AutoCloner

Multiple sequence alignment - TraesCS1D01G222900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS1D01G222900	chr1D	100.000	3133	0	0	737	3869	310254459	310251327	0.000000e+00	5786.0
1	TraesCS1D01G222900	chr1D	100.000	407	0	0	1	407	310255195	310254789	0.000000e+00	752.0
2	TraesCS1D01G222900	chr1D	95.833	48	1	1	3496	3543	469813443	469813397	4.150000e-10	76.8
3	TraesCS1D01G222900	chr1B	96.739	3005	85	6	874	3869	420369460	420366460	0.000000e+00	4994.0
4	TraesCS1D01G222900	chr1B	88.000	75	8	1	176	249	675922520	675922446	1.910000e-13	87.9
5	TraesCS1D01G222900	chr1B	91.379	58	2	2	3486	3543	17963206	17963152	4.150000e-10	76.8
6	TraesCS1D01G222900	chr1A	95.119	1598	59	2	880	2477	390102241	390100663	0.000000e+00	2501.0
7	TraesCS1D01G222900	chr1A	95.383	1343	54	6	2528	3869	390100662	390099327	0.000000e+00	2130.0
8	TraesCS1D01G222900	chr1A	91.176	408	34	2	1	407	390102802	390102396	1.570000e-153	553.0
9	TraesCS1D01G222900	chr5D	73.197	1276	262	52	998	2251	432781795	432783012	4.690000e-104	388.0
10	TraesCS1D01G222900	chr5D	77.526	485	91	15	998	1473	432787111	432787586	3.810000e-70	276.0
11	TraesCS1D01G222900	chr5D	69.493	1026	242	49	1251	2240	432983442	432984432	1.140000e-15	95.3
12	TraesCS1D01G222900	chr5D	94.444	54	3	0	2187	2240	433011772	433011825	2.480000e-12	84.2
13	TraesCS1D01G222900	chr5B	72.956	1272	272	52	998	2251	525447612	525448829	1.010000e-100	377.0
14	TraesCS1D01G222900	chr5B	78.112	498	89	12	983	1473	526574708	526575192	8.130000e-77	298.0
15	TraesCS1D01G222900	chr5B	76.782	491	92	16	998	1473	525452644	525453127	4.960000e-64	255.0
16	TraesCS1D01G222900	chr5B	72.362	872	190	36	1043	1887	526269625	526270472	1.080000e-55	228.0
17	TraesCS1D01G222900	chr5B	94.915	59	0	2	3486	3544	482187786	482187841	5.320000e-14	89.8
18	TraesCS1D01G222900	chr5B	97.917	48	0	1	3496	3543	557282596	557282642	8.910000e-12	82.4
19	TraesCS1D01G222900	chr6A	74.423	997	190	50	985	1947	31745519	31744554	6.110000e-98	368.0
20	TraesCS1D01G222900	chr6A	87.013	77	9	1	177	252	377181248	377181324	6.890000e-13	86.1
21	TraesCS1D01G222900	chrUn	78.007	582	109	15	998	1568	63282944	63282371	7.960000e-92	348.0
22	TraesCS1D01G222900	chrUn	78.007	582	109	15	998	1568	327299180	327298607	7.960000e-92	348.0
23	TraesCS1D01G222900	chr5A	78.715	498	86	12	983	1473	547612838	547613322	8.070000e-82	315.0
24	TraesCS1D01G222900	chr5A	74.415	641	145	12	1050	1688	547595971	547596594	1.380000e-64	257.0
