334 AGCATCCATGGAGTGATCAAC 58.072 47.619 21.33 5.79 0.00 3.18
2360 2978 1.412079 TGCACACCCTTCAAGCAAAT 58.588 45.000 0.00 0.00 31.42 2.32
2394 3012 3.551496 CTCCTGCCGGTTGCTCCAA 62.551 63.158 1.90 0.00 42.00 3.53
2395 3013 4.020617 CTCCTGCCGGTTGCTCCA 62.021 66.667 1.90 0.00 42.00 3.86
2473 3500 3.612860 GTGTGTCACTGATGTATCGGTTC 59.387 47.826 4.27 2.26 43.59 3.62
2499 3526 4.854784 GCGCGATCTCGGTGCTGA 62.855 66.667 12.10 0.00 40.23 4.26
2538 3565 0.038159 GCTCTAGTTGCTCGTGTGGT 60.038 55.000 3.84 0.00 0.00 4.16
2578 3606 3.537206 AAGTCAGCTCGGCGGCTTT 62.537 57.895 18.06 9.34 41.00 3.51
2587 3615 1.086634 GTGGATGCCGAAGTCAGCTC 61.087 60.000 0.00 0.00 0.00 4.09
2588 3616 1.078848 GTGGATGCCGAAGTCAGCT 60.079 57.895 0.00 0.00 0.00 4.24
2642 3670 0.478072 TGGTTGCTTGGGTGACTGAT 59.522 50.000 0.00 0.00 0.00 2.90
2665 3693 0.605589 GTGCTGTTGTAGGGTGTCCC 60.606 60.000 0.00 0.00 45.90 4.46
2666 3694 0.107831 TGTGCTGTTGTAGGGTGTCC 59.892 55.000 0.00 0.00 0.00 4.02
2668 3696 1.065053 TGTTGTGCTGTTGTAGGGTGT 60.065 47.619 0.00 0.00 0.00 4.16
2704 3732 2.159014 TCAGCGTGTGTCTTAGGTTTGT 60.159 45.455 0.00 0.00 0.00 2.83
2706 3734 2.480845 GTCAGCGTGTGTCTTAGGTTT 58.519 47.619 0.00 0.00 0.00 3.27
2714 3752 3.916392 CTCGGGGTCAGCGTGTGTC 62.916 68.421 0.00 0.00 0.00 3.67
2735 3773 4.914420 CGGCTCGCCTAGTGCTCG 62.914 72.222 6.35 0.00 39.18 5.03
2766 3804 2.032528 TCGGCTCCAGTTGCTTGG 59.967 61.111 0.00 0.00 39.70 3.61
2839 3877 4.087182 TCTCGATGTCTTCTTAGGGTGTT 58.913 43.478 0.00 0.00 0.00 3.32
2874 3912 1.680522 CCCGATGTGGAGGTCAGAGG 61.681 65.000 0.00 0.00 42.00 3.69
2903 3941 1.315257 GCCATCAAATCAGGCGGTGT 61.315 55.000 0.00 0.00 38.86 4.16
2963 4001 2.959030 AGCCAGATAAGACTATCGTGCA 59.041 45.455 9.84 0.00 39.23 4.57
2964 4002 3.651803 AGCCAGATAAGACTATCGTGC 57.348 47.619 0.00 0.00 39.23 5.34
3051 4093 4.790718 AGTTTAAGTCCCCTGTTTCTGT 57.209 40.909 0.00 0.00 0.00 3.41
3068 4110 7.122799 GGTATTGAATCCTCTAGGCAAAAGTTT 59.877 37.037 0.00 0.00 34.44 2.66
3075 4117 4.037222 TGTGGTATTGAATCCTCTAGGCA 58.963 43.478 0.00 0.00 34.44 4.75
3076 4118 4.503991 CCTGTGGTATTGAATCCTCTAGGC 60.504 50.000 0.00 0.00 34.44 3.93
3080 4122 3.118531 AGCCTGTGGTATTGAATCCTCT 58.881 45.455 0.00 0.00 0.00 3.69
