AutoCloner

Multiple sequence alignment - TraesCS1D01G223800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G223800	chr1D	100.000	4403	0	0	1	4403	311684707	311689109	0.000000e+00	8131.0
1	TraesCS1D01G223800	chr1D	95.104	3227	136	12	475	3698	345379907	345376700	0.000000e+00	5064.0
2	TraesCS1D01G223800	chr1D	89.091	55	6	0	3808	3862	321708929	321708983	7.900000e-08	69.4
3	TraesCS1D01G223800	chr1B	94.231	3432	155	16	1	3415	421421560	421424965	0.000000e+00	5201.0
4	TraesCS1D01G223800	chr1B	94.698	3150	148	10	825	3966	421531372	421534510	0.000000e+00	4874.0
5	TraesCS1D01G223800	chr1B	93.513	2929	153	20	825	3731	421494341	421497254	0.000000e+00	4322.0
6	TraesCS1D01G223800	chr1B	91.199	1443	80	18	496	1933	421440306	421441706	0.000000e+00	1917.0
7	TraesCS1D01G223800	chr1B	88.535	471	17	8	3962	4403	421537896	421538358	1.800000e-148	536.0
8	TraesCS1D01G223800	chr1B	82.595	316	45	6	352	666	421426901	421427207	2.020000e-68	270.0
9	TraesCS1D01G223800	chr1B	82.704	318	41	11	352	666	421492990	421493296	2.020000e-68	270.0
10	TraesCS1D01G223800	chr1B	82.278	316	46	6	352	666	421528015	421528321	9.390000e-67	265.0
11	TraesCS1D01G223800	chr1B	88.636	132	8	2	4	129	421426747	421426877	2.120000e-33	154.0
12	TraesCS1D01G223800	chr1A	93.293	3489	195	20	1	3472	391675170	391678636	0.000000e+00	5110.0
13	TraesCS1D01G223800	chr1A	94.479	3333	142	14	712	4010	391842266	391845590	0.000000e+00	5097.0
14	TraesCS1D01G223800	chr1A	94.940	2648	119	7	825	3472	391694081	391696713	0.000000e+00	4133.0
15	TraesCS1D01G223800	chr1A	94.864	2648	123	6	825	3472	391791567	391794201	0.000000e+00	4124.0
16	TraesCS1D01G223800	chr1A	95.771	2010	84	1	1463	3472	391761732	391763740	0.000000e+00	3240.0
17	TraesCS1D01G223800	chr1A	92.706	521	33	1	712	1227	391761209	391761729	0.000000e+00	747.0
18	TraesCS1D01G223800	chr1A	87.685	406	25	6	378	759	391791126	391791530	2.420000e-122	449.0
19	TraesCS1D01G223800	chr1A	87.286	409	24	6	378	759	391733200	391733607	4.040000e-120	442.0
20	TraesCS1D01G223800	chr1A	87.042	409	25	6	378	759	391693637	391694044	1.880000e-118	436.0
21	TraesCS1D01G223800	chr1A	82.143	224	27	11	4187	4403	391845674	391845891	3.500000e-41	180.0
22	TraesCS1D01G223800	chr1A	82.639	144	11	4	4274	4403	391737140	391737283	1.000000e-21	115.0
23	TraesCS1D01G223800	chr1A	82.639	144	11	4	4274	4403	391827332	391827475	1.000000e-21	115.0
24	TraesCS1D01G223800	chr1A	95.238	63	3	0	332	394	391682106	391682168	2.800000e-17	100.0
25	TraesCS1D01G223800	chr1A	95.238	63	3	0	332	394	391706393	391706455	2.800000e-17	100.0
