Multiple sequence alignment - TraesCS1D01G223800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G223800 chr1D 100.000 4403 0 0 1 4403 311684707 311689109 0.000000e+00 8131.0
1 TraesCS1D01G223800 chr1D 95.104 3227 136 12 475 3698 345379907 345376700 0.000000e+00 5064.0
2 TraesCS1D01G223800 chr1D 89.091 55 6 0 3808 3862 321708929 321708983 7.900000e-08 69.4
3 TraesCS1D01G223800 chr1B 94.231 3432 155 16 1 3415 421421560 421424965 0.000000e+00 5201.0
4 TraesCS1D01G223800 chr1B 94.698 3150 148 10 825 3966 421531372 421534510 0.000000e+00 4874.0
5 TraesCS1D01G223800 chr1B 93.513 2929 153 20 825 3731 421494341 421497254 0.000000e+00 4322.0
6 TraesCS1D01G223800 chr1B 91.199 1443 80 18 496 1933 421440306 421441706 0.000000e+00 1917.0
7 TraesCS1D01G223800 chr1B 88.535 471 17 8 3962 4403 421537896 421538358 1.800000e-148 536.0
8 TraesCS1D01G223800 chr1B 82.595 316 45 6 352 666 421426901 421427207 2.020000e-68 270.0
9 TraesCS1D01G223800 chr1B 82.704 318 41 11 352 666 421492990 421493296 2.020000e-68 270.0
10 TraesCS1D01G223800 chr1B 82.278 316 46 6 352 666 421528015 421528321 9.390000e-67 265.0
11 TraesCS1D01G223800 chr1B 88.636 132 8 2 4 129 421426747 421426877 2.120000e-33 154.0
12 TraesCS1D01G223800 chr1A 93.293 3489 195 20 1 3472 391675170 391678636 0.000000e+00 5110.0
13 TraesCS1D01G223800 chr1A 94.479 3333 142 14 712 4010 391842266 391845590 0.000000e+00 5097.0
14 TraesCS1D01G223800 chr1A 94.940 2648 119 7 825 3472 391694081 391696713 0.000000e+00 4133.0
15 TraesCS1D01G223800 chr1A 94.864 2648 123 6 825 3472 391791567 391794201 0.000000e+00 4124.0
16 TraesCS1D01G223800 chr1A 95.771 2010 84 1 1463 3472 391761732 391763740 0.000000e+00 3240.0
17 TraesCS1D01G223800 chr1A 92.706 521 33 1 712 1227 391761209 391761729 0.000000e+00 747.0
18 TraesCS1D01G223800 chr1A 87.685 406 25 6 378 759 391791126 391791530 2.420000e-122 449.0
19 TraesCS1D01G223800 chr1A 87.286 409 24 6 378 759 391733200 391733607 4.040000e-120 442.0
20 TraesCS1D01G223800 chr1A 87.042 409 25 6 378 759 391693637 391694044 1.880000e-118 436.0
21 TraesCS1D01G223800 chr1A 82.143 224 27 11 4187 4403 391845674 391845891 3.500000e-41 180.0
22 TraesCS1D01G223800 chr1A 82.639 144 11 4 4274 4403 391737140 391737283 1.000000e-21 115.0
23 TraesCS1D01G223800 chr1A 82.639 144 11 4 4274 4403 391827332 391827475 1.000000e-21 115.0
24 TraesCS1D01G223800 chr1A 95.238 63 3 0 332 394 391682106 391682168 2.800000e-17 100.0
25 TraesCS1D01G223800 chr1A 95.238 63 3 0 332 394 391706393 391706455 2.800000e-17 100.0