25	TraesCS1D01G222900	chr5A	98.148	54	1	0	2187	2240	547597072	547597125	1.140000e-15	95.3
26	TraesCS1D01G222900	chr5A	87.342	79	8	2	176	252	700311755	700311677	5.320000e-14	89.8
27	TraesCS1D01G222900	chr6D	89.333	75	7	1	176	249	320204264	320204190	4.120000e-15	93.5
28	TraesCS1D01G222900	chr2D	87.179	78	9	1	177	253	375376263	375376186	1.910000e-13	87.9
29	TraesCS1D01G222900	chr7A	87.013	77	9	1	177	252	9155504	9155580	6.890000e-13	86.1
30	TraesCS1D01G222900	chr7A	87.838	74	8	1	177	249	27235349	27235422	6.890000e-13	86.1
31	TraesCS1D01G222900	chr3A	87.013	77	9	1	177	252	128134893	128134817	6.890000e-13	86.1
32	TraesCS1D01G222900	chr3B	97.778	45	0	1	3500	3544	445147259	445147216	4.150000e-10	76.8
33	TraesCS1D01G222900	chr4B	95.455	44	2	0	3496	3539	490662227	490662184	1.930000e-08	71.3
34	TraesCS1D01G222900	chr7B	93.478	46	2	1	3502	3547	708434540	708434496	2.490000e-07	67.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS1D01G222900	chr1D	310251327	310255195	3868	True	3269	5786	100.000000	1	3869	2	chr1D.!!$R2	3868
1	TraesCS1D01G222900	chr1B	420366460	420369460	3000	True	4994	4994	96.739000	874	3869	1	chr1B.!!$R2	2995
2	TraesCS1D01G222900	chr1A	390099327	390102802	3475	True	1728	2501	93.892667	1	3869	3	chr1A.!!$R1	3868
3	TraesCS1D01G222900	chr5D	432781795	432783012	1217	False	388	388	73.197000	998	2251	1	chr5D.!!$F1	1253
4	TraesCS1D01G222900	chr5B	525447612	525453127	5515	False	316	377	74.869000	998	2251	2	chr5B.!!$F5	1253
5	TraesCS1D01G222900	chr5B	526269625	526270472	847	False	228	228	72.362000	1043	1887	1	chr5B.!!$F2	844
6	TraesCS1D01G222900	chr6A	31744554	31745519	965	True	368	368	74.423000	985	1947	1	chr6A.!!$R1	962
7	TraesCS1D01G222900	chrUn	63282371	63282944	573	True	348	348	78.007000	998	1568	1	chrUn.!!$R1	570
8	TraesCS1D01G222900	chrUn	327298607	327299180	573	True	348	348	78.007000	998	1568	1	chrUn.!!$R2	570

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
872	881	0.608308	TCGGCTCCGAGAACAGAGAA	60.608	55.0	6.95	0.0	44.01	2.87	F
1700	1721	0.035056	GGGGATGGTGGAGTTGACAG	60.035	60.0	0.00	0.0	0.00	3.51	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2149	2188	4.286549	TGTACCCCGGAAGAGTTTGATAAA	59.713	41.667	0.73	0.0	0.00	1.40	R
3516	5561	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.000	5.23	0.0	44.66	2.12	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
32	33	2.269940	AGGGACTGTTGTTCCATAGCT	58.730	47.619	0.00	0.00	44.49	3.32
33	34	3.450904	AGGGACTGTTGTTCCATAGCTA	58.549	45.455	0.00	0.00	44.49	3.32
