Multiple sequence alignment - TraesCS1D01G223600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G223600 chr1D 100.000 4992 0 0 1 4992 311370433 311365442 0.000000e+00 9219.0
1 TraesCS1D01G223600 chr1D 93.151 219 13 2 1 218 322518381 322518164 2.240000e-83 320.0
2 TraesCS1D01G223600 chr1D 88.542 96 6 4 1836 1930 311368553 311368462 1.470000e-20 111.0
3 TraesCS1D01G223600 chr1B 92.033 2887 130 34 1474 4320 421099573 421096747 0.000000e+00 3965.0
4 TraesCS1D01G223600 chr1B 87.812 1641 122 37 1994 3606 375890835 375889245 0.000000e+00 1851.0
5 TraesCS1D01G223600 chr1B 90.013 781 53 11 473 1232 421100967 421100191 0.000000e+00 987.0
6 TraesCS1D01G223600 chr1B 88.667 150 17 0 2312 2461 375890355 375890206 3.070000e-42 183.0
7 TraesCS1D01G223600 chr1B 90.722 97 4 2 1881 1972 421099206 421099110 1.890000e-24 124.0
8 TraesCS1D01G223600 chr1B 88.235 102 7 4 4325 4423 421096790 421096691 3.160000e-22 117.0
9 TraesCS1D01G223600 chr1B 88.542 96 6 4 1836 1930 421099159 421099068 1.470000e-20 111.0
10 TraesCS1D01G223600 chr1A 93.925 2502 105 30 1836 4320 391259200 391256729 0.000000e+00 3735.0
11 TraesCS1D01G223600 chr1A 89.518 1784 110 36 237 1972 391260905 391259151 0.000000e+00 2187.0
12 TraesCS1D01G223600 chr1A 87.548 522 23 14 4512 4992 417341897 417342417 2.610000e-157 566.0
13 TraesCS1D01G223600 chr1A 93.151 219 14 1 1 218 103076496 103076714 2.240000e-83 320.0
14 TraesCS1D01G223600 chr1A 93.151 219 13 2 1 218 301360441 301360658 2.240000e-83 320.0
15 TraesCS1D01G223600 chr1A 90.580 138 8 4 1836 1972 391259242 391259109 1.430000e-40 178.0
16 TraesCS1D01G223600 chr1A 88.660 97 6 4 1881 1972 391259289 391259193 4.080000e-21 113.0
17 TraesCS1D01G223600 chr2B 88.192 2058 148 44 1574 3597 749574659 749572663 0.000000e+00 2366.0
18 TraesCS1D01G223600 chr2B 94.419 215 11 1 5 218 424546330 424546116 3.730000e-86 329.0
19 TraesCS1D01G223600 chr2B 89.333 150 16 0 2312 2461 749573766 749573617 6.600000e-44 189.0
20 TraesCS1D01G223600 chr2B 87.879 66 8 0 225 290 101408396 101408461 1.490000e-10 78.7
21 TraesCS1D01G223600 chr5D 88.068 528 21 12 4507 4992 514539552 514540079 5.570000e-164 588.0
22 TraesCS1D01G223600 chr5D 88.123 522 21 13 4512 4992 357401537 357401016 2.590000e-162 582.0
23 TraesCS1D01G223600 chr5D 93.607 219 13 1 1 218 75243487 75243705 4.820000e-85 326.0
24 TraesCS1D01G223600 chr7D 86.041 437 43 5 3528 3964 169421788 169421370 2.120000e-123 453.0
25 TraesCS1D01G223600 chr7D 80.449 624 69 15 3345 3964 164752081 164751507 1.280000e-115 427.0
26 TraesCS1D01G223600 chr7D 79.618 628 74 16 3340 3964 165118800 165119376 7.780000e-108 401.0
27 TraesCS1D01G223600 chr7D 84.055 439 45 8 3528 3960 169025304 169025723 2.800000e-107 399.0
28 TraesCS1D01G223600 chr7D 82.889 450 62 12 3524 3964 169440183 169439740 1.680000e-104 390.0
29 TraesCS1D01G223600 chr7B 84.062 389 41 8 3579 3964 127652415 127652045 6.150000e-94 355.0
30 TraesCS1D01G223600 chr7A 78.165 632 72 24 3339 3964 166490850 166490279 4.790000e-90 342.0
31 TraesCS1D01G223600 chr7A 78.165 632 72 24 3339 3964 166869990 166870561 4.790000e-90 342.0
32 TraesCS1D01G223600 chr7A 91.667 144 12 0 4849 4992 474051730 474051587 3.050000e-47 200.0
33 TraesCS1D01G223600 chrUn 85.498 331 30 6 3630 3960 218480268 218480580 3.730000e-86 329.0
34 TraesCS1D01G223600 chrUn 85.498 331 30 6 3630 3960 244607875 244608187 3.730000e-86 329.0
35 TraesCS1D01G223600 chr6D 85.498 331 30 6 3630 3960 103052703 103053015 3.730000e-86 329.0
36 TraesCS1D01G223600 chr6D 85.498 331 30 6 3630 3960 103084010 103084322 3.730000e-86 329.0
37 TraesCS1D01G223600 chr6A 93.151 219 13 2 1 218 129846581 129846798 2.240000e-83 320.0
38 TraesCS1D01G223600 chr4D 93.151 219 14 1 1 218 48509170 48509388 2.240000e-83 320.0
39 TraesCS1D01G223600 chr4D 93.151 219 14 1 1 218 409685457 409685239 2.240000e-83 320.0
40 TraesCS1D01G223600 chr3D 93.151 219 14 1 1 218 253432605 253432823 2.240000e-83 320.0
41 TraesCS1D01G223600 chr4A 83.824 68 11 0 228 295 88775821 88775754 1.160000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G223600 chr1D 311365442 311370433 4991 True 4665.00 9219 94.27100 1 4992 2 chr1D.!!$R2 4991
1 TraesCS1D01G223600 chr1B 421096691 421100967 4276 True 1060.80 3965 89.90900 473 4423 5 chr1B.!!$R2 3950
2 TraesCS1D01G223600 chr1B 375889245 375890835 1590 True 1017.00 1851 88.23950 1994 3606 2 chr1B.!!$R1 1612
3 TraesCS1D01G223600 chr1A 391256729 391260905 4176 True 1553.25 3735 90.67075 237 4320 4 chr1A.!!$R1 4083
4 TraesCS1D01G223600 chr1A 417341897 417342417 520 False 566.00 566 87.54800 4512 4992 1 chr1A.!!$F3 480
5 TraesCS1D01G223600 chr2B 749572663 749574659 1996 True 1277.50 2366 88.76250 1574 3597 2 chr2B.!!$R2 2023
6 TraesCS1D01G223600 chr5D 514539552 514540079 527 False 588.00 588 88.06800 4507 4992 1 chr5D.!!$F2 485
7 TraesCS1D01G223600 chr5D 357401016 357401537 521 True 582.00 582 88.12300 4512 4992 1 chr5D.!!$R1 480
8 TraesCS1D01G223600 chr7D 164751507 164752081 574 True 427.00 427 80.44900 3345 3964 1 chr7D.!!$R1 619
9 TraesCS1D01G223600 chr7D 165118800 165119376 576 False 401.00 401 79.61800 3340 3964 1 chr7D.!!$F1 624
10 TraesCS1D01G223600 chr7A 166490279 166490850 571 True 342.00 342 78.16500 3339 3964 1 chr7A.!!$R1 625
11 TraesCS1D01G223600 chr7A 166869990 166870561 571 False 342.00 342 78.16500 3339 3964 1 chr7A.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
326 332 0.040603 GCTCGAAGCATTATGCCAGC 60.041 55.0 14.1 12.08 46.52 4.85 F
420 426 0.108567 GGAGAAGAGAAGACCACGCC 60.109 60.0 0.0 0.00 0.00 5.68 F
1222 1261 0.105913 AATTGTGGGGTTCGGTGGTT 60.106 50.0 0.0 0.00 0.00 3.67 F
1229 1268 0.179040 GGGTTCGGTGGTTCACTTGA 60.179 55.0 0.0 0.00 34.40 3.02 F
1382 1433 0.462789 CTTTGGATTGGATGCTGCCC 59.537 55.0 0.0 0.00 0.00 5.36 F
2670 3229 0.966920 TCAGTCTTCGGTCAGGTTCC 59.033 55.0 0.0 0.00 0.00 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1222 1261 0.105964 CACCAAGACCGGTCAAGTGA 59.894 55.000 35.00 0.00 37.07 3.41 R
1229 1268 0.469144 AAATTGGCACCAAGACCGGT 60.469 50.000 6.92 6.92 41.07 5.28 R
2495 3034 0.394488 TGACAAGGCAAAACGGTCCA 60.394 50.000 0.00 0.00 0.00 4.02 R
3186 3751 0.547712 CTCAGGTCCTCCTTTCCCCA 60.548 60.000 0.00 0.00 43.07 4.96 R
3484 4062 1.072331 ACATCTGAGTGGTTGGTGGAC 59.928 52.381 0.00 0.00 0.00 4.02 R
4435 5041 0.625849 GGAGCTCCTCAAAATCCCCA 59.374 55.000 26.25 0.00 31.08 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.434420 CAATGCTCAATTTTCCCTTACAATAAA 57.566 29.630 0.00 0.00 0.00 1.40
28 29 9.657419 ATGCTCAATTTTCCCTTACAATAAAAG 57.343 29.630 0.00 0.00 0.00 2.27
29 30 8.865090 TGCTCAATTTTCCCTTACAATAAAAGA 58.135 29.630 0.00 0.00 0.00 2.52
30 31 9.875691 GCTCAATTTTCCCTTACAATAAAAGAT 57.124 29.630 0.00 0.00 0.00 2.40
79 80 4.542662 GCTTTATGCATCGATGACAACT 57.457 40.909 29.20 13.68 42.31 3.16
80 81 4.913376 GCTTTATGCATCGATGACAACTT 58.087 39.130 29.20 13.05 42.31 2.66
81 82 6.048073 GCTTTATGCATCGATGACAACTTA 57.952 37.500 29.20 12.16 42.31 2.24
82 83 5.904080 GCTTTATGCATCGATGACAACTTAC 59.096 40.000 29.20 8.89 42.31 2.34
83 84 6.238211 GCTTTATGCATCGATGACAACTTACT 60.238 38.462 29.20 11.80 42.31 2.24