3096 4138 5.633182 GCTCTATTTTATCTCTCGAAGCCTG 59.367 44.000 0.00 0.00 0.00 4.85
3099 4141 5.404066 GGTGCTCTATTTTATCTCTCGAAGC 59.596 44.000 0.00 0.00 0.00 3.86
3111 4153 2.017049 GCATCGTGGGTGCTCTATTTT 58.983 47.619 0.00 0.00 39.45 1.82
3179 4221 0.468029 AAGGTGAACAGTTGGCTGGG 60.468 55.000 0.00 0.00 46.62 4.45
3185 4227 6.329496 ACATAAAACACAAGGTGAACAGTTG 58.671 36.000 2.98 0.00 36.96 3.16
3416 4463 7.798982 GTGCAACTTGAAGATAAAACACTACTC 59.201 37.037 0.00 0.00 0.00 2.59
3766 4813 3.627395 TGATGGTTCACCGCTAGAATT 57.373 42.857 0.00 0.00 39.43 2.17
3857 4905 2.757868 AGCGCCTATCATCCTGAGATAC 59.242 50.000 2.29 0.00 0.00 2.24
3931 4979 5.349824 CTCTTCAGAGCTGTAAACCAAAC 57.650 43.478 0.00 0.00 35.13 2.93
3945 4993 3.415212 CCAGGAAAATGTGCTCTTCAGA 58.585 45.455 0.00 0.00 0.00 3.27
3980 5028 4.874970 AGTGGCTTGAAAAATGATCACAC 58.125 39.130 0.00 0.00 0.00 3.82
4067 5216 7.282224 ACATGTACAACACAACAGTATTGTTCT 59.718 33.333 0.00 0.00 45.53 3.01
4109 5258 4.344679 TGCAAAACAGAACCTCCAATCAAT 59.655 37.500 0.00 0.00 0.00 2.57
4137 5286 3.501911 AGTGTGCCTGCCAACCCT 61.502 61.111 0.00 0.00 0.00 4.34
4153 5302 1.070758 AGGGATGTATGTAAGCCGCAG 59.929 52.381 0.00 0.00 0.00 5.18
4166 5315 4.640771 TGAAACTAAGCTCAAGGGATGT 57.359 40.909 0.00 0.00 0.00 3.06
4167 5316 5.335976 GGTTTGAAACTAAGCTCAAGGGATG 60.336 44.000 8.09 0.00 33.30 3.51
4168 5317 4.767409 GGTTTGAAACTAAGCTCAAGGGAT 59.233 41.667 8.09 0.00 33.30 3.85
4169 5318 4.142038 GGTTTGAAACTAAGCTCAAGGGA 58.858 43.478 8.09 0.00 33.30 4.20
4174 5323 5.189928 TGAACTGGTTTGAAACTAAGCTCA 58.810 37.500 8.09 9.84 0.00 4.26
4202 5351 5.591877 AGAAATCCTGATGCATTCTACAACC 59.408 40.000 0.00 0.00 0.00 3.77
4208 5357 4.279145 AGCAAGAAATCCTGATGCATTCT 58.721 39.130 0.00 0.00 39.42 2.40
4231 5380 7.648039 TTTGGTGTCCATTACAAAACTTAGT 57.352 32.000 0.00 0.00 40.63 2.24
4241 5390 6.150976 TCACAATCAGATTTGGTGTCCATTAC 59.849 38.462 11.52 0.00 31.53 1.89
4252 5401 5.972107 AAGGGTCTTCACAATCAGATTTG 57.028 39.130 0.00 0.00 0.00 2.32
4297 5450 5.405935 AAAATCCAATGGAAGGTGCTTAC 57.594 39.130 5.89 0.00 34.34 2.34
4324 5477 6.942005 TCAATTGAGCCCCATGTATGTAATAG 59.058 38.462 3.38 0.00 0.00 1.73
4340 5611 6.292703 GCTTGCATAAATTCCATCAATTGAGC 60.293 38.462 14.54 8.01 34.69 4.26
