Multiple sequence alignment - TraesCS1D01G222600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G222600 chr1D 100.000 6163 0 0 1 6163 310139599 310145761 0.000000e+00 11382.0
1 TraesCS1D01G222600 chr1D 82.667 75 9 3 3393 3465 460580868 460580940 5.160000e-06 63.9
2 TraesCS1D01G222600 chr1D 97.143 35 1 0 3397 3431 490405936 490405970 6.670000e-05 60.2
3 TraesCS1D01G222600 chr3A 94.820 2278 79 16 3481 5740 128524868 128522612 0.000000e+00 3517.0
4 TraesCS1D01G222600 chr3A 93.408 1426 63 13 560 1967 128528106 128526694 0.000000e+00 2084.0
5 TraesCS1D01G222600 chr3A 92.761 594 23 9 2699 3275 128525683 128525093 0.000000e+00 841.0
6 TraesCS1D01G222600 chr3A 90.942 552 44 5 1 551 128528875 128528329 0.000000e+00 737.0
7 TraesCS1D01G222600 chr3A 86.842 494 29 10 2007 2496 128526685 128526224 2.550000e-143 520.0
8 TraesCS1D01G222600 chr3A 93.023 86 6 0 2490 2575 128526165 128526080 6.490000e-25 126.0
9 TraesCS1D01G222600 chr3A 98.214 56 1 0 6108 6163 491522227 491522172 1.410000e-16 99.0
10 TraesCS1D01G222600 chr1B 95.280 2034 73 14 3502 5527 420234671 420236689 0.000000e+00 3203.0
11 TraesCS1D01G222600 chr1B 91.144 1355 55 26 657 1964 420231539 420232875 0.000000e+00 1777.0
12 TraesCS1D01G222600 chr1B 91.165 781 44 7 2696 3455 420233885 420234661 0.000000e+00 1037.0
13 TraesCS1D01G222600 chr1B 95.296 574 22 3 2007 2575 420232889 420233462 0.000000e+00 905.0
14 TraesCS1D01G222600 chr1B 74.526 475 110 9 84 551 337935384 337934914 4.870000e-46 196.0
15 TraesCS1D01G222600 chr1A 92.227 2007 100 15 1 1964 389868334 389870327 0.000000e+00 2791.0
16 TraesCS1D01G222600 chr1A 94.280 1591 49 20 4163 5730 389873777 389875348 0.000000e+00 2396.0
17 TraesCS1D01G222600 chr1A 95.396 695 32 0 3481 4175 389872156 389872850 0.000000e+00 1107.0
18 TraesCS1D01G222600 chr1A 91.486 599 27 13 2696 3275 389871338 389871931 0.000000e+00 802.0
19 TraesCS1D01G222600 chr1A 86.965 491 28 14 2007 2493 389870341 389870799 2.550000e-143 520.0
20 TraesCS1D01G222600 chr1A 93.023 86 6 0 2490 2575 389870860 389870945 6.490000e-25 126.0
21 TraesCS1D01G222600 chr5B 89.474 456 29 5 5726 6162 474747218 474747673 5.400000e-155 558.0
22 TraesCS1D01G222600 chr5B 100.000 28 0 0 1972 1999 547544071 547544098 1.100000e-02 52.8
23 TraesCS1D01G222600 chr7D 82.759 464 47 13 5725 6163 534658321 534658776 3.490000e-102 383.0
24 TraesCS1D01G222600 chr7D 95.960 198 7 1 5736 5932 173714053 173714250 2.770000e-83 320.0
25 TraesCS1D01G222600 chr7D 88.832 197 21 1 5736 5931 420084796 420084600 2.220000e-59 241.0
26 TraesCS1D01G222600 chr7D 93.548 62 2 2 5632 5693 494934720 494934661 2.370000e-14 91.6
27 TraesCS1D01G222600 chr2D 90.355 197 18 1 5736 5931 80654360 80654164 2.200000e-64 257.0
28 TraesCS1D01G222600 chr2B 90.811 185 15 2 5748 5931 382947744 382947561 4.770000e-61 246.0
29 TraesCS1D01G222600 chr7B 88.265 196 21 2 5736 5930 199289075 199289269 3.710000e-57 233.0
30 TraesCS1D01G222600 chr7B 86.979 192 20 3 5722 5912 653881489 653881676 1.740000e-50 211.0
31 TraesCS1D01G222600 chr4A 86.802 197 25 1 5736 5931 613672798 613672994 1.040000e-52 219.0
32 TraesCS1D01G222600 chr6A 79.042 334 56 8 163 491 228527336 228527660 3.740000e-52 217.0
33 TraesCS1D01G222600 chr3B 86.500 200 23 3 5736 5931 140484313 140484114 3.740000e-52 217.0
34 TraesCS1D01G222600 chr3B 98.214 56 1 0 6108 6163 482002688 482002633 1.410000e-16 99.0
35 TraesCS1D01G222600 chr3B 100.000 28 0 0 1972 1999 612032667 612032694 1.100000e-02 52.8
36 TraesCS1D01G222600 chr5D 77.076 301 46 17 5731 6009 559609542 559609243 1.070000e-32 152.0
37 TraesCS1D01G222600 chr7A 91.860 86 3 1 6028 6109 487476609 487476524 3.900000e-22 117.0
38 TraesCS1D01G222600 chr6D 77.612 201 39 6 5736 5931 454123420 454123619 3.900000e-22 117.0
39 TraesCS1D01G222600 chr3D 96.429 56 2 0 6108 6163 370619129 370619074 6.580000e-15 93.5
40 TraesCS1D01G222600 chrUn 91.837 49 4 0 2696 2744 479646316 479646364 1.110000e-07 69.4
41 TraesCS1D01G222600 chr4D 92.683 41 2 1 1959 1999 416760825 416760864 2.400000e-04 58.4
42 TraesCS1D01G222600 chr2A 100.000 29 0 0 1971 1999 511115595 511115567 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G222600 chr1D 310139599 310145761 6162 False 11382.000000 11382 100.00000 1 6163 1 chr1D.!!$F1 6162
1 TraesCS1D01G222600 chr3A 128522612 128528875 6263 True 1304.166667 3517 91.96600 1 5740 6 chr3A.!!$R2 5739
2 TraesCS1D01G222600 chr1B 420231539 420236689 5150 False 1730.500000 3203 93.22125 657 5527 4 chr1B.!!$F1 4870
3 TraesCS1D01G222600 chr1A 389868334 389875348 7014 False 1290.333333 2791 92.22950 1 5730 6 chr1A.!!$F1 5729

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
95 103 0.313987 TTGCTGACGTGACGACTCAT 59.686 50.0 13.70 0.00 0.00 2.90 F
1711 1978 0.034380 ACGTCCGATTCTGAGGGAGA 60.034 55.0 0.00 0.00 0.00 3.71 F
2583 2941 0.028505 GCTGCATGCACCGAGTAATG 59.971 55.0 18.46 4.73 42.31 1.90 F
2584 2942 0.028505 CTGCATGCACCGAGTAATGC 59.971 55.0 18.46 12.74 44.49 3.56 F
3705 4446 0.039165 GCTTTGGAAAGGTTGGCTCG 60.039 55.0 1.45 0.00 36.53 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2033 2317 0.029567 AGAGATTCGATCGCCGTCAC 59.970 55.000 11.09 6.86 39.75 3.67 R
3616 4357 0.393820 CTTTGCCATTTGCCTGTGGT 59.606 50.000 0.00 0.00 40.16 4.16 R
4373 6054 0.034186 GGACCATGGGAGCATTCACA 60.034 55.000 18.09 0.00 41.95 3.58 R
4447 6136 1.468914 GTCAGAAGAACGATTTGCCCC 59.531 52.381 0.00 0.00 0.00 5.80 R
5677 7388 0.385751 TCGCTTGCTATCCTTCTCCG 59.614 55.000 0.00 0.00 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 92 2.954753 GCGGTGGAGTTTGCTGACG 61.955 63.158 0.00 0.00 0.00 4.35
90 98 0.596600 GGAGTTTGCTGACGTGACGA 60.597 55.000 13.70 0.00 0.00 4.20
95 103 0.313987 TTGCTGACGTGACGACTCAT 59.686 50.000 13.70 0.00 0.00 2.90