84 85 7.609760 TTTATGCATCGATGACAACTTACTT 57.390 32.000 29.20 11.18 0.00 2.24
85 86 8.710835 TTTATGCATCGATGACAACTTACTTA 57.289 30.769 29.20 10.31 0.00 2.24
86 87 8.710835 TTATGCATCGATGACAACTTACTTAA 57.289 30.769 29.20 14.74 0.00 1.85
87 88 7.609760 ATGCATCGATGACAACTTACTTAAA 57.390 32.000 29.20 0.87 0.00 1.52
88 89 7.060600 TGCATCGATGACAACTTACTTAAAG 57.939 36.000 29.20 0.00 41.33 1.85
89 90 6.092122 TGCATCGATGACAACTTACTTAAAGG 59.908 38.462 29.20 0.00 39.73 3.11
90 91 6.312918 GCATCGATGACAACTTACTTAAAGGA 59.687 38.462 29.20 0.00 39.73 3.36
91 92 7.011482 GCATCGATGACAACTTACTTAAAGGAT 59.989 37.037 29.20 0.00 39.73 3.24
92 93 8.543774 CATCGATGACAACTTACTTAAAGGATC 58.456 37.037 21.02 0.00 39.73 3.36
93 94 7.837863 TCGATGACAACTTACTTAAAGGATCT 58.162 34.615 0.00 0.00 39.73 2.75
94 95 8.311836 TCGATGACAACTTACTTAAAGGATCTT 58.688 33.333 0.00 0.00 39.73 2.40
95 96 9.582431 CGATGACAACTTACTTAAAGGATCTTA 57.418 33.333 0.00 0.00 39.73 2.10
126 127 9.325248 TCCATAGATAATTATGATGGACACTCA 57.675 33.333 23.31 9.75 40.86 3.41
127 128 9.376075 CCATAGATAATTATGATGGACACTCAC 57.624 37.037 21.57 0.00 39.61 3.51
128 129 9.933723 CATAGATAATTATGATGGACACTCACA 57.066 33.333 1.78 0.00 33.75 3.58
130 131 6.933521 AGATAATTATGATGGACACTCACAGC 59.066 38.462 1.78 0.00 0.00 4.40
131 132 3.979101 TTATGATGGACACTCACAGCA 57.021 42.857 0.00 0.00 37.41 4.41
132 133 2.865119 ATGATGGACACTCACAGCAA 57.135 45.000 0.00 0.00 36.52 3.91
133 134 2.174363 TGATGGACACTCACAGCAAG 57.826 50.000 0.00 0.00 29.03 4.01
134 135 1.693606 TGATGGACACTCACAGCAAGA 59.306 47.619 0.00 0.00 29.03 3.02
135 136 2.104622 TGATGGACACTCACAGCAAGAA 59.895 45.455 0.00 0.00 29.03 2.52
136 137 2.708216 TGGACACTCACAGCAAGAAA 57.292 45.000 0.00 0.00 0.00 2.52
137 138 2.288666 TGGACACTCACAGCAAGAAAC 58.711 47.619 0.00 0.00 0.00 2.78
138 139 2.092968 TGGACACTCACAGCAAGAAACT 60.093 45.455 0.00 0.00 0.00 2.66
139 140 2.289002 GGACACTCACAGCAAGAAACTG 59.711 50.000 0.00 0.00 41.08 3.16
140 141 2.289002 GACACTCACAGCAAGAAACTGG 59.711 50.000 0.00 0.00 39.55 4.00
141 142 1.605710 CACTCACAGCAAGAAACTGGG 59.394 52.381 0.00 0.00 40.05 4.45
142 143 1.212935 ACTCACAGCAAGAAACTGGGT 59.787 47.619 0.00 0.00 39.65 4.51
143 144 1.876156 CTCACAGCAAGAAACTGGGTC 59.124 52.381 0.00 0.00 39.65 4.46
144 145 1.490490 TCACAGCAAGAAACTGGGTCT 59.510 47.619 0.00 0.00 39.65 3.85
145 146 2.703536 TCACAGCAAGAAACTGGGTCTA 59.296 45.455 0.00 0.00 39.65 2.59
146 147 3.135712 TCACAGCAAGAAACTGGGTCTAA 59.864 43.478 0.00 0.00 39.65 2.10
147 148 3.251004 CACAGCAAGAAACTGGGTCTAAC 59.749 47.826 0.00 0.00 39.55 2.34
148 149 2.480419 CAGCAAGAAACTGGGTCTAACG 59.520 50.000 0.00 0.00 0.00 3.18
149 150 1.804748 GCAAGAAACTGGGTCTAACGG 59.195 52.381 0.00 0.00 0.00 4.44
150 151 2.809299 GCAAGAAACTGGGTCTAACGGT 60.809 50.000 0.00 0.00 0.00 4.83
151 152 3.473625 CAAGAAACTGGGTCTAACGGTT 58.526 45.455 0.00 0.00 39.00 4.44
152 153 3.851458 AGAAACTGGGTCTAACGGTTT 57.149 42.857 0.00 2.34 46.81 3.27
153 154 4.160642 AGAAACTGGGTCTAACGGTTTT 57.839 40.909 0.00 0.00 44.86 2.43
154 155 4.529897 AGAAACTGGGTCTAACGGTTTTT 58.470 39.130 0.00 0.00 44.86 1.94
155 156 4.337274 AGAAACTGGGTCTAACGGTTTTTG 59.663 41.667 0.00 0.00 44.86 2.44
156 157 2.578786 ACTGGGTCTAACGGTTTTTGG 58.421 47.619 0.00 0.00 0.00 3.28
157 158 2.173143 ACTGGGTCTAACGGTTTTTGGA 59.827 45.455 0.00 0.00 0.00 3.53
158 159 3.181437 ACTGGGTCTAACGGTTTTTGGAT 60.181 43.478 0.00 0.00 0.00 3.41
159 160 3.150767 TGGGTCTAACGGTTTTTGGATG 58.849 45.455 0.00 0.00 0.00 3.51
160 161 2.094906 GGGTCTAACGGTTTTTGGATGC 60.095 50.000 0.00 0.00 0.00 3.91
161 162 2.554893 GGTCTAACGGTTTTTGGATGCA 59.445 45.455 0.00 0.00 0.00 3.96
162 163 3.561503 GTCTAACGGTTTTTGGATGCAC 58.438 45.455 0.00 0.00 0.00 4.57
163 164 3.003897 GTCTAACGGTTTTTGGATGCACA 59.996 43.478 0.00 0.00 0.00 4.57
164 165 2.969628 AACGGTTTTTGGATGCACAA 57.030 40.000 0.00 0.00 0.00 3.33
165 166 2.507339 ACGGTTTTTGGATGCACAAG 57.493 45.000 0.00 0.00 0.00 3.16
166 167 1.754226 ACGGTTTTTGGATGCACAAGT 59.246 42.857 0.00 0.00 0.00 3.16
167 168 2.952978 ACGGTTTTTGGATGCACAAGTA 59.047 40.909 0.00 0.00 0.00 2.24
168 169 3.004315 ACGGTTTTTGGATGCACAAGTAG 59.996 43.478 0.00 0.00 0.00 2.57
169 170 3.004315 CGGTTTTTGGATGCACAAGTAGT 59.996 43.478 0.00 0.00 0.00 2.73
170 171 4.214545 CGGTTTTTGGATGCACAAGTAGTA 59.785 41.667 0.00 0.00 0.00 1.82
171 172 5.106317 CGGTTTTTGGATGCACAAGTAGTAT 60.106 40.000 0.00 0.00 0.00 2.12
172 173 6.322491 GGTTTTTGGATGCACAAGTAGTATC 58.678 40.000 0.00 0.00 0.00 2.24
173 174 6.151144 GGTTTTTGGATGCACAAGTAGTATCT 59.849 38.462 0.00 0.00 0.00 1.98
174 175 6.985188 TTTTGGATGCACAAGTAGTATCTC 57.015 37.500 0.00 0.00 0.00 2.75
175 176 5.939764 TTGGATGCACAAGTAGTATCTCT 57.060 39.130 0.00 0.00 0.00 3.10
176 177 7.418337 TTTGGATGCACAAGTAGTATCTCTA 57.582 36.000 0.00 0.00 0.00 2.43
177 178 6.392625 TGGATGCACAAGTAGTATCTCTAC 57.607 41.667 0.00 0.00 46.68 2.59
194 195 9.460906 GTATCTCTACTTAGTACGGATTTTTGG 57.539 37.037 7.35 0.00 0.00 3.28
195 196 6.335777 TCTCTACTTAGTACGGATTTTTGGC 58.664 40.000 0.00 0.00 0.00 4.52
196 197 6.154021 TCTCTACTTAGTACGGATTTTTGGCT 59.846 38.462 0.00 0.00 0.00 4.75
197 198 7.340232 TCTCTACTTAGTACGGATTTTTGGCTA 59.660 37.037 0.00 0.00 0.00 3.93
198 199 7.486647 TCTACTTAGTACGGATTTTTGGCTAG 58.513 38.462 0.00 0.00 0.00 3.42
199 200 4.874396 ACTTAGTACGGATTTTTGGCTAGC 59.126 41.667 6.04 6.04 0.00 3.42
200 201 3.343941 AGTACGGATTTTTGGCTAGCA 57.656 42.857 18.24 0.00 0.00 3.49
201 202 3.681593 AGTACGGATTTTTGGCTAGCAA 58.318 40.909 18.24 0.85 0.00 3.91
202 203 4.076394 AGTACGGATTTTTGGCTAGCAAA 58.924 39.130 18.24 9.18 0.00 3.68
203 204 4.521256 AGTACGGATTTTTGGCTAGCAAAA 59.479 37.500 18.24 15.78 0.00 2.44
204 205 3.913089 ACGGATTTTTGGCTAGCAAAAG 58.087 40.909 16.64 8.10 33.74 2.27
205 206 3.572255 ACGGATTTTTGGCTAGCAAAAGA 59.428 39.130 16.64 13.36 33.74 2.52
206 207 4.220602 ACGGATTTTTGGCTAGCAAAAGAT 59.779 37.500 18.10 18.10 33.74 2.40
207 208 4.800471 CGGATTTTTGGCTAGCAAAAGATC 59.200 41.667 28.23 28.23 33.74 2.75
208 209 5.111989 GGATTTTTGGCTAGCAAAAGATCC 58.888 41.667 34.49 34.49 35.20 3.36
209 210 5.105187 GGATTTTTGGCTAGCAAAAGATCCT 60.105 40.000 37.36 16.20 36.94 3.24
210 211 6.096846 GGATTTTTGGCTAGCAAAAGATCCTA 59.903 38.462 37.36 16.69 36.94 2.94
211 212 6.909550 TTTTTGGCTAGCAAAAGATCCTAA 57.090 33.333 16.64 5.34 33.74 2.69
212 213 6.515272 TTTTGGCTAGCAAAAGATCCTAAG 57.485 37.500 16.64 0.00 0.00 2.18
213 214 3.545703 TGGCTAGCAAAAGATCCTAAGC 58.454 45.455 18.24 0.00 0.00 3.09
214 215 3.054434 TGGCTAGCAAAAGATCCTAAGCA 60.054 43.478 18.24 0.00 0.00 3.91
215 216 3.947834 GGCTAGCAAAAGATCCTAAGCAA 59.052 43.478 18.24 0.00 0.00 3.91
216 217 4.399303 GGCTAGCAAAAGATCCTAAGCAAA 59.601 41.667 18.24 0.00 0.00 3.68
217 218 5.335935 GCTAGCAAAAGATCCTAAGCAAAC 58.664 41.667 10.63 0.00 0.00 2.93
218 219 4.425577 AGCAAAAGATCCTAAGCAAACG 57.574 40.909 0.00 0.00 0.00 3.60
219 220 2.917343 GCAAAAGATCCTAAGCAAACGC 59.083 45.455 0.00 0.00 0.00 4.84
220 221 3.163594 CAAAAGATCCTAAGCAAACGCG 58.836 45.455 3.53 3.53 0.00 6.01
221 222 2.094762 AAGATCCTAAGCAAACGCGT 57.905 45.000 5.58 5.58 0.00 6.01
222 223 2.094762 AGATCCTAAGCAAACGCGTT 57.905 45.000 20.79 20.79 0.00 4.84