4342 5613 5.749588 CGCTTGCATAAATTCCATCAATTGA 59.250 36.000 11.26 11.26 34.69 2.57
4380 5651 3.273434 TGCTGCTAAGATTTGTGCCTAG 58.727 45.455 0.00 0.00 0.00 3.02
4417 5689 4.649705 TCTCCCAACCCCCAGCGA 62.650 66.667 0.00 0.00 0.00 4.93
4418 5690 4.101448 CTCTCCCAACCCCCAGCG 62.101 72.222 0.00 0.00 0.00 5.18
4419 5691 4.432741 GCTCTCCCAACCCCCAGC 62.433 72.222 0.00 0.00 0.00 4.85
4451 5723 1.076632 CCCTCTCTAGGTGGAGCGT 60.077 63.158 0.00 0.00 41.89 5.07
4498 5784 2.973945 AGCTTCAGTCGGTTTGGTATC 58.026 47.619 0.00 0.00 0.00 2.24
4499 5785 3.418684 AAGCTTCAGTCGGTTTGGTAT 57.581 42.857 0.00 0.00 0.00 2.73
4500 5786 2.922740 AAGCTTCAGTCGGTTTGGTA 57.077 45.000 0.00 0.00 0.00 3.25
4501 5787 2.922740 TAAGCTTCAGTCGGTTTGGT 57.077 45.000 0.00 0.00 0.00 3.67
4502 5788 3.334691 TCATAAGCTTCAGTCGGTTTGG 58.665 45.455 0.00 0.00 0.00 3.28
4503 5789 5.356882 TTTCATAAGCTTCAGTCGGTTTG 57.643 39.130 0.00 0.00 0.00 2.93
4504 5790 6.431234 AGAATTTCATAAGCTTCAGTCGGTTT 59.569 34.615 0.00 0.00 0.00 3.27
4505 5791 5.940470 AGAATTTCATAAGCTTCAGTCGGTT 59.060 36.000 0.00 0.00 0.00 4.44
4506 5792 5.352569 CAGAATTTCATAAGCTTCAGTCGGT 59.647 40.000 0.00 0.00 0.00 4.69
4548 5834 5.232414 GCACTAAGATCCTCATGTAAACGAC 59.768 44.000 0.00 0.00 0.00 4.34
4582 5868 6.165700 ACCGAGTAAAAACCTAACTTCTCA 57.834 37.500 0.00 0.00 0.00 3.27
4593 5879 4.179298 AGCCGATCTTACCGAGTAAAAAC 58.821 43.478 0.00 0.00 0.00 2.43
4616 5902 1.794701 CTCATCATACCGCAACCGATG 59.205 52.381 0.00 0.00 36.29 3.84
4626 5912 2.555199 ACTGCGCTTTCTCATCATACC 58.445 47.619 9.73 0.00 0.00 2.73
4629 5915 1.741706 CCAACTGCGCTTTCTCATCAT 59.258 47.619 9.73 0.00 0.00 2.45
4663 5949 1.748950 TTGAGTTTGCTGCAGTGTCA 58.251 45.000 16.64 8.37 0.00 3.58
4709 5995 3.124976 GCAGAAAGTGTTTTTGCAAAGCA 59.875 39.130 12.41 12.48 36.47 3.91
4746 6032 6.373216 CCTTGATAAAACCAGGTCGTAATGAA 59.627 38.462 0.00 0.00 0.00 2.57
4747 6033 5.878116 CCTTGATAAAACCAGGTCGTAATGA 59.122 40.000 0.00 0.00 0.00 2.57
4751 6037 4.895668 ACCTTGATAAAACCAGGTCGTA 57.104 40.909 0.00 0.00 0.00 3.43
4755 6041 6.150474 CGACATTAACCTTGATAAAACCAGGT 59.850 38.462 0.00 0.00 0.00 4.00
4803 6093 5.595885 ACAATTCCAGTAGTCATCTGATCG 58.404 41.667 0.00 0.00 35.20 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.