Multiple sequence alignment - TraesCS1D01G224300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G224300 chr1D 100.000 4511 0 0 1 4511 312966792 312971302 0.000000e+00 8331.0
1 TraesCS1D01G224300 chr1D 82.478 565 79 12 3950 4511 48021511 48022058 1.140000e-130 477.0
2 TraesCS1D01G224300 chr1A 91.572 3156 156 51 577 3691 392523682 392526768 0.000000e+00 4253.0
3 TraesCS1D01G224300 chr1A 96.509 802 20 2 3716 4511 392526837 392527636 0.000000e+00 1319.0
4 TraesCS1D01G224300 chr1A 89.121 239 26 0 4273 4511 47824337 47824575 9.490000e-77 298.0
5 TraesCS1D01G224300 chr1A 100.000 29 0 0 480 508 369055814 369055842 2.000000e-03 54.7
6 TraesCS1D01G224300 chr1A 100.000 29 0 0 525 553 392523656 392523684 2.000000e-03 54.7
7 TraesCS1D01G224300 chr1B 92.204 3027 148 43 601 3597 423203758 423206726 0.000000e+00 4202.0
8 TraesCS1D01G224300 chr1B 96.894 805 18 4 3709 4511 423206952 423207751 0.000000e+00 1341.0
9 TraesCS1D01G224300 chr1B 83.203 512 67 11 4002 4511 67680527 67681021 6.880000e-123 451.0
10 TraesCS1D01G224300 chr1B 82.609 138 22 2 1 137 30876250 30876386 2.200000e-23 121.0
11 TraesCS1D01G224300 chr6B 80.742 431 65 9 1 413 185662107 185661677 2.020000e-83 320.0
12 TraesCS1D01G224300 chr7D 79.439 428 69 16 1 414 500784499 500784921 7.390000e-73 285.0
13 TraesCS1D01G224300 chr2B 88.652 141 16 0 1 141 751312676 751312816 6.000000e-39 172.0
14 TraesCS1D01G224300 chr2B 84.431 167 26 0 1 167 751290031 751290197 1.000000e-36 165.0
15 TraesCS1D01G224300 chr2D 83.234 167 28 0 1 167 323542320 323542154 2.170000e-33 154.0
16 TraesCS1D01G224300 chrUn 73.196 485 100 21 3 479 30134740 30134278 1.010000e-31 148.0
17 TraesCS1D01G224300 chr4A 83.704 135 19 2 4 138 5895888 5895757 1.700000e-24 124.0
18 TraesCS1D01G224300 chr4A 78.161 174 34 4 2896 3067 136617410 136617239 1.720000e-19 108.0
19 TraesCS1D01G224300 chr4D 81.295 139 26 0 3354 3492 336841579 336841717 3.690000e-21 113.0
20 TraesCS1D01G224300 chr4D 78.395 162 31 4 2896 3055 336841151 336841310 7.980000e-18 102.0
21 TraesCS1D01G224300 chr4B 80.576 139 27 0 3354 3492 415122328 415122466 1.720000e-19 108.0
22 TraesCS1D01G224300 chr4B 78.395 162 31 4 2896 3055 415121903 415122062 7.980000e-18 102.0
23 TraesCS1D01G224300 chr3D 97.222 36 1 0 324 359 560945273 560945308 1.350000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G224300 chr1D 312966792 312971302 4510 False 8331.000000 8331 100.000 1 4511 1 chr1D.!!$F2 4510
1 TraesCS1D01G224300 chr1D 48021511 48022058 547 False 477.000000 477 82.478 3950 4511 1 chr1D.!!$F1 561
2 TraesCS1D01G224300 chr1A 392523656 392527636 3980 False 1875.566667 4253 96.027 525 4511 3 chr1A.!!$F3 3986
3 TraesCS1D01G224300 chr1B 423203758 423207751 3993 False 2771.500000 4202 94.549 601 4511 2 chr1B.!!$F3 3910

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.029035 CGATGAAGCCTACGTAGCGT 59.971 55.0 17.41 10.63 44.35 5.07 F
481 482 0.039437 CGATTACAGGGATCGGTCCG 60.039 60.0 9.04 4.39 46.09 4.79 F
520 521 0.107410 AAATGCCGCCCGTCTATGAA 60.107 50.0 0.00 0.00 0.00 2.57 F
522 523 0.532862 ATGCCGCCCGTCTATGAAAG 60.533 55.0 0.00 0.00 0.00 2.62 F
1800 1851 0.685131 CCAATCATTGGCAGGCAGGA 60.685 55.0 2.63 0.00 45.17 3.86 F
2198 2249 0.592637 CATTTCTGCGGCACTGTTCA 59.407 50.0 0.00 0.00 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1098 0.035881 TGCCAAGGCTGAGACTGAAG 59.964 55.000 12.96 0.0 42.51 3.02 R
1768 1819 0.178767 TGATTGGAGTCGGCAGATGG 59.821 55.000 0.00 0.0 0.00 3.51 R
1802 1853 0.179084 CGGATGTGTACCGCTTGGAT 60.179 55.000 0.00 0.0 43.74 3.41 R
1941 1992 1.229359 CTTGATGGGGAGCCAGCAT 59.771 57.895 0.00 0.0 35.99 3.79 R
2881 2937 0.819259 ACTGCAGCGAACCACACAAT 60.819 50.000 15.27 0.0 0.00 2.71 R
4123 4336 0.396435 ATCTTGCGGACACACTTGGA 59.604 50.000 0.00 0.0 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.984749 GGGAGAGATCCGAGCGGC 61.985 72.222 3.59 0.00 34.68 6.53
23 24 2.909965 GGAGAGATCCGAGCGGCT 60.910 66.667 0.00 0.00 34.68 5.52
24 25 1.601197 GGAGAGATCCGAGCGGCTA 60.601 63.158 0.60 0.00 34.68 3.93
25 26 1.582610 GGAGAGATCCGAGCGGCTAG 61.583 65.000 0.60 1.89 34.68 3.42
26 27 0.604243 GAGAGATCCGAGCGGCTAGA 60.604 60.000 11.90 8.13 34.68 2.43
27 28 0.605319 AGAGATCCGAGCGGCTAGAG 60.605 60.000 11.90 2.28 34.68 2.43
28 29 1.582610 GAGATCCGAGCGGCTAGAGG 61.583 65.000 11.90 11.45 34.68 3.69
29 30 3.275832 GATCCGAGCGGCTAGAGGC 62.276 68.421 11.90 0.00 40.90 4.70
37 38 2.579201 GGCTAGAGGCGCAGTCAA 59.421 61.111 10.83 0.00 42.94 3.18
38 39 1.144936 GGCTAGAGGCGCAGTCAAT 59.855 57.895 10.83 0.00 42.94 2.57
39 40 0.389391 GGCTAGAGGCGCAGTCAATA 59.611 55.000 10.83 0.00 42.94 1.90
40 41 1.492720 GCTAGAGGCGCAGTCAATAC 58.507 55.000 10.83 0.00 0.00 1.89
41 42 1.067821 GCTAGAGGCGCAGTCAATACT 59.932 52.381 10.83 0.00 35.91 2.12
42 43 2.482142 GCTAGAGGCGCAGTCAATACTT 60.482 50.000 10.83 0.00 31.97 2.24
43 44 2.015736 AGAGGCGCAGTCAATACTTG 57.984 50.000 10.83 0.00 31.97 3.16
44 45 0.375106 GAGGCGCAGTCAATACTTGC 59.625 55.000 10.83 0.00 34.98 4.01
45 46 0.321564 AGGCGCAGTCAATACTTGCA 60.322 50.000 10.83 0.00 36.62 4.08
46 47 0.734889 GGCGCAGTCAATACTTGCAT 59.265 50.000 10.83 0.00 36.62 3.96
47 48 1.532505 GGCGCAGTCAATACTTGCATG 60.533 52.381 10.83 0.00 36.62 4.06
48 49 1.818850 CGCAGTCAATACTTGCATGC 58.181 50.000 11.82 11.82 38.01 4.06
49 50 1.818850 GCAGTCAATACTTGCATGCG 58.181 50.000 14.09 1.59 34.05 4.73
50 51 1.532505 GCAGTCAATACTTGCATGCGG 60.533 52.381 14.09 10.98 34.05 5.69
51 52 0.734889 AGTCAATACTTGCATGCGGC 59.265 50.000 14.09 0.00 45.13 6.53
52 53 4.978252 CAGTCAATACTTGCATGCGGCG 62.978 54.545 14.09 0.51 38.76 6.46
61 62 4.969196 CATGCGGCGCGGAGGTAT 62.969 66.667 28.09 11.09 0.00 2.73
62 63 4.235762 ATGCGGCGCGGAGGTATT 62.236 61.111 28.09 0.98 0.00 1.89
70 71 3.158648 CGGAGGTATTGCCGGGGA 61.159 66.667 2.18 0.00 43.67 4.81
71 72 2.516888 CGGAGGTATTGCCGGGGAT 61.517 63.158 2.18 0.00 43.67 3.85
72 73 1.073199 GGAGGTATTGCCGGGGATG 59.927 63.158 2.18 0.00 43.70 3.51
73 74 1.705997 GGAGGTATTGCCGGGGATGT 61.706 60.000 2.18 0.00 43.70 3.06
74 75 0.535102 GAGGTATTGCCGGGGATGTG 60.535 60.000 2.18 0.00 43.70 3.21
75 76 2.193536 GGTATTGCCGGGGATGTGC 61.194 63.158 2.18 0.00 0.00 4.57
76 77 2.203139 TATTGCCGGGGATGTGCG 60.203 61.111 2.18 0.00 0.00 5.34
77 78 2.736826 TATTGCCGGGGATGTGCGA 61.737 57.895 2.18 0.00 0.00 5.10
78 79 2.050836 TATTGCCGGGGATGTGCGAT 62.051 55.000 2.18 0.00 33.74 4.58
79 80 3.908285 TATTGCCGGGGATGTGCGATC 62.908 57.143 2.18 0.00 31.69 3.69
81 82 3.860605 CCGGGGATGTGCGATCCA 61.861 66.667 14.76 0.00 39.93 3.41
82 83 2.189257 CGGGGATGTGCGATCCAA 59.811 61.111 14.76 0.00 39.93 3.53
83 84 1.227943 CGGGGATGTGCGATCCAAT 60.228 57.895 14.76 0.00 39.93 3.16
84 85 0.034756 CGGGGATGTGCGATCCAATA 59.965 55.000 14.76 0.00 39.93 1.90
85 86 1.523758 GGGGATGTGCGATCCAATAC 58.476 55.000 14.76 0.03 39.93 1.89
86 87 1.523758 GGGATGTGCGATCCAATACC 58.476 55.000 14.76 0.00 39.93 2.73
87 88 1.072331 GGGATGTGCGATCCAATACCT 59.928 52.381 14.76 0.00 39.93 3.08
88 89 2.146342 GGATGTGCGATCCAATACCTG 58.854 52.381 9.25 0.00 38.09 4.00
90 91 0.463654 TGTGCGATCCAATACCTGGC 60.464 55.000 0.00 0.00 45.98 4.85
91 92 1.148273 TGCGATCCAATACCTGGCC 59.852 57.895 0.00 0.00 45.98 5.36
92 93 1.148273 GCGATCCAATACCTGGCCA 59.852 57.895 4.71 4.71 45.98 5.36
93 94 0.465460 GCGATCCAATACCTGGCCAA 60.465 55.000 7.01 0.00 45.98 4.52
94 95 1.819305 GCGATCCAATACCTGGCCAAT 60.819 52.381 7.01 0.00 45.98 3.16
95 96 2.154462 CGATCCAATACCTGGCCAATC 58.846 52.381 7.01 3.02 45.98 2.67
96 97 2.519013 GATCCAATACCTGGCCAATCC 58.481 52.381 7.01 0.00 45.98 3.01
97 98 1.303898 TCCAATACCTGGCCAATCCA 58.696 50.000 7.01 0.00 45.98 3.41
98 99 1.858910 TCCAATACCTGGCCAATCCAT 59.141 47.619 7.01 0.00 45.98 3.41
