Multiple sequence alignment - TraesCS1D01G222800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G222800 chr1D 100.000 3426 0 0 1 3426 310248883 310252308 0.000000e+00 6327.0
1 TraesCS1D01G222800 chr1D 95.833 48 1 1 2771 2818 469813397 469813443 3.670000e-10 76.8
2 TraesCS1D01G222800 chr1B 95.643 1354 47 8 2077 3426 420366098 420367443 0.000000e+00 2163.0
3 TraesCS1D01G222800 chr1B 92.747 1365 63 11 732 2075 420364707 420366056 0.000000e+00 1940.0
4 TraesCS1D01G222800 chr1B 91.304 552 31 7 1 543 420362375 420362918 0.000000e+00 737.0
5 TraesCS1D01G222800 chr1B 91.743 109 8 1 533 641 420363084 420363191 2.130000e-32 150.0
6 TraesCS1D01G222800 chr1B 91.379 58 2 2 2771 2828 17963152 17963206 3.670000e-10 76.8
7 TraesCS1D01G222800 chr1A 94.597 1351 61 9 2077 3426 390098963 390100302 0.000000e+00 2080.0
8 TraesCS1D01G222800 chr1A 94.338 1148 55 3 934 2075 390097778 390098921 0.000000e+00 1751.0
9 TraesCS1D01G222800 chr1A 90.303 660 42 13 1 641 390096757 390097413 0.000000e+00 845.0
10 TraesCS1D01G222800 chr1A 93.333 105 6 1 628 732 390097431 390097534 1.650000e-33 154.0
11 TraesCS1D01G222800 chr5B 94.915 59 0 2 2770 2828 482187841 482187786 4.710000e-14 89.8
12 TraesCS1D01G222800 chr5B 97.917 48 0 1 2771 2818 557282642 557282596 7.880000e-12 82.4
13 TraesCS1D01G222800 chr3B 97.778 45 0 1 2770 2814 445147216 445147259 3.670000e-10 76.8
14 TraesCS1D01G222800 chr4B 95.455 44 2 0 2775 2818 490662184 490662227 1.710000e-08 71.3
15 TraesCS1D01G222800 chr7B 93.478 46 2 1 2767 2812 708434496 708434540 2.210000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G222800 chr1D 310248883 310252308 3425 False 6327.0 6327 100.00000 1 3426 1 chr1D.!!$F1 3425
1 TraesCS1D01G222800 chr1B 420362375 420367443 5068 False 1247.5 2163 92.85925 1 3426 4 chr1B.!!$F2 3425
2 TraesCS1D01G222800 chr1A 390096757 390100302 3545 False 1207.5 2080 93.14275 1 3426 4 chr1A.!!$F1 3425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
601 799 0.102844 TGAAGCAACAAACTGCCTGC 59.897 50.0 0.00 0.0 43.73 4.85 F
2142 3931 0.030773 CGTCAGCTGCCGCTCTATTA 59.969 55.0 9.47 0.0 45.15 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2206 3995 0.108186 CGATGCTCCTGTACTTGCCA 60.108 55.000 0.0 0.0 0.00 4.92 R
3178 4970 1.599576 GAGAGGCAGTGGAGAACCC 59.400 63.158 0.0 0.0 34.81 4.11 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 246 5.467399 TCATCAACGGTTGTACTTTACCTTG 59.533 40.000 19.47 11.33 32.08 3.61