26	TraesCS1D01G223800	chr1A	95.238	63	3	0	332	394	391767209	391767271	2.800000e-17	100.0
27	TraesCS1D01G223800	chr1A	95.238	63	3	0	332	394	391799408	391799470	2.800000e-17	100.0
28	TraesCS1D01G223800	chr1A	92.157	51	4	0	3812	3862	344186649	344186699	6.110000e-09	73.1
29	TraesCS1D01G223800	chr1A	87.931	58	7	0	3808	3865	400957640	400957583	7.900000e-08	69.4
30	TraesCS1D01G223800	chrUn	87.469	407	25	6	378	759	920517	920112	3.120000e-121	446.0
31	TraesCS1D01G223800	chrUn	82.639	144	11	4	4274	4403	916616	916473	1.000000e-21	115.0
32	TraesCS1D01G223800	chr4A	97.500	80	2	0	4135	4214	626981572	626981493	2.140000e-28	137.0
33	TraesCS1D01G223800	chr3D	94.872	78	4	0	4137	4214	565374338	565374415	5.980000e-24	122.0
34	TraesCS1D01G223800	chr3A	93.827	81	5	0	4137	4217	434000972	434000892	5.980000e-24	122.0
35	TraesCS1D01G223800	chr7D	94.805	77	3	1	4138	4214	119166019	119165944	7.740000e-23	119.0
36	TraesCS1D01G223800	chr7D	93.590	78	5	0	4137	4214	195654108	195654031	2.780000e-22	117.0
37	TraesCS1D01G223800	chr7D	93.671	79	4	1	4137	4214	204247195	204247273	2.780000e-22	117.0
38	TraesCS1D01G223800	chr5A	92.683	82	4	2	4137	4218	613017734	613017655	2.780000e-22	117.0
39	TraesCS1D01G223800	chr3B	92.771	83	3	2	4135	4214	672774659	672774741	2.780000e-22	117.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G223800	chr1D	311684707	311689109	4402	False	8131.000000	8131	100.000000	1	4403	1	chr1D.!!$F1	4402
1	TraesCS1D01G223800	chr1D	345376700	345379907	3207	True	5064.000000	5064	95.104000	475	3698	1	chr1D.!!$R1	3223
2	TraesCS1D01G223800	chr1B	421492990	421497254	4264	False	2296.000000	4322	88.108500	352	3731	2	chr1B.!!$F3	3379
3	TraesCS1D01G223800	chr1B	421440306	421441706	1400	False	1917.000000	1917	91.199000	496	1933	1	chr1B.!!$F1	1437
4	TraesCS1D01G223800	chr1B	421528015	421538358	10343	False	1891.666667	4874	88.503667	352	4403	3	chr1B.!!$F4	4051
5	TraesCS1D01G223800	chr1B	421421560	421427207	5647	False	1875.000000	5201	88.487333	1	3415	3	chr1B.!!$F2	3414
6	TraesCS1D01G223800	chr1A	391842266	391845891	3625	False	2638.500000	5097	88.311000	712	4403	2	chr1A.!!$F10	3691
7	TraesCS1D01G223800	chr1A	391675170	391682168	6998	False	2605.000000	5110	94.265500	1	3472	2	chr1A.!!$F5	3471
8	TraesCS1D01G223800	chr1A	391791126	391794201	3075	False	2286.500000	4124	91.274500	378	3472	2	chr1A.!!$F9	3094
9	TraesCS1D01G223800	chr1A	391693637	391696713	3076	False	2284.500000	4133	90.991000	378	3472	2	chr1A.!!$F6	3094
10	TraesCS1D01G223800	chr1A	391761209	391767271	6062	False	1362.333333	3240	94.571667	332	3472	3	chr1A.!!$F8	3140