99 100 1.965643 CCAATACCTGGCCAATCCATG 59.034 52.381 7.01 3.58 45.50 3.66
107 108 2.809706 CCAATCCATGGCAAGGCG 59.190 61.111 6.96 0.00 43.80 5.52
108 109 2.105528 CAATCCATGGCAAGGCGC 59.894 61.111 6.96 0.00 41.28 6.53
109 110 2.362760 AATCCATGGCAAGGCGCA 60.363 55.556 10.83 0.00 45.17 6.09
110 111 2.420568 AATCCATGGCAAGGCGCAG 61.421 57.895 10.83 0.00 45.17 5.18
111 112 3.650298 ATCCATGGCAAGGCGCAGT 62.650 57.895 10.83 0.00 45.17 4.40
112 113 3.376078 CCATGGCAAGGCGCAGTT 61.376 61.111 10.83 0.00 45.17 3.16
113 114 2.126228 CATGGCAAGGCGCAGTTG 60.126 61.111 10.83 13.70 45.17 3.16
133 134 4.467084 GGAGGTCGGATGCGCCAA 62.467 66.667 18.80 0.00 35.94 4.52
134 135 2.435938 GAGGTCGGATGCGCCAAA 60.436 61.111 18.80 0.00 35.94 3.28
135 136 1.819632 GAGGTCGGATGCGCCAAAT 60.820 57.895 18.80 0.00 35.94 2.32
136 137 1.776034 GAGGTCGGATGCGCCAAATC 61.776 60.000 18.80 0.33 35.94 2.17
137 138 2.715624 GTCGGATGCGCCAAATCC 59.284 61.111 13.82 13.82 40.30 3.01
165 166 4.221422 GCGGCCGCCACAGATCTA 62.221 66.667 39.89 0.00 34.56 1.98
166 167 2.279517 CGGCCGCCACAGATCTAC 60.280 66.667 14.67 0.00 0.00 2.59
167 168 2.279517 GGCCGCCACAGATCTACG 60.280 66.667 3.91 0.00 0.00 3.51
168 169 2.782222 GGCCGCCACAGATCTACGA 61.782 63.158 3.91 0.00 0.00 3.43
169 170 1.299468 GCCGCCACAGATCTACGAG 60.299 63.158 0.00 0.00 0.00 4.18
170 171 1.360551 CCGCCACAGATCTACGAGG 59.639 63.158 0.00 0.00 0.00 4.63
171 172 1.299468 CGCCACAGATCTACGAGGC 60.299 63.158 10.38 10.38 38.73 4.70
172 173 1.816537 GCCACAGATCTACGAGGCA 59.183 57.895 14.20 0.00 41.63 4.75
173 174 0.175760 GCCACAGATCTACGAGGCAA 59.824 55.000 14.20 0.00 41.63 4.52
174 175 1.804372 GCCACAGATCTACGAGGCAAG 60.804 57.143 14.20 0.00 41.63 4.01
175 176 1.751351 CCACAGATCTACGAGGCAAGA 59.249 52.381 0.00 0.00 0.00 3.02
176 177 2.223688 CCACAGATCTACGAGGCAAGAG 60.224 54.545 0.00 0.00 0.00 2.85
177 178 2.685388 CACAGATCTACGAGGCAAGAGA 59.315 50.000 0.00 0.00 0.00 3.10
178 179 2.948979 ACAGATCTACGAGGCAAGAGAG 59.051 50.000 0.00 0.00 0.00 3.20
179 180 3.210227 CAGATCTACGAGGCAAGAGAGA 58.790 50.000 0.00 0.00 0.00 3.10
180 181 3.003275 CAGATCTACGAGGCAAGAGAGAC 59.997 52.174 0.00 0.00 0.00 3.36
181 182 2.491675 TCTACGAGGCAAGAGAGACA 57.508 50.000 0.00 0.00 0.00 3.41
182 183 2.085320 TCTACGAGGCAAGAGAGACAC 58.915 52.381 0.00 0.00 0.00 3.67
183 184 1.813178 CTACGAGGCAAGAGAGACACA 59.187 52.381 0.00 0.00 0.00 3.72
184 185 1.040646 ACGAGGCAAGAGAGACACAA 58.959 50.000 0.00 0.00 0.00 3.33
185 186 1.412710 ACGAGGCAAGAGAGACACAAA 59.587 47.619 0.00 0.00 0.00 2.83
186 187 2.037772 ACGAGGCAAGAGAGACACAAAT 59.962 45.455 0.00 0.00 0.00 2.32
187 188 3.070018 CGAGGCAAGAGAGACACAAATT 58.930 45.455 0.00 0.00 0.00 1.82
188 189 3.124297 CGAGGCAAGAGAGACACAAATTC 59.876 47.826 0.00 0.00 0.00 2.17
189 190 3.070018 AGGCAAGAGAGACACAAATTCG 58.930 45.455 0.00 0.00 0.00 3.34
190 191 2.160417 GGCAAGAGAGACACAAATTCGG 59.840 50.000 0.00 0.00 0.00 4.30
191 192 2.160417 GCAAGAGAGACACAAATTCGGG 59.840 50.000 0.00 0.00 0.00 5.14
192 193 3.403038 CAAGAGAGACACAAATTCGGGT 58.597 45.455 0.00 0.00 0.00 5.28
193 194 3.045601 AGAGAGACACAAATTCGGGTG 57.954 47.619 3.99 3.99 40.78 4.61
194 195 2.076863 GAGAGACACAAATTCGGGTGG 58.923 52.381 8.97 0.00 39.31 4.61
195 196 1.420138 AGAGACACAAATTCGGGTGGT 59.580 47.619 8.97 0.00 39.31 4.16
196 197 1.804748 GAGACACAAATTCGGGTGGTC 59.195 52.381 8.97 0.00 39.31 4.02
197 198 1.142060 AGACACAAATTCGGGTGGTCA 59.858 47.619 8.97 0.00 39.31 4.02
198 199 1.950909 GACACAAATTCGGGTGGTCAA 59.049 47.619 8.97 0.00 39.31 3.18
199 200 1.953686 ACACAAATTCGGGTGGTCAAG 59.046 47.619 8.97 0.00 39.31 3.02
200 201 1.269448 CACAAATTCGGGTGGTCAAGG 59.731 52.381 0.00 0.00 0.00 3.61
201 202 1.144093 ACAAATTCGGGTGGTCAAGGA 59.856 47.619 0.00 0.00 0.00 3.36
202 203 1.539827 CAAATTCGGGTGGTCAAGGAC 59.460 52.381 0.00 0.00 0.00 3.85
210 211 2.577059 GGTCAAGGACCGCGATGA 59.423 61.111 8.23 0.61 43.14 2.92
211 212 1.079405 GGTCAAGGACCGCGATGAA 60.079 57.895 8.23 0.00 43.14 2.57
212 213 1.084370 GGTCAAGGACCGCGATGAAG 61.084 60.000 8.23 0.00 43.14 3.02
213 214 1.447838 TCAAGGACCGCGATGAAGC 60.448 57.895 8.23 0.00 0.00 3.86
214 215 2.125106 AAGGACCGCGATGAAGCC 60.125 61.111 8.23 0.00 0.00 4.35
215 216 2.660064 AAGGACCGCGATGAAGCCT 61.660 57.895 8.23 1.24 0.00 4.58
216 217 1.327690 AAGGACCGCGATGAAGCCTA 61.328 55.000 8.23 0.00 0.00 3.93
217 218 1.591863 GGACCGCGATGAAGCCTAC 60.592 63.158 8.23 0.00 0.00 3.18
218 219 1.944676 GACCGCGATGAAGCCTACG 60.945 63.158 8.23 0.00 0.00 3.51
219 220 2.104331 CCGCGATGAAGCCTACGT 59.896 61.111 8.23 0.00 0.00 3.57
220 221 1.357690 CCGCGATGAAGCCTACGTA 59.642 57.895 8.23 0.00 0.00 3.57
221 222 0.660595 CCGCGATGAAGCCTACGTAG 60.661 60.000 15.92 15.92 0.00 3.51
222 223 1.269444 CGCGATGAAGCCTACGTAGC 61.269 60.000 17.41 12.32 0.00 3.58
223 224 1.269444 GCGATGAAGCCTACGTAGCG 61.269 60.000 17.41 13.60 34.64 4.26
224 225 0.029035 CGATGAAGCCTACGTAGCGT 59.971 55.000 17.41 10.63 44.35 5.07
225 226 1.262417 CGATGAAGCCTACGTAGCGTA 59.738 52.381 17.41 1.45 41.54 4.42
226 227 2.648426 GATGAAGCCTACGTAGCGTAC 58.352 52.381 17.41 8.71 41.54 3.67
269 270 4.083862 GGGTGGGAGAGGCGTCAC 62.084 72.222 9.41 1.82 0.00 3.67
270 271 4.083862 GGTGGGAGAGGCGTCACC 62.084 72.222 13.73 13.73 42.11 4.02
271 272 4.436998 GTGGGAGAGGCGTCACCG 62.437 72.222 15.30 0.00 46.52 4.94
280 281 2.954868 GCGTCACCGGCGTAGATG 60.955 66.667 6.01 9.80 33.68 2.90
281 282 2.795973 CGTCACCGGCGTAGATGA 59.204 61.111 6.01 0.91 0.00 2.92
282 283 1.298413 CGTCACCGGCGTAGATGAG 60.298 63.158 6.01 0.00 0.00 2.90
283 284 1.065928 GTCACCGGCGTAGATGAGG 59.934 63.158 6.01 0.00 0.00 3.86
284 285 2.279517 CACCGGCGTAGATGAGGC 60.280 66.667 6.01 0.00 38.26 4.70
285 286 2.758327 ACCGGCGTAGATGAGGCA 60.758 61.111 6.01 0.00 40.88 4.75
286 287 2.279517 CCGGCGTAGATGAGGCAC 60.280 66.667 6.01 0.00 40.88 5.01
287 288 2.655364 CGGCGTAGATGAGGCACG 60.655 66.667 0.00 0.00 40.88 5.34
288 289 2.279517 GGCGTAGATGAGGCACGG 60.280 66.667 0.00 0.00 40.88 4.94
289 290 2.279517 GCGTAGATGAGGCACGGG 60.280 66.667 0.00 0.00 38.85 5.28
290 291 2.782222 GCGTAGATGAGGCACGGGA 61.782 63.158 0.00 0.00 38.85 5.14
291 292 1.813859 CGTAGATGAGGCACGGGAA 59.186 57.895 0.00 0.00 32.19 3.97
292 293 0.389391 CGTAGATGAGGCACGGGAAT 59.611 55.000 0.00 0.00 32.19 3.01
293 294 1.869754 CGTAGATGAGGCACGGGAATG 60.870 57.143 0.00 0.00 32.19 2.67
294 295 1.139058 GTAGATGAGGCACGGGAATGT 59.861 52.381 0.00 0.00 0.00 2.71
295 296 0.107508 AGATGAGGCACGGGAATGTG 60.108 55.000 0.00 0.00 42.81 3.21
296 297 0.107703 GATGAGGCACGGGAATGTGA 60.108 55.000 0.00 0.00 42.55 3.58
299 300 3.124921 GGCACGGGAATGTGACGG 61.125 66.667 0.00 0.00 42.55 4.79
300 301 3.124921 GCACGGGAATGTGACGGG 61.125 66.667 0.00 0.00 42.55 5.28
301 302 2.435938 CACGGGAATGTGACGGGG 60.436 66.667 0.00 0.00 42.55 5.73
302 303 3.712907 ACGGGAATGTGACGGGGG 61.713 66.667 0.00 0.00 0.00 5.40
303 304 3.395702 CGGGAATGTGACGGGGGA 61.396 66.667 0.00 0.00 0.00 4.81
304 305 2.590092 GGGAATGTGACGGGGGAG 59.410 66.667 0.00 0.00 0.00 4.30
305 306 2.590092 GGAATGTGACGGGGGAGG 59.410 66.667 0.00 0.00 0.00 4.30
306 307 2.124695 GAATGTGACGGGGGAGGC 60.125 66.667 0.00 0.00 0.00 4.70
307 308 4.096003 AATGTGACGGGGGAGGCG 62.096 66.667 0.00 0.00 0.00 5.52
316 317 4.168291 GGGGAGGCGGCAGAGAAG 62.168 72.222 13.08 0.00 0.00 2.85
317 318 3.077556 GGGAGGCGGCAGAGAAGA 61.078 66.667 13.08 0.00 0.00 2.87
318 319 2.498726 GGAGGCGGCAGAGAAGAG 59.501 66.667 13.08 0.00 0.00 2.85
319 320 2.498726 GAGGCGGCAGAGAAGAGG 59.501 66.667 13.08 0.00 0.00 3.69
320 321 2.038007 AGGCGGCAGAGAAGAGGA 59.962 61.111 13.08 0.00 0.00 3.71
321 322 2.015227 GAGGCGGCAGAGAAGAGGAG 62.015 65.000 13.08 0.00 0.00 3.69
322 323 2.055042 GGCGGCAGAGAAGAGGAGA 61.055 63.158 3.07 0.00 0.00 3.71