282 288 1.134699 TGGAATGATCGACTGGTGCTC 60.135 52.381 0.00 0.00 0.00 4.26
316 322 4.022935 GTGAATGCTTTGACCTTGATGTGA 60.023 41.667 0.00 0.00 0.00 3.58
321 327 3.550842 GCTTTGACCTTGATGTGACAACC 60.551 47.826 0.00 0.00 0.00 3.77
325 331 0.238289 CCTTGATGTGACAACCGTGC 59.762 55.000 0.00 0.00 0.00 5.34
359 377 1.896220 CCTTATGTGTGCACTGGTGT 58.104 50.000 19.41 2.39 0.00 4.16
379 399 0.318360 GTTTTGCGGCTGTTACACCC 60.318 55.000 0.00 0.00 0.00 4.61
389 409 3.069729 GGCTGTTACACCCTATCTGTAGG 59.930 52.174 0.00 0.00 46.03 3.18
426 448 6.701145 TTCATGCTTACACTTTGTTGGTTA 57.299 33.333 0.00 0.00 0.00 2.85
430 452 8.511321 TCATGCTTACACTTTGTTGGTTATAAG 58.489 33.333 0.00 0.00 0.00 1.73
469 491 5.116180 TCACTTCGATGAGTCAAACTTTGT 58.884 37.500 5.16 0.00 0.00 2.83
482 504 0.744281 ACTTTGTTGCCAAGGAACGG 59.256 50.000 0.00 0.00 32.36 4.44
502 524 3.187637 CGGACACCAAACGTACAATGAAT 59.812 43.478 0.00 0.00 0.00 2.57
550 748 9.905713 AGCTTTCTATGATTGTTGACCTTTATA 57.094 29.630 0.00 0.00 0.00 0.98
601 799 0.102844 TGAAGCAACAAACTGCCTGC 59.897 50.000 0.00 0.00 43.73 4.85
655 883 2.544480 TCGTTGACAGCACTAGATCG 57.456 50.000 0.00 0.00 0.00 3.69
665 2298 2.103263 AGCACTAGATCGAACCATTCCC 59.897 50.000 0.00 0.00 0.00 3.97
675 2319 0.988832 AACCATTCCCTCGGCAGTAA 59.011 50.000 0.00 0.00 0.00 2.24
699 2343 3.056536 TGTTGTAGACATGGACAGCTCTC 60.057 47.826 0.00 0.00 32.00 3.20
710 2354 6.212187 ACATGGACAGCTCTCTATATTGCATA 59.788 38.462 0.00 0.00 0.00 3.14
753 2397 1.737838 TATATGCTAATGGCGGCTGC 58.262 50.000 9.72 9.72 45.43 5.25
759 2403 1.533965 GCTAATGGCGGCTGCTAAAAC 60.534 52.381 18.85 0.00 42.25 2.43
796 2440 7.392393 GGGCTTGACTTTCTGTTACCTAATAAA 59.608 37.037 0.00 0.00 0.00 1.40
834 2479 8.783093 TGCATAAGTATGTTATATCAAGTTGCC 58.217 33.333 0.00 0.00 36.11 4.52
948 2689 8.955388 AGATACATACTGTACATCTCAGCTATG 58.045 37.037 0.00 0.00 35.42 2.23
985 2726 2.977914 TGATCACCAGCAAAGCTAGTC 58.022 47.619 0.00 0.00 36.40 2.59
1005 2746 0.039618 GGACCAAAGGAAGGATGGCA 59.960 55.000 0.00 0.00 37.77 4.92
1125 2866 0.829602 ACATCAGGCCGGAGATCGAT 60.830 55.000 12.27 0.00 42.43 3.59
1218 2959 2.754658 TTCTCGGCGGAGGAGTCC 60.755 66.667 19.94 0.00 40.85 3.85
1322 3068 2.828874 GCAGCAAGCAGAGAAATCTC 57.171 50.000 2.10 2.10 44.79 2.75
1434 3180 2.045242 GTTCTTCGGCCTTCCCCC 60.045 66.667 0.00 0.00 0.00 5.40
1653 3400 1.220750 TCAACTAGATCCCTCCCTCCC 59.779 57.143 0.00 0.00 0.00 4.30
1654 3401 1.221781 CAACTAGATCCCTCCCTCCCT 59.778 57.143 0.00 0.00 0.00 4.20
1655 3402 1.163408 ACTAGATCCCTCCCTCCCTC 58.837 60.000 0.00 0.00 0.00 4.30