11	TraesCS1D01G223800	chr1A	391733200	391737283	4083	False	278.500000	442	84.962500	378	4403	2	chr1A.!!$F7	4025
12	TraesCS1D01G223800	chrUn	916473	920517	4044	True	280.500000	446	85.054000	378	4403	2	chrUn.!!$R1	4025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
652	718	0.317160	AATCCGTGTCTCGCTGTCAA	59.683	50.0	0.00	0.0	38.35	3.18	F
1218	4217	0.250467	ACACGGTCTGCATTCTGCTT	60.250	50.0	0.34	0.0	45.31	3.91	F
2598	5598	0.395586	TGGCCAAGGCGATTGCTAAT	60.396	50.0	0.61	0.0	43.06	1.73	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2598	5598	1.055849	TGAAGTTAGCCTGGCACTCA	58.944	50.0	22.65	12.11	0.00	3.41	R
2805	5805	0.179089	CCATCTCGGTGAGAAGCTGG	60.179	60.0	0.00	0.96	42.27	4.85	R
3626	6965	0.875059	GCTAATACCCTTGATGCGGC	59.125	55.0	0.00	0.00	0.00	6.53	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	8.036575	ACAAACAAATGCATATTACAGCAGATT	58.963	29.630	0.00	0.00	44.94	2.40
49	50	6.072728	AGCAGATTATCAACGCAAAACACTAA	60.073	34.615	0.00	0.00	0.00	2.24
62	63	5.915196	GCAAAACACTAAGAACTGCCTAAAG	59.085	40.000	0.00	0.00	0.00	1.85
65	66	4.319177	ACACTAAGAACTGCCTAAAGCTG	58.681	43.478	0.00	0.00	44.23	4.24
149	151	9.622004	CATATTGGATATTTGCAAAGCTTAGAG	57.378	33.333	18.19	0.00	36.71	2.43
174	177	2.047274	CCCTCTCTTTTCGCCGCA	60.047	61.111	0.00	0.00	0.00	5.69
188	191	2.735772	CCGCATCCTGCTACCCACT	61.736	63.158	0.00	0.00	42.25	4.00
204	207	2.296471	CCCACTCATCACCTATACCGAC	59.704	54.545	0.00	0.00	0.00	4.79
218	221	2.543802	CCGACGCTAGATCGAGGCA	61.544	63.158	16.04	0.00	42.25	4.75
219	222	1.369448	CGACGCTAGATCGAGGCAC	60.369	63.158	10.44	0.00	42.25	5.01
237	243	1.153549	CCCGCTTCTCTTTCTCCCG	60.154	63.158	0.00	0.00	0.00	5.14
245	251	4.038642	GCTTCTCTTTCTCCCGAGTGATAT	59.961	45.833	0.00	0.00	0.00	1.63
250	256	4.956700	TCTTTCTCCCGAGTGATATGAACT	59.043	41.667	0.00	0.00	0.00	3.01
282	288	2.902484	CGAGCGCAAACAAACAAGATAC	59.098	45.455	11.47	0.00	0.00	2.24
300	306	5.094387	AGATACTCAAGAGAACAGGGGAAA	58.906	41.667	3.73	0.00	0.00	3.13
334	340	2.241176	TGGGTTTCAGATAGCCCGAATT	59.759	45.455	6.64	0.00	43.89	2.17
342	348	3.675225	CAGATAGCCCGAATTATGTCACG	59.325	47.826	0.00	0.00	0.00	4.35
343	349	2.519377	TAGCCCGAATTATGTCACGG	57.481	50.000	0.00	0.00	44.16	4.94
430	453	7.951347	ATACTTGAAGAAAAAGATGATGCCT	57.049	32.000	0.00	0.00	0.00	4.75
439	462	0.395686	AGATGATGCCTGATCCACGG	59.604	55.000	0.00	0.00	0.00	4.94
518	580	3.120854	CGAGCAAGCTTCAGTTAACTGTC	60.121	47.826	29.83	20.78	44.12	3.51
581	643	1.811266	CCGTTCGCTGATCTGGTGG	60.811	63.158	1.46	0.00	0.00	4.61
608	670	0.742505	TCGTAGCCGTCCATCGAATT	59.257	50.000	0.00	0.00	42.86	2.17