223 224 2.423577 AGATCCTAAGCAAACGCGTTT 58.576 42.857 30.36 30.36 0.00 3.60
231 232 2.753416 CAAACGCGTTTGTCTCGTG 58.247 52.632 41.99 25.16 43.52 4.35
233 234 3.609258 ACGCGTTTGTCTCGTGTC 58.391 55.556 5.58 0.00 46.49 3.67
234 235 1.947642 ACGCGTTTGTCTCGTGTCC 60.948 57.895 5.58 0.00 46.49 4.02
235 236 1.947146 CGCGTTTGTCTCGTGTCCA 60.947 57.895 0.00 0.00 34.71 4.02
252 253 1.429021 CATGTGGACGCAAATCGGG 59.571 57.895 0.00 0.00 43.86 5.14
268 269 0.249573 CGGGCGTAAATATGGACCGT 60.250 55.000 0.00 0.00 35.47 4.83
269 270 1.000385 CGGGCGTAAATATGGACCGTA 60.000 52.381 0.00 0.00 35.47 4.02
278 279 5.996669 AAATATGGACCGTAAATCCGTTC 57.003 39.130 0.00 0.00 39.30 3.95
280 281 2.083167 TGGACCGTAAATCCGTTCAC 57.917 50.000 0.00 0.00 39.30 3.18
282 283 2.027929 TGGACCGTAAATCCGTTCACAT 60.028 45.455 0.00 0.00 39.30 3.21
283 284 2.350498 GGACCGTAAATCCGTTCACATG 59.650 50.000 0.00 0.00 0.00 3.21
285 286 2.027929 ACCGTAAATCCGTTCACATGGA 60.028 45.455 0.00 0.00 42.73 3.41
291 292 2.390599 CCGTTCACATGGACAGCGG 61.391 63.158 0.00 0.00 32.05 5.52
292 293 2.390599 CGTTCACATGGACAGCGGG 61.391 63.158 0.00 0.00 0.00 6.13
295 296 4.758251 CACATGGACAGCGGGCGA 62.758 66.667 0.00 0.00 0.00 5.54
296 297 4.457496 ACATGGACAGCGGGCGAG 62.457 66.667 0.00 0.00 0.00 5.03
302 303 4.148825 ACAGCGGGCGAGCCTTAG 62.149 66.667 14.33 7.18 38.01 2.18
303 304 4.899239 CAGCGGGCGAGCCTTAGG 62.899 72.222 14.33 0.00 38.01 2.69
305 306 4.468689 GCGGGCGAGCCTTAGGTT 62.469 66.667 14.33 0.00 36.10 3.50
306 307 2.267961 CGGGCGAGCCTTAGGTTT 59.732 61.111 14.33 0.00 36.10 3.27
307 308 2.106683 CGGGCGAGCCTTAGGTTTG 61.107 63.158 14.33 0.00 36.10 2.93
308 309 2.407428 GGGCGAGCCTTAGGTTTGC 61.407 63.158 17.61 17.61 41.68 3.68
310 311 1.369839 GGCGAGCCTTAGGTTTGCTC 61.370 60.000 23.37 11.71 46.21 4.26
312 313 3.834732 GAGCCTTAGGTTTGCTCGA 57.165 52.632 0.00 0.00 41.74 4.04
314 315 2.003301 GAGCCTTAGGTTTGCTCGAAG 58.997 52.381 0.00 0.00 41.74 3.79
326 332 0.040603 GCTCGAAGCATTATGCCAGC 60.041 55.000 14.10 12.08 46.52 4.85
342 348 2.350964 GCCAGCGTTTTCATCCGTTTTA 60.351 45.455 0.00 0.00 0.00 1.52
344 350 4.481463 CCAGCGTTTTCATCCGTTTTAAT 58.519 39.130 0.00 0.00 0.00 1.40
345 351 4.920927 CCAGCGTTTTCATCCGTTTTAATT 59.079 37.500 0.00 0.00 0.00 1.40
352 358 7.995998 CGTTTTCATCCGTTTTAATTCAAACAG 59.004 33.333 14.00 4.50 36.58 3.16
357 363 6.438259 TCCGTTTTAATTCAAACAGACACA 57.562 33.333 14.00 0.00 36.58 3.72
358 364 6.259638 TCCGTTTTAATTCAAACAGACACAC 58.740 36.000 14.00 0.00 36.58 3.82
359 365 6.094325 TCCGTTTTAATTCAAACAGACACACT 59.906 34.615 14.00 0.00 36.58 3.55
360 366 7.280428 TCCGTTTTAATTCAAACAGACACACTA 59.720 33.333 14.00 0.00 36.58 2.74
361 367 7.586300 CCGTTTTAATTCAAACAGACACACTAG 59.414 37.037 14.00 0.00 36.58 2.57
362 368 8.332464 CGTTTTAATTCAAACAGACACACTAGA 58.668 33.333 14.00 0.00 36.58 2.43
366 372 9.554395 TTAATTCAAACAGACACACTAGAATCA 57.446 29.630 0.00 0.00 0.00 2.57
371 377 8.344831 TCAAACAGACACACTAGAATCAAAATG 58.655 33.333 0.00 0.00 0.00 2.32
377 383 5.643348 ACACACTAGAATCAAAATGCATCGA 59.357 36.000 0.00 0.00 0.00 3.59
378 384 5.961843 CACACTAGAATCAAAATGCATCGAC 59.038 40.000 0.00 0.00 0.00 4.20
379 385 5.643348 ACACTAGAATCAAAATGCATCGACA 59.357 36.000 0.00 0.00 0.00 4.35
390 396 1.000052 TGCATCGACACGTTGGAGTTA 60.000 47.619 0.00 0.00 0.00 2.24
393 399 0.314935 TCGACACGTTGGAGTTACCC 59.685 55.000 0.00 0.00 38.00 3.69
398 404 2.699846 ACACGTTGGAGTTACCCTTACA 59.300 45.455 0.00 0.00 38.00 2.41
400 406 4.202388 ACACGTTGGAGTTACCCTTACAAT 60.202 41.667 0.00 0.00 38.00 2.71
403 409 4.563993 CGTTGGAGTTACCCTTACAATGGA 60.564 45.833 0.00 0.00 38.00 3.41
404 410 4.837093 TGGAGTTACCCTTACAATGGAG 57.163 45.455 0.00 0.00 38.00 3.86
405 411 4.431378 TGGAGTTACCCTTACAATGGAGA 58.569 43.478 0.00 0.00 38.00 3.71
407 413 5.045869 TGGAGTTACCCTTACAATGGAGAAG 60.046 44.000 0.00 0.00 38.00 2.85
410 416 6.023603 AGTTACCCTTACAATGGAGAAGAGA 58.976 40.000 0.00 0.00 0.00 3.10
420 426 0.108567 GGAGAAGAGAAGACCACGCC 60.109 60.000 0.00 0.00 0.00 5.68
448 454 2.094390 CACTGATCCATGCAACCAAAGG 60.094 50.000 0.00 0.00 0.00 3.11
456 462 1.282875 GCAACCAAAGGCGTCTCAC 59.717 57.895 0.00 0.00 0.00 3.51
457 463 1.569493 CAACCAAAGGCGTCTCACG 59.431 57.895 0.00 0.00 45.88 4.35
467 473 1.797933 CGTCTCACGCCGTCTCAAG 60.798 63.158 0.00 0.00 33.65 3.02
470 481 0.888619 TCTCACGCCGTCTCAAGAAT 59.111 50.000 0.00 0.00 0.00 2.40
475 486 4.059511 TCACGCCGTCTCAAGAATAAAAA 58.940 39.130 0.00 0.00 0.00 1.94
563 575 0.740868 CCACTGGCCACATGTAGACG 60.741 60.000 0.00 0.00 0.00 4.18
620 635 0.313987 CACCCCGAAAGAAAAGCACC 59.686 55.000 0.00 0.00 0.00 5.01
740 755 4.704833 CTCACCCCCACGCACCAG 62.705 72.222 0.00 0.00 0.00 4.00
904 919 5.057819 GGTTTCCGACTTTTCTTTCTCTCT 58.942 41.667 0.00 0.00 0.00 3.10
933 960 1.671328 CTCTCTATCCAAGTCGACGCA 59.329 52.381 10.46 0.00 0.00 5.24
943 970 0.596600 AGTCGACGCAGCGAAGAAAA 60.597 50.000 24.65 0.00 42.55 2.29
1018 1045 1.603172 CCATGACGGTAGATCGGAAGC 60.603 57.143 0.00 0.00 0.00 3.86
1187 1226 4.422073 TTCTGGTGGCTGATCGATTTAT 57.578 40.909 0.00 0.00 0.00 1.40
1192 1231 2.031682 GTGGCTGATCGATTTATGTGCC 60.032 50.000 0.00 8.14 39.53 5.01
1222 1261 0.105913 AATTGTGGGGTTCGGTGGTT 60.106 50.000 0.00 0.00 0.00 3.67
1223 1262 0.538746 ATTGTGGGGTTCGGTGGTTC 60.539 55.000 0.00 0.00 0.00 3.62
1229 1268 0.179040 GGGTTCGGTGGTTCACTTGA 60.179 55.000 0.00 0.00 34.40 3.02
1244 1283 2.674563 CTTGACCGGTCTTGGTGCCA 62.675 60.000 33.39 10.27 44.01 4.92
1264 1314 4.100373 CCAATTTGGGGATTAGGGTTTCA 58.900 43.478 7.60 0.00 32.67 2.69
1270 1320 3.526019 TGGGGATTAGGGTTTCAGGTTAG 59.474 47.826 0.00 0.00 0.00 2.34
1296 1346 3.692101 TGTATTGGCAATTGGGAGTTACG 59.308 43.478 19.21 0.00 0.00 3.18
1297 1347 1.540267 TTGGCAATTGGGAGTTACGG 58.460 50.000 7.72 0.00 0.00 4.02
1298 1348 0.693622 TGGCAATTGGGAGTTACGGA 59.306 50.000 7.72 0.00 0.00 4.69
1299 1349 1.339631 TGGCAATTGGGAGTTACGGAG 60.340 52.381 7.72 0.00 0.00 4.63
1301 1351 2.093341 GGCAATTGGGAGTTACGGAGTA 60.093 50.000 7.72 0.00 45.11 2.59
1302 1352 2.934553 GCAATTGGGAGTTACGGAGTAC 59.065 50.000 7.72 0.00 45.76 2.73
1321 1371 6.127980 GGAGTACTTTCTAGTTCCAATTTGGC 60.128 42.308 10.76 0.00 35.06 4.52
1350 1401 0.684153 CCTGATTGGGGCGAATTGGT 60.684 55.000 0.00 0.00 0.00 3.67
1359 1410 2.487265 GGGGCGAATTGGTGTCATCTAT 60.487 50.000 0.00 0.00 0.00 1.98
1382 1433 0.462789 CTTTGGATTGGATGCTGCCC 59.537 55.000 0.00 0.00 0.00 5.36
1495 1910 5.124138 AGTCAGTACTATCTCCACAGAAACG 59.876 44.000 0.00 0.00 32.84 3.60
1529 1945 2.551270 TCTGCTCATAGGACCAGGTTT 58.449 47.619 0.00 0.00 29.40 3.27
1534 1950 3.942115 GCTCATAGGACCAGGTTTCTTTC 59.058 47.826 0.00 0.00 0.00 2.62
1693 2118 7.121168 AGTCAATACCATCAGTTTGTATTGGTG 59.879 37.037 16.95 0.00 45.97 4.17
1720 2145 2.383855 CCTTGGGGTCTGTTTGTTTCA 58.616 47.619 0.00 0.00 0.00 2.69
1722 2147 3.387699 CCTTGGGGTCTGTTTGTTTCATT 59.612 43.478 0.00 0.00 0.00 2.57
1750 2175 3.625764 GGAGCGATGTTTATGTTGCCTAA 59.374 43.478 0.00 0.00 0.00 2.69
1795 2221 2.567615 AGTACTAAGTTGGCTGGACCTG 59.432 50.000 0.00 0.00 40.22 4.00
1797 2223 1.774856 ACTAAGTTGGCTGGACCTGTT 59.225 47.619 0.00 0.00 40.22 3.16
1828 2265 2.616376 CCGTTGTTTCATCCTGTTGTCA 59.384 45.455 0.00 0.00 0.00 3.58