323 324 1.398958 GGCGGCAGAGAAGAGGAGAT 61.399 60.000 3.07 0.00 0.00 2.75
324 325 0.463620 GCGGCAGAGAAGAGGAGATT 59.536 55.000 0.00 0.00 0.00 2.40
325 326 1.134551 GCGGCAGAGAAGAGGAGATTT 60.135 52.381 0.00 0.00 0.00 2.17
326 327 2.679349 GCGGCAGAGAAGAGGAGATTTT 60.679 50.000 0.00 0.00 0.00 1.82
327 328 3.604582 CGGCAGAGAAGAGGAGATTTTT 58.395 45.455 0.00 0.00 0.00 1.94
328 329 4.759782 CGGCAGAGAAGAGGAGATTTTTA 58.240 43.478 0.00 0.00 0.00 1.52
329 330 4.568760 CGGCAGAGAAGAGGAGATTTTTAC 59.431 45.833 0.00 0.00 0.00 2.01
330 331 5.625656 CGGCAGAGAAGAGGAGATTTTTACT 60.626 44.000 0.00 0.00 0.00 2.24
331 332 5.815222 GGCAGAGAAGAGGAGATTTTTACTC 59.185 44.000 0.00 0.00 0.00 2.59
332 333 5.518487 GCAGAGAAGAGGAGATTTTTACTCG 59.482 44.000 0.00 0.00 35.49 4.18
333 334 6.039616 CAGAGAAGAGGAGATTTTTACTCGG 58.960 44.000 0.00 0.00 35.49 4.63
334 335 4.760878 AGAAGAGGAGATTTTTACTCGGC 58.239 43.478 0.00 0.00 35.49 5.54
335 336 3.545366 AGAGGAGATTTTTACTCGGCC 57.455 47.619 0.00 0.00 35.49 6.13
336 337 2.159085 AGAGGAGATTTTTACTCGGCCG 60.159 50.000 22.12 22.12 35.49 6.13
337 338 0.656259 GGAGATTTTTACTCGGCCGC 59.344 55.000 23.51 2.24 35.49 6.53
338 339 0.656259 GAGATTTTTACTCGGCCGCC 59.344 55.000 23.51 0.00 0.00 6.13
353 354 4.827481 GCCGAGCGATGGAGTAAA 57.173 55.556 0.00 0.00 0.00 2.01
354 355 3.290776 GCCGAGCGATGGAGTAAAT 57.709 52.632 0.00 0.00 0.00 1.40
355 356 2.433868 GCCGAGCGATGGAGTAAATA 57.566 50.000 0.00 0.00 0.00 1.40
356 357 2.960819 GCCGAGCGATGGAGTAAATAT 58.039 47.619 0.00 0.00 0.00 1.28
357 358 4.106029 GCCGAGCGATGGAGTAAATATA 57.894 45.455 0.00 0.00 0.00 0.86
358 359 4.106197 GCCGAGCGATGGAGTAAATATAG 58.894 47.826 0.00 0.00 0.00 1.31
359 360 4.673441 CCGAGCGATGGAGTAAATATAGG 58.327 47.826 0.00 0.00 0.00 2.57
360 361 4.398358 CCGAGCGATGGAGTAAATATAGGA 59.602 45.833 0.00 0.00 0.00 2.94
361 362 5.105877 CCGAGCGATGGAGTAAATATAGGAA 60.106 44.000 0.00 0.00 0.00 3.36
362 363 6.030849 CGAGCGATGGAGTAAATATAGGAAG 58.969 44.000 0.00 0.00 0.00 3.46
363 364 6.287589 AGCGATGGAGTAAATATAGGAAGG 57.712 41.667 0.00 0.00 0.00 3.46
364 365 5.187967 AGCGATGGAGTAAATATAGGAAGGG 59.812 44.000 0.00 0.00 0.00 3.95
365 366 5.627040 GCGATGGAGTAAATATAGGAAGGGG 60.627 48.000 0.00 0.00 0.00 4.79
366 367 5.104900 CGATGGAGTAAATATAGGAAGGGGG 60.105 48.000 0.00 0.00 0.00 5.40
403 404 7.724305 GATACTTTATCCTTCATTAACGCCA 57.276 36.000 0.00 0.00 0.00 5.69
404 405 8.149973 GATACTTTATCCTTCATTAACGCCAA 57.850 34.615 0.00 0.00 0.00 4.52
405 406 8.691661 ATACTTTATCCTTCATTAACGCCAAT 57.308 30.769 0.00 0.00 0.00 3.16
406 407 7.404671 ACTTTATCCTTCATTAACGCCAATT 57.595 32.000 0.00 0.00 0.00 2.32
407 408 8.514330 ACTTTATCCTTCATTAACGCCAATTA 57.486 30.769 0.00 0.00 0.00 1.40
408 409 9.131791 ACTTTATCCTTCATTAACGCCAATTAT 57.868 29.630 0.00 0.00 0.00 1.28
409 410 9.398170 CTTTATCCTTCATTAACGCCAATTATG 57.602 33.333 0.00 0.00 0.00 1.90
426 427 6.831769 CAATTATGGATCGGTTAGATTTCGG 58.168 40.000 0.00 0.00 40.26 4.30
427 428 5.540400 TTATGGATCGGTTAGATTTCGGT 57.460 39.130 0.00 0.00 40.26 4.69
428 429 3.899052 TGGATCGGTTAGATTTCGGTT 57.101 42.857 0.00 0.00 40.26 4.44
429 430 5.540400 ATGGATCGGTTAGATTTCGGTTA 57.460 39.130 0.00 0.00 40.26 2.85
430 431 5.341872 TGGATCGGTTAGATTTCGGTTAA 57.658 39.130 0.00 0.00 40.26 2.01
431 432 5.732633 TGGATCGGTTAGATTTCGGTTAAA 58.267 37.500 0.00 0.00 40.26 1.52
432 433 5.813672 TGGATCGGTTAGATTTCGGTTAAAG 59.186 40.000 0.00 0.00 40.26 1.85
433 434 6.044682 GGATCGGTTAGATTTCGGTTAAAGA 58.955 40.000 0.00 0.00 40.26 2.52
434 435 6.536224 GGATCGGTTAGATTTCGGTTAAAGAA 59.464 38.462 0.00 0.00 40.26 2.52
435 436 7.064966 GGATCGGTTAGATTTCGGTTAAAGAAA 59.935 37.037 9.05 9.05 40.26 2.52
437 438 9.603921 ATCGGTTAGATTTCGGTTAAAGAAATA 57.396 29.630 15.79 4.17 45.18 1.40
438 439 9.434420 TCGGTTAGATTTCGGTTAAAGAAATAA 57.566 29.630 15.79 8.47 45.18 1.40
473 474 9.517868 TTTTATTTTTCTAACCGATTACAGGGA 57.482 29.630 0.00 0.00 0.00 4.20
474 475 9.689501 TTTATTTTTCTAACCGATTACAGGGAT 57.310 29.630 0.00 0.00 0.00 3.85
475 476 7.803279 ATTTTTCTAACCGATTACAGGGATC 57.197 36.000 0.00 0.00 0.00 3.36
476 477 4.579454 TTCTAACCGATTACAGGGATCG 57.421 45.455 0.00 0.00 44.40 3.69
480 481 3.888093 CGATTACAGGGATCGGTCC 57.112 57.895 6.02 6.02 41.89 4.46
481 482 0.039437 CGATTACAGGGATCGGTCCG 60.039 60.000 9.04 4.39 46.09 4.79
482 483 0.317479 GATTACAGGGATCGGTCCGG 59.683 60.000 12.29 6.02 46.09 5.14
483 484 0.398098 ATTACAGGGATCGGTCCGGT 60.398 55.000 12.29 12.12 46.09 5.28
484 485 0.615544 TTACAGGGATCGGTCCGGTT 60.616 55.000 14.87 0.00 46.09 4.44
485 486 0.258484 TACAGGGATCGGTCCGGTTA 59.742 55.000 14.87 0.25 46.09 2.85
486 487 0.398098 ACAGGGATCGGTCCGGTTAT 60.398 55.000 12.29 0.00 46.09 1.89
487 488 0.756903 CAGGGATCGGTCCGGTTATT 59.243 55.000 12.29 0.00 46.09 1.40
488 489 1.965643 CAGGGATCGGTCCGGTTATTA 59.034 52.381 12.29 0.00 46.09 0.98
489 490 2.029290 CAGGGATCGGTCCGGTTATTAG 60.029 54.545 12.29 0.00 46.09 1.73
490 491 1.274447 GGGATCGGTCCGGTTATTAGG 59.726 57.143 12.29 0.00 46.09 2.69
491 492 1.274447 GGATCGGTCCGGTTATTAGGG 59.726 57.143 12.29 0.00 34.13 3.53
492 493 2.242043 GATCGGTCCGGTTATTAGGGA 58.758 52.381 12.29 0.00 0.00 4.20
493 494 2.386829 TCGGTCCGGTTATTAGGGAT 57.613 50.000 12.29 0.00 31.43 3.85
494 495 2.242043 TCGGTCCGGTTATTAGGGATC 58.758 52.381 12.29 0.00 31.43 3.36
495 496 1.068055 CGGTCCGGTTATTAGGGATCG 60.068 57.143 2.34 0.00 46.60 3.69
496 497 1.274447 GGTCCGGTTATTAGGGATCGG 59.726 57.143 0.00 0.00 38.92 4.18
497 498 1.966354 GTCCGGTTATTAGGGATCGGT 59.034 52.381 0.00 0.00 38.70 4.69
498 499 2.366590 GTCCGGTTATTAGGGATCGGTT 59.633 50.000 0.00 0.00 38.70 4.44
499 500 3.573967 GTCCGGTTATTAGGGATCGGTTA 59.426 47.826 0.00 0.00 38.70 2.85
500 501 3.828451 TCCGGTTATTAGGGATCGGTTAG 59.172 47.826 0.00 0.00 38.70 2.34
501 502 3.828451 CCGGTTATTAGGGATCGGTTAGA 59.172 47.826 0.00 0.00 33.63 2.10
502 503 4.281688 CCGGTTATTAGGGATCGGTTAGAA 59.718 45.833 0.00 0.00 33.63 2.10
503 504 5.221501 CCGGTTATTAGGGATCGGTTAGAAA 60.222 44.000 0.00 0.00 33.63 2.52
504 505 6.461640 CGGTTATTAGGGATCGGTTAGAAAT 58.538 40.000 0.00 0.00 0.00 2.17
505 506 6.367969 CGGTTATTAGGGATCGGTTAGAAATG 59.632 42.308 0.00 0.00 0.00 2.32
506 507 6.148976 GGTTATTAGGGATCGGTTAGAAATGC 59.851 42.308 0.00 0.00 0.00 3.56
507 508 2.640316 AGGGATCGGTTAGAAATGCC 57.360 50.000 0.00 0.00 0.00 4.40
508 509 1.202651 AGGGATCGGTTAGAAATGCCG 60.203 52.381 0.00 0.00 46.12 5.69
509 510 0.586802 GGATCGGTTAGAAATGCCGC 59.413 55.000 0.00 0.00 44.58 6.53
510 511 0.586802 GATCGGTTAGAAATGCCGCC 59.413 55.000 0.00 0.00 44.58 6.13
511 512 0.818040 ATCGGTTAGAAATGCCGCCC 60.818 55.000 0.00 0.00 44.58 6.13
512 513 2.819552 CGGTTAGAAATGCCGCCCG 61.820 63.158 0.00 0.00 38.99 6.13
513 514 1.747745 GGTTAGAAATGCCGCCCGT 60.748 57.895 0.00 0.00 0.00 5.28
514 515 1.712018 GGTTAGAAATGCCGCCCGTC 61.712 60.000 0.00 0.00 0.00 4.79
515 516 0.743345 GTTAGAAATGCCGCCCGTCT 60.743 55.000 0.00 0.00 0.00 4.18
516 517 0.825410 TTAGAAATGCCGCCCGTCTA 59.175 50.000 0.00 0.00 0.00 2.59
517 518 1.045407 TAGAAATGCCGCCCGTCTAT 58.955 50.000 0.00 0.00 0.00 1.98
518 519 0.532862 AGAAATGCCGCCCGTCTATG 60.533 55.000 0.00 0.00 0.00 2.23
519 520 0.531974 GAAATGCCGCCCGTCTATGA 60.532 55.000 0.00 0.00 0.00 2.15
520 521 0.107410 AAATGCCGCCCGTCTATGAA 60.107 50.000 0.00 0.00 0.00 2.57
521 522 0.107410 AATGCCGCCCGTCTATGAAA 60.107 50.000 0.00 0.00 0.00 2.69
522 523 0.532862 ATGCCGCCCGTCTATGAAAG 60.533 55.000 0.00 0.00 0.00 2.62
523 524 1.153429 GCCGCCCGTCTATGAAAGT 60.153 57.895 0.00 0.00 0.00 2.66
555 556 4.681978 GTGGTGCTCGGCCGACTT 62.682 66.667 27.28 0.00 0.00 3.01
556 557 4.680237 TGGTGCTCGGCCGACTTG 62.680 66.667 27.28 16.81 0.00 3.16
558 559 4.373116 GTGCTCGGCCGACTTGGA 62.373 66.667 27.28 14.12 42.00 3.53