634	700	0.816018	TTCCTGCGCCGTTTCTTCAA	60.816	50.000	4.18	0.00	0.00	2.69
651	717	0.388520	CAATCCGTGTCTCGCTGTCA	60.389	55.000	0.00	0.00	38.35	3.58
652	718	0.317160	AATCCGTGTCTCGCTGTCAA	59.683	50.000	0.00	0.00	38.35	3.18
913	3912	0.534412	ACTTCCTCCTCACATCGCAG	59.466	55.000	0.00	0.00	0.00	5.18
956	3955	3.294038	TCGTTTACCCACTTTCCCAAA	57.706	42.857	0.00	0.00	0.00	3.28
988	3987	1.990799	ATCGAATCGACTCAAACGCA	58.009	45.000	7.77	0.00	39.18	5.24
1179	4178	2.125512	GGCGACATCGTCCTGCTT	60.126	61.111	2.85	0.00	42.22	3.91
1218	4217	0.250467	ACACGGTCTGCATTCTGCTT	60.250	50.000	0.34	0.00	45.31	3.91
1230	4229	1.666011	TCTGCTTCCAGACGACACC	59.334	57.895	0.00	0.00	42.98	4.16
1398	4398	1.957186	CGCCGGAAACCTGTTCGAA	60.957	57.895	5.05	0.00	0.00	3.71
1437	4437	1.228306	CCTCGAGGCCTATCGTCCT	60.228	63.158	20.67	0.00	43.20	3.85
1974	4974	0.529378	AGGTCGAAAGGCGTATCGTT	59.471	50.000	8.90	0.00	41.80	3.85
2142	5142	2.034221	GGGCGGCTTGAGGTTCTT	59.966	61.111	9.56	0.00	0.00	2.52
2434	5434	6.012508	AGTTCCAAATGTCTCTTGGGAAGATA	60.013	38.462	1.95	0.00	43.10	1.98
2463	5463	0.476771	TGGAGGGTGTCAAAAGGGAC	59.523	55.000	0.00	0.00	38.29	4.46
2598	5598	0.395586	TGGCCAAGGCGATTGCTAAT	60.396	50.000	0.61	0.00	43.06	1.73
2805	5805	0.811616	CCGCTGATAGGGTGCTGAAC	60.812	60.000	0.00	0.00	0.00	3.18
3213	6259	1.747924	CACTTCGAGGAGAGCATGAGA	59.252	52.381	0.00	0.00	0.00	3.27
3569	6908	5.649831	ACATTTTTCTCCTATTCCAGTCTGC	59.350	40.000	0.00	0.00	0.00	4.26
3578	6917	2.281070	CCAGTCTGCGTGGCAAGT	60.281	61.111	1.69	0.00	38.41	3.16
3624	6963	5.221722	ACAATTCTCTTGTTCTCTACAGGCA	60.222	40.000	0.00	0.00	38.19	4.75
3625	6964	4.527509	TTCTCTTGTTCTCTACAGGCAG	57.472	45.455	0.00	0.00	38.19	4.85
3626	6965	2.828520	TCTCTTGTTCTCTACAGGCAGG	59.171	50.000	0.00	0.00	38.19	4.85
3627	6966	1.276421	TCTTGTTCTCTACAGGCAGGC	59.724	52.381	0.00	0.00	38.19	4.85
3705	7049	9.314501	CTTTTAAATGTACTAGTTCAGTTTCGC	57.685	33.333	18.21	0.00	38.80	4.70
3759	7153	6.154203	TGCATGATTACCTCTACTGAGAAG	57.846	41.667	0.00	0.00	42.73	2.85
3772	7166	0.833409	TGAGAAGTGCCAGAGCCTCA	60.833	55.000	0.00	0.00	38.69	3.86
3798	7192	9.349713	ACCAGAATGTTGACAAATTAGTTTAGA	57.650	29.630	0.00	0.00	0.00	2.10
3972	11002	4.776322	TGAAGCGTGGGATGGCCG	62.776	66.667	0.00	0.00	33.83	6.13
3986	11016	1.552578	TGGCCGTACTCTCAAGCTTA	58.447	50.000	0.00	0.00	0.00	3.09
3988	11018	2.269172	GGCCGTACTCTCAAGCTTAAC	58.731	52.381	0.00	0.00	0.00	2.01
4094	11128	0.034767	TGCCCTGAAAGATCTGGCAG	60.035	55.000	17.38	16.08	44.13	4.85
4397	11481	7.693952	TCTTTGATTGTGTAGTTGTTGTTCTC	58.306	34.615	0.00	0.00	0.00	2.87