1829 2266 3.066064 CCGTTGTTTCATCCTGTTGTCAA 59.934 43.478 0.00 0.00 0.00 3.18
1830 2267 4.439426 CCGTTGTTTCATCCTGTTGTCAAA 60.439 41.667 0.00 0.00 0.00 2.69
1831 2268 5.098893 CGTTGTTTCATCCTGTTGTCAAAA 58.901 37.500 0.00 0.00 0.00 2.44
1832 2269 5.748152 CGTTGTTTCATCCTGTTGTCAAAAT 59.252 36.000 0.00 0.00 0.00 1.82
1833 2270 6.291743 CGTTGTTTCATCCTGTTGTCAAAATG 60.292 38.462 0.00 0.00 0.00 2.32
1834 2271 6.219417 TGTTTCATCCTGTTGTCAAAATGT 57.781 33.333 0.00 0.00 0.00 2.71
1835 2272 6.638610 TGTTTCATCCTGTTGTCAAAATGTT 58.361 32.000 0.00 0.00 0.00 2.71
1836 2273 6.534436 TGTTTCATCCTGTTGTCAAAATGTTG 59.466 34.615 0.00 0.00 35.95 3.33
1837 2274 5.850557 TCATCCTGTTGTCAAAATGTTGT 57.149 34.783 0.00 0.00 36.07 3.32
1838 2275 5.830912 TCATCCTGTTGTCAAAATGTTGTC 58.169 37.500 0.00 0.00 36.07 3.18
1908 2350 9.615295 TCTTGTTTGTCAGTTTTGTTAGTTTAC 57.385 29.630 0.00 0.00 0.00 2.01
1948 2474 7.806014 TGTCTTGTTTGTCAGTTTTGTTAGTTC 59.194 33.333 0.00 0.00 0.00 3.01
2358 2884 4.848757 GCCGTTTTGCCTTATCATTCTAG 58.151 43.478 0.00 0.00 0.00 2.43
2402 2938 2.798976 TTGAACCATTGTCTTGCTGC 57.201 45.000 0.00 0.00 0.00 5.25
2490 3029 3.306502 CCGTACTAAGAGTTCCAGCCAAA 60.307 47.826 0.00 0.00 0.00 3.28
2495 3034 6.731292 ACTAAGAGTTCCAGCCAAAATTTT 57.269 33.333 0.00 0.00 0.00 1.82
2517 3056 2.223947 GGACCGTTTTGCCTTGTCATTT 60.224 45.455 0.00 0.00 0.00 2.32
2538 3091 9.250624 TCATTTTAATAGTTGGTTTTTGAACCG 57.749 29.630 4.08 0.00 45.75 4.44
2601 3154 7.482169 TGTCATCTCACCTAAACTGACTATT 57.518 36.000 0.00 0.00 35.27 1.73
2603 3156 7.039011 TGTCATCTCACCTAAACTGACTATTGT 60.039 37.037 0.00 0.00 35.27 2.71
2621 3180 7.193595 ACTATTGTTGAACAGTTTTGTAGTGC 58.806 34.615 0.00 0.00 36.23 4.40
2622 3181 5.637006 TTGTTGAACAGTTTTGTAGTGCT 57.363 34.783 0.00 0.00 36.23 4.40
2623 3182 6.745159 TTGTTGAACAGTTTTGTAGTGCTA 57.255 33.333 0.00 0.00 36.23 3.49
2625 3184 7.328277 TGTTGAACAGTTTTGTAGTGCTAAT 57.672 32.000 0.00 0.00 36.23 1.73
2666 3225 5.011090 TGATTTATCAGTCTTCGGTCAGG 57.989 43.478 0.00 0.00 32.11 3.86
2667 3226 4.466370 TGATTTATCAGTCTTCGGTCAGGT 59.534 41.667 0.00 0.00 32.11 4.00
2668 3227 4.884668 TTTATCAGTCTTCGGTCAGGTT 57.115 40.909 0.00 0.00 0.00 3.50
2669 3228 4.451629 TTATCAGTCTTCGGTCAGGTTC 57.548 45.455 0.00 0.00 0.00 3.62
2670 3229 0.966920 TCAGTCTTCGGTCAGGTTCC 59.033 55.000 0.00 0.00 0.00 3.62
2672 3231 1.344763 CAGTCTTCGGTCAGGTTCCTT 59.655 52.381 0.00 0.00 0.00 3.36
2674 3233 2.037381 AGTCTTCGGTCAGGTTCCTTTC 59.963 50.000 0.00 0.00 0.00 2.62
2675 3234 2.037381 GTCTTCGGTCAGGTTCCTTTCT 59.963 50.000 0.00 0.00 0.00 2.52
2676 3235 2.037251 TCTTCGGTCAGGTTCCTTTCTG 59.963 50.000 0.00 0.00 0.00 3.02
2678 3237 2.257207 TCGGTCAGGTTCCTTTCTGAT 58.743 47.619 0.00 0.00 41.36 2.90
2680 3239 3.072476 TCGGTCAGGTTCCTTTCTGATTT 59.928 43.478 0.00 0.00 41.36 2.17
2682 3241 5.045869 TCGGTCAGGTTCCTTTCTGATTTAT 60.046 40.000 0.00 0.00 41.36 1.40
2683 3242 5.294552 CGGTCAGGTTCCTTTCTGATTTATC 59.705 44.000 0.00 0.00 41.36 1.75
2685 3244 6.317391 GGTCAGGTTCCTTTCTGATTTATCTG 59.683 42.308 0.00 0.00 41.36 2.90
2686 3245 6.317391 GTCAGGTTCCTTTCTGATTTATCTGG 59.683 42.308 0.00 0.00 41.36 3.86
2687 3246 6.215431 TCAGGTTCCTTTCTGATTTATCTGGA 59.785 38.462 0.00 0.00 35.37 3.86
2688 3247 7.059156 CAGGTTCCTTTCTGATTTATCTGGAT 58.941 38.462 0.00 0.00 33.11 3.41
2689 3248 7.013083 CAGGTTCCTTTCTGATTTATCTGGATG 59.987 40.741 0.00 0.00 33.11 3.51
2690 3249 6.830838 GGTTCCTTTCTGATTTATCTGGATGT 59.169 38.462 0.00 0.00 0.00 3.06
2691 3250 7.012799 GGTTCCTTTCTGATTTATCTGGATGTC 59.987 40.741 0.00 0.00 0.00 3.06
2692 3251 7.199167 TCCTTTCTGATTTATCTGGATGTCA 57.801 36.000 0.00 0.00 0.00 3.58
2693 3252 7.809238 TCCTTTCTGATTTATCTGGATGTCAT 58.191 34.615 0.00 0.00 0.00 3.06
2908 3472 4.574599 ACAAAATGTTTCTGTGGAGCTC 57.425 40.909 4.71 4.71 0.00 4.09
2926 3491 2.410053 GCTCGTCTGTTTAGTGCTTCAG 59.590 50.000 0.00 0.00 0.00 3.02
3169 3734 2.919494 GCCACCTGCAAAGGGTTCG 61.919 63.158 0.00 0.00 40.77 3.95
3186 3751 1.195115 TCGAAGAAGGGCTGTATGCT 58.805 50.000 0.00 0.00 42.39 3.79
3299 3865 4.792804 GGGTGAGCAGGCTCTGGC 62.793 72.222 20.79 11.40 43.12 4.85
3484 4062 3.400505 TCATGCGAGTCTACTACAACG 57.599 47.619 0.00 0.00 34.73 4.10
3521 4111 0.179032 TGTTGCTTCTTCCTTGCCGA 60.179 50.000 0.00 0.00 0.00 5.54
3561 4151 2.158696 AGATTTACTCCCAGCCAGATGC 60.159 50.000 0.00 0.00 41.71 3.91
3574 4164 0.671472 CAGATGCGCTTGAGTCCACA 60.671 55.000 9.73 0.00 0.00 4.17
3647 4240 0.890542 TGACGCTGGCTCAAGCATTT 60.891 50.000 4.13 0.00 43.73 2.32
3712 4305 0.111446 TTTCCAGTTTGCCGGATGGA 59.889 50.000 5.05 7.19 40.04 3.41
3775 4368 1.468914 GAAGCCGACCCAATTGAAGTC 59.531 52.381 7.12 12.17 0.00 3.01
3780 4373 2.100605 GACCCAATTGAAGTCGAGCT 57.899 50.000 7.12 0.00 0.00 4.09
3803 4396 2.311854 ACTGGGGGCTCCTGGAATG 61.312 63.158 15.36 0.00 38.62 2.67
3944 4540 1.750399 GATCGGGCCATGCACAACT 60.750 57.895 4.39 0.00 0.00 3.16
4081 4679 4.497006 CGCTCCAATGAAGATCAAATGGTC 60.497 45.833 12.47 0.00 38.12 4.02
4086 4687 2.616960 TGAAGATCAAATGGTCGACCG 58.383 47.619 28.70 15.04 39.43 4.79
4264 4865 4.895668 ATGTGAAAATGCATTTCCCTGT 57.104 36.364 24.28 9.04 45.67 4.00
4273 4874 2.971330 TGCATTTCCCTGTCCATGTTTT 59.029 40.909 0.00 0.00 0.00 2.43
4279 4880 7.614494 CATTTCCCTGTCCATGTTTTCTTAAT 58.386 34.615 0.00 0.00 0.00 1.40
4320 4924 8.962679 TGTCTTTTTAAAATACTGTCTGGTTGT 58.037 29.630 0.55 0.00 0.00 3.32
4388 4992 3.182341 TGTACTTACCGCACTTGTGTT 57.818 42.857 2.61 0.00 0.00 3.32
4389 4993 3.125316 TGTACTTACCGCACTTGTGTTC 58.875 45.455 2.61 0.00 0.00 3.18
4424 5030 2.870372 GCTGCCGCCAAACTGTAG 59.130 61.111 0.00 0.00 0.00 2.74
4425 5031 1.966451 GCTGCCGCCAAACTGTAGT 60.966 57.895 0.00 0.00 0.00 2.73
4426 5032 0.672401 GCTGCCGCCAAACTGTAGTA 60.672 55.000 0.00 0.00 0.00 1.82
4427 5033 2.012051 GCTGCCGCCAAACTGTAGTAT 61.012 52.381 0.00 0.00 0.00 2.12
4428 5034 1.933853 CTGCCGCCAAACTGTAGTATC 59.066 52.381 0.00 0.00 0.00 2.24
4429 5035 1.296727 GCCGCCAAACTGTAGTATCC 58.703 55.000 0.00 0.00 0.00 2.59
4430 5036 1.134491 GCCGCCAAACTGTAGTATCCT 60.134 52.381 0.00 0.00 0.00 3.24
4431 5037 2.822764 CCGCCAAACTGTAGTATCCTC 58.177 52.381 0.00 0.00 0.00 3.71
4432 5038 2.431057 CCGCCAAACTGTAGTATCCTCT 59.569 50.000 0.00 0.00 0.00 3.69
4433 5039 3.448686 CGCCAAACTGTAGTATCCTCTG 58.551 50.000 0.00 0.00 0.00 3.35
4434 5040 3.119101 CGCCAAACTGTAGTATCCTCTGT 60.119 47.826 0.00 0.00 0.00 3.41
4435 5041 4.620803 CGCCAAACTGTAGTATCCTCTGTT 60.621 45.833 0.00 0.00 0.00 3.16
4436 5042 4.631813 GCCAAACTGTAGTATCCTCTGTTG 59.368 45.833 0.00 0.00 0.00 3.33
4437 5043 5.178797 CCAAACTGTAGTATCCTCTGTTGG 58.821 45.833 0.00 0.00 0.00 3.77
4438 5044 5.178797 CAAACTGTAGTATCCTCTGTTGGG 58.821 45.833 0.00 0.00 0.00 4.12
4439 5045 3.375699 ACTGTAGTATCCTCTGTTGGGG 58.624 50.000 0.00 0.00 0.00 4.96
4440 5046 3.012502 ACTGTAGTATCCTCTGTTGGGGA 59.987 47.826 0.00 0.00 35.96 4.81
4441 5047 4.227197 CTGTAGTATCCTCTGTTGGGGAT 58.773 47.826 2.80 2.80 43.77 3.85
4442 5048 4.631234 TGTAGTATCCTCTGTTGGGGATT 58.369 43.478 2.53 0.00 41.86 3.01
4443 5049 5.036916 TGTAGTATCCTCTGTTGGGGATTT 58.963 41.667 2.53 0.00 41.86 2.17
4444 5050 5.491078 TGTAGTATCCTCTGTTGGGGATTTT 59.509 40.000 2.53 0.00 41.86 1.82