150 158 2.256158 CGGACCACGTCAACGCTA 59.744 61.111 1.81 0.00 44.43 4.26
155 163 0.885879 ACCACGTCAACGCTATCAGA 59.114 50.000 1.81 0.00 44.43 3.27
157 165 1.402325 CCACGTCAACGCTATCAGACA 60.402 52.381 1.81 0.00 44.43 3.41
355 364 2.126850 CGACAGAACGCTCGAGCA 60.127 61.111 34.69 0.00 42.21 4.26
356 365 2.429351 CGACAGAACGCTCGAGCAC 61.429 63.158 34.69 24.17 42.21 4.40
399 408 1.385773 TGGCTCTGGGCATGGGATA 60.386 57.895 0.21 0.00 43.20 2.59
605 828 2.039405 CCGTCTTCCGACTCCGACT 61.039 63.158 0.00 0.00 39.56 4.18
609 832 4.926173 CGTCTTCCGACTCCGACTAGGA 62.926 59.091 0.00 0.00 43.12 2.94
613 836 1.427592 CCGACTCCGACTAGGACGAC 61.428 65.000 11.99 0.00 45.98 4.34
617 840 3.494336 CCGACTAGGACGACGCGT 61.494 66.667 13.85 13.85 45.00 6.01
627 851 3.467119 CGACGCGTCGTTTCCCAG 61.467 66.667 43.93 20.83 46.99 4.45
647 871 1.995066 TGATCCCTGGCACGTGGAT 60.995 57.895 18.88 11.03 41.54 3.41
672 896 6.386927 TGATGGAGGTTTATACAATCTGGAGT 59.613 38.462 0.00 0.00 0.00 3.85
685 909 3.391506 TCTGGAGTCATCTGTGTTGTG 57.608 47.619 0.00 0.00 0.00 3.33
686 910 2.700371 TCTGGAGTCATCTGTGTTGTGT 59.300 45.455 0.00 0.00 0.00 3.72
687 911 3.134623 TCTGGAGTCATCTGTGTTGTGTT 59.865 43.478 0.00 0.00 0.00 3.32
689 913 3.206150 GGAGTCATCTGTGTTGTGTTGT 58.794 45.455 0.00 0.00 0.00 3.32
690 914 4.141824 TGGAGTCATCTGTGTTGTGTTGTA 60.142 41.667 0.00 0.00 0.00 2.41
692 916 4.765273 AGTCATCTGTGTTGTGTTGTACA 58.235 39.130 0.00 0.00 37.56 2.90
693 917 4.811024 AGTCATCTGTGTTGTGTTGTACAG 59.189 41.667 0.00 0.00 41.10 2.74
694 918 4.024893 GTCATCTGTGTTGTGTTGTACAGG 60.025 45.833 0.00 0.00 41.10 4.00
695 919 2.912771 TCTGTGTTGTGTTGTACAGGG 58.087 47.619 0.00 0.00 41.10 4.45
696 920 1.333619 CTGTGTTGTGTTGTACAGGGC 59.666 52.381 0.00 0.00 41.10 5.19
697 921 1.065053 TGTGTTGTGTTGTACAGGGCT 60.065 47.619 0.00 0.00 41.10 5.19
777 1001 7.229306 TCAGGTCTTAATCCATGTATTGCATTC 59.771 37.037 0.00 0.00 35.19 2.67
951 1176 4.214327 CGCCTCCCTCTCTTCCGC 62.214 72.222 0.00 0.00 0.00 5.54
963 1195 4.082463 CCTCTCTTCCGCTAACCAGATATC 60.082 50.000 0.00 0.00 0.00 1.63
964 1196 4.470602 TCTCTTCCGCTAACCAGATATCA 58.529 43.478 5.32 0.00 0.00 2.15
965 1197 4.893524 TCTCTTCCGCTAACCAGATATCAA 59.106 41.667 5.32 0.00 0.00 2.57
966 1198 5.540337 TCTCTTCCGCTAACCAGATATCAAT 59.460 40.000 5.32 0.00 0.00 2.57
967 1199 6.042093 TCTCTTCCGCTAACCAGATATCAATT 59.958 38.462 5.32 0.00 0.00 2.32
968 1200 7.232737 TCTCTTCCGCTAACCAGATATCAATTA 59.767 37.037 5.32 0.00 0.00 1.40
969 1201 7.907389 TCTTCCGCTAACCAGATATCAATTAT 58.093 34.615 5.32 0.00 0.00 1.28
1069 1304 4.116328 CCTTCACGAGAGCGCCGA 62.116 66.667 11.49 0.00 42.48 5.54
1610 1845 1.821061 CTCAAGGCCGGTGAGTGACT 61.821 60.000 24.09 0.00 38.16 3.41
1706 1973 3.312697 TGACATCTACGTCCGATTCTGAG 59.687 47.826 0.00 0.00 34.88 3.35
1711 1978 0.034380 ACGTCCGATTCTGAGGGAGA 60.034 55.000 0.00 0.00 0.00 3.71
1880 2150 7.709613 GTGTATAAGACGGACACCTTTCAATAT 59.290 37.037 0.00 0.00 37.99 1.28
1886 2156 5.812286 ACGGACACCTTTCAATATTTAGGT 58.188 37.500 7.53 7.53 41.58 3.08
1916 2195 6.422776 CTAGAAAGCAACGGTTGTATCAAT 57.577 37.500 20.92 7.16 0.00 2.57
1919 2198 5.240623 AGAAAGCAACGGTTGTATCAATGAA 59.759 36.000 20.92 0.00 0.00 2.57
1928 2207 7.562135 ACGGTTGTATCAATGAAGGTATTAGT 58.438 34.615 0.00 0.00 0.00 2.24
1936 2215 6.582636 TCAATGAAGGTATTAGTCAGCGAAT 58.417 36.000 0.00 0.00 0.00 3.34
1941 2220 6.312918 TGAAGGTATTAGTCAGCGAATCAAAC 59.687 38.462 0.00 0.00 0.00 2.93
1942 2221 4.804139 AGGTATTAGTCAGCGAATCAAACG 59.196 41.667 0.00 0.00 0.00 3.60
1971 2255 7.559590 GATGAAGCGGCATCCTATAATATTT 57.440 36.000 1.45 0.00 38.95 1.40
1974 2258 8.492673 TGAAGCGGCATCCTATAATATTTTAG 57.507 34.615 1.45 6.08 0.00 1.85
1975 2259 8.100791 TGAAGCGGCATCCTATAATATTTTAGT 58.899 33.333 1.45 0.00 0.00 2.24
1976 2260 7.849804 AGCGGCATCCTATAATATTTTAGTG 57.150 36.000 1.45 5.95 0.00 2.74
1977 2261 7.620880 AGCGGCATCCTATAATATTTTAGTGA 58.379 34.615 1.45 8.49 0.00 3.41
1978 2262 8.267894 AGCGGCATCCTATAATATTTTAGTGAT 58.732 33.333 1.45 9.90 0.00 3.06
1979 2263 8.552034 GCGGCATCCTATAATATTTTAGTGATC 58.448 37.037 10.77 0.00 0.00 2.92
1980 2264 9.823647 CGGCATCCTATAATATTTTAGTGATCT 57.176 33.333 10.77 0.00 0.00 2.75
2019 2303 1.882623 GGGAGTTCCACAAAAGCTCAG 59.117 52.381 0.00 0.00 37.91 3.35
2044 2328 1.421410 AATTCTGCGTGACGGCGATC 61.421 55.000 16.62 8.31 35.06 3.69
2114 2398 1.515954 CACGTCGCTAGGACCCAAT 59.484 57.895 0.00 0.00 42.99 3.16
2294 2579 4.543590 AAGGGTAGTGATCAGTCAAGTG 57.456 45.455 6.25 0.00 35.80 3.16
2300 2585 6.127310 GGGTAGTGATCAGTCAAGTGATAACT 60.127 42.308 17.94 17.94 46.50 2.24
2316 2601 5.064834 GTGATAACTACACAAAAGGGCTAGC 59.935 44.000 6.04 6.04 38.05 3.42
2325 2610 0.389757 AAAGGGCTAGCGCTAGTAGC 59.610 55.000 37.37 29.20 41.96 3.58
2343 2628 5.907207 AGTAGCACGTATGATCAATTGAGT 58.093 37.500 14.54 2.12 0.00 3.41
2374 2662 5.284079 GTGTGCTTGCTTTGGGATTATATG 58.716 41.667 0.00 0.00 0.00 1.78
2380 2668 5.518848 TGCTTTGGGATTATATGTTGCTG 57.481 39.130 0.00 0.00 0.00 4.41
2575 2933 2.539547 CGTTGTAATAGCTGCATGCACC 60.540 50.000 18.46 11.17 45.94 5.01
2576 2934 1.298602 TGTAATAGCTGCATGCACCG 58.701 50.000 18.46 9.68 45.94 4.94
2578 2936 1.528586 GTAATAGCTGCATGCACCGAG 59.471 52.381 18.46 8.43 45.94 4.63
2579 2937 0.107508 AATAGCTGCATGCACCGAGT 60.108 50.000 18.46 2.80 45.94 4.18
2580 2938 0.752658 ATAGCTGCATGCACCGAGTA 59.247 50.000 18.46 4.30 45.94 2.59
2581 2939 0.534873 TAGCTGCATGCACCGAGTAA 59.465 50.000 18.46 0.00 45.94 2.24
2582 2940 0.107508 AGCTGCATGCACCGAGTAAT 60.108 50.000 18.46 0.00 45.94 1.89
2583 2941 0.028505 GCTGCATGCACCGAGTAATG 59.971 55.000 18.46 4.73 42.31 1.90
2584 2942 0.028505 CTGCATGCACCGAGTAATGC 59.971 55.000 18.46 12.74 44.49 3.56
2585 2943 0.392863 TGCATGCACCGAGTAATGCT 60.393 50.000 18.46 0.00 44.53 3.79