73	74	1.267121	GACTGCCTTGTACTCCCTCA	58.733	55.000	0.00	0.00	0.00	3.86
80	81	3.619242	GCCTTGTACTCCCTCAGTTAACC	60.619	52.174	0.88	0.00	36.43	2.85
111	112	5.402398	AGCTTTGTGTCAAGTCAAACTTTC	58.598	37.500	0.00	0.00	36.03	2.62
140	141	2.292267	ACGATTCATGGGCAGTTCATC	58.708	47.619	0.00	0.00	0.00	2.92
161	162	1.382420	AGAGAAGAGCTCCCGCCAT	60.382	57.895	10.93	0.00	45.10	4.40
204	205	1.303398	TTCGAGAGACTGAGCCGGT	60.303	57.895	1.90	0.00	41.84	5.28
214	215	7.148289	CGAGAGACTGAGCCGGTATATTATTTA	60.148	40.741	1.90	0.00	0.00	1.40
223	224	8.475331	AGCCGGTATATTATTTAAGATTGACG	57.525	34.615	1.90	0.00	0.00	4.35
260	261	2.413112	TCTCGTAGTCGACAACTAACGG	59.587	50.000	19.50	12.03	42.11	4.44
261	262	1.464608	TCGTAGTCGACAACTAACGGG	59.535	52.381	19.50	0.00	42.11	5.28
281	282	3.007635	GGAACGTCTCCACCCATTAAAG	58.992	50.000	10.67	0.00	44.67	1.85
289	290	2.042297	TCCACCCATTAAAGGCACATCA	59.958	45.455	0.00	0.00	0.00	3.07
292	293	2.225242	ACCCATTAAAGGCACATCACCA	60.225	45.455	0.00	0.00	0.00	4.17
293	294	2.428171	CCCATTAAAGGCACATCACCAG	59.572	50.000	0.00	0.00	0.00	4.00
297	298	4.846779	TTAAAGGCACATCACCAGAAAC	57.153	40.909	0.00	0.00	0.00	2.78
312	313	5.048713	CACCAGAAACATCAGGACTTAAACC	60.049	44.000	0.00	0.00	0.00	3.27
348	350	4.833478	ATCACTGTCTTGCTAACCATCT	57.167	40.909	0.00	0.00	0.00	2.90
354	356	5.045578	ACTGTCTTGCTAACCATCTAACCAT	60.046	40.000	0.00	0.00	0.00	3.55
357	359	6.070481	TGTCTTGCTAACCATCTAACCATACA	60.070	38.462	0.00	0.00	0.00	2.29
360	362	7.498900	TCTTGCTAACCATCTAACCATACATTG	59.501	37.037	0.00	0.00	0.00	2.82
385	387	6.952083	GGTTAGAAATTAAGTCTTAACGCACG	59.048	38.462	7.20	0.00	0.00	5.34
388	390	5.178809	AGAAATTAAGTCTTAACGCACGCTT	59.821	36.000	7.20	0.00	0.00	4.68
756	758	1.379044	GGGGCCACTGACCATTGAG	60.379	63.158	4.39	0.00	0.00	3.02
761	763	2.229792	GCCACTGACCATTGAGACAAA	58.770	47.619	0.00	0.00	0.00	2.83
763	765	3.119708	GCCACTGACCATTGAGACAAATC	60.120	47.826	0.00	0.00	0.00	2.17
765	767	4.155462	CCACTGACCATTGAGACAAATCTG	59.845	45.833	0.00	0.00	34.34	2.90
766	768	4.155462	CACTGACCATTGAGACAAATCTGG	59.845	45.833	0.00	0.00	34.34	3.86
768	770	3.019564	GACCATTGAGACAAATCTGGGG	58.980	50.000	0.00	0.00	34.34	4.96
782	784	2.886913	TCTGGGGCAAATCATCAAACA	58.113	42.857	0.00	0.00	0.00	2.83
784	786	1.622811	TGGGGCAAATCATCAAACACC	59.377	47.619	0.00	0.00	0.00	4.16
786	788	2.094026	GGGGCAAATCATCAAACACCTC	60.094	50.000	0.00	0.00	0.00	3.85
793	795	6.129194	GCAAATCATCAAACACCTCGTAAAAC	60.129	38.462	0.00	0.00	0.00	2.43