559 560 4.373116 TGCTCGGCCGACTTGGAC 62.373 66.667 27.28 11.23 45.45 4.02
570 571 5.659048 GCCGACTTGGACAATTCTATTAG 57.341 43.478 1.78 0.00 42.00 1.73
571 572 5.357257 GCCGACTTGGACAATTCTATTAGA 58.643 41.667 1.78 0.00 42.00 2.10
572 573 5.234543 GCCGACTTGGACAATTCTATTAGAC 59.765 44.000 0.00 0.00 42.00 2.59
573 574 5.753921 CCGACTTGGACAATTCTATTAGACC 59.246 44.000 0.00 0.00 42.00 3.85
574 575 6.338146 CGACTTGGACAATTCTATTAGACCA 58.662 40.000 0.00 0.00 0.00 4.02
575 576 6.477033 CGACTTGGACAATTCTATTAGACCAG 59.523 42.308 0.00 0.00 0.00 4.00
576 577 6.116126 ACTTGGACAATTCTATTAGACCAGC 58.884 40.000 0.00 0.00 0.00 4.85
577 578 4.693283 TGGACAATTCTATTAGACCAGCG 58.307 43.478 0.00 0.00 0.00 5.18
578 579 4.404394 TGGACAATTCTATTAGACCAGCGA 59.596 41.667 0.00 0.00 0.00 4.93
707 713 3.681835 GACCGAGAGTGGGCACGT 61.682 66.667 0.00 0.00 36.84 4.49
907 917 2.384828 TGCTCCTTGCTCGGTTATCTA 58.615 47.619 0.00 0.00 43.37 1.98
1014 1032 2.669133 CCCCATGTCGGAGCTCCAA 61.669 63.158 31.67 12.44 36.56 3.53
1078 1096 4.303993 TGCTGCTGCTGCTCGTCA 62.304 61.111 27.67 8.50 40.48 4.35
1079 1097 3.786586 GCTGCTGCTGCTCGTCAC 61.787 66.667 22.10 0.00 40.48 3.67
1080 1098 3.117171 CTGCTGCTGCTCGTCACC 61.117 66.667 17.00 0.00 40.48 4.02
1081 1099 3.586461 CTGCTGCTGCTCGTCACCT 62.586 63.158 17.00 0.00 40.48 4.00
1087 1105 1.011451 GCTGCTCGTCACCTTCAGTC 61.011 60.000 0.00 0.00 0.00 3.51
1230 1257 5.061721 AGCTTCTTCCCTTCTTTTGGTTA 57.938 39.130 0.00 0.00 0.00 2.85
1231 1258 5.454966 AGCTTCTTCCCTTCTTTTGGTTAA 58.545 37.500 0.00 0.00 0.00 2.01
1232 1259 6.077993 AGCTTCTTCCCTTCTTTTGGTTAAT 58.922 36.000 0.00 0.00 0.00 1.40
1233 1260 6.554982 AGCTTCTTCCCTTCTTTTGGTTAATT 59.445 34.615 0.00 0.00 0.00 1.40
1234 1261 7.071196 AGCTTCTTCCCTTCTTTTGGTTAATTT 59.929 33.333 0.00 0.00 0.00 1.82
1235 1262 7.715249 GCTTCTTCCCTTCTTTTGGTTAATTTT 59.285 33.333 0.00 0.00 0.00 1.82
1236 1263 9.613428 CTTCTTCCCTTCTTTTGGTTAATTTTT 57.387 29.630 0.00 0.00 0.00 1.94
1237 1264 8.956533 TCTTCCCTTCTTTTGGTTAATTTTTG 57.043 30.769 0.00 0.00 0.00 2.44
1238 1265 7.497579 TCTTCCCTTCTTTTGGTTAATTTTTGC 59.502 33.333 0.00 0.00 0.00 3.68
1239 1266 6.058833 TCCCTTCTTTTGGTTAATTTTTGCC 58.941 36.000 0.00 0.00 0.00 4.52
1289 1326 9.823647 AAAGTTGAGATGTATACTGATGGTAAG 57.176 33.333 4.17 0.00 33.74 2.34
1291 1328 8.982723 AGTTGAGATGTATACTGATGGTAAGTT 58.017 33.333 4.17 0.00 33.74 2.66
1292 1329 9.601217 GTTGAGATGTATACTGATGGTAAGTTT 57.399 33.333 4.17 0.00 33.74 2.66
1314 1353 4.017177 TCGAACTCTCTCACTGTAGGAA 57.983 45.455 0.00 0.00 0.00 3.36
1326 1365 3.046374 ACTGTAGGAAGGGTGAACAACT 58.954 45.455 0.00 0.00 0.00 3.16
1390 1429 3.756434 CACCATACCTTTCATGTTCGGTT 59.244 43.478 7.62 0.00 0.00 4.44
1441 1480 8.696374 CACTGGGAGAGAATAGAGTGTAAAATA 58.304 37.037 0.00 0.00 0.00 1.40
1470 1509 7.118390 GTGAAAGCCATTATAGTAGTAGCATGG 59.882 40.741 11.30 11.30 35.26 3.66
1473 1513 7.502060 AGCCATTATAGTAGTAGCATGGATT 57.498 36.000 16.94 6.02 34.21 3.01
1501 1541 2.104170 GTCTAGGCAGAGTAGCTTGGT 58.896 52.381 0.00 0.00 34.17 3.67
1577 1626 6.927933 ATTCGCAAGGAAAACGATTAAAAG 57.072 33.333 0.00 0.00 38.36 2.27
1635 1686 6.208007 CCCATCTTCTTAGATTGCATTGCATA 59.792 38.462 12.95 4.15 39.11 3.14
1655 1706 8.310406 TGCATAGATAAACACCAATAAGATCG 57.690 34.615 0.00 0.00 0.00 3.69
1766 1817 2.654079 CCGCTTCTGCTCACTCCCT 61.654 63.158 0.00 0.00 36.97 4.20
1767 1818 1.153667 CGCTTCTGCTCACTCCCTC 60.154 63.158 0.00 0.00 36.97 4.30
1768 1819 1.220477 GCTTCTGCTCACTCCCTCC 59.780 63.158 0.00 0.00 36.03 4.30
1769 1820 1.904032 CTTCTGCTCACTCCCTCCC 59.096 63.158 0.00 0.00 0.00 4.30
1800 1851 0.685131 CCAATCATTGGCAGGCAGGA 60.685 55.000 2.63 0.00 45.17 3.86
1801 1852 1.410004 CAATCATTGGCAGGCAGGAT 58.590 50.000 7.23 7.23 0.00 3.24
1802 1853 2.589720 CAATCATTGGCAGGCAGGATA 58.410 47.619 11.97 0.00 0.00 2.59
1931 1982 2.097918 CGACGACGAGTTCTCCGG 59.902 66.667 0.00 0.00 42.66 5.14
1954 2005 3.414193 CAGGATGCTGGCTCCCCA 61.414 66.667 6.28 0.00 39.32 4.96
2101 2152 2.509561 GCGGTCGGAGAAGCTTCC 60.510 66.667 22.81 13.78 39.69 3.46
2107 2158 1.205893 GTCGGAGAAGCTTCCACTGAT 59.794 52.381 25.19 9.15 39.69 2.90
2115 2166 3.664025 CTTCCACTGATGCGGCGGA 62.664 63.158 9.78 6.17 0.00 5.54
2185 2236 0.613012 GCCTCCTTGTGGCCATTTCT 60.613 55.000 9.72 0.00 44.32 2.52
2198 2249 0.592637 CATTTCTGCGGCACTGTTCA 59.407 50.000 0.00 0.00 0.00 3.18
2217 2268 1.330655 ATCCTGTGCTACCGGTCCAG 61.331 60.000 12.40 13.23 0.00 3.86
2218 2269 2.125512 CTGTGCTACCGGTCCAGC 60.126 66.667 20.40 20.40 38.31 4.85
2453 2505 2.581354 GTCATCGGCTGCCTGTCT 59.419 61.111 17.92 0.00 0.00 3.41
2456 2508 1.812922 CATCGGCTGCCTGTCTGAC 60.813 63.158 17.92 0.00 0.00 3.51
2471 2523 6.398095 CCTGTCTGACTACATGATGTACAAA 58.602 40.000 9.51 0.00 0.00 2.83
2581 2633 1.345415 CAGGAAAAAGGTGGCTGCAAT 59.655 47.619 0.50 0.00 0.00 3.56
2589 2641 1.379642 GGTGGCTGCAATGCTAGGAC 61.380 60.000 6.82 0.00 0.00 3.85
2598 2650 2.094417 GCAATGCTAGGACGAAACTGAC 59.906 50.000 0.00 0.00 0.00 3.51
2602 2654 2.301870 TGCTAGGACGAAACTGACCAAT 59.698 45.455 0.00 0.00 0.00 3.16
2608 2660 5.617252 AGGACGAAACTGACCAATTTAGAA 58.383 37.500 0.00 0.00 0.00 2.10
2609 2661 6.238648 AGGACGAAACTGACCAATTTAGAAT 58.761 36.000 0.00 0.00 0.00 2.40
2610 2662 6.715264 AGGACGAAACTGACCAATTTAGAATT 59.285 34.615 0.00 0.00 0.00 2.17
2612 2664 8.508875 GGACGAAACTGACCAATTTAGAATTTA 58.491 33.333 0.00 0.00 0.00 1.40
2615 2667 9.329913 CGAAACTGACCAATTTAGAATTTACTG 57.670 33.333 0.00 0.00 0.00 2.74
2647 2699 5.964958 ATCATCAAACCAAACAGTACCAG 57.035 39.130 0.00 0.00 0.00 4.00
2648 2700 4.787551 TCATCAAACCAAACAGTACCAGT 58.212 39.130 0.00 0.00 0.00 4.00
2651 2703 7.001674 TCATCAAACCAAACAGTACCAGTAAT 58.998 34.615 0.00 0.00 0.00 1.89
2653 2705 8.788806 CATCAAACCAAACAGTACCAGTAATTA 58.211 33.333 0.00 0.00 0.00 1.40
2654 2706 8.927675 TCAAACCAAACAGTACCAGTAATTAT 57.072 30.769 0.00 0.00 0.00 1.28
2655 2707 9.357161 TCAAACCAAACAGTACCAGTAATTATT 57.643 29.630 0.00 0.00 0.00 1.40
2657 2709 9.974980 AAACCAAACAGTACCAGTAATTATTTG 57.025 29.630 0.00 5.42 0.00 2.32
2658 2710 7.599171 ACCAAACAGTACCAGTAATTATTTGC 58.401 34.615 0.00 0.00 0.00 3.68
2659 2711 7.033185 CCAAACAGTACCAGTAATTATTTGCC 58.967 38.462 0.00 0.00 0.00 4.52
2661 2713 7.954666 AACAGTACCAGTAATTATTTGCCAT 57.045 32.000 0.00 0.00 0.00 4.40
2663 2715 8.361169 ACAGTACCAGTAATTATTTGCCATTT 57.639 30.769 0.00 0.00 0.00 2.32
2664 2716 8.811994 ACAGTACCAGTAATTATTTGCCATTTT 58.188 29.630 0.00 0.00 0.00 1.82
2670 2722 8.460428 CCAGTAATTATTTGCCATTTTGCATTT 58.540 29.630 0.00 0.00 41.70 2.32
2671 2723 9.279904 CAGTAATTATTTGCCATTTTGCATTTG 57.720 29.630 0.00 0.00 41.70 2.32
2672 2724 9.012161 AGTAATTATTTGCCATTTTGCATTTGT 57.988 25.926 0.00 0.00 41.70 2.83
2673 2725 9.063739 GTAATTATTTGCCATTTTGCATTTGTG 57.936 29.630 0.00 0.00 41.70 3.33
2674 2726 6.630444 TTATTTGCCATTTTGCATTTGTGT 57.370 29.167 0.00 0.00 41.70 3.72
2796 2848 1.376683 GTATGCTCCCAACGGCACA 60.377 57.895 0.00 0.00 41.39 4.57
2881 2937 8.696374 AGAGCTGTAGCAGATTAACTAACAATA 58.304 33.333 6.65 0.00 45.16 1.90
2882 2938 9.482627 GAGCTGTAGCAGATTAACTAACAATAT 57.517 33.333 6.65 0.00 45.16 1.28
2883 2939 9.838339 AGCTGTAGCAGATTAACTAACAATATT 57.162 29.630 6.65 0.00 45.16 1.28
3084 3142 1.133407 GTCTTCTTCTGCTCCGACGAT 59.867 52.381 0.00 0.00 0.00 3.73
3085 3143 1.133216 TCTTCTTCTGCTCCGACGATG 59.867 52.381 0.00 0.00 0.00 3.84
3086 3144 0.458543 TTCTTCTGCTCCGACGATGC 60.459 55.000 0.00 0.22 0.00 3.91
3087 3145 1.880340 CTTCTGCTCCGACGATGCC 60.880 63.158 0.00 0.00 0.00 4.40
3088 3146 3.699955 TTCTGCTCCGACGATGCCG 62.700 63.158 0.00 0.00 42.50 5.69
3089 3147 4.193334 CTGCTCCGACGATGCCGA 62.193 66.667 0.00 0.00 39.50 5.54
3090 3148 3.490793 CTGCTCCGACGATGCCGAT 62.491 63.158 0.00 0.00 39.50 4.18