2587 2945 1.528586 GCATGCACCGAGTAATGCTAG 59.471 52.381 14.21 0.00 41.71 3.42
2589 2947 2.579207 TGCACCGAGTAATGCTAGAC 57.421 50.000 0.00 0.00 42.55 2.59
2591 2949 2.194271 GCACCGAGTAATGCTAGACAC 58.806 52.381 0.00 0.00 38.84 3.67
2592 2950 2.451132 CACCGAGTAATGCTAGACACG 58.549 52.381 0.00 0.00 0.00 4.49
2594 2952 1.113253 CGAGTAATGCTAGACACGCG 58.887 55.000 3.53 3.53 0.00 6.01
2595 2953 1.478137 GAGTAATGCTAGACACGCGG 58.522 55.000 12.47 1.27 0.00 6.46
2597 2955 1.065701 AGTAATGCTAGACACGCGGAG 59.934 52.381 12.47 4.93 0.00 4.63
2598 2956 1.065102 GTAATGCTAGACACGCGGAGA 59.935 52.381 12.47 0.00 0.00 3.71
2600 2958 0.747255 ATGCTAGACACGCGGAGATT 59.253 50.000 12.47 0.00 0.00 2.40
2601 2959 0.530744 TGCTAGACACGCGGAGATTT 59.469 50.000 12.47 0.00 0.00 2.17
2602 2960 1.746787 TGCTAGACACGCGGAGATTTA 59.253 47.619 12.47 0.00 0.00 1.40
2603 2961 2.117910 GCTAGACACGCGGAGATTTAC 58.882 52.381 12.47 0.00 0.00 2.01
2604 2962 2.223525 GCTAGACACGCGGAGATTTACT 60.224 50.000 12.47 0.68 0.00 2.24
2605 2963 3.734293 GCTAGACACGCGGAGATTTACTT 60.734 47.826 12.47 0.00 0.00 2.24
2606 2964 4.497006 GCTAGACACGCGGAGATTTACTTA 60.497 45.833 12.47 0.00 0.00 2.24
2607 2965 4.445452 AGACACGCGGAGATTTACTTAA 57.555 40.909 12.47 0.00 0.00 1.85
2608 2966 4.421948 AGACACGCGGAGATTTACTTAAG 58.578 43.478 12.47 0.00 0.00 1.85
2609 2967 3.518590 ACACGCGGAGATTTACTTAAGG 58.481 45.455 12.47 0.00 0.00 2.69
2610 2968 3.194116 ACACGCGGAGATTTACTTAAGGA 59.806 43.478 12.47 0.00 0.00 3.36
2612 2970 4.809426 CACGCGGAGATTTACTTAAGGATT 59.191 41.667 12.47 0.00 0.00 3.01
2614 2972 5.878669 ACGCGGAGATTTACTTAAGGATTTT 59.121 36.000 12.47 0.00 0.00 1.82
2615 2973 7.010738 CACGCGGAGATTTACTTAAGGATTTTA 59.989 37.037 12.47 0.00 0.00 1.52
2616 2974 7.010830 ACGCGGAGATTTACTTAAGGATTTTAC 59.989 37.037 12.47 0.00 0.00 2.01
2618 2976 7.517893 GCGGAGATTTACTTAAGGATTTTACGG 60.518 40.741 7.53 0.17 0.00 4.02
2619 2977 7.042254 CGGAGATTTACTTAAGGATTTTACGGG 60.042 40.741 7.53 0.00 0.00 5.28
2620 2978 7.228108 GGAGATTTACTTAAGGATTTTACGGGG 59.772 40.741 7.53 0.00 0.00 5.73
2621 2979 7.636579 AGATTTACTTAAGGATTTTACGGGGT 58.363 34.615 7.53 0.00 0.00 4.95
2622 2980 8.771286 AGATTTACTTAAGGATTTTACGGGGTA 58.229 33.333 7.53 0.00 0.00 3.69
2624 2982 8.560355 TTTACTTAAGGATTTTACGGGGTAAC 57.440 34.615 7.53 0.00 0.00 2.50
2625 2983 6.378661 ACTTAAGGATTTTACGGGGTAACT 57.621 37.500 7.53 0.00 0.00 2.24
2627 2985 7.917003 ACTTAAGGATTTTACGGGGTAACTAA 58.083 34.615 7.53 0.00 0.00 2.24
2629 2987 8.791327 TTAAGGATTTTACGGGGTAACTAAAG 57.209 34.615 0.00 0.00 0.00 1.85
2630 2988 6.378661 AGGATTTTACGGGGTAACTAAAGT 57.621 37.500 0.00 0.00 0.00 2.66
2631 2989 6.175471 AGGATTTTACGGGGTAACTAAAGTG 58.825 40.000 0.00 0.00 0.00 3.16
2633 2991 5.559148 TTTTACGGGGTAACTAAAGTGGA 57.441 39.130 0.00 0.00 0.00 4.02
2634 2992 4.535526 TTACGGGGTAACTAAAGTGGAC 57.464 45.455 0.00 0.00 0.00 4.02
2637 2995 2.038820 CGGGGTAACTAAAGTGGACCAA 59.961 50.000 13.61 0.00 36.87 3.67
2638 2996 3.307904 CGGGGTAACTAAAGTGGACCAAT 60.308 47.826 13.61 0.00 36.87 3.16
2639 2997 4.080975 CGGGGTAACTAAAGTGGACCAATA 60.081 45.833 13.61 0.00 36.87 1.90
2641 2999 5.190330 GGGGTAACTAAAGTGGACCAATAGA 59.810 44.000 14.15 0.00 36.87 1.98
2644 3002 7.832685 GGGTAACTAAAGTGGACCAATAGAATT 59.167 37.037 14.15 0.62 36.87 2.17
2648 3006 9.892130 AACTAAAGTGGACCAATAGAATTAGAG 57.108 33.333 14.84 0.00 0.00 2.43
2649 3007 9.268282 ACTAAAGTGGACCAATAGAATTAGAGA 57.732 33.333 14.84 0.00 0.00 3.10
2654 3012 8.875168 AGTGGACCAATAGAATTAGAGATTAGG 58.125 37.037 0.00 0.00 0.00 2.69
2655 3013 8.097662 GTGGACCAATAGAATTAGAGATTAGGG 58.902 40.741 0.00 0.00 0.00 3.53
2656 3014 7.237679 TGGACCAATAGAATTAGAGATTAGGGG 59.762 40.741 0.00 0.00 0.00 4.79
2669 3061 5.482175 AGAGATTAGGGGTGTATCAGTATGC 59.518 44.000 0.00 0.00 34.76 3.14
2744 3406 8.208718 TGAATGTCATGGTTGCTATTTAGTAC 57.791 34.615 0.00 0.00 0.00 2.73
2746 3408 8.438676 AATGTCATGGTTGCTATTTAGTACTC 57.561 34.615 0.00 0.00 0.00 2.59
3072 3755 5.580911 GCACTTATGAAGCCAAACAAAAG 57.419 39.130 0.00 0.00 0.00 2.27
3085 3772 1.473258 ACAAAAGCACTGTCAAGGCA 58.527 45.000 0.00 0.00 0.00 4.75
3260 3948 1.628846 GGTGTAACAGAGTGTGGGGAT 59.371 52.381 0.00 0.00 39.98 3.85
3263 3951 4.080526 GGTGTAACAGAGTGTGGGGATATT 60.081 45.833 0.00 0.00 39.98 1.28
3307 4048 2.819608 TGGGTTCTTCACAATTAGCAGC 59.180 45.455 0.00 0.00 0.00 5.25
3342 4083 6.500684 AGCTGTGTCAAATCGATTGTATTT 57.499 33.333 12.25 0.00 40.11 1.40
3381 4122 5.390613 ACATTGTCGCATAAACTTTACAGC 58.609 37.500 0.00 0.00 0.00 4.40
3411 4152 3.596214 TCCTTCGTCTGGAATTACTTGC 58.404 45.455 0.00 0.00 33.26 4.01
3465 4206 4.081254 AGTGCTAGATCATCTGTTTGAGCA 60.081 41.667 5.13 5.13 34.50 4.26
3466 4207 4.815308 GTGCTAGATCATCTGTTTGAGCAT 59.185 41.667 11.42 0.00 34.50 3.79
3467 4208 5.050227 GTGCTAGATCATCTGTTTGAGCATC 60.050 44.000 11.42 3.72 34.50 3.91
3468 4209 5.163332 TGCTAGATCATCTGTTTGAGCATCT 60.163 40.000 5.13 0.00 34.50 2.90
3469 4210 5.406175 GCTAGATCATCTGTTTGAGCATCTC 59.594 44.000 0.00 0.00 34.50 2.75
3470 4211 4.370049 AGATCATCTGTTTGAGCATCTCG 58.630 43.478 0.00 0.00 34.50 4.04
3471 4212 2.274437 TCATCTGTTTGAGCATCTCGC 58.726 47.619 0.00 0.00 42.91 5.03
3472 4213 2.004733 CATCTGTTTGAGCATCTCGCA 58.995 47.619 0.00 0.00 46.13 5.10
3473 4214 2.168326 TCTGTTTGAGCATCTCGCAA 57.832 45.000 0.00 0.00 46.13 4.85
3474 4215 2.493035 TCTGTTTGAGCATCTCGCAAA 58.507 42.857 0.00 0.00 46.13 3.68
3475 4216 2.877786 TCTGTTTGAGCATCTCGCAAAA 59.122 40.909 0.00 0.00 44.08 2.44
3476 4217 3.314913 TCTGTTTGAGCATCTCGCAAAAA 59.685 39.130 0.00 0.00 44.08 1.94
3500 4241 2.739943 AGATCATCTGTTCGAGGGACA 58.260 47.619 0.00 0.00 0.00 4.02
3533 4274 6.594744 GGGACGGAGGGAATAACTTTTAATA 58.405 40.000 0.00 0.00 0.00 0.98
3705 4446 0.039165 GCTTTGGAAAGGTTGGCTCG 60.039 55.000 1.45 0.00 36.53 5.03