4445 5051 4.860022 AGTATCCTCTGTTGGGGATTTTG 58.140 43.478 2.53 0.00 41.86 2.44
4446 5052 4.540099 AGTATCCTCTGTTGGGGATTTTGA 59.460 41.667 2.53 0.00 41.86 2.69
4447 5053 3.439857 TCCTCTGTTGGGGATTTTGAG 57.560 47.619 0.00 0.00 0.00 3.02
4448 5054 2.041620 TCCTCTGTTGGGGATTTTGAGG 59.958 50.000 0.00 0.00 40.47 3.86
4449 5055 2.041620 CCTCTGTTGGGGATTTTGAGGA 59.958 50.000 0.00 0.00 41.31 3.71
4450 5056 3.350833 CTCTGTTGGGGATTTTGAGGAG 58.649 50.000 0.00 0.00 0.00 3.69
4451 5057 1.821136 CTGTTGGGGATTTTGAGGAGC 59.179 52.381 0.00 0.00 0.00 4.70
4452 5058 1.428912 TGTTGGGGATTTTGAGGAGCT 59.571 47.619 0.00 0.00 0.00 4.09
4453 5059 2.095461 GTTGGGGATTTTGAGGAGCTC 58.905 52.381 4.71 4.71 0.00 4.09
4454 5060 0.625849 TGGGGATTTTGAGGAGCTCC 59.374 55.000 26.22 26.22 0.00 4.70
4455 5061 0.625849 GGGGATTTTGAGGAGCTCCA 59.374 55.000 33.90 14.09 38.89 3.86
4456 5062 1.005924 GGGGATTTTGAGGAGCTCCAA 59.994 52.381 33.90 19.77 38.89 3.53
4457 5063 2.557452 GGGGATTTTGAGGAGCTCCAAA 60.557 50.000 33.90 24.50 38.89 3.28
4458 5064 3.369175 GGGATTTTGAGGAGCTCCAAAT 58.631 45.455 33.90 27.67 38.14 2.32
4459 5065 3.771479 GGGATTTTGAGGAGCTCCAAATT 59.229 43.478 33.90 20.87 36.44 1.82
4460 5066 4.223700 GGGATTTTGAGGAGCTCCAAATTT 59.776 41.667 33.90 13.75 36.44 1.82
4461 5067 5.280164 GGGATTTTGAGGAGCTCCAAATTTT 60.280 40.000 33.90 12.93 36.44 1.82
4462 5068 5.871524 GGATTTTGAGGAGCTCCAAATTTTC 59.128 40.000 33.90 21.20 36.44 2.29
4463 5069 6.295518 GGATTTTGAGGAGCTCCAAATTTTCT 60.296 38.462 33.90 11.28 36.44 2.52
4464 5070 7.093771 GGATTTTGAGGAGCTCCAAATTTTCTA 60.094 37.037 33.90 15.50 36.44 2.10
4465 5071 7.781324 TTTTGAGGAGCTCCAAATTTTCTAT 57.219 32.000 33.90 9.66 38.89 1.98
4466 5072 7.396540 TTTGAGGAGCTCCAAATTTTCTATC 57.603 36.000 33.90 18.36 38.89 2.08
4467 5073 6.065976 TGAGGAGCTCCAAATTTTCTATCA 57.934 37.500 33.90 20.66 38.89 2.15
4468 5074 6.484288 TGAGGAGCTCCAAATTTTCTATCAA 58.516 36.000 33.90 7.30 38.89 2.57
4469 5075 7.121382 TGAGGAGCTCCAAATTTTCTATCAAT 58.879 34.615 33.90 7.66 38.89 2.57
4470 5076 7.067859 TGAGGAGCTCCAAATTTTCTATCAATG 59.932 37.037 33.90 0.00 38.89 2.82
4471 5077 7.121382 AGGAGCTCCAAATTTTCTATCAATGA 58.879 34.615 33.90 0.00 38.89 2.57
4472 5078 7.284944 AGGAGCTCCAAATTTTCTATCAATGAG 59.715 37.037 33.90 0.00 38.89 2.90
4473 5079 7.344095 AGCTCCAAATTTTCTATCAATGAGG 57.656 36.000 0.00 0.00 0.00 3.86
4474 5080 7.121382 AGCTCCAAATTTTCTATCAATGAGGA 58.879 34.615 0.00 0.00 0.00 3.71
4475 5081 7.616935 AGCTCCAAATTTTCTATCAATGAGGAA 59.383 33.333 0.00 0.00 0.00 3.36
4476 5082 8.253113 GCTCCAAATTTTCTATCAATGAGGAAA 58.747 33.333 9.11 9.11 0.00 3.13
4523 5129 8.900781 ACACGTCTATACATACTAGTTGATTGT 58.099 33.333 0.00 3.35 0.00 2.71
4533 5139 1.305201 AGTTGATTGTCCGTGCGTTT 58.695 45.000 0.00 0.00 0.00 3.60
4534 5140 1.002900 AGTTGATTGTCCGTGCGTTTG 60.003 47.619 0.00 0.00 0.00 2.93
4536 5142 1.442017 GATTGTCCGTGCGTTTGCC 60.442 57.895 0.00 0.00 41.78 4.52
4670 5279 2.548057 CACGTAACTCTTGCAACACCAT 59.452 45.455 0.00 0.00 0.00 3.55
4674 5283 4.091509 CGTAACTCTTGCAACACCATACTC 59.908 45.833 0.00 0.00 0.00 2.59
4675 5284 3.769739 ACTCTTGCAACACCATACTCA 57.230 42.857 0.00 0.00 0.00 3.41
4677 5286 4.005650 ACTCTTGCAACACCATACTCATG 58.994 43.478 0.00 0.00 0.00 3.07
4678 5287 2.749076 TCTTGCAACACCATACTCATGC 59.251 45.455 0.00 0.00 0.00 4.06
4679 5288 2.197283 TGCAACACCATACTCATGCA 57.803 45.000 0.00 0.00 41.08 3.96
4680 5289 2.512705 TGCAACACCATACTCATGCAA 58.487 42.857 0.00 0.00 40.47 4.08
4687 5304 3.887110 CACCATACTCATGCAATCCACAT 59.113 43.478 0.00 0.00 0.00 3.21
4838 5456 6.206634 ACCGACAACATCTAACATCAAACATT 59.793 34.615 0.00 0.00 0.00 2.71
4874 5522 2.179427 ACATCTCTCACCACCGATTGA 58.821 47.619 0.00 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.434420 TTTATTGTAAGGGAAAATTGAGCATTG 57.566 29.630 0.00 0.00 0.00 2.82
4 5 9.875691 ATCTTTTATTGTAAGGGAAAATTGAGC 57.124 29.630 0.00 0.00 0.00 4.26
58 59 4.542662 AGTTGTCATCGATGCATAAAGC 57.457 40.909 20.81 1.09 45.96 3.51
59 60 7.239166 AGTAAGTTGTCATCGATGCATAAAG 57.761 36.000 20.81 0.00 0.00 1.85
60 61 7.609760 AAGTAAGTTGTCATCGATGCATAAA 57.390 32.000 20.81 8.84 0.00 1.40
61 62 8.710835 TTAAGTAAGTTGTCATCGATGCATAA 57.289 30.769 20.81 11.82 0.00 1.90
62 63 8.710835 TTTAAGTAAGTTGTCATCGATGCATA 57.289 30.769 20.81 8.57 0.00 3.14
63 64 7.201644 CCTTTAAGTAAGTTGTCATCGATGCAT 60.202 37.037 20.81 0.00 31.56 3.96
64 65 6.092122 CCTTTAAGTAAGTTGTCATCGATGCA 59.908 38.462 20.81 17.77 31.56 3.96
65 66 6.312918 TCCTTTAAGTAAGTTGTCATCGATGC 59.687 38.462 20.81 15.45 31.56 3.91
66 67 7.827819 TCCTTTAAGTAAGTTGTCATCGATG 57.172 36.000 19.61 19.61 31.56 3.84
67 68 8.478877 AGATCCTTTAAGTAAGTTGTCATCGAT 58.521 33.333 0.00 0.00 31.56 3.59
68 69 7.837863 AGATCCTTTAAGTAAGTTGTCATCGA 58.162 34.615 0.00 0.00 31.56 3.59
69 70 8.480643 AAGATCCTTTAAGTAAGTTGTCATCG 57.519 34.615 0.00 0.00 31.56 3.84
100 101 9.325248 TGAGTGTCCATCATAATTATCTATGGA 57.675 33.333 23.51 23.51 42.89 3.41
101 102 9.376075 GTGAGTGTCCATCATAATTATCTATGG 57.624 37.037 20.94 20.94 38.76 2.74
102 103 9.933723 TGTGAGTGTCCATCATAATTATCTATG 57.066 33.333 0.00 3.11 0.00 2.23
104 105 8.090831 GCTGTGAGTGTCCATCATAATTATCTA 58.909 37.037 0.00 0.00 0.00 1.98
105 106 6.933521 GCTGTGAGTGTCCATCATAATTATCT 59.066 38.462 0.00 0.00 0.00 1.98
106 107 6.707608 TGCTGTGAGTGTCCATCATAATTATC 59.292 38.462 0.00 0.00 0.00 1.75
107 108 6.594744 TGCTGTGAGTGTCCATCATAATTAT 58.405 36.000 0.00 0.00 0.00 1.28
108 109 5.988287 TGCTGTGAGTGTCCATCATAATTA 58.012 37.500 0.00 0.00 0.00 1.40
109 110 4.847198 TGCTGTGAGTGTCCATCATAATT 58.153 39.130 0.00 0.00 0.00 1.40
110 111 4.492494 TGCTGTGAGTGTCCATCATAAT 57.508 40.909 0.00 0.00 0.00 1.28
111 112 3.979101 TGCTGTGAGTGTCCATCATAA 57.021 42.857 0.00 0.00 0.00 1.90
112 113 3.515104 TCTTGCTGTGAGTGTCCATCATA 59.485 43.478 0.00 0.00 0.00 2.15
113 114 2.303890 TCTTGCTGTGAGTGTCCATCAT 59.696 45.455 0.00 0.00 0.00 2.45
114 115 1.693606 TCTTGCTGTGAGTGTCCATCA 59.306 47.619 0.00 0.00 0.00 3.07
115 116 2.462456 TCTTGCTGTGAGTGTCCATC 57.538 50.000 0.00 0.00 0.00 3.51
116 117 2.880890 GTTTCTTGCTGTGAGTGTCCAT 59.119 45.455 0.00 0.00 0.00 3.41
117 118 2.092968 AGTTTCTTGCTGTGAGTGTCCA 60.093 45.455 0.00 0.00 0.00 4.02
118 119 2.289002 CAGTTTCTTGCTGTGAGTGTCC 59.711 50.000 0.00 0.00 0.00 4.02
119 120 2.289002 CCAGTTTCTTGCTGTGAGTGTC 59.711 50.000 0.00 0.00 32.41 3.67
120 121 2.292267 CCAGTTTCTTGCTGTGAGTGT 58.708 47.619 0.00 0.00 32.41 3.55
121 122 1.605710 CCCAGTTTCTTGCTGTGAGTG 59.394 52.381 0.00 0.00 32.41 3.51
122 123 1.212935 ACCCAGTTTCTTGCTGTGAGT 59.787 47.619 0.00 0.00 32.41 3.41
123 124 1.876156 GACCCAGTTTCTTGCTGTGAG 59.124 52.381 0.00 0.00 32.41 3.51
124 125 1.490490 AGACCCAGTTTCTTGCTGTGA 59.510 47.619 0.00 0.00 32.41 3.58
125 126 1.972872 AGACCCAGTTTCTTGCTGTG 58.027 50.000 0.00 0.00 32.41 3.66
126 127 3.477530 GTTAGACCCAGTTTCTTGCTGT 58.522 45.455 0.00 0.00 32.41 4.40
127 128 2.480419 CGTTAGACCCAGTTTCTTGCTG 59.520 50.000 0.00 0.00 0.00 4.41
128 129 2.550208 CCGTTAGACCCAGTTTCTTGCT 60.550 50.000 0.00 0.00 0.00 3.91
129 130 1.804748 CCGTTAGACCCAGTTTCTTGC 59.195 52.381 0.00 0.00 0.00 4.01
130 131 3.121738 ACCGTTAGACCCAGTTTCTTG 57.878 47.619 0.00 0.00 0.00 3.02