3520 3578 4.326255 CCACCTGAAGATGGCACC 57.674 61.111 0.00 0.00 0.00 5.01
3521 3579 1.379044 CCACCTGAAGATGGCACCC 60.379 63.158 0.00 0.00 0.00 4.61
3552 3610 3.244665 CCCTGATGGAGCATAGCATACAA 60.245 47.826 0.00 0.00 35.39 2.41
3624 3685 2.094700 AGTGGTGTAGCATAGTGTGACG 60.095 50.000 0.00 0.00 0.00 4.35
3659 3720 6.147328 GTGTATTTTCGCTTCACTAAAGACCT 59.853 38.462 0.00 0.00 37.12 3.85
3672 3733 7.332557 TCACTAAAGACCTTTGTAGTTTGTCA 58.667 34.615 5.34 0.00 34.23 3.58
3710 3803 1.103398 ACACAACACCCTGCAGAAGC 61.103 55.000 17.39 0.00 42.57 3.86
4123 4336 3.515502 TGAACAGATCCTTCGAGATTGGT 59.484 43.478 0.00 0.00 0.00 3.67
4191 4404 1.066573 CACGCTCTCATCCCTGAAAGT 60.067 52.381 0.00 0.00 0.00 2.66
4192 4405 2.166459 CACGCTCTCATCCCTGAAAGTA 59.834 50.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.203167 TCGGATCTCTCCCGTCGG 60.203 66.667 3.60 3.60 46.53 4.79
1 2 2.899044 GCTCGGATCTCTCCCGTCG 61.899 68.421 0.00 0.00 46.53 5.12
2 3 2.899044 CGCTCGGATCTCTCCCGTC 61.899 68.421 0.00 0.00 46.53 4.79
3 4 2.902846 CGCTCGGATCTCTCCCGT 60.903 66.667 0.00 0.00 46.53 5.28
5 6 3.984749 GCCGCTCGGATCTCTCCC 61.985 72.222 13.11 0.00 38.45 4.30
6 7 1.582610 CTAGCCGCTCGGATCTCTCC 61.583 65.000 13.11 0.00 37.50 3.71
7 8 0.604243 TCTAGCCGCTCGGATCTCTC 60.604 60.000 13.11 0.00 37.50 3.20
8 9 0.605319 CTCTAGCCGCTCGGATCTCT 60.605 60.000 13.11 2.06 37.50 3.10
9 10 1.582610 CCTCTAGCCGCTCGGATCTC 61.583 65.000 13.11 0.00 37.50 2.75
10 11 1.602323 CCTCTAGCCGCTCGGATCT 60.602 63.158 13.11 3.16 37.50 2.75
11 12 2.958576 CCTCTAGCCGCTCGGATC 59.041 66.667 13.11 0.00 37.50 3.36
12 13 3.299190 GCCTCTAGCCGCTCGGAT 61.299 66.667 13.11 8.60 37.50 4.18
16 17 4.940593 CTGCGCCTCTAGCCGCTC 62.941 72.222 18.31 4.43 40.29 5.03
19 20 2.635229 ATTGACTGCGCCTCTAGCCG 62.635 60.000 4.18 0.00 38.78 5.52
20 21 0.389391 TATTGACTGCGCCTCTAGCC 59.611 55.000 4.18 0.00 38.78 3.93
21 22 1.067821 AGTATTGACTGCGCCTCTAGC 59.932 52.381 4.18 0.00 33.41 3.42
22 23 3.444703 AAGTATTGACTGCGCCTCTAG 57.555 47.619 4.18 0.00 35.52 2.43
36 37 2.408835 GCGCCGCATGCAAGTATT 59.591 55.556 19.57 0.00 41.33 1.89
37 38 3.940640 CGCGCCGCATGCAAGTAT 61.941 61.111 19.57 0.00 41.33 2.12
44 45 4.969196 ATACCTCCGCGCCGCATG 62.969 66.667 10.75 0.00 0.00 4.06
45 46 4.235762 AATACCTCCGCGCCGCAT 62.236 61.111 10.75 0.00 0.00 4.73
52 53 4.929707 CCCCGGCAATACCTCCGC 62.930 72.222 0.00 0.00 44.01 5.54
53 54 2.516888 ATCCCCGGCAATACCTCCG 61.517 63.158 0.00 0.00 44.89 4.63
54 55 1.073199 CATCCCCGGCAATACCTCC 59.927 63.158 0.00 0.00 35.61 4.30
55 56 0.535102 CACATCCCCGGCAATACCTC 60.535 60.000 0.00 0.00 35.61 3.85
56 57 1.531748 CACATCCCCGGCAATACCT 59.468 57.895 0.00 0.00 35.61 3.08
57 58 2.193536 GCACATCCCCGGCAATACC 61.194 63.158 0.00 0.00 0.00 2.73
58 59 2.542907 CGCACATCCCCGGCAATAC 61.543 63.158 0.00 0.00 0.00 1.89
59 60 2.050836 ATCGCACATCCCCGGCAATA 62.051 55.000 0.00 0.00 0.00 1.90
60 61 3.420206 ATCGCACATCCCCGGCAAT 62.420 57.895 0.00 0.00 0.00 3.56
61 62 4.108299 ATCGCACATCCCCGGCAA 62.108 61.111 0.00 0.00 0.00 4.52
62 63 4.545706 GATCGCACATCCCCGGCA 62.546 66.667 0.00 0.00 0.00 5.69
64 65 2.680974 ATTGGATCGCACATCCCCGG 62.681 60.000 8.84 0.00 37.40 5.73
65 66 0.034756 TATTGGATCGCACATCCCCG 59.965 55.000 8.84 0.00 37.40 5.73
66 67 1.523758 GTATTGGATCGCACATCCCC 58.476 55.000 8.84 0.00 37.40 4.81
67 68 1.072331 AGGTATTGGATCGCACATCCC 59.928 52.381 8.84 0.00 37.40 3.85
68 69 2.146342 CAGGTATTGGATCGCACATCC 58.854 52.381 4.92 4.92 38.66 3.51
91 92 2.105528 GCGCCTTGCCATGGATTG 59.894 61.111 18.40 3.47 37.76 2.67
92 93 2.362760 TGCGCCTTGCCATGGATT 60.363 55.556 18.40 0.00 45.60 3.01
93 94 2.831742 CTGCGCCTTGCCATGGAT 60.832 61.111 18.40 0.00 45.60 3.41
94 95 3.866379 AACTGCGCCTTGCCATGGA 62.866 57.895 18.40 0.00 45.60 3.41
95 96 3.376078 AACTGCGCCTTGCCATGG 61.376 61.111 7.63 7.63 45.60 3.66
96 97 2.126228 CAACTGCGCCTTGCCATG 60.126 61.111 4.18 0.00 45.60 3.66
97 98 4.060038 GCAACTGCGCCTTGCCAT 62.060 61.111 22.95 0.00 45.60 4.40
116 117 3.969250 TTTGGCGCATCCGACCTCC 62.969 63.158 10.83 0.00 43.51 4.30
117 118 1.776034 GATTTGGCGCATCCGACCTC 61.776 60.000 10.83 0.00 43.51 3.85
118 119 1.819632 GATTTGGCGCATCCGACCT 60.820 57.895 10.83 0.00 43.51 3.85
119 120 2.715624 GATTTGGCGCATCCGACC 59.284 61.111 10.83 0.00 43.51 4.79
120 121 2.715624 GGATTTGGCGCATCCGAC 59.284 61.111 10.83 0.00 44.72 4.79
123 124 4.270376 GCCGGATTTGGCGCATCC 62.270 66.667 10.83 12.68 46.75 3.51
148 149 4.221422 TAGATCTGTGGCGGCCGC 62.221 66.667 41.63 41.63 41.06 6.53
149 150 2.279517 GTAGATCTGTGGCGGCCG 60.280 66.667 24.05 24.05 0.00 6.13
150 151 2.279517 CGTAGATCTGTGGCGGCC 60.280 66.667 13.32 13.32 0.00 6.13
151 152 1.299468 CTCGTAGATCTGTGGCGGC 60.299 63.158 5.18 0.00 33.89 6.53
152 153 1.360551 CCTCGTAGATCTGTGGCGG 59.639 63.158 5.18 0.00 33.89 6.13
153 154 1.299468 GCCTCGTAGATCTGTGGCG 60.299 63.158 5.18 5.08 33.89 5.69
154 155 0.175760 TTGCCTCGTAGATCTGTGGC 59.824 55.000 15.70 15.70 40.62 5.01
155 156 1.751351 TCTTGCCTCGTAGATCTGTGG 59.249 52.381 5.18 1.03 33.89 4.17
156 157 2.685388 TCTCTTGCCTCGTAGATCTGTG 59.315 50.000 5.18 0.00 33.89 3.66
157 158 2.948979 CTCTCTTGCCTCGTAGATCTGT 59.051 50.000 5.18 0.00 33.89 3.41
158 159 3.003275 GTCTCTCTTGCCTCGTAGATCTG 59.997 52.174 5.18 0.00 33.89 2.90
159 160 3.211045 GTCTCTCTTGCCTCGTAGATCT 58.789 50.000 0.00 0.00 33.89 2.75
160 161 2.946329 TGTCTCTCTTGCCTCGTAGATC 59.054 50.000 0.00 0.00 33.89 2.75
161 162 2.685897 GTGTCTCTCTTGCCTCGTAGAT 59.314 50.000 0.00 0.00 33.89 1.98
162 163 2.085320 GTGTCTCTCTTGCCTCGTAGA 58.915 52.381 0.00 0.00 0.00 2.59
163 164 1.813178 TGTGTCTCTCTTGCCTCGTAG 59.187 52.381 0.00 0.00 0.00 3.51
164 165 1.905637 TGTGTCTCTCTTGCCTCGTA 58.094 50.000 0.00 0.00 0.00 3.43
165 166 1.040646 TTGTGTCTCTCTTGCCTCGT 58.959 50.000 0.00 0.00 0.00 4.18
166 167 2.154854 TTTGTGTCTCTCTTGCCTCG 57.845 50.000 0.00 0.00 0.00 4.63
167 168 3.124297 CGAATTTGTGTCTCTCTTGCCTC 59.876 47.826 0.00 0.00 0.00 4.70
168 169 3.070018 CGAATTTGTGTCTCTCTTGCCT 58.930 45.455 0.00 0.00 0.00 4.75
169 170 2.160417 CCGAATTTGTGTCTCTCTTGCC 59.840 50.000 0.00 0.00 0.00 4.52
170 171 2.160417 CCCGAATTTGTGTCTCTCTTGC 59.840 50.000 0.00 0.00 0.00 4.01
171 172 3.187227 CACCCGAATTTGTGTCTCTCTTG 59.813 47.826 0.00 0.00 0.00 3.02
172 173 3.403038 CACCCGAATTTGTGTCTCTCTT 58.597 45.455 0.00 0.00 0.00 2.85
173 174 2.289694 CCACCCGAATTTGTGTCTCTCT 60.290 50.000 0.00 0.00 0.00 3.10
174 175 2.076863 CCACCCGAATTTGTGTCTCTC 58.923 52.381 0.00 0.00 0.00 3.20
175 176 1.420138 ACCACCCGAATTTGTGTCTCT 59.580 47.619 0.00 0.00 0.00 3.10
176 177 1.804748 GACCACCCGAATTTGTGTCTC 59.195 52.381 0.00 0.00 0.00 3.36
177 178 1.142060 TGACCACCCGAATTTGTGTCT 59.858 47.619 0.00 0.00 0.00 3.41
178 179 1.600023 TGACCACCCGAATTTGTGTC 58.400 50.000 0.00 0.00 0.00 3.67
179 180 1.953686 CTTGACCACCCGAATTTGTGT 59.046 47.619 0.00 0.00 0.00 3.72
180 181 1.269448 CCTTGACCACCCGAATTTGTG 59.731 52.381 0.00 0.00 0.00 3.33
181 182 1.144093 TCCTTGACCACCCGAATTTGT 59.856 47.619 0.00 0.00 0.00 2.83
182 183 1.539827 GTCCTTGACCACCCGAATTTG 59.460 52.381 0.00 0.00 0.00 2.32
183 184 1.905637 GTCCTTGACCACCCGAATTT 58.094 50.000 0.00 0.00 0.00 1.82
184 185 3.644861 GTCCTTGACCACCCGAATT 57.355 52.632 0.00 0.00 0.00 2.17
194 195 1.696832 GCTTCATCGCGGTCCTTGAC 61.697 60.000 6.13 0.00 0.00 3.18
195 196 1.447838 GCTTCATCGCGGTCCTTGA 60.448 57.895 6.13 0.00 0.00 3.02
196 197 2.464459 GGCTTCATCGCGGTCCTTG 61.464 63.158 6.13 0.00 0.00 3.61
197 198 1.327690 TAGGCTTCATCGCGGTCCTT 61.328 55.000 6.13 0.00 0.00 3.36
198 199 1.756950 TAGGCTTCATCGCGGTCCT 60.757 57.895 6.13 4.06 0.00 3.85
199 200 1.591863 GTAGGCTTCATCGCGGTCC 60.592 63.158 6.13 0.00 0.00 4.46
200 201 1.944676 CGTAGGCTTCATCGCGGTC 60.945 63.158 6.13 0.00 0.00 4.79