810	812	7.952339	TCGTAAAACGTGGTAAATCATCTAAC	58.048	34.615	0.00	0.00	43.14	2.34
840	849	6.980397	CCGGTGTTATACTTTTCCGTAGTAAT	59.020	38.462	0.00	0.00	36.84	1.89
852	861	3.254166	TCCGTAGTAATATTCGGCCACTC	59.746	47.826	2.24	0.00	42.28	3.51
870	879	3.592070	TCGGCTCCGAGAACAGAG	58.408	61.111	6.95	0.00	44.01	3.35
871	880	1.002502	TCGGCTCCGAGAACAGAGA	60.003	57.895	6.95	0.00	44.01	3.10
872	881	0.608308	TCGGCTCCGAGAACAGAGAA	60.608	55.000	6.95	0.00	44.01	2.87
964	973	3.303791	CCGTTTCCTTCCGAAAACAAGAG	60.304	47.826	0.00	0.00	42.11	2.85
996	1005	1.587054	CCCAAGCTCGAACTCGACT	59.413	57.895	0.00	0.00	44.22	4.18
1123	1138	4.465446	CCTCCCTCCCGAGCCTCA	62.465	72.222	0.00	0.00	0.00	3.86
1224	1239	2.078665	CCCATCCCCATTCCTCGGT	61.079	63.158	0.00	0.00	0.00	4.69
1446	1461	1.377987	GATTGCCGCCTACAACCCA	60.378	57.895	0.00	0.00	0.00	4.51
1501	1516	1.406065	CCATGAGATGTCCCGCTCCT	61.406	60.000	0.00	0.00	0.00	3.69
1519	1534	1.743321	CTGCTCCCTCGAGATCCACC	61.743	65.000	15.71	0.00	38.52	4.61
1700	1721	0.035056	GGGGATGGTGGAGTTGACAG	60.035	60.000	0.00	0.00	0.00	3.51
2149	2188	0.886490	CTGCCTTGAAACAGCGGAGT	60.886	55.000	0.00	0.00	34.73	3.85
2591	2645	6.913170	TGACAATATTTGAGGCTTGAAGTTC	58.087	36.000	0.00	0.00	0.00	3.01
2926	2995	4.233123	CAGTCATGCAAAGAAGCTTTGA	57.767	40.909	20.54	8.63	34.99	2.69
3038	3110	2.158449	CAGAATTGACAACTGCGAGGAC	59.842	50.000	0.00	0.00	0.00	3.85
3134	3208	1.599576	GAGAGGCAGTGGAGAACCC	59.400	63.158	0.00	0.00	34.81	4.11
3336	3410	3.066621	TGATTGAGTTTGGTGTTGCACTC	59.933	43.478	0.00	0.00	36.89	3.51
3429	3503	3.799420	CGTATTCTTCTGCACTTAGCCTC	59.201	47.826	0.00	0.00	44.83	4.70
3516	5561	6.094881	GGAAATACATCCATTTCTCCGACAAA	59.905	38.462	8.11	0.00	42.22	2.83
3764	5897	6.429151	TCACAAAATCATCCCATGAGAAGAT	58.571	36.000	0.00	0.00	43.53	2.40
3777	5910	6.183360	CCCATGAGAAGATTGCACATAACATT	60.183	38.462	0.00	0.00	0.00	2.71
3812	5945	5.064452	GCAACACATCTGAGACATAGGAAAG	59.936	44.000	0.00	0.00	0.00	2.62

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
73	74	5.993441	ACACAAAGCTTATACACGGTTAACT	59.007	36.000	0.00	0.00	0.00	2.24
80	81	5.176774	TGACTTGACACAAAGCTTATACACG	59.823	40.000	0.00	0.00	0.00	4.49
111	112	6.795399	ACTGCCCATGAATCGTAAATTTTAG	58.205	36.000	0.00	0.00	0.00	1.85
140	141	2.103934	CGGGAGCTCTTCTCTGCG	59.896	66.667	14.64	0.00	41.60	5.18
172	173	6.017523	CAGTCTCTCGAAGATGCTCATAACTA	60.018	42.308	0.00	0.00	36.11	2.24
173	174	4.887071	AGTCTCTCGAAGATGCTCATAACT	59.113	41.667	0.00	0.00	36.11	2.24