1656 3403 0.411848 CTAGATCCCTCCCTCCCTCC 59.588 65.000 0.00 0.00 0.00 4.30
1657 3404 0.330532 TAGATCCCTCCCTCCCTCCA 60.331 60.000 0.00 0.00 0.00 3.86
1658 3405 1.460497 GATCCCTCCCTCCCTCCAC 60.460 68.421 0.00 0.00 0.00 4.02
1677 3424 1.442769 CCTTCAGGTGACATGAACCG 58.557 55.000 8.76 0.49 42.89 4.44
1683 3430 1.628340 AGGTGACATGAACCGGAATGA 59.372 47.619 9.46 0.00 42.89 2.57
1693 3442 3.378112 TGAACCGGAATGATTCAAGCATC 59.622 43.478 9.46 0.00 22.46 3.91
1707 3456 4.410099 TCAAGCATCTTTTTGATCCCTGT 58.590 39.130 0.00 0.00 32.05 4.00
1771 3520 0.450583 CGACGGAGCTAGCAAGTGTA 59.549 55.000 18.83 0.00 0.00 2.90
1777 3526 0.895530 AGCTAGCAAGTGTAGCCGAA 59.104 50.000 18.83 0.00 43.44 4.30
1780 3529 2.263077 CTAGCAAGTGTAGCCGAACAG 58.737 52.381 0.00 0.00 0.00 3.16
1811 3560 1.856873 ATGGCCAAGGACCTGGGAA 60.857 57.895 20.35 6.13 36.92 3.97
1888 3637 1.833049 CTACTACCCTCCCTGCCGG 60.833 68.421 0.00 0.00 0.00 6.13
1942 3691 3.799755 GACGGCGTTGGCATGACC 61.800 66.667 16.19 0.00 42.47 4.02
1945 3694 2.270850 GGCGTTGGCATGACCCTA 59.729 61.111 0.00 0.00 42.47 3.53
1954 3703 1.428869 GCATGACCCTACTCCTCCAT 58.571 55.000 0.00 0.00 0.00 3.41
1972 3721 2.970324 GCCAACGACGTGCAAGGA 60.970 61.111 0.00 0.00 0.00 3.36
2009 3758 1.077716 GGGGAATGGTTCTCCGTGG 60.078 63.158 0.00 0.00 41.26 4.94
2075 3824 2.166664 GAGGTGTGTTCCTAGCCAGTAG 59.833 54.545 0.00 0.00 38.02 2.57
2079 3868 4.492611 GTGTGTTCCTAGCCAGTAGTTAC 58.507 47.826 0.00 0.00 0.00 2.50
2094 3883 7.416438 GCCAGTAGTTACTATCTGCTCTGTTTA 60.416 40.741 12.96 0.00 34.13 2.01
2134 3923 1.221466 TTTCAAGTCGTCAGCTGCCG 61.221 55.000 11.62 11.62 0.00 5.69
2135 3924 3.782244 CAAGTCGTCAGCTGCCGC 61.782 66.667 13.19 7.87 0.00 6.53
2142 3931 0.030773 CGTCAGCTGCCGCTCTATTA 59.969 55.000 9.47 0.00 45.15 0.98
2144 3933 2.131183 GTCAGCTGCCGCTCTATTAAG 58.869 52.381 9.47 0.00 45.15 1.85
2145 3934 0.864455 CAGCTGCCGCTCTATTAAGC 59.136 55.000 0.00 0.00 45.15 3.09
2146 3935 0.755686 AGCTGCCGCTCTATTAAGCT 59.244 50.000 0.00 0.00 45.15 3.74
2148 3937 2.365617 AGCTGCCGCTCTATTAAGCTTA 59.634 45.455 0.86 0.86 45.15 3.09
2149 3938 3.007398 AGCTGCCGCTCTATTAAGCTTAT 59.993 43.478 7.08 0.60 45.15 1.73
2150 3939 4.220821 AGCTGCCGCTCTATTAAGCTTATA 59.779 41.667 7.08 0.00 45.15 0.98
2152 3941 5.582665 GCTGCCGCTCTATTAAGCTTATATT 59.417 40.000 7.08 0.00 40.23 1.28
2153 3942 6.456181 GCTGCCGCTCTATTAAGCTTATATTG 60.456 42.308 7.08 5.59 40.23 1.90
2154 3943 6.697395 TGCCGCTCTATTAAGCTTATATTGA 58.303 36.000 7.08 9.10 40.23 2.57