26 TraesCS1D01G223800 chr1A 95.238 63 3 0 332 394 391767209 391767271 2.800000e-17 100.0
27 TraesCS1D01G223800 chr1A 95.238 63 3 0 332 394 391799408 391799470 2.800000e-17 100.0
28 TraesCS1D01G223800 chr1A 92.157 51 4 0 3812 3862 344186649 344186699 6.110000e-09 73.1
29 TraesCS1D01G223800 chr1A 87.931 58 7 0 3808 3865 400957640 400957583 7.900000e-08 69.4
30 TraesCS1D01G223800 chrUn 87.469 407 25 6 378 759 920517 920112 3.120000e-121 446.0
31 TraesCS1D01G223800 chrUn 82.639 144 11 4 4274 4403 916616 916473 1.000000e-21 115.0
32 TraesCS1D01G223800 chr4A 97.500 80 2 0 4135 4214 626981572 626981493 2.140000e-28 137.0
33 TraesCS1D01G223800 chr3D 94.872 78 4 0 4137 4214 565374338 565374415 5.980000e-24 122.0
34 TraesCS1D01G223800 chr3A 93.827 81 5 0 4137 4217 434000972 434000892 5.980000e-24 122.0
35 TraesCS1D01G223800 chr7D 94.805 77 3 1 4138 4214 119166019 119165944 7.740000e-23 119.0
36 TraesCS1D01G223800 chr7D 93.590 78 5 0 4137 4214 195654108 195654031 2.780000e-22 117.0
37 TraesCS1D01G223800 chr7D 93.671 79 4 1 4137 4214 204247195 204247273 2.780000e-22 117.0
38 TraesCS1D01G223800 chr5A 92.683 82 4 2 4137 4218 613017734 613017655 2.780000e-22 117.0
39 TraesCS1D01G223800 chr3B 92.771 83 3 2 4135 4214 672774659 672774741 2.780000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G223800 chr1D 311684707 311689109 4402 False 8131.000000 8131 100.000000 1 4403 1 chr1D.!!$F1 4402
1 TraesCS1D01G223800 chr1D 345376700 345379907 3207 True 5064.000000 5064 95.104000 475 3698 1 chr1D.!!$R1 3223
2 TraesCS1D01G223800 chr1B 421492990 421497254 4264 False 2296.000000 4322 88.108500 352 3731 2 chr1B.!!$F3 3379
3 TraesCS1D01G223800 chr1B 421440306 421441706 1400 False 1917.000000 1917 91.199000 496 1933 1 chr1B.!!$F1 1437
4 TraesCS1D01G223800 chr1B 421528015 421538358 10343 False 1891.666667 4874 88.503667 352 4403 3 chr1B.!!$F4 4051
5 TraesCS1D01G223800 chr1B 421421560 421427207 5647 False 1875.000000 5201 88.487333 1 3415 3 chr1B.!!$F2 3414
6 TraesCS1D01G223800 chr1A 391842266 391845891 3625 False 2638.500000 5097 88.311000 712 4403 2 chr1A.!!$F10 3691
7 TraesCS1D01G223800 chr1A 391675170 391682168 6998 False 2605.000000 5110 94.265500 1 3472 2 chr1A.!!$F5 3471
8 TraesCS1D01G223800 chr1A 391791126 391794201 3075 False 2286.500000 4124 91.274500 378 3472 2 chr1A.!!$F9 3094
9 TraesCS1D01G223800 chr1A 391693637 391696713 3076 False 2284.500000 4133 90.991000 378 3472 2 chr1A.!!$F6 3094
10 TraesCS1D01G223800 chr1A 391761209 391767271 6062 False 1362.333333 3240 94.571667 332 3472 3 chr1A.!!$F8 3140