174	175	4.975502	CAGTCTCTCGAAGATGCTCATAAC	59.024	45.833	0.00	0.00	36.11	1.89
175	176	4.884164	TCAGTCTCTCGAAGATGCTCATAA	59.116	41.667	0.00	0.00	36.11	1.90
184	185	1.027255	CCGGCTCAGTCTCTCGAAGA	61.027	60.000	0.00	0.00	0.00	2.87
214	215	6.045318	CACCTATGATGACTTCGTCAATCTT	58.955	40.000	5.26	1.98	45.96	2.40
223	224	4.640789	ACGAGACACCTATGATGACTTC	57.359	45.455	0.00	0.00	0.00	3.01
260	261	2.773993	TTAATGGGTGGAGACGTTCC	57.226	50.000	9.13	9.13	46.98	3.62
261	262	3.007635	CCTTTAATGGGTGGAGACGTTC	58.992	50.000	0.00	0.00	0.00	3.95
276	277	4.211125	TGTTTCTGGTGATGTGCCTTTAA	58.789	39.130	0.00	0.00	0.00	1.52
281	282	2.161855	TGATGTTTCTGGTGATGTGCC	58.838	47.619	0.00	0.00	0.00	5.01
289	290	5.070685	GGTTTAAGTCCTGATGTTTCTGGT	58.929	41.667	0.00	0.00	40.78	4.00
292	293	5.584551	AGGGTTTAAGTCCTGATGTTTCT	57.415	39.130	0.00	0.00	31.11	2.52
312	313	3.070159	ACAGTGATATCCCGTTCATCAGG	59.930	47.826	0.00	0.00	29.64	3.86
325	326	6.491714	AGATGGTTAGCAAGACAGTGATAT	57.508	37.500	0.00	0.00	0.00	1.63
326	327	5.939764	AGATGGTTAGCAAGACAGTGATA	57.060	39.130	0.00	0.00	0.00	2.15
327	328	4.833478	AGATGGTTAGCAAGACAGTGAT	57.167	40.909	0.00	0.00	0.00	3.06
328	329	5.479306	GTTAGATGGTTAGCAAGACAGTGA	58.521	41.667	0.00	0.00	0.00	3.41
357	359	9.005777	TGCGTTAAGACTTAATTTCTAACCAAT	57.994	29.630	10.76	0.00	0.00	3.16
360	362	6.952083	CGTGCGTTAAGACTTAATTTCTAACC	59.048	38.462	10.76	0.00	0.00	2.85
373	375	5.622041	TGAAAAATAAAGCGTGCGTTAAGAC	59.378	36.000	4.43	0.00	0.00	3.01
756	758	3.448301	TGATGATTTGCCCCAGATTTGTC	59.552	43.478	0.00	0.00	0.00	3.18
761	763	3.196254	GTGTTTGATGATTTGCCCCAGAT	59.804	43.478	0.00	0.00	0.00	2.90
763	765	2.354003	GGTGTTTGATGATTTGCCCCAG	60.354	50.000	0.00	0.00	0.00	4.45
765	767	1.901833	AGGTGTTTGATGATTTGCCCC	59.098	47.619	0.00	0.00	0.00	5.80
766	768	2.415893	CGAGGTGTTTGATGATTTGCCC	60.416	50.000	0.00	0.00	0.00	5.36
768	770	3.559238	ACGAGGTGTTTGATGATTTGC	57.441	42.857	0.00	0.00	0.00	3.68
784	786	6.642683	AGATGATTTACCACGTTTTACGAG	57.357	37.500	6.19	0.00	46.05	4.18
793	795	3.473625	GGGGGTTAGATGATTTACCACG	58.526	50.000	0.00	0.00	34.84	4.94
815	817	4.747810	ACTACGGAAAAGTATAACACCGG	58.252	43.478	0.00	0.00	43.76	5.28
816	818	7.992180	ATTACTACGGAAAAGTATAACACCG	57.008	36.000	0.00	0.00	44.77	4.94
858	867	3.617531	GCTGGATTTTCTCTGTTCTCGGA	60.618	47.826	0.00	0.00	0.00	4.55
859	868	2.675348	GCTGGATTTTCTCTGTTCTCGG	59.325	50.000	0.00	0.00	0.00	4.63
860	869	2.675348	GGCTGGATTTTCTCTGTTCTCG	59.325	50.000	0.00	0.00	0.00	4.04