3750 4491 2.860009 CTAGGGATGCATGTGATTGCT 58.140 47.619 2.46 0.00 43.18 3.91
3774 4515 4.301027 CCCTATGCTCCGGCCGAC 62.301 72.222 30.73 16.57 37.74 4.79
3957 4698 2.584970 GGCGGCGTGATCGATGAA 60.585 61.111 9.37 0.00 39.71 2.57
4032 4773 4.071423 GCTTCCTCTTCTCAGCTTTCTTT 58.929 43.478 0.00 0.00 0.00 2.52
4033 4774 4.154015 GCTTCCTCTTCTCAGCTTTCTTTC 59.846 45.833 0.00 0.00 0.00 2.62
4234 5915 4.025979 GTCTTGGCTACGATAAATGTTCCG 60.026 45.833 0.00 0.00 0.00 4.30
4235 5916 3.804786 TGGCTACGATAAATGTTCCGA 57.195 42.857 0.00 0.00 0.00 4.55
4236 5917 4.330944 TGGCTACGATAAATGTTCCGAT 57.669 40.909 0.00 0.00 0.00 4.18
4279 5960 3.764434 TGCTACTCTTTCTGAGGTACCAG 59.236 47.826 15.94 3.49 46.72 4.00
4337 6018 0.516877 TCGAAATTGCTGAAGCCGTG 59.483 50.000 0.00 0.00 41.18 4.94
4450 6139 4.594920 AGTGATAGACTGTGATTATGGGGG 59.405 45.833 0.00 0.00 31.75 5.40
4457 6146 2.294233 CTGTGATTATGGGGGCAAATCG 59.706 50.000 0.00 0.00 33.28 3.34
4467 6156 1.468914 GGGGCAAATCGTTCTTCTGAC 59.531 52.381 0.00 0.00 0.00 3.51
4511 6200 1.380524 TGTCAGAGCTAGCTCCGTAC 58.619 55.000 35.58 29.19 43.70 3.67
4805 6494 1.043673 AGTCCATCCAGGTACGCCTC 61.044 60.000 0.00 0.00 44.97 4.70
4865 6554 2.202570 GGGGACATCGTCGTCGTG 60.203 66.667 1.33 2.91 36.73 4.35
5170 6859 2.158608 TCCTCGAGCTATGATGGACAGA 60.159 50.000 6.99 0.00 0.00 3.41
5171 6860 2.030363 CCTCGAGCTATGATGGACAGAC 60.030 54.545 6.99 0.00 0.00 3.51
5172 6861 2.620585 CTCGAGCTATGATGGACAGACA 59.379 50.000 0.00 0.00 0.00 3.41
5173 6862 2.620585 TCGAGCTATGATGGACAGACAG 59.379 50.000 0.00 0.00 0.00 3.51
5174 6863 2.753296 GAGCTATGATGGACAGACAGC 58.247 52.381 0.00 0.00 0.00 4.40
5322 7020 6.647212 AGAACGATGTGTGTGTATGTTATG 57.353 37.500 0.00 0.00 0.00 1.90
5334 7032 6.312672 GTGTGTATGTTATGATGCTGTGTGTA 59.687 38.462 0.00 0.00 0.00 2.90
5377 7075 4.801330 TGTTTGTGGAGAGTCGTATCAT 57.199 40.909 0.00 0.00 0.00 2.45
5378 7076 5.907866 TGTTTGTGGAGAGTCGTATCATA 57.092 39.130 0.00 0.00 0.00 2.15
5379 7077 5.891451 TGTTTGTGGAGAGTCGTATCATAG 58.109 41.667 0.00 0.00 0.00 2.23
5450 7148 8.970691 AACTTGCAATACAGACACAAATATTC 57.029 30.769 0.00 0.00 0.00 1.75
5483 7185 8.821686 AATGGTGATGATTTACCTGTCATTTA 57.178 30.769 0.00 0.00 37.84 1.40
5677 7388 2.380084 TAACCGGTGAACATCAGCTC 57.620 50.000 8.52 0.00 42.30 4.09
5698 7409 2.546795 CGGAGAAGGATAGCAAGCGAAT 60.547 50.000 0.00 0.00 0.00 3.34
5699 7410 3.471680 GGAGAAGGATAGCAAGCGAATT 58.528 45.455 0.00 0.00 0.00 2.17
5738 7449 2.060326 TCGTAAGAGCAACTCCAACG 57.940 50.000 11.14 11.14 45.01 4.10
5740 7451 1.336517 CGTAAGAGCAACTCCAACGGA 60.337 52.381 10.02 0.00 36.31 4.69
5741 7452 2.674177 CGTAAGAGCAACTCCAACGGAT 60.674 50.000 10.02 0.00 36.31 4.18
5742 7453 3.428452 CGTAAGAGCAACTCCAACGGATA 60.428 47.826 10.02 0.00 36.31 2.59
5743 7454 3.914426 AAGAGCAACTCCAACGGATAT 57.086 42.857 0.00 0.00 0.00 1.63
5744 7455 3.460857 AGAGCAACTCCAACGGATATC 57.539 47.619 0.00 0.00 0.00 1.63
5745 7456 2.128035 GAGCAACTCCAACGGATATCG 58.872 52.381 0.00 0.00 45.88 2.92
5746 7457 1.754803 AGCAACTCCAACGGATATCGA 59.245 47.619 0.00 0.00 42.43 3.59
5747 7458 2.365617 AGCAACTCCAACGGATATCGAT 59.634 45.455 2.16 2.16 42.43 3.59
5748 7459 3.131396 GCAACTCCAACGGATATCGATT 58.869 45.455 1.71 0.00 42.43 3.34
5749 7460 3.560068 GCAACTCCAACGGATATCGATTT 59.440 43.478 1.71 0.00 42.43 2.17
5750 7461 4.035208 GCAACTCCAACGGATATCGATTTT 59.965 41.667 1.71 0.00 42.43 1.82
5751 7462 5.501715 CAACTCCAACGGATATCGATTTTG 58.498 41.667 1.71 0.16 42.43 2.44
5752 7463 4.766375 ACTCCAACGGATATCGATTTTGT 58.234 39.130 1.71 0.00 42.43 2.83
5753 7464 4.809426 ACTCCAACGGATATCGATTTTGTC 59.191 41.667 1.71 0.00 42.43 3.18
5754 7465 4.124238 TCCAACGGATATCGATTTTGTCC 58.876 43.478 1.71 6.03 42.43 4.02
5756 7467 2.856091 CGGATATCGATTTTGTCCGC 57.144 50.000 20.44 0.00 44.27 5.54
5757 7468 2.131972 CGGATATCGATTTTGTCCGCA 58.868 47.619 20.44 0.00 44.27 5.69
5758 7469 2.736721 CGGATATCGATTTTGTCCGCAT 59.263 45.455 20.44 0.83 44.27 4.73
5759 7470 3.186409 CGGATATCGATTTTGTCCGCATT 59.814 43.478 20.44 0.00 44.27 3.56
5760 7471 4.319477 CGGATATCGATTTTGTCCGCATTT 60.319 41.667 20.44 0.00 44.27 2.32
5761 7472 5.519722 GGATATCGATTTTGTCCGCATTTT 58.480 37.500 1.71 0.00 0.00 1.82
5762 7473 5.399301 GGATATCGATTTTGTCCGCATTTTG 59.601 40.000 1.71 0.00 0.00 2.44
5763 7474 3.634568 TCGATTTTGTCCGCATTTTGT 57.365 38.095 0.00 0.00 0.00 2.83
5764 7475 3.971150 TCGATTTTGTCCGCATTTTGTT 58.029 36.364 0.00 0.00 0.00 2.83
5765 7476 3.978217 TCGATTTTGTCCGCATTTTGTTC 59.022 39.130 0.00 0.00 0.00 3.18
5766 7477 3.733224 CGATTTTGTCCGCATTTTGTTCA 59.267 39.130 0.00 0.00 0.00 3.18
5767 7478 4.385447 CGATTTTGTCCGCATTTTGTTCAT 59.615 37.500 0.00 0.00 0.00 2.57
5768 7479 5.107530 CGATTTTGTCCGCATTTTGTTCATT 60.108 36.000 0.00 0.00 0.00 2.57
5769 7480 6.563753 CGATTTTGTCCGCATTTTGTTCATTT 60.564 34.615 0.00 0.00 0.00 2.32
5770 7481 5.401033 TTTGTCCGCATTTTGTTCATTTG 57.599 34.783 0.00 0.00 0.00 2.32
5771 7482 3.388308 TGTCCGCATTTTGTTCATTTGG 58.612 40.909 0.00 0.00 0.00 3.28
5772 7483 2.736192 GTCCGCATTTTGTTCATTTGGG 59.264 45.455 0.00 0.00 0.00 4.12
5773 7484 2.366916 TCCGCATTTTGTTCATTTGGGT 59.633 40.909 0.00 0.00 0.00 4.51
5774 7485 2.736192 CCGCATTTTGTTCATTTGGGTC 59.264 45.455 0.00 0.00 0.00 4.46
5775 7486 2.408032 CGCATTTTGTTCATTTGGGTCG 59.592 45.455 0.00 0.00 0.00 4.79
5776 7487 2.157474 GCATTTTGTTCATTTGGGTCGC 59.843 45.455 0.00 0.00 0.00 5.19
5777 7488 2.517650 TTTTGTTCATTTGGGTCGCC 57.482 45.000 0.00 0.00 0.00 5.54
5778 7489 0.676736 TTTGTTCATTTGGGTCGCCC 59.323 50.000 7.87 7.87 45.71 6.13
5822 7533 3.658757 TTTATTTGGGTCTGCAAGTGC 57.341 42.857 0.00 0.00 42.50 4.40
5823 7534 1.164411 TATTTGGGTCTGCAAGTGCG 58.836 50.000 0.00 0.00 45.83 5.34
5824 7535 2.146073 ATTTGGGTCTGCAAGTGCGC 62.146 55.000 0.00 0.00 45.83 6.09