2155 3944 7.158697 TGCCGCTCTATTAAGCTTATATTGAA 58.841 34.615 7.08 0.00 40.23 2.69
2156 3945 7.659799 TGCCGCTCTATTAAGCTTATATTGAAA 59.340 33.333 7.08 0.00 40.23 2.69
2157 3946 8.669243 GCCGCTCTATTAAGCTTATATTGAAAT 58.331 33.333 7.08 0.23 40.23 2.17
2182 3971 9.722056 ATAATAAAACACTGAGAAATTGCGATC 57.278 29.630 0.00 0.00 0.00 3.69
2206 3995 4.219288 GGTTTCAAACAGATCCTCAGCAAT 59.781 41.667 1.93 0.00 0.00 3.56
2318 4107 3.564027 CGATCGGCCCGTTTCAGC 61.564 66.667 7.38 0.00 0.00 4.26
2469 4258 5.127194 GGTCAGAGTGGTGAGTGTTATGATA 59.873 44.000 0.00 0.00 0.00 2.15
2500 4289 8.827677 CACTTGGTTTAATACTACTCCTATTGC 58.172 37.037 0.00 0.00 0.00 3.56
2515 4304 6.166984 TCCTATTGCTTTCCTATGTCTCAG 57.833 41.667 0.00 0.00 0.00 3.35
2532 4321 1.532437 TCAGATGTGTTGCTTTCAGCG 59.468 47.619 0.00 0.00 46.26 5.18
2535 4324 1.264020 GATGTGTTGCTTTCAGCGTGA 59.736 47.619 0.00 0.00 46.26 4.35
2548 4337 2.810852 TCAGCGTGAATGTTATGTGCAA 59.189 40.909 0.00 0.00 0.00 4.08
2558 4347 7.431376 GTGAATGTTATGTGCAATCTTCTCATG 59.569 37.037 0.00 0.00 0.00 3.07
2560 4349 4.641541 TGTTATGTGCAATCTTCTCATGGG 59.358 41.667 0.00 0.00 0.00 4.00
2574 4363 6.893554 TCTTCTCATGGGATGATTTTGTGAAT 59.106 34.615 7.07 0.00 38.85 2.57
2796 4588 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2883 4675 7.655328 GGAAACAATAGAGATCCACAGTATGAG 59.345 40.741 0.00 0.00 39.69 2.90
2976 4768 5.755375 ACATAAAGTGCTGTAAGATGGATCG 59.245 40.000 0.00 0.00 34.07 3.69
3178 4970 2.151202 ACTGGCAAATAAGTGGTCACG 58.849 47.619 0.00 0.00 36.20 4.35
3274 5066 2.363680 ACACCTATCCTCAAGATGCGAG 59.636 50.000 0.00 0.00 36.33 5.03
3386 5178 4.613437 ACTTTTGCCCCATCATCACTAAT 58.387 39.130 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
240 246 1.043673 ATGGGGCTGGTACTCGAGAC 61.044 60.000 21.68 12.61 0.00 3.36
282 288 4.053295 CAAAGCATTCACTGGAACCAAAG 58.947 43.478 0.00 0.00 35.46 2.77
316 322 0.179140 CACAGCAAAAGCACGGTTGT 60.179 50.000 0.00 0.00 0.00 3.32
321 327 0.931662 GCAGACACAGCAAAAGCACG 60.932 55.000 0.00 0.00 0.00 5.34
325 331 3.254166 ACATAAGGCAGACACAGCAAAAG 59.746 43.478 0.00 0.00 0.00 2.27
331 340 1.466167 GCACACATAAGGCAGACACAG 59.534 52.381 0.00 0.00 0.00 3.66
359 377 0.382515 GGTGTAACAGCCGCAAAACA 59.617 50.000 0.00 0.00 39.98 2.83
379 399 4.592485 ACGCAATTCTCCCTACAGATAG 57.408 45.455 0.00 0.00 0.00 2.08
389 409 3.578688 AGCATGAAAAACGCAATTCTCC 58.421 40.909 0.00 0.00 0.00 3.71
390 410 5.629020 TGTAAGCATGAAAAACGCAATTCTC 59.371 36.000 0.00 0.00 0.00 2.87