11 TraesCS1D01G223800 chr1A 391733200 391737283 4083 False 278.500000 442 84.962500 378 4403 2 chr1A.!!$F7 4025
12 TraesCS1D01G223800 chrUn 916473 920517 4044 True 280.500000 446 85.054000 378 4403 2 chrUn.!!$R1 4025

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
652 718 0.317160 AATCCGTGTCTCGCTGTCAA 59.683 50.0 0.00 0.0 38.35 3.18 F
1218 4217 0.250467 ACACGGTCTGCATTCTGCTT 60.250 50.0 0.34 0.0 45.31 3.91 F
2598 5598 0.395586 TGGCCAAGGCGATTGCTAAT 60.396 50.0 0.61 0.0 43.06 1.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2598 5598 1.055849 TGAAGTTAGCCTGGCACTCA 58.944 50.0 22.65 12.11 0.00 3.41 R
2805 5805 0.179089 CCATCTCGGTGAGAAGCTGG 60.179 60.0 0.00 0.96 42.27 4.85 R
3626 6965 0.875059 GCTAATACCCTTGATGCGGC 59.125 55.0 0.00 0.00 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.036575 ACAAACAAATGCATATTACAGCAGATT 58.963 29.630 0.00 0.00 44.94 2.40
49 50 6.072728 AGCAGATTATCAACGCAAAACACTAA 60.073 34.615 0.00 0.00 0.00 2.24
62 63 5.915196 GCAAAACACTAAGAACTGCCTAAAG 59.085 40.000 0.00 0.00 0.00 1.85
65 66 4.319177 ACACTAAGAACTGCCTAAAGCTG 58.681 43.478 0.00 0.00 44.23 4.24
149 151 9.622004 CATATTGGATATTTGCAAAGCTTAGAG 57.378 33.333 18.19 0.00 36.71 2.43
174 177 2.047274 CCCTCTCTTTTCGCCGCA 60.047 61.111 0.00 0.00 0.00 5.69
188 191 2.735772 CCGCATCCTGCTACCCACT 61.736 63.158 0.00 0.00 42.25 4.00
204 207 2.296471 CCCACTCATCACCTATACCGAC 59.704 54.545 0.00 0.00 0.00 4.79
218 221 2.543802 CCGACGCTAGATCGAGGCA 61.544 63.158 16.04 0.00 42.25 4.75
219 222 1.369448 CGACGCTAGATCGAGGCAC 60.369 63.158 10.44 0.00 42.25 5.01
237 243 1.153549 CCCGCTTCTCTTTCTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
245 251 4.038642 GCTTCTCTTTCTCCCGAGTGATAT 59.961 45.833 0.00 0.00 0.00 1.63
250 256 4.956700 TCTTTCTCCCGAGTGATATGAACT 59.043 41.667 0.00 0.00 0.00 3.01
282 288 2.902484 CGAGCGCAAACAAACAAGATAC 59.098 45.455 11.47 0.00 0.00 2.24
300 306 5.094387 AGATACTCAAGAGAACAGGGGAAA 58.906 41.667 3.73 0.00 0.00 3.13
334 340 2.241176 TGGGTTTCAGATAGCCCGAATT 59.759 45.455 6.64 0.00 43.89 2.17
342 348 3.675225 CAGATAGCCCGAATTATGTCACG 59.325 47.826 0.00 0.00 0.00 4.35
343 349 2.519377 TAGCCCGAATTATGTCACGG 57.481 50.000 0.00 0.00 44.16 4.94
430 453 7.951347 ATACTTGAAGAAAAAGATGATGCCT 57.049 32.000 0.00 0.00 0.00 4.75
439 462 0.395686 AGATGATGCCTGATCCACGG 59.604 55.000 0.00 0.00 0.00 4.94
518 580 3.120854 CGAGCAAGCTTCAGTTAACTGTC 60.121 47.826 29.83 20.78 44.12 3.51
581 643 1.811266 CCGTTCGCTGATCTGGTGG 60.811 63.158 1.46 0.00 0.00 4.61
608 670 0.742505 TCGTAGCCGTCCATCGAATT 59.257 50.000 0.00 0.00 42.86 2.17