5828 7539 3.286751 GTCTGCAAGTGCGCCCAA 61.287 61.111 4.18 0.00 45.83 4.12
5829 7540 3.286751 TCTGCAAGTGCGCCCAAC 61.287 61.111 4.18 0.00 45.83 3.77
5830 7541 4.688419 CTGCAAGTGCGCCCAACG 62.688 66.667 4.18 0.00 45.83 4.10
5833 7544 4.326766 CAAGTGCGCCCAACGGTG 62.327 66.667 4.18 0.00 43.93 4.94
5843 7554 4.263572 CAACGGTGGCCAGACCCA 62.264 66.667 5.11 0.00 37.83 4.51
5844 7555 3.256960 AACGGTGGCCAGACCCAT 61.257 61.111 5.11 0.00 37.20 4.00
5845 7556 2.840753 AACGGTGGCCAGACCCATT 61.841 57.895 5.11 0.00 37.20 3.16
5846 7557 2.035626 CGGTGGCCAGACCCATTT 59.964 61.111 5.11 0.00 37.20 2.32
5847 7558 1.606313 CGGTGGCCAGACCCATTTT 60.606 57.895 5.11 0.00 37.20 1.82
5848 7559 1.595093 CGGTGGCCAGACCCATTTTC 61.595 60.000 5.11 0.00 37.20 2.29
5849 7560 1.595093 GGTGGCCAGACCCATTTTCG 61.595 60.000 5.11 0.00 37.20 3.46
5850 7561 0.608035 GTGGCCAGACCCATTTTCGA 60.608 55.000 5.11 0.00 37.20 3.71
5851 7562 0.608035 TGGCCAGACCCATTTTCGAC 60.608 55.000 0.00 0.00 37.83 4.20
5852 7563 0.608035 GGCCAGACCCATTTTCGACA 60.608 55.000 0.00 0.00 0.00 4.35
5853 7564 1.463674 GCCAGACCCATTTTCGACAT 58.536 50.000 0.00 0.00 0.00 3.06
5854 7565 1.133025 GCCAGACCCATTTTCGACATG 59.867 52.381 0.00 0.00 0.00 3.21
5855 7566 2.436417 CCAGACCCATTTTCGACATGT 58.564 47.619 0.00 0.00 0.00 3.21
5856 7567 2.420022 CCAGACCCATTTTCGACATGTC 59.580 50.000 16.21 16.21 0.00 3.06
5857 7568 2.420022 CAGACCCATTTTCGACATGTCC 59.580 50.000 20.03 2.90 0.00 4.02
5858 7569 1.396996 GACCCATTTTCGACATGTCCG 59.603 52.381 20.03 14.58 0.00 4.79
5859 7570 0.098728 CCCATTTTCGACATGTCCGC 59.901 55.000 20.03 0.00 0.00 5.54
5860 7571 0.098728 CCATTTTCGACATGTCCGCC 59.901 55.000 20.03 0.00 0.00 6.13
5861 7572 0.098728 CATTTTCGACATGTCCGCCC 59.901 55.000 20.03 0.00 0.00 6.13
5862 7573 0.035439 ATTTTCGACATGTCCGCCCT 60.035 50.000 20.03 0.00 0.00 5.19
5863 7574 0.953471 TTTTCGACATGTCCGCCCTG 60.953 55.000 20.03 5.10 0.00 4.45
5864 7575 1.822114 TTTCGACATGTCCGCCCTGA 61.822 55.000 20.03 7.47 0.00 3.86
5865 7576 2.501223 TTCGACATGTCCGCCCTGAC 62.501 60.000 20.03 0.00 35.77 3.51
5870 7581 4.713946 TGTCCGCCCTGACATTTC 57.286 55.556 0.00 0.00 40.22 2.17
5871 7582 1.002624 TGTCCGCCCTGACATTTCC 60.003 57.895 0.00 0.00 40.22 3.13
5872 7583 1.299976 GTCCGCCCTGACATTTCCT 59.700 57.895 0.00 0.00 35.29 3.36
5873 7584 0.744771 GTCCGCCCTGACATTTCCTC 60.745 60.000 0.00 0.00 35.29 3.71
5874 7585 1.198094 TCCGCCCTGACATTTCCTCA 61.198 55.000 0.00 0.00 0.00 3.86
5875 7586 0.322456 CCGCCCTGACATTTCCTCAA 60.322 55.000 0.00 0.00 0.00 3.02
5876 7587 1.533625 CGCCCTGACATTTCCTCAAA 58.466 50.000 0.00 0.00 0.00 2.69
5877 7588 1.200020 CGCCCTGACATTTCCTCAAAC 59.800 52.381 0.00 0.00 0.00 2.93
5878 7589 2.238521 GCCCTGACATTTCCTCAAACA 58.761 47.619 0.00 0.00 0.00 2.83
5879 7590 2.029918 GCCCTGACATTTCCTCAAACAC 60.030 50.000 0.00 0.00 0.00 3.32
5880 7591 2.226437 CCCTGACATTTCCTCAAACACG 59.774 50.000 0.00 0.00 0.00 4.49
5881 7592 2.878406 CCTGACATTTCCTCAAACACGT 59.122 45.455 0.00 0.00 0.00 4.49
5882 7593 4.062293 CCTGACATTTCCTCAAACACGTA 58.938 43.478 0.00 0.00 0.00 3.57
5883 7594 4.152402 CCTGACATTTCCTCAAACACGTAG 59.848 45.833 0.00 0.00 0.00 3.51
5884 7595 3.496884 TGACATTTCCTCAAACACGTAGC 59.503 43.478 0.00 0.00 0.00 3.58
5885 7596 3.472652 ACATTTCCTCAAACACGTAGCA 58.527 40.909 0.00 0.00 0.00 3.49
5886 7597 3.498397 ACATTTCCTCAAACACGTAGCAG 59.502 43.478 0.00 0.00 0.00 4.24
5887 7598 2.163818 TTCCTCAAACACGTAGCAGG 57.836 50.000 0.00 0.00 0.00 4.85
5888 7599 0.320421 TCCTCAAACACGTAGCAGGC 60.320 55.000 0.00 0.00 0.00 4.85
5889 7600 0.602638 CCTCAAACACGTAGCAGGCA 60.603 55.000 0.00 0.00 0.00 4.75
5890 7601 0.792640 CTCAAACACGTAGCAGGCAG 59.207 55.000 0.00 0.00 0.00 4.85
5891 7602 0.602638 TCAAACACGTAGCAGGCAGG 60.603 55.000 0.00 0.00 0.00 4.85
5892 7603 1.302511 AAACACGTAGCAGGCAGGG 60.303 57.895 0.00 0.00 0.00 4.45
5893 7604 3.901797 AACACGTAGCAGGCAGGGC 62.902 63.158 0.00 0.00 0.00 5.19
5894 7605 4.393155 CACGTAGCAGGCAGGGCA 62.393 66.667 0.00 0.00 0.00 5.36
5895 7606 4.087892 ACGTAGCAGGCAGGGCAG 62.088 66.667 0.00 0.00 0.00 4.85
5896 7607 4.845580 CGTAGCAGGCAGGGCAGG 62.846 72.222 0.00 0.00 0.00 4.85
5897 7608 4.496336 GTAGCAGGCAGGGCAGGG 62.496 72.222 0.00 0.00 0.00 4.45
5898 7609 4.739356 TAGCAGGCAGGGCAGGGA 62.739 66.667 0.00 0.00 0.00 4.20
5907 7618 4.792804 GGGCAGGGAGCTCACAGC 62.793 72.222 24.10 24.10 45.63 4.40
5916 7627 3.716006 GCTCACAGCGCGCAAAGA 61.716 61.111 35.10 24.39 0.00 2.52
5917 7628 2.473378 CTCACAGCGCGCAAAGAG 59.527 61.111 35.10 28.92 0.00 2.85
5918 7629 3.020026 CTCACAGCGCGCAAAGAGG 62.020 63.158 35.10 18.40 0.00 3.69
5919 7630 4.748679 CACAGCGCGCAAAGAGGC 62.749 66.667 35.10 0.32 0.00 4.70
6037 7748 2.662596 TGGAGCCGCCACAACTAG 59.337 61.111 0.00 0.00 43.33 2.57
6038 7749 2.820037 GGAGCCGCCACAACTAGC 60.820 66.667 0.00 0.00 36.34 3.42
6039 7750 2.266055 GAGCCGCCACAACTAGCT 59.734 61.111 0.00 0.00 36.25 3.32
6040 7751 1.515954 GAGCCGCCACAACTAGCTA 59.484 57.895 0.00 0.00 32.97 3.32
6041 7752 0.528684 GAGCCGCCACAACTAGCTAG 60.529 60.000 19.44 19.44 32.97 3.42
6042 7753 2.174319 GCCGCCACAACTAGCTAGC 61.174 63.158 20.91 6.62 0.00 3.42
6043 7754 1.517832 CCGCCACAACTAGCTAGCT 59.482 57.895 23.12 23.12 0.00 3.32
6044 7755 0.744874 CCGCCACAACTAGCTAGCTA 59.255 55.000 22.85 22.85 0.00 3.32
6055 7766 4.663444 CTAGCTAGCATGCGGGAC 57.337 61.111 18.83 3.40 38.13 4.46
6056 7767 1.742146 CTAGCTAGCATGCGGGACA 59.258 57.895 18.83 0.00 38.13 4.02
6057 7768 0.319728 CTAGCTAGCATGCGGGACAT 59.680 55.000 18.83 0.00 40.66 3.06
6064 7775 2.827190 ATGCGGGACATGCAGCAG 60.827 61.111 0.00 0.00 46.98 4.24
6068 7779 3.446570 GGGACATGCAGCAGCCAC 61.447 66.667 0.00 0.00 41.13 5.01
6069 7780 2.674033 GGACATGCAGCAGCCACA 60.674 61.111 0.00 0.00 41.13 4.17