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	4.475944	AGTGTTTTGCGTTGATAATCTGC	58.524	39.130	0.00	0.00	0.00	4.26
31	32	6.655062	CAGTTCTTAGTGTTTTGCGTTGATA	58.345	36.000	0.00	0.00	0.00	2.15
49	50	1.339535	GCTCCAGCTTTAGGCAGTTCT	60.340	52.381	0.00	0.00	44.79	3.01
62	63	1.174712	TCCTGTTTGCAAGCTCCAGC	61.175	55.000	14.67	0.00	42.49	4.85
65	66	2.888834	TTTTCCTGTTTGCAAGCTCC	57.111	45.000	14.67	0.00	0.00	4.70
149	151	1.814793	GAAAAGAGAGGGGAGTGTGC	58.185	55.000	0.00	0.00	0.00	4.57
174	177	1.765314	GTGATGAGTGGGTAGCAGGAT	59.235	52.381	0.00	0.00	0.00	3.24
188	191	1.977056	AGCGTCGGTATAGGTGATGA	58.023	50.000	0.00	0.00	0.00	2.92
204	207	2.336809	GGGTGCCTCGATCTAGCG	59.663	66.667	0.00	0.00	0.00	4.26
218	221	1.889530	CGGGAGAAAGAGAAGCGGGT	61.890	60.000	0.00	0.00	0.00	5.28
219	222	1.153549	CGGGAGAAAGAGAAGCGGG	60.154	63.158	0.00	0.00	0.00	6.13
237	243	6.636447	CGAGTTGATCTCAGTTCATATCACTC	59.364	42.308	5.65	5.65	42.88	3.51
245	251	2.414691	CGCTCGAGTTGATCTCAGTTCA	60.415	50.000	15.13	0.00	42.88	3.18
250	256	0.243636	TTGCGCTCGAGTTGATCTCA	59.756	50.000	15.13	0.00	42.88	3.27
282	288	3.071602	TCTGTTTCCCCTGTTCTCTTGAG	59.928	47.826	0.00	0.00	0.00	3.02
300	306	2.711009	TGAAACCCAATCACTCCTCTGT	59.289	45.455	0.00	0.00	0.00	3.41
334	340	6.330278	CAAGAGAACTTGTATCCGTGACATA	58.670	40.000	0.00	0.00	45.73	2.29
439	462	1.008767	ATAAGTAGCTCGCGCGTCC	60.009	57.895	30.98	20.95	42.32	4.79
442	465	2.016704	CCCATAAGTAGCTCGCGCG	61.017	63.158	26.76	26.76	42.32	6.86
518	580	4.024725	TCTGTTTACCGTCCGACAAATTTG	60.025	41.667	16.67	16.67	0.00	2.32
570	632	2.295885	GATTGAAGCCCACCAGATCAG	58.704	52.381	0.00	0.00	0.00	2.90
608	670	2.048222	CGGCGCAGGAAGAGAACA	60.048	61.111	10.83	0.00	0.00	3.18
634	700	0.317160	TTTGACAGCGAGACACGGAT	59.683	50.000	0.00	0.00	42.83	4.18
651	717	9.354673	TGAACCTGAAGATAACTGAAGAAATTT	57.645	29.630	0.00	0.00	0.00	1.82
652	718	8.924511	TGAACCTGAAGATAACTGAAGAAATT	57.075	30.769	0.00	0.00	0.00	1.82
859	3858	3.817647	CTGACCCTTTATAGCATCTTGCC	59.182	47.826	0.00	0.00	46.52	4.52
913	3912	2.586357	GGATCCTTGGTCTCGCGC	60.586	66.667	3.84	0.00	0.00	6.86
979	3978	1.635663	GGATGGGACGTGCGTTTGAG	61.636	60.000	0.00	0.00	0.00	3.02
980	3979	1.669760	GGATGGGACGTGCGTTTGA	60.670	57.895	0.00	0.00	0.00	2.69
1029	4028	0.896940	TCGCCGTGGAGTAGTCCTTT	60.897	55.000	17.62	0.00	44.30	3.11
1179	4178	0.035439	CCTTCCGCTTCTTGCCCTTA	60.035	55.000	0.00	0.00	38.78	2.69
1218	4217	2.596338	TCGCAGGTGTCGTCTGGA	60.596	61.111	0.00	0.00	33.16	3.86
1230	4229	0.951040	GGACCTTGGTCTTGTCGCAG	60.951	60.000	17.99	0.00	0.00	5.18
1341	4340	1.973281	GACGGGGAGTACGTGGACA	60.973	63.158	0.00	0.00	45.68	4.02