634 700 0.816018 TTCCTGCGCCGTTTCTTCAA 60.816 50.000 4.18 0.00 0.00 2.69
651 717 0.388520 CAATCCGTGTCTCGCTGTCA 60.389 55.000 0.00 0.00 38.35 3.58
652 718 0.317160 AATCCGTGTCTCGCTGTCAA 59.683 50.000 0.00 0.00 38.35 3.18
913 3912 0.534412 ACTTCCTCCTCACATCGCAG 59.466 55.000 0.00 0.00 0.00 5.18
956 3955 3.294038 TCGTTTACCCACTTTCCCAAA 57.706 42.857 0.00 0.00 0.00 3.28
988 3987 1.990799 ATCGAATCGACTCAAACGCA 58.009 45.000 7.77 0.00 39.18 5.24
1179 4178 2.125512 GGCGACATCGTCCTGCTT 60.126 61.111 2.85 0.00 42.22 3.91
1218 4217 0.250467 ACACGGTCTGCATTCTGCTT 60.250 50.000 0.34 0.00 45.31 3.91
1230 4229 1.666011 TCTGCTTCCAGACGACACC 59.334 57.895 0.00 0.00 42.98 4.16
1398 4398 1.957186 CGCCGGAAACCTGTTCGAA 60.957 57.895 5.05 0.00 0.00 3.71
1437 4437 1.228306 CCTCGAGGCCTATCGTCCT 60.228 63.158 20.67 0.00 43.20 3.85
1974 4974 0.529378 AGGTCGAAAGGCGTATCGTT 59.471 50.000 8.90 0.00 41.80 3.85
2142 5142 2.034221 GGGCGGCTTGAGGTTCTT 59.966 61.111 9.56 0.00 0.00 2.52
2434 5434 6.012508 AGTTCCAAATGTCTCTTGGGAAGATA 60.013 38.462 1.95 0.00 43.10 1.98
2463 5463 0.476771 TGGAGGGTGTCAAAAGGGAC 59.523 55.000 0.00 0.00 38.29 4.46
2598 5598 0.395586 TGGCCAAGGCGATTGCTAAT 60.396 50.000 0.61 0.00 43.06 1.73
2805 5805 0.811616 CCGCTGATAGGGTGCTGAAC 60.812 60.000 0.00 0.00 0.00 3.18
3213 6259 1.747924 CACTTCGAGGAGAGCATGAGA 59.252 52.381 0.00 0.00 0.00 3.27
3569 6908 5.649831 ACATTTTTCTCCTATTCCAGTCTGC 59.350 40.000 0.00 0.00 0.00 4.26
3578 6917 2.281070 CCAGTCTGCGTGGCAAGT 60.281 61.111 1.69 0.00 38.41 3.16
3624 6963 5.221722 ACAATTCTCTTGTTCTCTACAGGCA 60.222 40.000 0.00 0.00 38.19 4.75
3625 6964 4.527509 TTCTCTTGTTCTCTACAGGCAG 57.472 45.455 0.00 0.00 38.19 4.85
3626 6965 2.828520 TCTCTTGTTCTCTACAGGCAGG 59.171 50.000 0.00 0.00 38.19 4.85
3627 6966 1.276421 TCTTGTTCTCTACAGGCAGGC 59.724 52.381 0.00 0.00 38.19 4.85
3705 7049 9.314501 CTTTTAAATGTACTAGTTCAGTTTCGC 57.685 33.333 18.21 0.00 38.80 4.70
3759 7153 6.154203 TGCATGATTACCTCTACTGAGAAG 57.846 41.667 0.00 0.00 42.73 2.85
3772 7166 0.833409 TGAGAAGTGCCAGAGCCTCA 60.833 55.000 0.00 0.00 38.69 3.86
3798 7192 9.349713 ACCAGAATGTTGACAAATTAGTTTAGA 57.650 29.630 0.00 0.00 0.00 2.10
3972 11002 4.776322 TGAAGCGTGGGATGGCCG 62.776 66.667 0.00 0.00 33.83 6.13
3986 11016 1.552578 TGGCCGTACTCTCAAGCTTA 58.447 50.000 0.00 0.00 0.00 3.09
3988 11018 2.269172 GGCCGTACTCTCAAGCTTAAC 58.731 52.381 0.00 0.00 0.00 2.01
4094 11128 0.034767 TGCCCTGAAAGATCTGGCAG 60.035 55.000 17.38 16.08 44.13 4.85
4397 11481 7.693952 TCTTTGATTGTGTAGTTGTTGTTCTC 58.306 34.615 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.475944 AGTGTTTTGCGTTGATAATCTGC 58.524 39.130 0.00 0.00 0.00 4.26