6070 7781 2.270257 GGACATGCAGCAGCCACAA 61.270 57.895 0.00 0.00 41.13 3.33
6071 7782 1.080974 GACATGCAGCAGCCACAAC 60.081 57.895 0.00 0.00 41.13 3.32
6072 7783 1.521450 GACATGCAGCAGCCACAACT 61.521 55.000 0.00 0.00 41.13 3.16
6073 7784 0.250858 ACATGCAGCAGCCACAACTA 60.251 50.000 0.00 0.00 41.13 2.24
6074 7785 0.450583 CATGCAGCAGCCACAACTAG 59.549 55.000 0.00 0.00 41.13 2.57
6075 7786 1.310933 ATGCAGCAGCCACAACTAGC 61.311 55.000 0.00 0.00 41.13 3.42
6076 7787 1.673665 GCAGCAGCCACAACTAGCT 60.674 57.895 0.00 0.00 40.89 3.32
6077 7788 0.391661 GCAGCAGCCACAACTAGCTA 60.392 55.000 0.00 0.00 37.18 3.32
6078 7789 1.649664 CAGCAGCCACAACTAGCTAG 58.350 55.000 19.44 19.44 37.18 3.42
6079 7790 0.107945 AGCAGCCACAACTAGCTAGC 60.108 55.000 20.91 6.62 37.18 3.42
6080 7791 0.391661 GCAGCCACAACTAGCTAGCA 60.392 55.000 20.91 1.89 37.18 3.49
6081 7792 1.745141 GCAGCCACAACTAGCTAGCAT 60.745 52.381 20.91 7.25 37.18 3.79
6082 7793 1.938577 CAGCCACAACTAGCTAGCATG 59.061 52.381 20.91 20.44 37.18 4.06
6083 7794 0.659957 GCCACAACTAGCTAGCATGC 59.340 55.000 20.91 10.51 0.00 4.06
6084 7795 0.933097 CCACAACTAGCTAGCATGCG 59.067 55.000 20.91 13.24 38.13 4.73
6085 7796 0.302890 CACAACTAGCTAGCATGCGC 59.697 55.000 20.91 10.95 38.13 6.09
6086 7797 1.148157 ACAACTAGCTAGCATGCGCG 61.148 55.000 20.91 0.00 45.49 6.86
6087 7798 0.871592 CAACTAGCTAGCATGCGCGA 60.872 55.000 20.91 6.12 45.49 5.87
6088 7799 0.872021 AACTAGCTAGCATGCGCGAC 60.872 55.000 20.91 0.88 45.49 5.19
6089 7800 2.353492 TAGCTAGCATGCGCGACG 60.353 61.111 18.83 0.00 45.49 5.12
6108 7819 4.157120 GGCCGCCATCCAGTACGT 62.157 66.667 3.91 0.00 0.00 3.57
6109 7820 2.890474 GCCGCCATCCAGTACGTG 60.890 66.667 0.00 0.00 0.00 4.49
6110 7821 2.577059 CCGCCATCCAGTACGTGT 59.423 61.111 0.00 0.00 0.00 4.49
6111 7822 1.809619 CCGCCATCCAGTACGTGTG 60.810 63.158 0.00 0.00 0.00 3.82
6112 7823 1.809619 CGCCATCCAGTACGTGTGG 60.810 63.158 11.62 11.62 36.28 4.17
6113 7824 1.449601 GCCATCCAGTACGTGTGGG 60.450 63.158 16.40 6.86 35.58 4.61
6114 7825 1.449601 CCATCCAGTACGTGTGGGC 60.450 63.158 16.40 0.00 35.58 5.36
6115 7826 1.809619 CATCCAGTACGTGTGGGCG 60.810 63.158 16.40 6.49 35.58 6.13
6117 7828 2.501223 ATCCAGTACGTGTGGGCGTG 62.501 60.000 16.40 0.00 45.33 5.34
6118 7829 2.736995 CAGTACGTGTGGGCGTGG 60.737 66.667 0.00 0.00 45.33 4.94
6119 7830 4.675029 AGTACGTGTGGGCGTGGC 62.675 66.667 0.00 0.00 45.33 5.01
6129 7840 3.723348 GGCGTGGCCGTTGAAGAC 61.723 66.667 0.00 0.00 39.62 3.01
6139 7850 2.842320 GTTGAAGACGAGGAAGCCC 58.158 57.895 0.00 0.00 0.00 5.19
6140 7851 0.673956 GTTGAAGACGAGGAAGCCCC 60.674 60.000 0.00 0.00 0.00 5.80
6162 7873 4.530857 GGCGACGACCATGGAGGG 62.531 72.222 21.47 9.33 43.89 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.073716 AACTCCGACCCCCACAACA 61.074 57.895 0.00 0.00 0.00 3.33
84 92 0.738975 TCCGGATGATGAGTCGTCAC 59.261 55.000 17.24 10.90 41.30 3.67
90 98 4.630644 ATAAATGCTCCGGATGATGAGT 57.369 40.909 3.57 0.00 0.00 3.41
95 103 3.469008 ACGAATAAATGCTCCGGATGA 57.531 42.857 3.57 0.00 0.00 2.92
150 158 1.208052 CCGGATGGAGTTGTGTCTGAT 59.792 52.381 0.00 0.00 37.49 2.90
155 163 1.677552 GACCCGGATGGAGTTGTGT 59.322 57.895 0.73 0.00 37.49 3.72
157 165 0.976073 ATCGACCCGGATGGAGTTGT 60.976 55.000 0.73 0.00 37.49 3.32
180 189 0.865769 GACGCAATGTTGAAGACGGT 59.134 50.000 0.00 0.00 0.00 4.83
335 344 2.868196 TCGAGCGTTCTGTCGAGG 59.132 61.111 0.00 0.00 40.19 4.63
363 372 1.000938 CCAGCAGACAAAAGTCTTGGC 60.001 52.381 4.06 2.60 28.34 4.52
399 408 3.809013 GGTGGGGATGTGGGCGAT 61.809 66.667 0.00 0.00 0.00 4.58
446 455 2.610859 TCCTCCACCCTTCCAGCC 60.611 66.667 0.00 0.00 0.00 4.85
596 819 2.005220 CGTCGTCCTAGTCGGAGTC 58.995 63.158 5.07 0.00 44.20 3.36
613 836 3.411351 CACCTGGGAAACGACGCG 61.411 66.667 3.53 3.53 0.00 6.01
617 840 1.988015 GGGATCACCTGGGAAACGA 59.012 57.895 0.00 0.00 35.85 3.85
627 851 2.436646 CACGTGCCAGGGATCACC 60.437 66.667 0.82 0.00 40.67 4.02
647 871 6.386927 ACTCCAGATTGTATAAACCTCCATCA 59.613 38.462 0.00 0.00 0.00 3.07
672 896 4.126437 CCTGTACAACACAACACAGATGA 58.874 43.478 0.00 0.00 40.67 2.92
685 909 2.545742 CCAAAGCAAAGCCCTGTACAAC 60.546 50.000 0.00 0.00 0.00 3.32
686 910 1.686052 CCAAAGCAAAGCCCTGTACAA 59.314 47.619 0.00 0.00 0.00 2.41
687 911 1.327303 CCAAAGCAAAGCCCTGTACA 58.673 50.000 0.00 0.00 0.00 2.90
689 913 0.541764 CCCCAAAGCAAAGCCCTGTA 60.542 55.000 0.00 0.00 0.00 2.74
690 914 1.838396 CCCCAAAGCAAAGCCCTGT 60.838 57.895 0.00 0.00 0.00 4.00
692 916 1.735455 TACCCCCAAAGCAAAGCCCT 61.735 55.000 0.00 0.00 0.00 5.19
693 917 1.229051 TACCCCCAAAGCAAAGCCC 60.229 57.895 0.00 0.00 0.00 5.19
694 918 0.541998 AGTACCCCCAAAGCAAAGCC 60.542 55.000 0.00 0.00 0.00 4.35
695 919 1.272490 GAAGTACCCCCAAAGCAAAGC 59.728 52.381 0.00 0.00 0.00 3.51
696 920 2.820197 GAGAAGTACCCCCAAAGCAAAG 59.180 50.000 0.00 0.00 0.00 2.77
697 921 2.490168 GGAGAAGTACCCCCAAAGCAAA 60.490 50.000 0.00 0.00 0.00 3.68
951 1176 6.313905 GCCGGTGATAATTGATATCTGGTTAG 59.686 42.308 1.90 0.00 40.96 2.34
982 1214 2.079158 CATGTTCAATCAGGCTCGTGT 58.921 47.619 0.00 0.00 0.00 4.49
1610 1845 3.127376 CACCATCACAAATGAAGCGATCA 59.873 43.478 0.00 0.00 43.67 2.92
1691 1958 1.211212 TCTCCCTCAGAATCGGACGTA 59.789 52.381 0.00 0.00 0.00 3.57
1706 1973 0.533085 GGTTAATCTGCCGCTCTCCC 60.533 60.000 0.00 0.00 0.00 4.30
1711 1978 1.904287 TTTGTGGTTAATCTGCCGCT 58.096 45.000 0.00 0.00 36.33 5.52
1807 2077 1.067776 ACCTTTCTCTCGCACCTAACG 60.068 52.381 0.00 0.00 0.00 3.18
1842 2112 8.301720 GTCCGTCTTATACACAATATGTCCATA 58.698 37.037 0.00 0.00 42.09 2.74
1858 2128 9.326413 CTAAATATTGAAAGGTGTCCGTCTTAT 57.674 33.333 0.00 0.00 0.00 1.73
1897 2167 5.446143 TTCATTGATACAACCGTTGCTTT 57.554 34.783 11.29 0.00 0.00 3.51
1899 2169 3.440173 CCTTCATTGATACAACCGTTGCT 59.560 43.478 11.29 0.00 0.00 3.91