201 202 1.378882 TACGTAGGCTTCATCGCGGT 61.379 55.000 6.13 0.00 0.00 5.68
202 203 0.660595 CTACGTAGGCTTCATCGCGG 60.661 60.000 15.07 0.00 0.00 6.46
203 204 1.269444 GCTACGTAGGCTTCATCGCG 61.269 60.000 23.47 0.00 0.00 5.87
204 205 1.269444 CGCTACGTAGGCTTCATCGC 61.269 60.000 23.47 6.18 0.00 4.58
205 206 0.029035 ACGCTACGTAGGCTTCATCG 59.971 55.000 23.47 17.54 38.73 3.84
206 207 2.648426 GTACGCTACGTAGGCTTCATC 58.352 52.381 23.47 4.53 43.06 2.92
207 208 1.003116 CGTACGCTACGTAGGCTTCAT 60.003 52.381 23.47 0.00 46.41 2.57
208 209 0.374758 CGTACGCTACGTAGGCTTCA 59.625 55.000 23.47 2.33 46.41 3.02
209 210 3.139794 CGTACGCTACGTAGGCTTC 57.860 57.895 23.47 6.31 46.41 3.86
252 253 4.083862 GTGACGCCTCTCCCACCC 62.084 72.222 0.00 0.00 0.00 4.61
253 254 4.083862 GGTGACGCCTCTCCCACC 62.084 72.222 0.00 0.00 41.72 4.61
265 266 1.065928 CCTCATCTACGCCGGTGAC 59.934 63.158 24.59 0.00 0.00 3.67
266 267 2.782222 GCCTCATCTACGCCGGTGA 61.782 63.158 24.59 5.95 0.00 4.02
267 268 2.279517 GCCTCATCTACGCCGGTG 60.280 66.667 14.93 14.93 0.00 4.94
268 269 2.758327 TGCCTCATCTACGCCGGT 60.758 61.111 1.90 0.00 0.00 5.28
269 270 2.279517 GTGCCTCATCTACGCCGG 60.280 66.667 0.00 0.00 0.00 6.13
270 271 2.655364 CGTGCCTCATCTACGCCG 60.655 66.667 0.00 0.00 0.00 6.46
271 272 2.279517 CCGTGCCTCATCTACGCC 60.280 66.667 0.00 0.00 36.56 5.68
272 273 2.279517 CCCGTGCCTCATCTACGC 60.280 66.667 0.00 0.00 36.56 4.42
273 274 0.389391 ATTCCCGTGCCTCATCTACG 59.611 55.000 0.00 0.00 37.55 3.51
274 275 1.139058 ACATTCCCGTGCCTCATCTAC 59.861 52.381 0.00 0.00 0.00 2.59
275 276 1.138859 CACATTCCCGTGCCTCATCTA 59.861 52.381 0.00 0.00 0.00 1.98
276 277 0.107508 CACATTCCCGTGCCTCATCT 60.108 55.000 0.00 0.00 0.00 2.90
277 278 0.107703 TCACATTCCCGTGCCTCATC 60.108 55.000 0.00 0.00 36.80 2.92
278 279 0.392998 GTCACATTCCCGTGCCTCAT 60.393 55.000 0.00 0.00 36.80 2.90
279 280 1.003839 GTCACATTCCCGTGCCTCA 60.004 57.895 0.00 0.00 36.80 3.86
280 281 2.100631 CGTCACATTCCCGTGCCTC 61.101 63.158 0.00 0.00 36.80 4.70
281 282 2.047274 CGTCACATTCCCGTGCCT 60.047 61.111 0.00 0.00 36.80 4.75
282 283 3.124921 CCGTCACATTCCCGTGCC 61.125 66.667 0.00 0.00 36.80 5.01
283 284 3.124921 CCCGTCACATTCCCGTGC 61.125 66.667 0.00 0.00 36.80 5.34
284 285 2.435938 CCCCGTCACATTCCCGTG 60.436 66.667 0.00 0.00 38.29 4.94
285 286 3.712907 CCCCCGTCACATTCCCGT 61.713 66.667 0.00 0.00 0.00 5.28
286 287 3.385749 CTCCCCCGTCACATTCCCG 62.386 68.421 0.00 0.00 0.00 5.14
287 288 2.590092 CTCCCCCGTCACATTCCC 59.410 66.667 0.00 0.00 0.00 3.97
288 289 2.590092 CCTCCCCCGTCACATTCC 59.410 66.667 0.00 0.00 0.00 3.01
289 290 2.124695 GCCTCCCCCGTCACATTC 60.125 66.667 0.00 0.00 0.00 2.67
290 291 4.096003 CGCCTCCCCCGTCACATT 62.096 66.667 0.00 0.00 0.00 2.71
299 300 4.168291 CTTCTCTGCCGCCTCCCC 62.168 72.222 0.00 0.00 0.00 4.81
300 301 3.077556 TCTTCTCTGCCGCCTCCC 61.078 66.667 0.00 0.00 0.00 4.30
301 302 2.498726 CTCTTCTCTGCCGCCTCC 59.501 66.667 0.00 0.00 0.00 4.30
302 303 2.015227 CTCCTCTTCTCTGCCGCCTC 62.015 65.000 0.00 0.00 0.00 4.70
303 304 2.038007 TCCTCTTCTCTGCCGCCT 59.962 61.111 0.00 0.00 0.00 5.52
304 305 1.398958 ATCTCCTCTTCTCTGCCGCC 61.399 60.000 0.00 0.00 0.00 6.13
305 306 0.463620 AATCTCCTCTTCTCTGCCGC 59.536 55.000 0.00 0.00 0.00 6.53
306 307 2.977772 AAATCTCCTCTTCTCTGCCG 57.022 50.000 0.00 0.00 0.00 5.69
307 308 5.739959 AGTAAAAATCTCCTCTTCTCTGCC 58.260 41.667 0.00 0.00 0.00 4.85
308 309 5.518487 CGAGTAAAAATCTCCTCTTCTCTGC 59.482 44.000 0.00 0.00 0.00 4.26
309 310 6.039616 CCGAGTAAAAATCTCCTCTTCTCTG 58.960 44.000 0.00 0.00 0.00 3.35
310 311 5.394773 GCCGAGTAAAAATCTCCTCTTCTCT 60.395 44.000 0.00 0.00 0.00 3.10
311 312 4.806775 GCCGAGTAAAAATCTCCTCTTCTC 59.193 45.833 0.00 0.00 0.00 2.87
312 313 4.383226 GGCCGAGTAAAAATCTCCTCTTCT 60.383 45.833 0.00 0.00 0.00 2.85
313 314 3.872182 GGCCGAGTAAAAATCTCCTCTTC 59.128 47.826 0.00 0.00 0.00 2.87
314 315 3.679083 CGGCCGAGTAAAAATCTCCTCTT 60.679 47.826 24.07 0.00 0.00 2.85
315 316 2.159085 CGGCCGAGTAAAAATCTCCTCT 60.159 50.000 24.07 0.00 0.00 3.69
316 317 2.202566 CGGCCGAGTAAAAATCTCCTC 58.797 52.381 24.07 0.00 0.00 3.71
317 318 1.742750 GCGGCCGAGTAAAAATCTCCT 60.743 52.381 33.48 0.00 0.00 3.69
318 319 0.656259 GCGGCCGAGTAAAAATCTCC 59.344 55.000 33.48 1.16 0.00 3.71
319 320 0.656259 GGCGGCCGAGTAAAAATCTC 59.344 55.000 33.48 5.78 0.00 2.75
320 321 2.776659 GGCGGCCGAGTAAAAATCT 58.223 52.632 33.48 0.00 0.00 2.40
336 337 2.433868 TATTTACTCCATCGCTCGGC 57.566 50.000 0.00 0.00 0.00 5.54
337 338 4.398358 TCCTATATTTACTCCATCGCTCGG 59.602 45.833 0.00 0.00 0.00 4.63
338 339 5.562506 TCCTATATTTACTCCATCGCTCG 57.437 43.478 0.00 0.00 0.00 5.03
339 340 6.334202 CCTTCCTATATTTACTCCATCGCTC 58.666 44.000 0.00 0.00 0.00 5.03
340 341 5.187967 CCCTTCCTATATTTACTCCATCGCT 59.812 44.000 0.00 0.00 0.00 4.93
341 342 5.420409 CCCTTCCTATATTTACTCCATCGC 58.580 45.833 0.00 0.00 0.00 4.58
342 343 5.104900 CCCCCTTCCTATATTTACTCCATCG 60.105 48.000 0.00 0.00 0.00 3.84
343 344 6.314899 CCCCCTTCCTATATTTACTCCATC 57.685 45.833 0.00 0.00 0.00 3.51
370 371 1.801178 GGATAAAGTATCCGCAGCAGC 59.199 52.381 0.00 0.00 44.75 5.25
379 380 7.724305 TGGCGTTAATGAAGGATAAAGTATC 57.276 36.000 0.00 0.00 34.42 2.24
380 381 8.691661 ATTGGCGTTAATGAAGGATAAAGTAT 57.308 30.769 0.00 0.00 0.00 2.12
381 382 8.514330 AATTGGCGTTAATGAAGGATAAAGTA 57.486 30.769 0.00 0.00 0.00 2.24
382 383 7.404671 AATTGGCGTTAATGAAGGATAAAGT 57.595 32.000 0.00 0.00 0.00 2.66
383 384 9.398170 CATAATTGGCGTTAATGAAGGATAAAG 57.602 33.333 0.00 0.00 0.00 1.85
384 385 8.356657 CCATAATTGGCGTTAATGAAGGATAAA 58.643 33.333 0.00 0.00 35.85 1.40
385 386 7.721842 TCCATAATTGGCGTTAATGAAGGATAA 59.278 33.333 0.00 0.00 43.29 1.75
386 387 7.227873 TCCATAATTGGCGTTAATGAAGGATA 58.772 34.615 0.00 0.00 43.29 2.59
387 388 6.068010 TCCATAATTGGCGTTAATGAAGGAT 58.932 36.000 0.00 0.00 43.29 3.24
388 389 5.441500 TCCATAATTGGCGTTAATGAAGGA 58.558 37.500 0.00 0.00 43.29 3.36
389 390 5.766150 TCCATAATTGGCGTTAATGAAGG 57.234 39.130 0.00 0.00 43.29 3.46
390 391 6.079763 CGATCCATAATTGGCGTTAATGAAG 58.920 40.000 0.00 0.00 43.29 3.02
391 392 5.049060 CCGATCCATAATTGGCGTTAATGAA 60.049 40.000 0.00 0.00 43.29 2.57
392 393 4.454161 CCGATCCATAATTGGCGTTAATGA 59.546 41.667 0.00 0.00 43.29 2.57
393 394 4.215399 ACCGATCCATAATTGGCGTTAATG 59.785 41.667 0.00 0.00 42.19 1.90
394 395 4.394729 ACCGATCCATAATTGGCGTTAAT 58.605 39.130 0.00 0.00 42.19 1.40
395 396 3.811083 ACCGATCCATAATTGGCGTTAA 58.189 40.909 0.00 0.00 42.19 2.01
396 397 3.478857 ACCGATCCATAATTGGCGTTA 57.521 42.857 0.00 0.00 42.19 3.18
397 398 2.341846 ACCGATCCATAATTGGCGTT 57.658 45.000 0.00 0.00 42.19 4.84
398 399 2.341846 AACCGATCCATAATTGGCGT 57.658 45.000 0.00 0.00 42.19 5.68
399 400 3.659786 TCTAACCGATCCATAATTGGCG 58.340 45.455 0.00 0.00 42.19 5.69
400 401 6.575162 AAATCTAACCGATCCATAATTGGC 57.425 37.500 0.00 0.00 42.19 4.52
401 402 6.128282 CCGAAATCTAACCGATCCATAATTGG 60.128 42.308 0.00 0.00 43.86 3.16
402 403 6.426937 ACCGAAATCTAACCGATCCATAATTG 59.573 38.462 0.00 0.00 0.00 2.32
403 404 6.531021 ACCGAAATCTAACCGATCCATAATT 58.469 36.000 0.00 0.00 0.00 1.40
404 405 6.110411 ACCGAAATCTAACCGATCCATAAT 57.890 37.500 0.00 0.00 0.00 1.28
405 406 5.540400 ACCGAAATCTAACCGATCCATAA 57.460 39.130 0.00 0.00 0.00 1.90
406 407 5.540400 AACCGAAATCTAACCGATCCATA 57.460 39.130 0.00 0.00 0.00 2.74
407 408 4.417426 AACCGAAATCTAACCGATCCAT 57.583 40.909 0.00 0.00 0.00 3.41
408 409 3.899052 AACCGAAATCTAACCGATCCA 57.101 42.857 0.00 0.00 0.00 3.41
409 410 6.044682 TCTTTAACCGAAATCTAACCGATCC 58.955 40.000 0.00 0.00 0.00 3.36
410 411 7.529880 TTCTTTAACCGAAATCTAACCGATC 57.470 36.000 0.00 0.00 0.00 3.69
411 412 7.910441 TTTCTTTAACCGAAATCTAACCGAT 57.090 32.000 0.00 0.00 0.00 4.18