31 32 6.655062 CAGTTCTTAGTGTTTTGCGTTGATA 58.345 36.000 0.00 0.00 0.00 2.15
49 50 1.339535 GCTCCAGCTTTAGGCAGTTCT 60.340 52.381 0.00 0.00 44.79 3.01
62 63 1.174712 TCCTGTTTGCAAGCTCCAGC 61.175 55.000 14.67 0.00 42.49 4.85
65 66 2.888834 TTTTCCTGTTTGCAAGCTCC 57.111 45.000 14.67 0.00 0.00 4.70
149 151 1.814793 GAAAAGAGAGGGGAGTGTGC 58.185 55.000 0.00 0.00 0.00 4.57
174 177 1.765314 GTGATGAGTGGGTAGCAGGAT 59.235 52.381 0.00 0.00 0.00 3.24
188 191 1.977056 AGCGTCGGTATAGGTGATGA 58.023 50.000 0.00 0.00 0.00 2.92
204 207 2.336809 GGGTGCCTCGATCTAGCG 59.663 66.667 0.00 0.00 0.00 4.26
218 221 1.889530 CGGGAGAAAGAGAAGCGGGT 61.890 60.000 0.00 0.00 0.00 5.28
219 222 1.153549 CGGGAGAAAGAGAAGCGGG 60.154 63.158 0.00 0.00 0.00 6.13
237 243 6.636447 CGAGTTGATCTCAGTTCATATCACTC 59.364 42.308 5.65 5.65 42.88 3.51
245 251 2.414691 CGCTCGAGTTGATCTCAGTTCA 60.415 50.000 15.13 0.00 42.88 3.18
250 256 0.243636 TTGCGCTCGAGTTGATCTCA 59.756 50.000 15.13 0.00 42.88 3.27
282 288 3.071602 TCTGTTTCCCCTGTTCTCTTGAG 59.928 47.826 0.00 0.00 0.00 3.02
300 306 2.711009 TGAAACCCAATCACTCCTCTGT 59.289 45.455 0.00 0.00 0.00 3.41
334 340 6.330278 CAAGAGAACTTGTATCCGTGACATA 58.670 40.000 0.00 0.00 45.73 2.29
439 462 1.008767 ATAAGTAGCTCGCGCGTCC 60.009 57.895 30.98 20.95 42.32 4.79
442 465 2.016704 CCCATAAGTAGCTCGCGCG 61.017 63.158 26.76 26.76 42.32 6.86
518 580 4.024725 TCTGTTTACCGTCCGACAAATTTG 60.025 41.667 16.67 16.67 0.00 2.32
570 632 2.295885 GATTGAAGCCCACCAGATCAG 58.704 52.381 0.00 0.00 0.00 2.90
608 670 2.048222 CGGCGCAGGAAGAGAACA 60.048 61.111 10.83 0.00 0.00 3.18
634 700 0.317160 TTTGACAGCGAGACACGGAT 59.683 50.000 0.00 0.00 42.83 4.18
651 717 9.354673 TGAACCTGAAGATAACTGAAGAAATTT 57.645 29.630 0.00 0.00 0.00 1.82
652 718 8.924511 TGAACCTGAAGATAACTGAAGAAATT 57.075 30.769 0.00 0.00 0.00 1.82
859 3858 3.817647 CTGACCCTTTATAGCATCTTGCC 59.182 47.826 0.00 0.00 46.52 4.52
913 3912 2.586357 GGATCCTTGGTCTCGCGC 60.586 66.667 3.84 0.00 0.00 6.86
979 3978 1.635663 GGATGGGACGTGCGTTTGAG 61.636 60.000 0.00 0.00 0.00 3.02
980 3979 1.669760 GGATGGGACGTGCGTTTGA 60.670 57.895 0.00 0.00 0.00 2.69
1029 4028 0.896940 TCGCCGTGGAGTAGTCCTTT 60.897 55.000 17.62 0.00 44.30 3.11
1179 4178 0.035439 CCTTCCGCTTCTTGCCCTTA 60.035 55.000 0.00 0.00 38.78 2.69
1218 4217 2.596338 TCGCAGGTGTCGTCTGGA 60.596 61.111 0.00 0.00 33.16 3.86
1230 4229 0.951040 GGACCTTGGTCTTGTCGCAG 60.951 60.000 17.99 0.00 0.00 5.18
1341 4340 1.973281 GACGGGGAGTACGTGGACA 60.973 63.158 0.00 0.00 45.68 4.02