131 132 3.851458 AACCGTTAGACCCAGTTTCTT 57.149 42.857 0.00 0.00 0.00 2.52
132 133 3.851458 AAACCGTTAGACCCAGTTTCT 57.149 42.857 0.00 0.00 0.00 2.52
133 134 4.498513 CCAAAAACCGTTAGACCCAGTTTC 60.499 45.833 0.00 0.00 30.66 2.78
134 135 3.382227 CCAAAAACCGTTAGACCCAGTTT 59.618 43.478 0.00 0.00 32.26 2.66
135 136 2.953648 CCAAAAACCGTTAGACCCAGTT 59.046 45.455 0.00 0.00 0.00 3.16
136 137 2.173143 TCCAAAAACCGTTAGACCCAGT 59.827 45.455 0.00 0.00 0.00 4.00
137 138 2.853705 TCCAAAAACCGTTAGACCCAG 58.146 47.619 0.00 0.00 0.00 4.45
138 139 3.150767 CATCCAAAAACCGTTAGACCCA 58.849 45.455 0.00 0.00 0.00 4.51
139 140 2.094906 GCATCCAAAAACCGTTAGACCC 60.095 50.000 0.00 0.00 0.00 4.46
140 141 2.554893 TGCATCCAAAAACCGTTAGACC 59.445 45.455 0.00 0.00 0.00 3.85
141 142 3.003897 TGTGCATCCAAAAACCGTTAGAC 59.996 43.478 0.00 0.00 0.00 2.59
142 143 3.215151 TGTGCATCCAAAAACCGTTAGA 58.785 40.909 0.00 0.00 0.00 2.10
143 144 3.634568 TGTGCATCCAAAAACCGTTAG 57.365 42.857 0.00 0.00 0.00 2.34
144 145 3.381908 ACTTGTGCATCCAAAAACCGTTA 59.618 39.130 0.00 0.00 0.00 3.18
145 146 2.167487 ACTTGTGCATCCAAAAACCGTT 59.833 40.909 0.00 0.00 0.00 4.44
146 147 1.754226 ACTTGTGCATCCAAAAACCGT 59.246 42.857 0.00 0.00 0.00 4.83
147 148 2.507339 ACTTGTGCATCCAAAAACCG 57.493 45.000 0.00 0.00 0.00 4.44
148 149 4.584327 ACTACTTGTGCATCCAAAAACC 57.416 40.909 0.00 0.00 0.00 3.27
149 150 7.119846 AGAGATACTACTTGTGCATCCAAAAAC 59.880 37.037 0.00 0.00 0.00 2.43
150 151 7.168219 AGAGATACTACTTGTGCATCCAAAAA 58.832 34.615 0.00 0.00 0.00 1.94
151 152 6.711277 AGAGATACTACTTGTGCATCCAAAA 58.289 36.000 0.00 0.00 0.00 2.44
152 153 6.299805 AGAGATACTACTTGTGCATCCAAA 57.700 37.500 0.00 0.00 0.00 3.28
153 154 5.939764 AGAGATACTACTTGTGCATCCAA 57.060 39.130 0.00 0.00 0.00 3.53
154 155 6.392625 GTAGAGATACTACTTGTGCATCCA 57.607 41.667 0.00 0.00 45.56 3.41
168 169 9.460906 CCAAAAATCCGTACTAAGTAGAGATAC 57.539 37.037 0.00 0.00 0.00 2.24
169 170 8.139989 GCCAAAAATCCGTACTAAGTAGAGATA 58.860 37.037 0.00 0.00 0.00 1.98
170 171 6.985059 GCCAAAAATCCGTACTAAGTAGAGAT 59.015 38.462 0.00 0.00 0.00 2.75
171 172 6.154021 AGCCAAAAATCCGTACTAAGTAGAGA 59.846 38.462 0.00 0.00 0.00 3.10
172 173 6.338937 AGCCAAAAATCCGTACTAAGTAGAG 58.661 40.000 0.00 0.00 0.00 2.43
173 174 6.290294 AGCCAAAAATCCGTACTAAGTAGA 57.710 37.500 0.00 0.00 0.00 2.59
174 175 6.200475 GCTAGCCAAAAATCCGTACTAAGTAG 59.800 42.308 2.29 0.00 0.00 2.57
175 176 6.044682 GCTAGCCAAAAATCCGTACTAAGTA 58.955 40.000 2.29 0.00 0.00 2.24
176 177 4.874396 GCTAGCCAAAAATCCGTACTAAGT 59.126 41.667 2.29 0.00 0.00 2.24
177 178 4.873827 TGCTAGCCAAAAATCCGTACTAAG 59.126 41.667 13.29 0.00 0.00 2.18
178 179 4.834534 TGCTAGCCAAAAATCCGTACTAA 58.165 39.130 13.29 0.00 0.00 2.24
179 180 4.475051 TGCTAGCCAAAAATCCGTACTA 57.525 40.909 13.29 0.00 0.00 1.82
180 181 3.343941 TGCTAGCCAAAAATCCGTACT 57.656 42.857 13.29 0.00 0.00 2.73
181 182 4.428615 TTTGCTAGCCAAAAATCCGTAC 57.571 40.909 13.29 0.00 40.32 3.67
190 191 4.399303 GCTTAGGATCTTTTGCTAGCCAAA 59.601 41.667 13.29 13.07 41.48 3.28
191 192 3.947834 GCTTAGGATCTTTTGCTAGCCAA 59.052 43.478 13.29 4.35 29.09 4.52
192 193 3.054434 TGCTTAGGATCTTTTGCTAGCCA 60.054 43.478 13.29 0.00 29.09 4.75
193 194 3.545703 TGCTTAGGATCTTTTGCTAGCC 58.454 45.455 13.29 0.00 29.09 3.93
194 195 5.335935 GTTTGCTTAGGATCTTTTGCTAGC 58.664 41.667 8.10 8.10 29.09 3.42
195 196 5.563842 CGTTTGCTTAGGATCTTTTGCTAG 58.436 41.667 0.00 0.00 29.09 3.42
196 197 4.142687 GCGTTTGCTTAGGATCTTTTGCTA 60.143 41.667 0.00 0.00 38.39 3.49
197 198 3.366374 GCGTTTGCTTAGGATCTTTTGCT 60.366 43.478 0.00 0.00 38.39 3.91
198 199 2.917343 GCGTTTGCTTAGGATCTTTTGC 59.083 45.455 0.00 0.00 38.39 3.68
199 200 3.163594 CGCGTTTGCTTAGGATCTTTTG 58.836 45.455 0.00 0.00 39.65 2.44
200 201 2.812011 ACGCGTTTGCTTAGGATCTTTT 59.188 40.909 5.58 0.00 39.65 2.27
201 202 2.423577 ACGCGTTTGCTTAGGATCTTT 58.576 42.857 5.58 0.00 39.65 2.52
202 203 2.094762 ACGCGTTTGCTTAGGATCTT 57.905 45.000 5.58 0.00 39.65 2.40
203 204 2.094762 AACGCGTTTGCTTAGGATCT 57.905 45.000 20.79 0.00 39.65 2.75
204 205 2.505866 CAAACGCGTTTGCTTAGGATC 58.494 47.619 41.32 0.00 42.66 3.36
205 206 2.611974 CAAACGCGTTTGCTTAGGAT 57.388 45.000 41.32 15.79 42.66 3.24
217 218 1.282248 ATGGACACGAGACAAACGCG 61.282 55.000 3.53 3.53 46.44 6.01
218 219 0.163788 CATGGACACGAGACAAACGC 59.836 55.000 0.00 0.00 0.00 4.84
219 220 1.192312 CACATGGACACGAGACAAACG 59.808 52.381 0.00 0.00 0.00 3.60
220 221 1.531149 CCACATGGACACGAGACAAAC 59.469 52.381 0.00 0.00 37.39 2.93
221 222 1.414550 TCCACATGGACACGAGACAAA 59.585 47.619 0.00 0.00 39.78 2.83
222 223 1.044611 TCCACATGGACACGAGACAA 58.955 50.000 0.00 0.00 39.78 3.18
223 224 2.740121 TCCACATGGACACGAGACA 58.260 52.632 0.00 0.00 39.78 3.41
232 233 1.024046 CCGATTTGCGTCCACATGGA 61.024 55.000 0.00 0.00 38.47 3.41
233 234 1.429021 CCGATTTGCGTCCACATGG 59.571 57.895 0.00 0.00 38.67 3.66
234 235 1.429021 CCCGATTTGCGTCCACATG 59.571 57.895 0.00 0.00 38.67 3.21
235 236 2.406616 GCCCGATTTGCGTCCACAT 61.407 57.895 0.00 0.00 38.67 3.21
243 244 2.550606 TCCATATTTACGCCCGATTTGC 59.449 45.455 0.00 0.00 0.00 3.68
252 253 4.143263 CGGATTTACGGTCCATATTTACGC 60.143 45.833 0.00 0.00 35.41 4.42
268 269 3.006940 GCTGTCCATGTGAACGGATTTA 58.993 45.455 0.00 0.00 32.83 1.40
269 270 1.812571 GCTGTCCATGTGAACGGATTT 59.187 47.619 0.00 0.00 32.83 2.17
278 279 4.758251 TCGCCCGCTGTCCATGTG 62.758 66.667 0.00 0.00 0.00 3.21
285 286 4.148825 CTAAGGCTCGCCCGCTGT 62.149 66.667 3.92 0.00 39.21 4.40
291 292 1.369839 GAGCAAACCTAAGGCTCGCC 61.370 60.000 0.00 0.00 43.83 5.54
292 293 2.090693 GAGCAAACCTAAGGCTCGC 58.909 57.895 0.00 0.00 43.83 5.03
295 296 1.946283 GCTTCGAGCAAACCTAAGGCT 60.946 52.381 2.53 0.00 41.89 4.58
296 297 0.448197 GCTTCGAGCAAACCTAAGGC 59.552 55.000 2.53 0.00 41.89 4.35
307 308 0.040603 GCTGGCATAATGCTTCGAGC 60.041 55.000 0.00 0.58 44.28 5.03
308 309 0.234106 CGCTGGCATAATGCTTCGAG 59.766 55.000 0.00 0.00 44.28 4.04
310 311 0.378257 AACGCTGGCATAATGCTTCG 59.622 50.000 0.00 0.00 44.28 3.79
312 313 2.230992 TGAAAACGCTGGCATAATGCTT 59.769 40.909 0.00 0.00 44.28 3.91
314 315 2.276472 TGAAAACGCTGGCATAATGC 57.724 45.000 0.00 0.00 44.08 3.56
316 317 2.033299 CGGATGAAAACGCTGGCATAAT 59.967 45.455 0.00 0.00 0.00 1.28
317 318 1.400142 CGGATGAAAACGCTGGCATAA 59.600 47.619 0.00 0.00 0.00 1.90
318 319 1.013596 CGGATGAAAACGCTGGCATA 58.986 50.000 0.00 0.00 0.00 3.14
319 320 0.960364 ACGGATGAAAACGCTGGCAT 60.960 50.000 0.00 0.00 0.00 4.40
320 321 1.169661 AACGGATGAAAACGCTGGCA 61.170 50.000 0.00 0.00 0.00 4.92
325 331 6.441099 TTGAATTAAAACGGATGAAAACGC 57.559 33.333 0.00 0.00 0.00 4.84
326 332 7.832550 TGTTTGAATTAAAACGGATGAAAACG 58.167 30.769 12.78 0.00 41.92 3.60
342 348 8.450578 TTGATTCTAGTGTGTCTGTTTGAATT 57.549 30.769 0.00 0.00 0.00 2.17
344 350 7.857734 TTTGATTCTAGTGTGTCTGTTTGAA 57.142 32.000 0.00 0.00 0.00 2.69
345 351 7.857734 TTTTGATTCTAGTGTGTCTGTTTGA 57.142 32.000 0.00 0.00 0.00 2.69
352 358 5.961843 CGATGCATTTTGATTCTAGTGTGTC 59.038 40.000 0.00 0.00 0.00 3.67
357 363 5.220472 CGTGTCGATGCATTTTGATTCTAGT 60.220 40.000 0.00 0.00 0.00 2.57
358 364 5.193216 CGTGTCGATGCATTTTGATTCTAG 58.807 41.667 0.00 0.00 0.00 2.43