394 414 4.870363 AGTGTAAGCATGAAAAACGCAAT 58.130 34.783 0.00 0.00 0.00 3.56
426 448 5.787494 AGTGATACCCTGTGCCATATCTTAT 59.213 40.000 0.00 0.00 0.00 1.73
430 452 4.319177 GAAGTGATACCCTGTGCCATATC 58.681 47.826 0.00 0.00 0.00 1.63
445 467 5.760253 ACAAAGTTTGACTCATCGAAGTGAT 59.240 36.000 22.23 0.00 38.01 3.06
469 491 1.527380 GGTGTCCGTTCCTTGGCAA 60.527 57.895 0.00 0.00 0.00 4.52
482 504 5.753744 TGAATTCATTGTACGTTTGGTGTC 58.246 37.500 3.38 0.00 0.00 3.67
502 524 3.753815 TGCACCTTCATGATTCACTGAA 58.246 40.909 0.00 0.00 0.00 3.02
532 554 7.118723 TCTTGGCTATAAAGGTCAACAATCAT 58.881 34.615 0.00 0.00 0.00 2.45
550 748 6.174720 TGATTTCCTATACGATTCTTGGCT 57.825 37.500 0.00 0.00 0.00 4.75
614 812 6.653320 ACGATGAGCAGGTAGTTTATTTTTCA 59.347 34.615 0.00 0.00 0.00 2.69
615 813 7.073342 ACGATGAGCAGGTAGTTTATTTTTC 57.927 36.000 0.00 0.00 0.00 2.29
621 819 4.021807 TGTCAACGATGAGCAGGTAGTTTA 60.022 41.667 0.00 0.00 35.88 2.01
624 822 1.893137 TGTCAACGATGAGCAGGTAGT 59.107 47.619 0.00 0.00 35.88 2.73
625 823 2.534298 CTGTCAACGATGAGCAGGTAG 58.466 52.381 13.59 0.00 35.88 3.18
626 824 1.404181 GCTGTCAACGATGAGCAGGTA 60.404 52.381 19.13 0.00 35.88 3.08
655 883 0.539986 TACTGCCGAGGGAATGGTTC 59.460 55.000 0.00 0.00 0.00 3.62
665 2298 4.242475 TGTCTACAACATTTACTGCCGAG 58.758 43.478 0.00 0.00 31.20 4.63
675 2319 4.019860 AGAGCTGTCCATGTCTACAACATT 60.020 41.667 0.00 0.00 46.73 2.71
729 2373 5.118990 CAGCCGCCATTAGCATATATTAGT 58.881 41.667 0.00 0.00 44.04 2.24
730 2374 4.024556 GCAGCCGCCATTAGCATATATTAG 60.025 45.833 0.00 0.00 44.04 1.73
753 2397 1.271379 GCCCCGGAAAACAGGTTTTAG 59.729 52.381 0.73 7.60 42.26 1.85
759 2403 1.228429 TCAAGCCCCGGAAAACAGG 60.228 57.895 0.73 0.00 0.00 4.00
796 2440 5.932303 ACATACTTATGCAACACGAAACTCT 59.068 36.000 0.00 0.00 37.19 3.24
834 2479 5.582269 TGCATACTCAAGAAATTCGAAGAGG 59.418 40.000 3.35 0.00 38.43 3.69
948 2689 4.387256 GTGATCAATGGCTATAAGCGTCTC 59.613 45.833 0.00 0.00 43.62 3.36
956 2697 4.436113 TTGCTGGTGATCAATGGCTATA 57.564 40.909 0.00 0.00 0.00 1.31
985 2726 1.032114 GCCATCCTTCCTTTGGTCCG 61.032 60.000 0.00 0.00 32.90 4.79
1005 2746 4.448537 CTTCATCTTGTCGAAGGACTCT 57.551 45.455 0.00 0.00 43.79 3.24
1218 2959 2.731348 GCGGATCCGAGCTTAGCG 60.731 66.667 37.64 8.13 42.83 4.26
1321 3067 7.444183 AGAAATAAAACATCAAACGTCTCCAGA 59.556 33.333 0.00 0.00 0.00 3.86
1322 3068 7.584987 AGAAATAAAACATCAAACGTCTCCAG 58.415 34.615 0.00 0.00 0.00 3.86
1434 3180 4.194720 CGGCCGACTTCTCCTCCG 62.195 72.222 24.07 0.00 0.00 4.63