861	870	2.675348	CGGCTGGATTTTCTCTGTTCTC	59.325	50.000	0.00	0.00	0.00	2.87
862	871	2.303022	TCGGCTGGATTTTCTCTGTTCT	59.697	45.455	0.00	0.00	0.00	3.01
863	872	2.675348	CTCGGCTGGATTTTCTCTGTTC	59.325	50.000	0.00	0.00	0.00	3.18
864	873	2.303022	TCTCGGCTGGATTTTCTCTGTT	59.697	45.455	0.00	0.00	0.00	3.16
865	874	1.902508	TCTCGGCTGGATTTTCTCTGT	59.097	47.619	0.00	0.00	0.00	3.41
866	875	2.167281	TCTCTCGGCTGGATTTTCTCTG	59.833	50.000	0.00	0.00	0.00	3.35
867	876	2.461695	TCTCTCGGCTGGATTTTCTCT	58.538	47.619	0.00	0.00	0.00	3.10
868	877	2.933260	GTTCTCTCGGCTGGATTTTCTC	59.067	50.000	0.00	0.00	0.00	2.87
869	878	2.569404	AGTTCTCTCGGCTGGATTTTCT	59.431	45.455	0.00	0.00	0.00	2.52
870	879	2.933260	GAGTTCTCTCGGCTGGATTTTC	59.067	50.000	0.00	0.00	0.00	2.29
871	880	2.355209	GGAGTTCTCTCGGCTGGATTTT	60.355	50.000	0.00	0.00	41.26	1.82
872	881	1.208293	GGAGTTCTCTCGGCTGGATTT	59.792	52.381	0.00	0.00	41.26	2.17
996	1005	1.925285	CTAGTTGGGAGGCCATGGCA	61.925	60.000	36.56	14.68	44.11	4.92
1224	1239	4.576873	CAGCTGTAGGACTCGATAAAGAGA	59.423	45.833	5.25	0.00	40.57	3.10
1446	1461	1.356124	AATCCAGAGCCAGTGTGAGT	58.644	50.000	0.00	0.00	0.00	3.41
1501	1516	1.758514	GGTGGATCTCGAGGGAGCA	60.759	63.158	13.56	0.00	40.26	4.26
1519	1534	2.094442	GGTCCTCTTGGAAGAAGACGAG	60.094	54.545	10.60	0.00	43.96	4.18
1529	1544	1.229529	GACCCCTGGTCCTCTTGGA	60.230	63.158	1.68	0.00	46.19	3.53
2149	2188	4.286549	TGTACCCCGGAAGAGTTTGATAAA	59.713	41.667	0.73	0.00	0.00	1.40
2926	2995	4.613437	ACTTTTGCCCCATCATCACTAAT	58.387	39.130	0.00	0.00	0.00	1.73
3038	3110	2.363680	ACACCTATCCTCAAGATGCGAG	59.636	50.000	0.00	0.00	36.33	5.03
3134	3208	2.151202	ACTGGCAAATAAGTGGTCACG	58.849	47.619	0.00	0.00	36.20	4.35
3336	3410	5.755375	ACATAAAGTGCTGTAAGATGGATCG	59.245	40.000	0.00	0.00	34.07	3.69
3429	3503	7.655328	GGAAACAATAGAGATCCACAGTATGAG	59.345	40.741	0.00	0.00	39.69	2.90
3516	5561	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.000	5.23	0.00	44.66	2.12
3738	5871	6.893554	TCTTCTCATGGGATGATTTTGTGAAT	59.106	34.615	7.07	0.00	38.85	2.57
3752	5885	4.641541	TGTTATGTGCAATCTTCTCATGGG	59.358	41.667	0.00	0.00	0.00	4.00
3764	5897	2.810852	TCAGCGTGAATGTTATGTGCAA	59.189	40.909	0.00	0.00	0.00	4.08
3777	5910	1.264020	GATGTGTTGCTTTCAGCGTGA	59.736	47.619	0.00	0.00	46.26	4.35
3797	5930	6.166984	TCCTATTGCTTTCCTATGTCTCAG	57.833	41.667	0.00	0.00	0.00	3.35
3812	5945	8.827677	CACTTGGTTTAATACTACTCCTATTGC	58.172	37.037	0.00	0.00	0.00	3.56

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.