1398	4398	0.713579	AGTAGGGTCTCAGGAAGGCT	59.286	55.000	0.00	0.00	0.00	4.58
1723	4723	1.452651	CAGGTGGCCCATACAGCAG	60.453	63.158	0.00	0.00	38.72	4.24
2142	5142	3.885901	TCATGTTTTTGGTGTGAATCCGA	59.114	39.130	0.00	0.00	0.00	4.55
2434	5434	2.610859	ACCCTCCAGACCGCCAAT	60.611	61.111	0.00	0.00	0.00	3.16
2463	5463	2.997315	TGGACGGTCTCCTGCAGG	60.997	66.667	27.87	27.87	40.26	4.85
2565	5565	1.832167	GGCCAACAAGGTCTTGCCA	60.832	57.895	10.31	0.00	44.03	4.92
2598	5598	1.055849	TGAAGTTAGCCTGGCACTCA	58.944	50.000	22.65	12.11	0.00	3.41
2805	5805	0.179089	CCATCTCGGTGAGAAGCTGG	60.179	60.000	0.00	0.96	42.27	4.85
3213	6259	1.521457	CACACTCCGGCGTGCATAT	60.521	57.895	24.13	1.72	38.45	1.78
3237	6283	4.057730	CTGGTATTTGCGAATATCAGCG	57.942	45.455	26.74	11.53	45.20	5.18
3300	6346	0.108804	GATCAGCGAACCGGAACTCA	60.109	55.000	9.46	0.00	0.00	3.41
3324	6370	2.358737	GCGGTAGTGCCTGTTGCT	60.359	61.111	0.00	0.00	42.00	3.91
3342	6388	1.645034	ATGCGAAAGGATCTGTCACG	58.355	50.000	0.00	0.00	37.81	4.35
3551	6890	2.166459	CACGCAGACTGGAATAGGAGAA	59.834	50.000	4.26	0.00	0.00	2.87
3569	6908	4.094887	GCCAATGGATATATACTTGCCACG	59.905	45.833	2.05	0.00	0.00	4.94
3578	6917	5.788014	TGTACCACAGGCCAATGGATATATA	59.212	40.000	27.41	9.68	39.46	0.86
3624	6963	1.072331	CTAATACCCTTGATGCGGCCT	59.928	52.381	0.00	0.00	0.00	5.19
3625	6964	1.523758	CTAATACCCTTGATGCGGCC	58.476	55.000	0.00	0.00	0.00	6.13
3626	6965	0.875059	GCTAATACCCTTGATGCGGC	59.125	55.000	0.00	0.00	0.00	6.53
3627	6966	2.254546	TGCTAATACCCTTGATGCGG	57.745	50.000	0.00	0.00	0.00	5.69
3705	7049	8.943909	ACAGAAGGTTTATTAAGATACCGAAG	57.056	34.615	4.37	0.39	35.80	3.79
3734	7078	4.038522	TCTCAGTAGAGGTAATCATGCAGC	59.961	45.833	0.00	0.00	42.34	5.25
3759	7153	2.046507	CTGGTGAGGCTCTGGCAC	60.047	66.667	16.72	5.77	40.87	5.01
3772	7166	9.349713	TCTAAACTAATTTGTCAACATTCTGGT	57.650	29.630	0.00	0.00	0.00	4.00
3798	7192	1.203994	GTGCATTGCAGAGCCTTTCAT	59.796	47.619	12.53	0.00	40.08	2.57
3986	11016	5.221641	GCTGGGGTAAAATTCCTTTCAAGTT	60.222	40.000	0.00	0.00	0.00	2.66
3988	11018	4.528206	AGCTGGGGTAAAATTCCTTTCAAG	59.472	41.667	0.00	0.00	0.00	3.02
3992	11024	3.578282	CACAGCTGGGGTAAAATTCCTTT	59.422	43.478	19.93	0.00	0.00	3.11
4047	11079	2.024464	ACATTGGCCTGGTTAATGCCTA	60.024	45.455	18.58	2.08	45.56	3.93
4048	11080	1.273211	ACATTGGCCTGGTTAATGCCT	60.273	47.619	18.58	4.56	45.56	4.75
4049	11081	1.136891	GACATTGGCCTGGTTAATGCC	59.863	52.381	18.58	9.20	45.56	4.40
4094	11128	4.752146	AGTAAACTCCGCTGTTGGTATAC	58.248	43.478	0.00	0.00	0.00	1.47

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.