359 365 4.629634 ACGTGTCGATGCATTTTGATTCTA 59.370 37.500 0.00 0.00 0.00 2.10
360 366 3.436704 ACGTGTCGATGCATTTTGATTCT 59.563 39.130 0.00 0.00 0.00 2.40
361 367 3.747193 ACGTGTCGATGCATTTTGATTC 58.253 40.909 0.00 0.00 0.00 2.52
362 368 3.829886 ACGTGTCGATGCATTTTGATT 57.170 38.095 0.00 0.00 0.00 2.57
365 371 1.978097 CCAACGTGTCGATGCATTTTG 59.022 47.619 0.00 0.00 0.00 2.44
366 372 1.876799 TCCAACGTGTCGATGCATTTT 59.123 42.857 0.00 0.00 0.00 1.82
371 377 1.389106 GTAACTCCAACGTGTCGATGC 59.611 52.381 0.00 0.00 0.00 3.91
377 383 2.699846 TGTAAGGGTAACTCCAACGTGT 59.300 45.455 0.00 0.00 38.11 4.49
378 384 3.389925 TGTAAGGGTAACTCCAACGTG 57.610 47.619 0.00 0.00 38.11 4.49
379 385 4.320870 CATTGTAAGGGTAACTCCAACGT 58.679 43.478 0.00 0.00 38.11 3.99
390 396 5.046231 GTCTTCTCTTCTCCATTGTAAGGGT 60.046 44.000 0.00 0.00 0.00 4.34
393 399 5.872070 GTGGTCTTCTCTTCTCCATTGTAAG 59.128 44.000 0.00 0.00 0.00 2.34
398 404 2.354203 GCGTGGTCTTCTCTTCTCCATT 60.354 50.000 0.00 0.00 0.00 3.16
400 406 0.603569 GCGTGGTCTTCTCTTCTCCA 59.396 55.000 0.00 0.00 0.00 3.86
403 409 1.587054 CGGCGTGGTCTTCTCTTCT 59.413 57.895 0.00 0.00 0.00 2.85
404 410 1.446272 CCGGCGTGGTCTTCTCTTC 60.446 63.158 6.01 0.00 0.00 2.87
405 411 2.657237 CCGGCGTGGTCTTCTCTT 59.343 61.111 6.01 0.00 0.00 2.85
420 426 1.820906 CATGGATCAGTGGTGGCCG 60.821 63.158 0.00 0.00 0.00 6.13
475 486 1.153369 CGGTGGATCGTGAGGCATT 60.153 57.895 0.00 0.00 0.00 3.56
584 596 1.672030 TGGATTGGACGTGCTGCTG 60.672 57.895 8.99 0.00 0.00 4.41
620 635 0.179181 TACGCTTTCGAGTGCTACCG 60.179 55.000 9.45 0.00 39.41 4.02
843 858 0.248289 GCGCCTATTTATAGCCCGGA 59.752 55.000 0.73 0.00 0.00 5.14
904 919 4.689062 ACTTGGATAGAGAGTTGGAGGAA 58.311 43.478 0.00 0.00 0.00 3.36
933 960 0.531974 TGTCGCCTGTTTTCTTCGCT 60.532 50.000 0.00 0.00 0.00 4.93
943 970 0.602638 TTCGCAATCTTGTCGCCTGT 60.603 50.000 0.00 0.00 0.00 4.00
1187 1226 0.482446 AATTCCCAACTCCAGGCACA 59.518 50.000 0.00 0.00 0.00 4.57
1192 1231 1.549203 CCCACAATTCCCAACTCCAG 58.451 55.000 0.00 0.00 0.00 3.86
1222 1261 0.105964 CACCAAGACCGGTCAAGTGA 59.894 55.000 35.00 0.00 37.07 3.41
1223 1262 1.507141 GCACCAAGACCGGTCAAGTG 61.507 60.000 35.00 32.89 37.07 3.16
1229 1268 0.469144 AAATTGGCACCAAGACCGGT 60.469 50.000 6.92 6.92 41.07 5.28
1244 1283 4.202890 ACCTGAAACCCTAATCCCCAAATT 60.203 41.667 0.00 0.00 0.00 1.82
1264 1314 3.818295 TTGCCAATACAACCCTAACCT 57.182 42.857 0.00 0.00 0.00 3.50
1270 1320 2.168313 CTCCCAATTGCCAATACAACCC 59.832 50.000 0.00 0.00 31.03 4.11
1296 1346 6.127980 GCCAAATTGGAACTAGAAAGTACTCC 60.128 42.308 17.47 0.00 40.96 3.85
1297 1347 6.402226 CGCCAAATTGGAACTAGAAAGTACTC 60.402 42.308 17.47 0.00 40.96 2.59
1298 1348 5.411669 CGCCAAATTGGAACTAGAAAGTACT 59.588 40.000 17.47 0.00 40.96 2.73
1299 1349 5.410439 TCGCCAAATTGGAACTAGAAAGTAC 59.590 40.000 17.47 0.00 40.96 2.73
1300 1350 5.553123 TCGCCAAATTGGAACTAGAAAGTA 58.447 37.500 17.47 0.00 40.96 2.24
1301 1351 4.394729 TCGCCAAATTGGAACTAGAAAGT 58.605 39.130 17.47 0.00 40.96 2.66
1302 1352 5.123820 TCATCGCCAAATTGGAACTAGAAAG 59.876 40.000 17.47 4.38 40.96 2.62
1321 1371 1.228063 CCAATCAGGGGGCTCATCG 60.228 63.158 0.00 0.00 0.00 3.84
1350 1401 5.191522 TCCAATCCAAAGGACATAGATGACA 59.808 40.000 0.00 0.00 32.98 3.58
1359 1410 2.449464 CAGCATCCAATCCAAAGGACA 58.551 47.619 0.00 0.00 36.60 4.02
1382 1433 3.588955 TCTGATTTCACACATCACTCGG 58.411 45.455 0.00 0.00 0.00 4.63
1469 1884 7.148289 CGTTTCTGTGGAGATAGTACTGACTAA 60.148 40.741 5.39 0.00 41.53 2.24
1472 1887 5.123502 TCGTTTCTGTGGAGATAGTACTGAC 59.876 44.000 5.39 0.00 0.00 3.51
1480 1895 5.186215 TGGTACAATCGTTTCTGTGGAGATA 59.814 40.000 0.00 0.00 31.92 1.98
1495 1910 3.664107 TGAGCAGAACACTGGTACAATC 58.336 45.455 0.00 0.00 41.50 2.67
1542 1958 1.160329 GCGCCATAAACATCGCTCCT 61.160 55.000 0.00 0.00 43.70 3.69
1720 2145 7.642669 CAACATAAACATCGCTCCTAATCAAT 58.357 34.615 0.00 0.00 0.00 2.57
1722 2147 5.007626 GCAACATAAACATCGCTCCTAATCA 59.992 40.000 0.00 0.00 0.00 2.57
1795 2221 6.197655 GGATGAAACAACGGAACAAGTTAAAC 59.802 38.462 0.00 0.00 0.00 2.01
1797 2223 5.591067 AGGATGAAACAACGGAACAAGTTAA 59.409 36.000 0.00 0.00 0.00 2.01
1828 2265 8.782144 ACAAAATTGACAAACAGACAACATTTT 58.218 25.926 0.00 0.00 34.86 1.82
1829 2266 8.321650 ACAAAATTGACAAACAGACAACATTT 57.678 26.923 0.00 0.00 34.86 2.32
1830 2267 7.903995 ACAAAATTGACAAACAGACAACATT 57.096 28.000 0.00 0.00 34.86 2.71
1831 2268 7.387397 ACAACAAAATTGACAAACAGACAACAT 59.613 29.630 0.00 0.00 34.86 2.71
1832 2269 6.703607 ACAACAAAATTGACAAACAGACAACA 59.296 30.769 0.00 0.00 34.86 3.33
1833 2270 7.116061 ACAACAAAATTGACAAACAGACAAC 57.884 32.000 0.00 0.00 34.86 3.32
1834 2271 7.721286 AACAACAAAATTGACAAACAGACAA 57.279 28.000 0.00 0.00 36.39 3.18
1835 2272 7.721286 AAACAACAAAATTGACAAACAGACA 57.279 28.000 0.00 0.00 0.00 3.41
1836 2273 9.900264 GATAAACAACAAAATTGACAAACAGAC 57.100 29.630 0.00 0.00 0.00 3.51
1837 2274 9.092876 GGATAAACAACAAAATTGACAAACAGA 57.907 29.630 0.00 0.00 0.00 3.41
1838 2275 8.877779 TGGATAAACAACAAAATTGACAAACAG 58.122 29.630 0.00 0.00 0.00 3.16
1908 2350 5.350504 AACAAGACATATCAGAGACTGGG 57.649 43.478 0.00 0.00 31.51 4.45
1948 2474 5.668471 ACAACACATATCAGAGACTGGATG 58.332 41.667 0.00 0.00 34.09 3.51
2358 2884 3.127030 GCAGCCACTATGAAACCAACTAC 59.873 47.826 0.00 0.00 0.00 2.73
2402 2938 4.161189 ACAGAGAGTGATACCATCAACCAG 59.839 45.833 0.00 0.00 41.69 4.00
2490 3029 3.202097 CAAGGCAAAACGGTCCAAAATT 58.798 40.909 0.00 0.00 0.00 1.82
2495 3034 0.394488 TGACAAGGCAAAACGGTCCA 60.394 50.000 0.00 0.00 0.00 4.02
2538 3091 3.374745 CATCAACCAACAGCAAGACAAC 58.625 45.455 0.00 0.00 0.00 3.32
2601 3154 6.745159 TTAGCACTACAAAACTGTTCAACA 57.255 33.333 0.00 0.00 0.00 3.33
2603 3156 9.646427 AAAAATTAGCACTACAAAACTGTTCAA 57.354 25.926 0.00 0.00 0.00 2.69
2660 3219 6.317391 CAGATAAATCAGAAAGGAACCTGACC 59.683 42.308 0.00 0.00 41.59 4.02
2661 3220 6.317391 CCAGATAAATCAGAAAGGAACCTGAC 59.683 42.308 0.00 0.00 41.59 3.51
2662 3221 6.215431 TCCAGATAAATCAGAAAGGAACCTGA 59.785 38.462 0.00 0.00 42.78 3.86
2663 3222 6.418101 TCCAGATAAATCAGAAAGGAACCTG 58.582 40.000 0.00 0.00 0.00 4.00
2665 3224 6.830838 ACATCCAGATAAATCAGAAAGGAACC 59.169 38.462 0.00 0.00 0.00 3.62
2666 3225 7.554118 TGACATCCAGATAAATCAGAAAGGAAC 59.446 37.037 0.00 0.00 0.00 3.62
2667 3226 7.632861 TGACATCCAGATAAATCAGAAAGGAA 58.367 34.615 0.00 0.00 0.00 3.36
2668 3227 7.199167 TGACATCCAGATAAATCAGAAAGGA 57.801 36.000 0.00 0.00 0.00 3.36
2669 3228 8.461249 AATGACATCCAGATAAATCAGAAAGG 57.539 34.615 0.00 0.00 0.00 3.11
2670 3229 8.566260 GGAATGACATCCAGATAAATCAGAAAG 58.434 37.037 0.00 0.00 39.42 2.62
2672 3231 7.718314 CAGGAATGACATCCAGATAAATCAGAA 59.282 37.037 6.67 0.00 42.27 3.02
2674 3233 6.996879 ACAGGAATGACATCCAGATAAATCAG 59.003 38.462 6.67 0.00 42.27 2.90
2675 3234 6.903516 ACAGGAATGACATCCAGATAAATCA 58.096 36.000 6.67 0.00 42.27 2.57
2676 3235 7.718753 AGAACAGGAATGACATCCAGATAAATC 59.281 37.037 6.67 0.00 42.27 2.17
2678 3237 6.962182 AGAACAGGAATGACATCCAGATAAA 58.038 36.000 6.67 0.00 42.27 1.40
2680 3239 6.566079 AAGAACAGGAATGACATCCAGATA 57.434 37.500 6.67 0.00 42.27 1.98
2682 3241 4.916041 AAGAACAGGAATGACATCCAGA 57.084 40.909 6.67 0.00 42.27 3.86