1658 3405 1.442769 CGGTTCATGTCACCTGAAGG 58.557 55.000 13.00 0.00 42.17 3.46
1677 3424 7.224167 GGATCAAAAAGATGCTTGAATCATTCC 59.776 37.037 0.00 0.00 41.44 3.01
1693 3442 3.645884 CACAGCAACAGGGATCAAAAAG 58.354 45.455 0.00 0.00 0.00 2.27
1777 3526 1.901591 CCATGAACCTGAACAGCTGT 58.098 50.000 15.25 15.25 0.00 4.40
1780 3529 0.895100 TGGCCATGAACCTGAACAGC 60.895 55.000 0.00 0.00 0.00 4.40
1811 3560 2.586792 GAGCGCCTCCTGGTCAAT 59.413 61.111 2.29 0.00 34.12 2.57
1942 3691 0.179073 CGTTGGCATGGAGGAGTAGG 60.179 60.000 0.00 0.00 0.00 3.18
1945 3694 1.296715 GTCGTTGGCATGGAGGAGT 59.703 57.895 0.00 0.00 0.00 3.85
1954 3703 3.276091 CCTTGCACGTCGTTGGCA 61.276 61.111 6.31 6.31 35.41 4.92
1972 3721 0.617413 CATCCTTCCTGACCTGCAGT 59.383 55.000 13.81 0.11 43.33 4.40
1979 3728 1.133668 CCATTCCCCATCCTTCCTGAC 60.134 57.143 0.00 0.00 0.00 3.51
2075 3824 7.492669 TGCAGATTAAACAGAGCAGATAGTAAC 59.507 37.037 0.00 0.00 0.00 2.50
2079 3868 6.915544 TTGCAGATTAAACAGAGCAGATAG 57.084 37.500 0.00 0.00 33.14 2.08
2115 3904 2.616969 GGCAGCTGACGACTTGAAA 58.383 52.632 20.43 0.00 0.00 2.69
2154 3943 9.906660 TCGCAATTTCTCAGTGTTTTATTATTT 57.093 25.926 0.00 0.00 0.00 1.40
2156 3945 9.722056 GATCGCAATTTCTCAGTGTTTTATTAT 57.278 29.630 0.00 0.00 0.00 1.28
2157 3946 7.902917 CGATCGCAATTTCTCAGTGTTTTATTA 59.097 33.333 0.26 0.00 0.00 0.98
2179 3968 4.253685 TGAGGATCTGTTTGAAACCGATC 58.746 43.478 24.99 24.99 45.66 3.69
2182 3971 2.160417 GCTGAGGATCTGTTTGAAACCG 59.840 50.000 5.50 0.00 36.33 4.44
2206 3995 0.108186 CGATGCTCCTGTACTTGCCA 60.108 55.000 0.00 0.00 0.00 4.92
2500 4289 5.064452 GCAACACATCTGAGACATAGGAAAG 59.936 44.000 0.00 0.00 0.00 2.62
2532 4321 6.845302 TGAGAAGATTGCACATAACATTCAC 58.155 36.000 0.00 0.00 0.00 3.18
2535 4324 6.183360 CCCATGAGAAGATTGCACATAACATT 60.183 38.462 0.00 0.00 0.00 2.71
2548 4337 6.429151 TCACAAAATCATCCCATGAGAAGAT 58.571 36.000 0.00 0.00 43.53 2.40
2584 4373 6.279513 TGTCCACAAAACATTCTGTTCTTT 57.720 33.333 0.00 0.00 40.14 2.52
2796 4588 6.094881 GGAAATACATCCATTTCTCCGACAAA 59.905 38.462 8.11 0.00 42.22 2.83
2883 4675 3.799420 CGTATTCTTCTGCACTTAGCCTC 59.201 47.826 0.00 0.00 44.83 4.70
2976 4768 3.066621 TGATTGAGTTTGGTGTTGCACTC 59.933 43.478 0.00 0.00 36.89 3.51
3178 4970 1.599576 GAGAGGCAGTGGAGAACCC 59.400 63.158 0.00 0.00 34.81 4.11
3274 5066 2.158449 CAGAATTGACAACTGCGAGGAC 59.842 50.000 0.00 0.00 0.00 3.85
3386 5178 4.233123 CAGTCATGCAAAGAAGCTTTGA 57.767 40.909 20.54 8.63 34.99 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.