1900 2170 3.190535 ACCTTCATTGATACAACCGTTGC 59.809 43.478 11.29 0.00 0.00 4.17
1901 2171 6.677781 ATACCTTCATTGATACAACCGTTG 57.322 37.500 9.80 9.80 0.00 4.10
1902 2172 8.044908 ACTAATACCTTCATTGATACAACCGTT 58.955 33.333 0.00 0.00 0.00 4.44
1904 2174 7.709182 TGACTAATACCTTCATTGATACAACCG 59.291 37.037 0.00 0.00 0.00 4.44
1905 2175 8.958119 TGACTAATACCTTCATTGATACAACC 57.042 34.615 0.00 0.00 0.00 3.77
1908 2187 6.923508 CGCTGACTAATACCTTCATTGATACA 59.076 38.462 0.00 0.00 0.00 2.29
1916 2195 5.592104 TGATTCGCTGACTAATACCTTCA 57.408 39.130 0.00 0.00 0.00 3.02
1919 2198 4.804139 CGTTTGATTCGCTGACTAATACCT 59.196 41.667 0.00 0.00 0.00 3.08
1928 2207 0.953471 CCACCCGTTTGATTCGCTGA 60.953 55.000 0.00 0.00 0.00 4.26
1936 2215 0.953471 CGCTTCATCCACCCGTTTGA 60.953 55.000 0.00 0.00 0.00 2.69
1941 2220 4.776322 TGCCGCTTCATCCACCCG 62.776 66.667 0.00 0.00 0.00 5.28
1942 2221 2.124151 ATGCCGCTTCATCCACCC 60.124 61.111 0.00 0.00 0.00 4.61
1981 2265 9.117183 GGAACTCCCAAATATAAGAACGTTTAT 57.883 33.333 0.46 0.00 34.14 1.40
1982 2266 8.102047 TGGAACTCCCAAATATAAGAACGTTTA 58.898 33.333 0.46 0.00 43.29 2.01
1983 2267 6.943718 TGGAACTCCCAAATATAAGAACGTTT 59.056 34.615 0.46 0.00 43.29 3.60
1984 2268 6.478129 TGGAACTCCCAAATATAAGAACGTT 58.522 36.000 0.00 0.00 43.29 3.99
1985 2269 6.057321 TGGAACTCCCAAATATAAGAACGT 57.943 37.500 0.00 0.00 43.29 3.99
1998 2282 1.214175 TGAGCTTTTGTGGAACTCCCA 59.786 47.619 0.00 0.00 44.25 4.37
1999 2283 1.882623 CTGAGCTTTTGTGGAACTCCC 59.117 52.381 0.00 0.00 38.04 4.30
2000 2284 2.851195 TCTGAGCTTTTGTGGAACTCC 58.149 47.619 0.00 0.00 38.04 3.85
2001 2285 3.879892 ACTTCTGAGCTTTTGTGGAACTC 59.120 43.478 0.00 0.00 38.04 3.01
2002 2286 3.891049 ACTTCTGAGCTTTTGTGGAACT 58.109 40.909 0.00 0.00 38.04 3.01
2003 2287 5.751243 TTACTTCTGAGCTTTTGTGGAAC 57.249 39.130 0.00 0.00 37.35 3.62
2004 2288 6.959639 ATTTACTTCTGAGCTTTTGTGGAA 57.040 33.333 0.00 0.00 0.00 3.53
2005 2289 6.772716 AGAATTTACTTCTGAGCTTTTGTGGA 59.227 34.615 0.00 0.00 42.76 4.02
2019 2303 2.474032 GCCGTCACGCAGAATTTACTTC 60.474 50.000 0.00 0.00 0.00 3.01
2033 2317 0.029567 AGAGATTCGATCGCCGTCAC 59.970 55.000 11.09 6.86 39.75 3.67
2044 2328 1.480137 AGGCTCCAACAGAGAGATTCG 59.520 52.381 0.00 0.00 46.50 3.34
2074 2358 1.593006 CGGTGTTCATAGGACGCAATC 59.407 52.381 0.00 0.00 0.00 2.67
2114 2398 1.005450 AGAAAAATGCGGGCCCTAGAA 59.995 47.619 22.43 0.00 0.00 2.10
2294 2579 4.270325 CGCTAGCCCTTTTGTGTAGTTATC 59.730 45.833 9.66 0.00 0.00 1.75
2300 2585 0.323629 AGCGCTAGCCCTTTTGTGTA 59.676 50.000 8.99 0.00 46.67 2.90
2316 2601 3.537793 TGATCATACGTGCTACTAGCG 57.462 47.619 0.00 0.00 46.26 4.26
2325 2610 6.317088 AGCAAAACTCAATTGATCATACGTG 58.683 36.000 8.96 2.92 0.00 4.49
2343 2628 0.455410 AAGCAAGCACACGAGCAAAA 59.545 45.000 0.00 0.00 36.85 2.44
2483 2776 4.706476 CCTGAAAATTGACCTGCTAATGGA 59.294 41.667 0.00 0.00 0.00 3.41
2493 2786 2.820197 GGAGTCACCCTGAAAATTGACC 59.180 50.000 0.00 0.00 39.39 4.02
2575 2933 1.113253 CGCGTGTCTAGCATTACTCG 58.887 55.000 0.00 0.00 36.12 4.18
2576 2934 1.065102 TCCGCGTGTCTAGCATTACTC 59.935 52.381 4.92 0.00 34.19 2.59
2578 2936 1.065102 TCTCCGCGTGTCTAGCATTAC 59.935 52.381 4.92 0.00 34.19 1.89
2579 2937 1.385528 TCTCCGCGTGTCTAGCATTA 58.614 50.000 4.92 0.00 34.19 1.90
2580 2938 0.747255 ATCTCCGCGTGTCTAGCATT 59.253 50.000 4.92 0.00 34.19 3.56
2581 2939 0.747255 AATCTCCGCGTGTCTAGCAT 59.253 50.000 4.92 0.00 34.19 3.79
2582 2940 0.530744 AAATCTCCGCGTGTCTAGCA 59.469 50.000 4.92 0.00 34.19 3.49
2583 2941 2.117910 GTAAATCTCCGCGTGTCTAGC 58.882 52.381 4.92 0.00 0.00 3.42
2584 2942 3.694535 AGTAAATCTCCGCGTGTCTAG 57.305 47.619 4.92 0.00 0.00 2.43
2585 2943 5.449588 CCTTAAGTAAATCTCCGCGTGTCTA 60.450 44.000 4.92 0.00 0.00 2.59
2587 2945 3.550678 CCTTAAGTAAATCTCCGCGTGTC 59.449 47.826 4.92 0.00 0.00 3.67
2589 2947 3.777478 TCCTTAAGTAAATCTCCGCGTG 58.223 45.455 4.92 0.00 0.00 5.34
2591 2949 5.986004 AAATCCTTAAGTAAATCTCCGCG 57.014 39.130 0.00 0.00 0.00 6.46
2592 2950 7.342942 CGTAAAATCCTTAAGTAAATCTCCGC 58.657 38.462 0.97 0.00 0.00 5.54
2594 2952 7.228108 CCCCGTAAAATCCTTAAGTAAATCTCC 59.772 40.741 0.97 0.00 0.00 3.71
2595 2953 7.772292 ACCCCGTAAAATCCTTAAGTAAATCTC 59.228 37.037 0.97 0.00 0.00 2.75
2597 2955 7.870509 ACCCCGTAAAATCCTTAAGTAAATC 57.129 36.000 0.97 0.00 0.00 2.17
2598 2956 9.177608 GTTACCCCGTAAAATCCTTAAGTAAAT 57.822 33.333 0.97 0.00 29.42 1.40
2600 2958 7.917003 AGTTACCCCGTAAAATCCTTAAGTAA 58.083 34.615 0.97 0.00 29.42 2.24
2601 2959 7.494922 AGTTACCCCGTAAAATCCTTAAGTA 57.505 36.000 0.97 0.00 29.42 2.24
2602 2960 6.378661 AGTTACCCCGTAAAATCCTTAAGT 57.621 37.500 0.97 0.00 29.42 2.24
2603 2961 8.791327 TTTAGTTACCCCGTAAAATCCTTAAG 57.209 34.615 0.00 0.00 29.42 1.85
2604 2962 8.382405 ACTTTAGTTACCCCGTAAAATCCTTAA 58.618 33.333 0.00 0.00 29.42 1.85
2605 2963 7.823799 CACTTTAGTTACCCCGTAAAATCCTTA 59.176 37.037 0.00 0.00 29.42 2.69
2606 2964 6.656270 CACTTTAGTTACCCCGTAAAATCCTT 59.344 38.462 0.00 0.00 29.42 3.36
2607 2965 6.175471 CACTTTAGTTACCCCGTAAAATCCT 58.825 40.000 0.00 0.00 29.42 3.24
2608 2966 5.355071 CCACTTTAGTTACCCCGTAAAATCC 59.645 44.000 0.00 0.00 29.42 3.01
2609 2967 6.092670 GTCCACTTTAGTTACCCCGTAAAATC 59.907 42.308 0.00 0.00 29.42 2.17
2610 2968 5.939883 GTCCACTTTAGTTACCCCGTAAAAT 59.060 40.000 0.00 0.00 29.42 1.82
2612 2970 4.262851 GGTCCACTTTAGTTACCCCGTAAA 60.263 45.833 1.38 0.00 29.42 2.01
2614 2972 2.831526 GGTCCACTTTAGTTACCCCGTA 59.168 50.000 1.38 0.00 0.00 4.02
2615 2973 1.625315 GGTCCACTTTAGTTACCCCGT 59.375 52.381 1.38 0.00 0.00 5.28
2616 2974 1.624813 TGGTCCACTTTAGTTACCCCG 59.375 52.381 8.11 0.00 32.97 5.73
2618 2976 6.303903 TCTATTGGTCCACTTTAGTTACCC 57.696 41.667 0.00 0.00 32.97 3.69
2619 2977 8.803397 AATTCTATTGGTCCACTTTAGTTACC 57.197 34.615 0.00 4.82 33.99 2.85