1398 4398 0.713579 AGTAGGGTCTCAGGAAGGCT 59.286 55.000 0.00 0.00 0.00 4.58
1723 4723 1.452651 CAGGTGGCCCATACAGCAG 60.453 63.158 0.00 0.00 38.72 4.24
2142 5142 3.885901 TCATGTTTTTGGTGTGAATCCGA 59.114 39.130 0.00 0.00 0.00 4.55
2434 5434 2.610859 ACCCTCCAGACCGCCAAT 60.611 61.111 0.00 0.00 0.00 3.16
2463 5463 2.997315 TGGACGGTCTCCTGCAGG 60.997 66.667 27.87 27.87 40.26 4.85
2565 5565 1.832167 GGCCAACAAGGTCTTGCCA 60.832 57.895 10.31 0.00 44.03 4.92
2598 5598 1.055849 TGAAGTTAGCCTGGCACTCA 58.944 50.000 22.65 12.11 0.00 3.41
2805 5805 0.179089 CCATCTCGGTGAGAAGCTGG 60.179 60.000 0.00 0.96 42.27 4.85
3213 6259 1.521457 CACACTCCGGCGTGCATAT 60.521 57.895 24.13 1.72 38.45 1.78
3237 6283 4.057730 CTGGTATTTGCGAATATCAGCG 57.942 45.455 26.74 11.53 45.20 5.18
3300 6346 0.108804 GATCAGCGAACCGGAACTCA 60.109 55.000 9.46 0.00 0.00 3.41
3324 6370 2.358737 GCGGTAGTGCCTGTTGCT 60.359 61.111 0.00 0.00 42.00 3.91
3342 6388 1.645034 ATGCGAAAGGATCTGTCACG 58.355 50.000 0.00 0.00 37.81 4.35
3551 6890 2.166459 CACGCAGACTGGAATAGGAGAA 59.834 50.000 4.26 0.00 0.00 2.87
3569 6908 4.094887 GCCAATGGATATATACTTGCCACG 59.905 45.833 2.05 0.00 0.00 4.94
3578 6917 5.788014 TGTACCACAGGCCAATGGATATATA 59.212 40.000 27.41 9.68 39.46 0.86
3624 6963 1.072331 CTAATACCCTTGATGCGGCCT 59.928 52.381 0.00 0.00 0.00 5.19
3625 6964 1.523758 CTAATACCCTTGATGCGGCC 58.476 55.000 0.00 0.00 0.00 6.13
3626 6965 0.875059 GCTAATACCCTTGATGCGGC 59.125 55.000 0.00 0.00 0.00 6.53
3627 6966 2.254546 TGCTAATACCCTTGATGCGG 57.745 50.000 0.00 0.00 0.00 5.69
3705 7049 8.943909 ACAGAAGGTTTATTAAGATACCGAAG 57.056 34.615 4.37 0.39 35.80 3.79
3734 7078 4.038522 TCTCAGTAGAGGTAATCATGCAGC 59.961 45.833 0.00 0.00 42.34 5.25
3759 7153 2.046507 CTGGTGAGGCTCTGGCAC 60.047 66.667 16.72 5.77 40.87 5.01
3772 7166 9.349713 TCTAAACTAATTTGTCAACATTCTGGT 57.650 29.630 0.00 0.00 0.00 4.00
3798 7192 1.203994 GTGCATTGCAGAGCCTTTCAT 59.796 47.619 12.53 0.00 40.08 2.57
3986 11016 5.221641 GCTGGGGTAAAATTCCTTTCAAGTT 60.222 40.000 0.00 0.00 0.00 2.66
3988 11018 4.528206 AGCTGGGGTAAAATTCCTTTCAAG 59.472 41.667 0.00 0.00 0.00 3.02
3992 11024 3.578282 CACAGCTGGGGTAAAATTCCTTT 59.422 43.478 19.93 0.00 0.00 3.11
4047 11079 2.024464 ACATTGGCCTGGTTAATGCCTA 60.024 45.455 18.58 2.08 45.56 3.93
4048 11080 1.273211 ACATTGGCCTGGTTAATGCCT 60.273 47.619 18.58 4.56 45.56 4.75
4049 11081 1.136891 GACATTGGCCTGGTTAATGCC 59.863 52.381 18.58 9.20 45.56 4.40
4094 11128 4.752146 AGTAAACTCCGCTGTTGGTATAC 58.248 43.478 0.00 0.00 0.00 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.