412 413 7.910441 ATTTCTTTAACCGAAATCTAACCGA 57.090 32.000 6.23 0.00 36.62 4.69
447 448 9.517868 TCCCTGTAATCGGTTAGAAAAATAAAA 57.482 29.630 0.00 0.00 0.00 1.52
448 449 9.689501 ATCCCTGTAATCGGTTAGAAAAATAAA 57.310 29.630 0.00 0.00 0.00 1.40
449 450 9.333724 GATCCCTGTAATCGGTTAGAAAAATAA 57.666 33.333 0.00 0.00 0.00 1.40
450 451 7.654520 CGATCCCTGTAATCGGTTAGAAAAATA 59.345 37.037 0.00 0.00 41.71 1.40
451 452 6.482308 CGATCCCTGTAATCGGTTAGAAAAAT 59.518 38.462 0.00 0.00 41.71 1.82
452 453 5.813672 CGATCCCTGTAATCGGTTAGAAAAA 59.186 40.000 0.00 0.00 41.71 1.94
453 454 5.353938 CGATCCCTGTAATCGGTTAGAAAA 58.646 41.667 0.00 0.00 41.71 2.29
454 455 4.940463 CGATCCCTGTAATCGGTTAGAAA 58.060 43.478 0.00 0.00 41.71 2.52
455 456 4.579454 CGATCCCTGTAATCGGTTAGAA 57.421 45.455 0.00 0.00 41.71 2.10
462 463 0.039437 CGGACCGATCCCTGTAATCG 60.039 60.000 8.64 0.00 42.83 3.34
463 464 0.317479 CCGGACCGATCCCTGTAATC 59.683 60.000 17.49 0.00 42.83 1.75
464 465 0.398098 ACCGGACCGATCCCTGTAAT 60.398 55.000 17.49 0.00 42.83 1.89
465 466 0.615544 AACCGGACCGATCCCTGTAA 60.616 55.000 17.49 0.00 42.83 2.41
466 467 0.258484 TAACCGGACCGATCCCTGTA 59.742 55.000 17.49 0.00 42.83 2.74
467 468 0.398098 ATAACCGGACCGATCCCTGT 60.398 55.000 17.49 0.00 42.83 4.00
468 469 0.756903 AATAACCGGACCGATCCCTG 59.243 55.000 17.49 0.00 42.83 4.45
469 470 2.245582 CTAATAACCGGACCGATCCCT 58.754 52.381 17.49 0.00 42.83 4.20
470 471 1.274447 CCTAATAACCGGACCGATCCC 59.726 57.143 17.49 0.00 42.83 3.85
471 472 1.274447 CCCTAATAACCGGACCGATCC 59.726 57.143 17.49 0.00 42.28 3.36
472 473 2.242043 TCCCTAATAACCGGACCGATC 58.758 52.381 17.49 0.00 0.00 3.69
473 474 2.386829 TCCCTAATAACCGGACCGAT 57.613 50.000 17.49 6.41 0.00 4.18
474 475 2.242043 GATCCCTAATAACCGGACCGA 58.758 52.381 17.49 0.00 0.00 4.69
475 476 1.068055 CGATCCCTAATAACCGGACCG 60.068 57.143 9.46 6.99 0.00 4.79
476 477 1.274447 CCGATCCCTAATAACCGGACC 59.726 57.143 9.46 0.00 39.31 4.46
477 478 1.966354 ACCGATCCCTAATAACCGGAC 59.034 52.381 9.46 0.00 40.10 4.79
478 479 2.386829 ACCGATCCCTAATAACCGGA 57.613 50.000 9.46 0.00 40.10 5.14
479 480 3.828451 TCTAACCGATCCCTAATAACCGG 59.172 47.826 0.00 0.00 42.30 5.28
480 481 5.458041 TTCTAACCGATCCCTAATAACCG 57.542 43.478 0.00 0.00 0.00 4.44
481 482 6.148976 GCATTTCTAACCGATCCCTAATAACC 59.851 42.308 0.00 0.00 0.00 2.85
482 483 6.148976 GGCATTTCTAACCGATCCCTAATAAC 59.851 42.308 0.00 0.00 0.00 1.89
483 484 6.235664 GGCATTTCTAACCGATCCCTAATAA 58.764 40.000 0.00 0.00 0.00 1.40
484 485 5.801380 GGCATTTCTAACCGATCCCTAATA 58.199 41.667 0.00 0.00 0.00 0.98
485 486 4.652822 GGCATTTCTAACCGATCCCTAAT 58.347 43.478 0.00 0.00 0.00 1.73
486 487 4.081322 GGCATTTCTAACCGATCCCTAA 57.919 45.455 0.00 0.00 0.00 2.69
487 488 3.764237 GGCATTTCTAACCGATCCCTA 57.236 47.619 0.00 0.00 0.00 3.53
488 489 2.640316 GGCATTTCTAACCGATCCCT 57.360 50.000 0.00 0.00 0.00 4.20
495 496 1.712018 GACGGGCGGCATTTCTAACC 61.712 60.000 12.47 0.00 0.00 2.85
496 497 0.743345 AGACGGGCGGCATTTCTAAC 60.743 55.000 12.47 0.00 0.00 2.34
497 498 0.825410 TAGACGGGCGGCATTTCTAA 59.175 50.000 12.47 0.00 0.00 2.10
498 499 1.045407 ATAGACGGGCGGCATTTCTA 58.955 50.000 12.47 13.09 0.00 2.10
499 500 0.532862 CATAGACGGGCGGCATTTCT 60.533 55.000 12.47 11.21 0.00 2.52
500 501 0.531974 TCATAGACGGGCGGCATTTC 60.532 55.000 12.47 3.23 0.00 2.17
501 502 0.107410 TTCATAGACGGGCGGCATTT 60.107 50.000 12.47 0.00 0.00 2.32
502 503 0.107410 TTTCATAGACGGGCGGCATT 60.107 50.000 12.47 0.00 0.00 3.56
503 504 0.532862 CTTTCATAGACGGGCGGCAT 60.533 55.000 12.47 0.00 0.00 4.40
504 505 1.153449 CTTTCATAGACGGGCGGCA 60.153 57.895 12.47 0.00 0.00 5.69
505 506 0.743345 AACTTTCATAGACGGGCGGC 60.743 55.000 0.00 0.00 0.00 6.53
506 507 1.006832 CAACTTTCATAGACGGGCGG 58.993 55.000 0.00 0.00 0.00 6.13
507 508 2.004583 TCAACTTTCATAGACGGGCG 57.995 50.000 0.00 0.00 0.00 6.13
508 509 3.119955 GGTTTCAACTTTCATAGACGGGC 60.120 47.826 0.00 0.00 0.00 6.13
509 510 4.069304 TGGTTTCAACTTTCATAGACGGG 58.931 43.478 0.00 0.00 0.00 5.28
510 511 4.377022 CGTGGTTTCAACTTTCATAGACGG 60.377 45.833 0.00 0.00 0.00 4.79
511 512 4.377022 CCGTGGTTTCAACTTTCATAGACG 60.377 45.833 0.00 0.00 0.00 4.18
512 513 4.514066 ACCGTGGTTTCAACTTTCATAGAC 59.486 41.667 0.00 0.00 0.00 2.59
513 514 4.710324 ACCGTGGTTTCAACTTTCATAGA 58.290 39.130 0.00 0.00 0.00 1.98
514 515 5.121768 CCTACCGTGGTTTCAACTTTCATAG 59.878 44.000 0.00 0.00 0.00 2.23
515 516 4.998672 CCTACCGTGGTTTCAACTTTCATA 59.001 41.667 0.00 0.00 0.00 2.15
516 517 3.818773 CCTACCGTGGTTTCAACTTTCAT 59.181 43.478 0.00 0.00 0.00 2.57
517 518 3.207778 CCTACCGTGGTTTCAACTTTCA 58.792 45.455 0.00 0.00 0.00 2.69
518 519 3.002965 CACCTACCGTGGTTTCAACTTTC 59.997 47.826 0.00 0.00 38.45 2.62
519 520 2.946990 CACCTACCGTGGTTTCAACTTT 59.053 45.455 0.00 0.00 38.45 2.66
520 521 2.567985 CACCTACCGTGGTTTCAACTT 58.432 47.619 0.00 0.00 38.45 2.66
521 522 2.249844 CACCTACCGTGGTTTCAACT 57.750 50.000 0.00 0.00 38.45 3.16
553 554 5.235186 CGCTGGTCTAATAGAATTGTCCAAG 59.765 44.000 0.00 0.00 0.00 3.61
554 555 5.105106 TCGCTGGTCTAATAGAATTGTCCAA 60.105 40.000 0.00 0.00 0.00 3.53
555 556 4.404394 TCGCTGGTCTAATAGAATTGTCCA 59.596 41.667 0.00 0.00 0.00 4.02
556 557 4.945246 TCGCTGGTCTAATAGAATTGTCC 58.055 43.478 0.00 0.00 0.00 4.02
557 558 5.460419 CACTCGCTGGTCTAATAGAATTGTC 59.540 44.000 0.00 0.00 0.00 3.18
558 559 5.127194 TCACTCGCTGGTCTAATAGAATTGT 59.873 40.000 0.00 0.00 0.00 2.71
559 560 5.592054 TCACTCGCTGGTCTAATAGAATTG 58.408 41.667 0.00 0.00 0.00 2.32
560 561 5.854010 TCACTCGCTGGTCTAATAGAATT 57.146 39.130 0.00 0.00 0.00 2.17
561 562 5.452077 GGTTCACTCGCTGGTCTAATAGAAT 60.452 44.000 0.00 0.00 0.00 2.40
562 563 4.142227 GGTTCACTCGCTGGTCTAATAGAA 60.142 45.833 0.00 0.00 0.00 2.10
563 564 3.380637 GGTTCACTCGCTGGTCTAATAGA 59.619 47.826 0.00 0.00 0.00 1.98
564 565 3.491104 GGGTTCACTCGCTGGTCTAATAG 60.491 52.174 0.00 0.00 0.00 1.73
565 566 2.429610 GGGTTCACTCGCTGGTCTAATA 59.570 50.000 0.00 0.00 0.00 0.98
566 567 1.207329 GGGTTCACTCGCTGGTCTAAT 59.793 52.381 0.00 0.00 0.00 1.73
567 568 0.606604 GGGTTCACTCGCTGGTCTAA 59.393 55.000 0.00 0.00 0.00 2.10
568 569 1.592400 CGGGTTCACTCGCTGGTCTA 61.592 60.000 0.00 0.00 0.00 2.59
569 570 2.932234 CGGGTTCACTCGCTGGTCT 61.932 63.158 0.00 0.00 0.00 3.85
570 571 2.432628 CGGGTTCACTCGCTGGTC 60.433 66.667 0.00 0.00 0.00 4.02
571 572 2.915659 TCGGGTTCACTCGCTGGT 60.916 61.111 0.00 0.00 0.00 4.00
572 573 2.432628 GTCGGGTTCACTCGCTGG 60.433 66.667 0.00 0.00 0.00 4.85
573 574 2.432628 GGTCGGGTTCACTCGCTG 60.433 66.667 0.00 0.00 0.00 5.18
574 575 4.052229 CGGTCGGGTTCACTCGCT 62.052 66.667 0.00 0.00 0.00 4.93
576 577 3.966026 GAGCGGTCGGGTTCACTCG 62.966 68.421 0.00 0.00 0.00 4.18
577 578 2.126031 GAGCGGTCGGGTTCACTC 60.126 66.667 0.00 0.00 0.00 3.51
578 579 2.915659 TGAGCGGTCGGGTTCACT 60.916 61.111 10.46 0.00 0.00 3.41
687 689 2.117423 TGCCCACTCTCGGTCTCA 59.883 61.111 0.00 0.00 0.00 3.27
805 811 3.443976 GACGATGGCTTTGTTGTTTTGT 58.556 40.909 0.00 0.00 0.00 2.83
863 873 1.376466 CAGGGAGGATATTGGGCGG 59.624 63.158 0.00 0.00 0.00 6.13
907 917 3.003763 GGCTCGGGGTCAAGAGGT 61.004 66.667 0.00 0.00 35.19 3.85
1014 1032 2.731571 CCCCATGGATCGACACGGT 61.732 63.158 15.22 0.00 0.00 4.83
1071 1089 0.598562 TGAGACTGAAGGTGACGAGC 59.401 55.000 0.00 0.00 0.00 5.03
1072 1090 1.402194 GCTGAGACTGAAGGTGACGAG 60.402 57.143 0.00 0.00 0.00 4.18
1073 1091 0.598562 GCTGAGACTGAAGGTGACGA 59.401 55.000 0.00 0.00 0.00 4.20
1075 1093 0.972883 AGGCTGAGACTGAAGGTGAC 59.027 55.000 0.00 0.00 0.00 3.67
1076 1094 1.345741 CAAGGCTGAGACTGAAGGTGA 59.654 52.381 0.00 0.00 0.00 4.02
1078 1096 0.689623 CCAAGGCTGAGACTGAAGGT 59.310 55.000 0.00 0.00 0.00 3.50
1079 1097 0.676151 GCCAAGGCTGAGACTGAAGG 60.676 60.000 3.29 0.00 38.26 3.46
1080 1098 0.035881 TGCCAAGGCTGAGACTGAAG 59.964 55.000 12.96 0.00 42.51 3.02