2683 3242 5.972107 AAAAGAACAGGAATGACATCCAG 57.028 39.130 6.67 2.22 42.27 3.86
2757 3321 8.233868 CACAGAAAACGATACCATGTTAAATCA 58.766 33.333 0.00 0.00 0.00 2.57
2798 3362 4.141251 ACAGGGACATACAAACTTCCTTGT 60.141 41.667 0.00 0.00 42.07 3.16
2810 3374 3.328382 TGTACAGCAACAGGGACATAC 57.672 47.619 0.00 0.00 0.00 2.39
2908 3472 3.555956 ACAACTGAAGCACTAAACAGACG 59.444 43.478 0.00 0.00 34.88 4.18
2926 3491 5.949233 ATCAAGAAAGAACGCAAAACAAC 57.051 34.783 0.00 0.00 0.00 3.32
2994 3559 3.257393 CAGAGCAGCAGTTAGTACCTTG 58.743 50.000 0.00 0.00 0.00 3.61
3186 3751 0.547712 CTCAGGTCCTCCTTTCCCCA 60.548 60.000 0.00 0.00 43.07 4.96
3484 4062 1.072331 ACATCTGAGTGGTTGGTGGAC 59.928 52.381 0.00 0.00 0.00 4.02
3561 4151 1.998315 CTGATTCTGTGGACTCAAGCG 59.002 52.381 0.00 0.00 32.17 4.68
3647 4240 1.205655 CTCTTCGGATGTGCTCCTTGA 59.794 52.381 0.00 0.00 42.47 3.02
3712 4305 6.222038 TCTATATCAAAACCGTCTGCTTCT 57.778 37.500 0.00 0.00 0.00 2.85
3775 4368 4.087892 CCCCCAGTGACCAGCTCG 62.088 72.222 0.00 0.00 0.00 5.03
3780 4373 4.270153 AGGAGCCCCCAGTGACCA 62.270 66.667 0.00 0.00 37.41 4.02
3944 4540 0.913924 TCAGCATCATGGAAGGCAGA 59.086 50.000 0.00 0.00 0.00 4.26
4081 4679 0.753262 AGAGGAATCCAATCCGGTCG 59.247 55.000 0.00 0.00 44.60 4.79
4086 4687 2.948315 GTTCTGCAGAGGAATCCAATCC 59.052 50.000 17.43 0.00 39.96 3.01
4353 4957 7.493645 GCGGTAAGTACAACCAGATAGTATTTT 59.506 37.037 15.40 0.00 36.78 1.82
4354 4958 6.982724 GCGGTAAGTACAACCAGATAGTATTT 59.017 38.462 15.40 0.00 36.78 1.40
4355 4959 6.097270 TGCGGTAAGTACAACCAGATAGTATT 59.903 38.462 15.40 0.00 36.78 1.89
4356 4960 5.595542 TGCGGTAAGTACAACCAGATAGTAT 59.404 40.000 15.40 0.00 36.78 2.12
4357 4961 4.949238 TGCGGTAAGTACAACCAGATAGTA 59.051 41.667 15.40 0.00 36.78 1.82
4358 4962 3.765511 TGCGGTAAGTACAACCAGATAGT 59.234 43.478 15.40 0.00 36.78 2.12
4359 4963 4.110482 GTGCGGTAAGTACAACCAGATAG 58.890 47.826 15.40 2.74 36.78 2.08
4360 4964 3.765511 AGTGCGGTAAGTACAACCAGATA 59.234 43.478 15.40 0.00 37.96 1.98
4361 4965 2.565834 AGTGCGGTAAGTACAACCAGAT 59.434 45.455 15.40 0.00 37.96 2.90
4362 4966 1.965643 AGTGCGGTAAGTACAACCAGA 59.034 47.619 15.40 1.16 37.96 3.86
4363 4967 2.450609 AGTGCGGTAAGTACAACCAG 57.549 50.000 15.40 10.06 37.96 4.00
4364 4968 2.158928 ACAAGTGCGGTAAGTACAACCA 60.159 45.455 15.40 0.00 37.96 3.67
4365 4969 2.222445 CACAAGTGCGGTAAGTACAACC 59.778 50.000 7.23 7.23 37.96 3.77
4366 4970 2.867975 ACACAAGTGCGGTAAGTACAAC 59.132 45.455 0.00 0.00 37.96 3.32
4367 4971 3.182341 ACACAAGTGCGGTAAGTACAA 57.818 42.857 0.00 0.00 37.96 2.41
4368 4972 2.894763 ACACAAGTGCGGTAAGTACA 57.105 45.000 0.00 0.00 37.96 2.90
4369 4973 2.477754 GGAACACAAGTGCGGTAAGTAC 59.522 50.000 0.00 0.00 35.57 2.73
4370 4974 2.366266 AGGAACACAAGTGCGGTAAGTA 59.634 45.455 0.00 0.00 0.00 2.24
4373 4977 2.215196 GAAGGAACACAAGTGCGGTAA 58.785 47.619 0.00 0.00 0.00 2.85
4377 4981 1.841663 CGGGAAGGAACACAAGTGCG 61.842 60.000 0.00 0.00 0.00 5.34
4388 4992 2.602267 TTCCAGCGACGGGAAGGA 60.602 61.111 7.21 0.00 39.44 3.36
4424 5030 4.855340 TCAAAATCCCCAACAGAGGATAC 58.145 43.478 0.00 0.00 42.19 2.24
4425 5031 4.079787 CCTCAAAATCCCCAACAGAGGATA 60.080 45.833 0.00 0.00 42.19 2.59
4426 5032 3.309410 CCTCAAAATCCCCAACAGAGGAT 60.309 47.826 0.00 0.00 45.01 3.24
4427 5033 2.041620 CCTCAAAATCCCCAACAGAGGA 59.958 50.000 0.00 0.00 42.87 3.71
4428 5034 2.041620 TCCTCAAAATCCCCAACAGAGG 59.958 50.000 0.00 0.00 41.88 3.69
4429 5035 3.350833 CTCCTCAAAATCCCCAACAGAG 58.649 50.000 0.00 0.00 0.00 3.35
4430 5036 2.555227 GCTCCTCAAAATCCCCAACAGA 60.555 50.000 0.00 0.00 0.00 3.41
4431 5037 1.821136 GCTCCTCAAAATCCCCAACAG 59.179 52.381 0.00 0.00 0.00 3.16
4432 5038 1.428912 AGCTCCTCAAAATCCCCAACA 59.571 47.619 0.00 0.00 0.00 3.33
4433 5039 2.095461 GAGCTCCTCAAAATCCCCAAC 58.905 52.381 0.87 0.00 0.00 3.77
4434 5040 1.005924 GGAGCTCCTCAAAATCCCCAA 59.994 52.381 26.25 0.00 31.08 4.12
4435 5041 0.625849 GGAGCTCCTCAAAATCCCCA 59.374 55.000 26.25 0.00 31.08 4.96
4436 5042 0.625849 TGGAGCTCCTCAAAATCCCC 59.374 55.000 32.28 3.37 36.82 4.81
4437 5043 2.514458 TTGGAGCTCCTCAAAATCCC 57.486 50.000 32.28 3.93 36.82 3.85
4438 5044 5.411831 AAATTTGGAGCTCCTCAAAATCC 57.588 39.130 32.28 5.03 41.60 3.01
4439 5045 6.695429 AGAAAATTTGGAGCTCCTCAAAATC 58.305 36.000 32.28 21.95 41.60 2.17
4440 5046 6.676990 AGAAAATTTGGAGCTCCTCAAAAT 57.323 33.333 32.28 24.87 43.54 1.82
4441 5047 7.451255 TGATAGAAAATTTGGAGCTCCTCAAAA 59.549 33.333 32.28 23.83 37.73 2.44
4442 5048 6.947733 TGATAGAAAATTTGGAGCTCCTCAAA 59.052 34.615 32.28 24.52 36.82 2.69
4443 5049 6.484288 TGATAGAAAATTTGGAGCTCCTCAA 58.516 36.000 32.28 24.13 36.82 3.02
4444 5050 6.065976 TGATAGAAAATTTGGAGCTCCTCA 57.934 37.500 32.28 20.02 36.82 3.86
4445 5051 7.284034 TCATTGATAGAAAATTTGGAGCTCCTC 59.716 37.037 32.28 20.22 36.82 3.71
4446 5052 7.121382 TCATTGATAGAAAATTTGGAGCTCCT 58.879 34.615 32.28 12.23 36.82 3.69
4447 5053 7.338800 TCATTGATAGAAAATTTGGAGCTCC 57.661 36.000 26.78 26.78 0.00 4.70
4448 5054 7.284034 TCCTCATTGATAGAAAATTTGGAGCTC 59.716 37.037 4.71 4.71 0.00 4.09
4449 5055 7.121382 TCCTCATTGATAGAAAATTTGGAGCT 58.879 34.615 0.00 0.00 0.00 4.09
4450 5056 7.338800 TCCTCATTGATAGAAAATTTGGAGC 57.661 36.000 0.00 0.00 0.00 4.70
4483 5089 9.275398 TGTATAGACGTGTTTTAGTTGGATTTT 57.725 29.630 0.00 0.00 0.00 1.82
4484 5090 8.836268 TGTATAGACGTGTTTTAGTTGGATTT 57.164 30.769 0.00 0.00 0.00 2.17
4486 5092 9.525409 GTATGTATAGACGTGTTTTAGTTGGAT 57.475 33.333 0.00 0.00 0.00 3.41
4487 5093 8.742777 AGTATGTATAGACGTGTTTTAGTTGGA 58.257 33.333 0.00 0.00 0.00 3.53
4488 5094 8.922058 AGTATGTATAGACGTGTTTTAGTTGG 57.078 34.615 0.00 0.00 0.00 3.77
4496 5102 9.731819 CAATCAACTAGTATGTATAGACGTGTT 57.268 33.333 0.00 0.00 0.00 3.32
4497 5103 8.900781 ACAATCAACTAGTATGTATAGACGTGT 58.099 33.333 0.00 0.00 0.00 4.49
4498 5104 9.383462 GACAATCAACTAGTATGTATAGACGTG 57.617 37.037 0.00 0.00 0.00 4.49
4499 5105 8.566260 GGACAATCAACTAGTATGTATAGACGT 58.434 37.037 0.00 0.00 0.00 4.34
4500 5106 7.745155 CGGACAATCAACTAGTATGTATAGACG 59.255 40.741 0.00 0.00 0.00 4.18
4501 5107 8.566260 ACGGACAATCAACTAGTATGTATAGAC 58.434 37.037 0.00 0.00 0.00 2.59
4502 5108 8.565416 CACGGACAATCAACTAGTATGTATAGA 58.435 37.037 0.00 0.00 0.00 1.98
4503 5109 7.326305 GCACGGACAATCAACTAGTATGTATAG 59.674 40.741 0.00 0.00 0.00 1.31
4504 5110 7.143340 GCACGGACAATCAACTAGTATGTATA 58.857 38.462 0.00 0.00 0.00 1.47
4505 5111 5.983720 GCACGGACAATCAACTAGTATGTAT 59.016 40.000 0.00 0.00 0.00 2.29
4508 5114 3.242944 CGCACGGACAATCAACTAGTATG 59.757 47.826 0.00 0.00 0.00 2.39
4533 5139 5.888691 TTTATAAATTGTCTTGCTCGGCA 57.111 34.783 0.00 0.00 36.47 5.69
4534 5140 7.591426 CCTTATTTATAAATTGTCTTGCTCGGC 59.409 37.037 15.64 0.00 0.00 5.54
4536 5142 8.128582 TGCCTTATTTATAAATTGTCTTGCTCG 58.871 33.333 15.64 0.00 0.00 5.03
4594 5203 7.781324 AAACTGGATGACCATTTGTATTTCT 57.219 32.000 0.00 0.00 45.87 2.52
4670 5279 3.947196 GGAACATGTGGATTGCATGAGTA 59.053 43.478 0.00 0.00 44.60 2.59
4762 5380 8.065473 TGTTATGTTTGGATGCTTTGTATCAT 57.935 30.769 0.00 0.00 0.00 2.45
4838 5456 2.147958 GATGTTGTCGTGGGTGCTTAA 58.852 47.619 0.00 0.00 0.00 1.85
4874 5522 2.513753 TGGATTCATGGTCAACGCTTT 58.486 42.857 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.