1081 1099 0.250467 GTGCCAAGGCTGAGACTGAA 60.250 55.000 12.96 0.00 42.51 3.02
1087 1105 3.060615 GCAGGTGCCAAGGCTGAG 61.061 66.667 12.96 1.24 42.51 3.35
1230 1257 7.094420 ACAAAAACAAGCAAGTAGGCAAAAATT 60.094 29.630 0.00 0.00 35.83 1.82
1231 1258 6.374053 ACAAAAACAAGCAAGTAGGCAAAAAT 59.626 30.769 0.00 0.00 35.83 1.82
1232 1259 5.703130 ACAAAAACAAGCAAGTAGGCAAAAA 59.297 32.000 0.00 0.00 35.83 1.94
1233 1260 5.241662 ACAAAAACAAGCAAGTAGGCAAAA 58.758 33.333 0.00 0.00 35.83 2.44
1234 1261 4.826556 ACAAAAACAAGCAAGTAGGCAAA 58.173 34.783 0.00 0.00 35.83 3.68
1235 1262 4.464069 ACAAAAACAAGCAAGTAGGCAA 57.536 36.364 0.00 0.00 35.83 4.52
1236 1263 4.464069 AACAAAAACAAGCAAGTAGGCA 57.536 36.364 0.00 0.00 35.83 4.75
1237 1264 5.109210 AGAAACAAAAACAAGCAAGTAGGC 58.891 37.500 0.00 0.00 0.00 3.93
1238 1265 7.595311 AAAGAAACAAAAACAAGCAAGTAGG 57.405 32.000 0.00 0.00 0.00 3.18
1279 1316 6.159988 AGAGAGTTCGAAAACTTACCATCAG 58.840 40.000 0.00 0.00 45.80 2.90
1289 1326 4.918583 CCTACAGTGAGAGAGTTCGAAAAC 59.081 45.833 0.00 0.00 35.50 2.43
1291 1328 4.395625 TCCTACAGTGAGAGAGTTCGAAA 58.604 43.478 0.00 0.00 0.00 3.46
1292 1329 4.017177 TCCTACAGTGAGAGAGTTCGAA 57.983 45.455 0.00 0.00 0.00 3.71
1293 1330 3.697619 TCCTACAGTGAGAGAGTTCGA 57.302 47.619 0.00 0.00 0.00 3.71
1314 1353 0.401395 TCCTCCCAGTTGTTCACCCT 60.401 55.000 0.00 0.00 0.00 4.34
1326 1365 2.268920 GCGTGCATCTTCCTCCCA 59.731 61.111 0.00 0.00 0.00 4.37
1390 1429 3.401033 TGAAATTCAGAGCGTTCCTGA 57.599 42.857 0.00 0.00 38.74 3.86
1441 1480 7.091443 GCTACTACTATAATGGCTTTCACGAT 58.909 38.462 0.00 0.00 0.00 3.73
1470 1509 5.172205 ACTCTGCCTAGACGAAGAAAAATC 58.828 41.667 0.00 0.00 0.00 2.17
1473 1513 4.380655 GCTACTCTGCCTAGACGAAGAAAA 60.381 45.833 0.00 0.00 0.00 2.29
1501 1541 5.105063 CGAGACATGCAGATGAAGAAGTTA 58.895 41.667 0.00 0.00 33.36 2.24
1635 1686 6.099845 ACCTCCGATCTTATTGGTGTTTATCT 59.900 38.462 0.00 0.00 35.20 1.98
1655 1706 2.438434 CACGCCATTCCCACCTCC 60.438 66.667 0.00 0.00 0.00 4.30
1715 1766 0.883833 GACAAGGGACATGCACCAAG 59.116 55.000 8.77 3.45 0.00 3.61
1766 1817 0.982852 ATTGGAGTCGGCAGATGGGA 60.983 55.000 0.00 0.00 0.00 4.37
1767 1818 0.533755 GATTGGAGTCGGCAGATGGG 60.534 60.000 0.00 0.00 0.00 4.00
1768 1819 0.178767 TGATTGGAGTCGGCAGATGG 59.821 55.000 0.00 0.00 0.00 3.51
1769 1820 2.251409 ATGATTGGAGTCGGCAGATG 57.749 50.000 0.00 0.00 0.00 2.90
1797 1848 2.394632 TGTGTACCGCTTGGATATCCT 58.605 47.619 22.35 3.79 36.82 3.24
1800 1851 2.288825 CGGATGTGTACCGCTTGGATAT 60.289 50.000 0.00 0.00 43.74 1.63
1801 1852 1.067974 CGGATGTGTACCGCTTGGATA 59.932 52.381 0.00 0.00 43.74 2.59
1802 1853 0.179084 CGGATGTGTACCGCTTGGAT 60.179 55.000 0.00 0.00 43.74 3.41
1941 1992 1.229359 CTTGATGGGGAGCCAGCAT 59.771 57.895 0.00 0.00 35.99 3.79
2054 2105 3.936203 GGTCACCACCGTGGCTGA 61.936 66.667 17.99 16.18 44.42 4.26
2115 2166 2.914289 GCCTGGTAGGAGCATGCT 59.086 61.111 22.92 22.92 42.36 3.79
2185 2236 1.672030 CAGGATGAACAGTGCCGCA 60.672 57.895 0.00 0.00 39.69 5.69
2198 2249 1.305802 TGGACCGGTAGCACAGGAT 60.306 57.895 7.34 0.00 36.90 3.24
2453 2505 5.623596 CGTCCCTTTGTACATCATGTAGTCA 60.624 44.000 0.00 0.00 32.84 3.41
2456 2508 3.555956 GCGTCCCTTTGTACATCATGTAG 59.444 47.826 0.00 0.00 32.84 2.74
2555 2607 0.313987 CCACCTTTTTCCTGAACCGC 59.686 55.000 0.00 0.00 0.00 5.68
2557 2609 1.341209 CAGCCACCTTTTTCCTGAACC 59.659 52.381 0.00 0.00 0.00 3.62
2581 2633 1.334160 TGGTCAGTTTCGTCCTAGCA 58.666 50.000 0.00 0.00 0.00 3.49
2589 2641 9.329913 CAGTAAATTCTAAATTGGTCAGTTTCG 57.670 33.333 0.00 0.00 0.00 3.46
2621 2673 7.560368 TGGTACTGTTTGGTTTGATGATTTTT 58.440 30.769 0.00 0.00 0.00 1.94
2622 2674 7.118496 TGGTACTGTTTGGTTTGATGATTTT 57.882 32.000 0.00 0.00 0.00 1.82
2623 2675 6.323739 ACTGGTACTGTTTGGTTTGATGATTT 59.676 34.615 0.00 0.00 37.12 2.17
2624 2676 5.833131 ACTGGTACTGTTTGGTTTGATGATT 59.167 36.000 0.00 0.00 37.12 2.57
2626 2678 4.787551 ACTGGTACTGTTTGGTTTGATGA 58.212 39.130 0.00 0.00 37.12 2.92
2627 2679 6.627395 TTACTGGTACTGTTTGGTTTGATG 57.373 37.500 0.00 0.00 41.74 3.07
2630 2682 9.974980 AAATAATTACTGGTACTGTTTGGTTTG 57.025 29.630 0.00 0.00 41.74 2.93
2633 2685 7.309560 GGCAAATAATTACTGGTACTGTTTGGT 60.310 37.037 0.00 0.00 41.74 3.67
2634 2686 7.033185 GGCAAATAATTACTGGTACTGTTTGG 58.967 38.462 0.00 0.00 41.74 3.28
2635 2687 7.598278 TGGCAAATAATTACTGGTACTGTTTG 58.402 34.615 0.00 0.00 41.74 2.93
2637 2689 7.954666 ATGGCAAATAATTACTGGTACTGTT 57.045 32.000 0.00 0.00 41.74 3.16
2638 2690 7.954666 AATGGCAAATAATTACTGGTACTGT 57.045 32.000 0.00 0.00 44.39 3.55
2639 2691 9.086336 CAAAATGGCAAATAATTACTGGTACTG 57.914 33.333 0.00 0.00 0.00 2.74
2641 2693 7.547370 TGCAAAATGGCAAATAATTACTGGTAC 59.453 33.333 0.00 0.00 41.65 3.34
2642 2694 7.615403 TGCAAAATGGCAAATAATTACTGGTA 58.385 30.769 0.00 0.00 41.65 3.25
2643 2695 6.471146 TGCAAAATGGCAAATAATTACTGGT 58.529 32.000 0.00 0.00 41.65 4.00
2644 2696 6.981762 TGCAAAATGGCAAATAATTACTGG 57.018 33.333 0.00 0.00 41.65 4.00
2657 2709 3.967203 ACAACACAAATGCAAAATGGC 57.033 38.095 0.00 0.00 0.00 4.40
2658 2710 5.877031 TGAAACAACACAAATGCAAAATGG 58.123 33.333 0.00 0.00 0.00 3.16
2659 2711 6.773080 TCTGAAACAACACAAATGCAAAATG 58.227 32.000 0.00 0.00 0.00 2.32
2661 2713 6.981762 ATCTGAAACAACACAAATGCAAAA 57.018 29.167 0.00 0.00 0.00 2.44
2663 2715 7.038048 TGTTATCTGAAACAACACAAATGCAA 58.962 30.769 0.00 0.00 36.45 4.08
2664 2716 6.567959 TGTTATCTGAAACAACACAAATGCA 58.432 32.000 0.00 0.00 36.45 3.96
2670 2722 4.887071 AGGCTTGTTATCTGAAACAACACA 59.113 37.500 11.46 0.00 42.78 3.72
2671 2723 5.215160 CAGGCTTGTTATCTGAAACAACAC 58.785 41.667 11.46 8.76 42.78 3.32
2672 2724 4.887071 ACAGGCTTGTTATCTGAAACAACA 59.113 37.500 0.00 6.46 42.78 3.33
2673 2725 5.438761 ACAGGCTTGTTATCTGAAACAAC 57.561 39.130 0.00 4.47 42.78 3.32
2674 2726 4.518970 GGACAGGCTTGTTATCTGAAACAA 59.481 41.667 1.80 13.53 44.81 2.83
2796 2848 1.759445 CCATGGAGATGGTCGAAGAGT 59.241 52.381 5.56 0.00 43.98 3.24
2881 2937 0.819259 ACTGCAGCGAACCACACAAT 60.819 50.000 15.27 0.00 0.00 2.71
2882 2938 1.451207 ACTGCAGCGAACCACACAA 60.451 52.632 15.27 0.00 0.00 3.33
2883 2939 2.179547 CACTGCAGCGAACCACACA 61.180 57.895 15.27 0.00 0.00 3.72
3088 3146 1.519455 CCCTTGTCGACGAGGCATC 60.519 63.158 37.17 2.30 44.60 3.91
3089 3147 2.579201 CCCTTGTCGACGAGGCAT 59.421 61.111 37.17 0.00 44.60 4.40
3090 3148 4.373116 GCCCTTGTCGACGAGGCA 62.373 66.667 37.17 7.46 44.60 4.75
3520 3578 2.513204 CATCAGGGTGCAGCTCGG 60.513 66.667 16.65 7.00 0.00 4.63
3521 3579 2.513204 CCATCAGGGTGCAGCTCG 60.513 66.667 16.65 7.30 0.00 5.03
3552 3610 3.454371 ACGAACTCACTGTAGCAAACT 57.546 42.857 0.00 0.00 0.00 2.66
3634 3695 6.147328 AGGTCTTTAGTGAAGCGAAAATACAC 59.853 38.462 0.00 0.00 35.24 2.90
3653 3714 7.881775 AATCTTGACAAACTACAAAGGTCTT 57.118 32.000 0.00 0.00 0.00 3.01
3659 3720 9.575783 GGTTACAAAATCTTGACAAACTACAAA 57.424 29.630 0.00 0.00 36.33 2.83
3672 3733 7.554835 TGTTGTGTAGTCTGGTTACAAAATCTT 59.445 33.333 0.00 0.00 32.49 2.40
3710 3803 2.478514 TGTGTTGCGTACTTGCACTATG 59.521 45.455 0.00 0.00 46.25 2.23
3711 3804 2.761559 TGTGTTGCGTACTTGCACTAT 58.238 42.857 0.00 0.00 46.25 2.12
3712 3805 2.226602 TGTGTTGCGTACTTGCACTA 57.773 45.000 0.00 0.00 46.25 2.74
3713 3806 1.374560 TTGTGTTGCGTACTTGCACT 58.625 45.000 0.00 0.00 46.25 4.40
3714 3807 1.843753 GTTTGTGTTGCGTACTTGCAC 59.156 47.619 0.00 0.00 46.25 4.57
3928 4140 1.559149 GGTTTTGTTGCTGCGCCATG 61.559 55.000 4.18 0.00 0.00 3.66
3948 4160 3.370978 GTCGTCTGTTATGGTGGATGTTG 59.629 47.826 0.00 0.00 0.00 3.33
4123 4336 0.396435 ATCTTGCGGACACACTTGGA 59.604 50.000 0.00 0.00 0.00 3.53
4266 4479 4.225942 AGCAGGTCCATGTCATTTCTCTTA 59.774 41.667 0.00 0.00 0.00 2.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.