2622 2980 9.892130 CTCTAATTCTATTGGTCCACTTTAGTT 57.108 33.333 0.00 0.00 0.00 2.24
2629 2987 8.097662 CCCTAATCTCTAATTCTATTGGTCCAC 58.902 40.741 0.00 0.00 0.00 4.02
2630 2988 7.237679 CCCCTAATCTCTAATTCTATTGGTCCA 59.762 40.741 0.00 0.00 0.00 4.02
2631 2989 7.237887 ACCCCTAATCTCTAATTCTATTGGTCC 59.762 40.741 0.00 0.00 0.00 4.46
2633 2991 7.572861 ACACCCCTAATCTCTAATTCTATTGGT 59.427 37.037 0.00 0.00 0.00 3.67
2634 2992 7.978925 ACACCCCTAATCTCTAATTCTATTGG 58.021 38.462 0.00 0.00 0.00 3.16
2638 2996 9.535170 CTGATACACCCCTAATCTCTAATTCTA 57.465 37.037 0.00 0.00 0.00 2.10
2639 2997 8.013667 ACTGATACACCCCTAATCTCTAATTCT 58.986 37.037 0.00 0.00 0.00 2.40
2641 2999 9.845214 ATACTGATACACCCCTAATCTCTAATT 57.155 33.333 0.00 0.00 0.00 1.40
2644 3002 6.663953 GCATACTGATACACCCCTAATCTCTA 59.336 42.308 0.00 0.00 0.00 2.43
2646 3004 5.482175 AGCATACTGATACACCCCTAATCTC 59.518 44.000 0.00 0.00 0.00 2.75
2647 3005 5.407049 AGCATACTGATACACCCCTAATCT 58.593 41.667 0.00 0.00 0.00 2.40
2648 3006 5.746990 AGCATACTGATACACCCCTAATC 57.253 43.478 0.00 0.00 0.00 1.75
2669 3061 4.213270 TCATTTTCCGCTGTAACAGTTCAG 59.787 41.667 0.00 0.00 33.43 3.02
2682 3074 6.972328 ACATATACACATTGTTCATTTTCCGC 59.028 34.615 0.00 0.00 0.00 5.54
2744 3406 1.151668 CTCCACTTTCGTTGCTGGAG 58.848 55.000 0.51 0.51 42.97 3.86
2746 3408 2.163818 TACTCCACTTTCGTTGCTGG 57.836 50.000 0.00 0.00 0.00 4.85
2911 3586 2.338577 ACTGAGGTATCATGCTTGGC 57.661 50.000 0.00 0.00 34.12 4.52
3072 3755 2.666619 CGAATTTCTGCCTTGACAGTGC 60.667 50.000 0.00 0.00 38.84 4.40
3085 3772 4.384056 CAGCCTACATCCATCGAATTTCT 58.616 43.478 0.00 0.00 0.00 2.52
3342 4083 6.257849 GCGACAATGTAAACATGGAAGATAGA 59.742 38.462 4.47 0.00 36.56 1.98
3434 4175 9.890629 AAACAGATGATCTAGCACTAAAATACA 57.109 29.630 0.00 0.00 0.00 2.29
3476 4217 4.938226 GTCCCTCGAACAGATGATCTTTTT 59.062 41.667 0.00 0.00 0.00 1.94
3477 4218 4.020218 TGTCCCTCGAACAGATGATCTTTT 60.020 41.667 0.00 0.00 0.00 2.27
3478 4219 3.515502 TGTCCCTCGAACAGATGATCTTT 59.484 43.478 0.00 0.00 0.00 2.52
3479 4220 3.099905 TGTCCCTCGAACAGATGATCTT 58.900 45.455 0.00 0.00 0.00 2.40
3480 4221 2.739943 TGTCCCTCGAACAGATGATCT 58.260 47.619 0.00 0.00 0.00 2.75
3481 4222 3.118956 ACTTGTCCCTCGAACAGATGATC 60.119 47.826 0.00 0.00 0.00 2.92
3482 4223 2.834549 ACTTGTCCCTCGAACAGATGAT 59.165 45.455 0.00 0.00 0.00 2.45
3483 4224 2.248248 ACTTGTCCCTCGAACAGATGA 58.752 47.619 0.00 0.00 0.00 2.92
3484 4225 2.751166 ACTTGTCCCTCGAACAGATG 57.249 50.000 0.00 0.00 0.00 2.90
3485 4226 5.420409 GAATTACTTGTCCCTCGAACAGAT 58.580 41.667 0.00 0.00 0.00 2.90
3486 4227 4.617530 CGAATTACTTGTCCCTCGAACAGA 60.618 45.833 0.00 0.00 0.00 3.41
3487 4228 3.612860 CGAATTACTTGTCCCTCGAACAG 59.387 47.826 0.00 0.00 0.00 3.16
3488 4229 3.581755 CGAATTACTTGTCCCTCGAACA 58.418 45.455 0.00 0.00 0.00 3.18
3489 4230 2.928116 CCGAATTACTTGTCCCTCGAAC 59.072 50.000 0.00 0.00 0.00 3.95
3490 4231 2.093869 CCCGAATTACTTGTCCCTCGAA 60.094 50.000 0.00 0.00 0.00 3.71
3491 4232 1.479323 CCCGAATTACTTGTCCCTCGA 59.521 52.381 0.00 0.00 0.00 4.04
3492 4233 1.479323 TCCCGAATTACTTGTCCCTCG 59.521 52.381 0.00 0.00 0.00 4.63
3493 4234 2.737679 CGTCCCGAATTACTTGTCCCTC 60.738 54.545 0.00 0.00 0.00 4.30
3494 4235 1.206371 CGTCCCGAATTACTTGTCCCT 59.794 52.381 0.00 0.00 0.00 4.20
3495 4236 1.648504 CGTCCCGAATTACTTGTCCC 58.351 55.000 0.00 0.00 0.00 4.46
3496 4237 1.205417 TCCGTCCCGAATTACTTGTCC 59.795 52.381 0.00 0.00 0.00 4.02
3500 4241 0.828677 CCCTCCGTCCCGAATTACTT 59.171 55.000 0.00 0.00 0.00 2.24
3612 4353 1.342819 TGCCATTTGCCTGTGGTAAAC 59.657 47.619 2.20 0.00 39.83 2.01
3616 4357 0.393820 CTTTGCCATTTGCCTGTGGT 59.606 50.000 0.00 0.00 40.16 4.16
3705 4446 2.202946 GCTCGCCTTGCTACCTCC 60.203 66.667 0.00 0.00 0.00 4.30
3750 4491 1.121407 CCGGAGCATAGGGGTCATGA 61.121 60.000 0.00 0.00 45.90 3.07
3831 4572 3.326006 GCATATGGAGGGAGATGAAGTCA 59.674 47.826 4.56 0.00 0.00 3.41
3975 4716 1.600916 AACTTTGCCGGAGTCCAGC 60.601 57.895 10.69 10.69 0.00 4.85
4234 5915 6.324819 CAAGTGGTTTGATTACATCCACATC 58.675 40.000 13.74 0.00 44.93 3.06
4235 5916 5.336690 GCAAGTGGTTTGATTACATCCACAT 60.337 40.000 13.74 0.62 44.93 3.21
4236 5917 4.022416 GCAAGTGGTTTGATTACATCCACA 60.022 41.667 13.74 0.00 44.93 4.17
4261 5942 1.546476 CGCTGGTACCTCAGAAAGAGT 59.454 52.381 14.36 0.00 43.12 3.24
4279 5960 4.389576 CGGCAAGTTCAGGTGCGC 62.390 66.667 0.00 0.00 41.85 6.09
4373 6054 0.034186 GGACCATGGGAGCATTCACA 60.034 55.000 18.09 0.00 41.95 3.58
4447 6136 1.468914 GTCAGAAGAACGATTTGCCCC 59.531 52.381 0.00 0.00 0.00 5.80
4450 6139 3.743396 ACAGAGTCAGAAGAACGATTTGC 59.257 43.478 0.00 0.00 0.00 3.68
4457 6146 4.752604 GGGAAGAAACAGAGTCAGAAGAAC 59.247 45.833 0.00 0.00 0.00 3.01
4467 6156 4.974399 ACCTGTAAAGGGAAGAAACAGAG 58.026 43.478 3.35 0.00 39.93 3.35
4511 6200 1.741770 CTTCTCCGCCAGGGAAACG 60.742 63.158 0.00 0.00 46.61 3.60
4805 6494 2.661537 TTGGACTGCACGTGCGAG 60.662 61.111 33.22 29.79 45.83 5.03
4865 6554 2.267961 CCGTACTTGACCCTGCCC 59.732 66.667 0.00 0.00 0.00 5.36
5192 6881 3.579709 CGATGCCACTTATTCTAGCGAT 58.420 45.455 0.00 0.00 0.00 4.58
5322 7020 2.736721 ACACGTTGATACACACAGCATC 59.263 45.455 0.00 0.00 0.00 3.91
5334 7032 2.100631 GCTAGGCGCACACGTTGAT 61.101 57.895 10.83 0.00 42.83 2.57
5450 7148 8.777413 CAGGTAAATCATCACCATTACATACAG 58.223 37.037 0.00 0.00 37.28 2.74
5495 7198 7.410485 GCATCCTGCTGTCTTTATAAGTAAAC 58.590 38.462 0.00 0.00 40.96 2.01
5636 7347 2.307686 TCATTACCCTGGAGTTTCCCAC 59.692 50.000 0.00 0.00 35.03 4.61
5677 7388 0.385751 TCGCTTGCTATCCTTCTCCG 59.614 55.000 0.00 0.00 0.00 4.63
5716 7427 2.987821 GTTGGAGTTGCTCTTACGAGTC 59.012 50.000 0.00 0.00 39.53 3.36
5718 7429 1.986378 CGTTGGAGTTGCTCTTACGAG 59.014 52.381 13.76 0.00 38.46 4.18
5730 7441 4.766375 ACAAAATCGATATCCGTTGGAGT 58.234 39.130 0.00 0.00 39.75 3.85
5733 7444 3.059868 CGGACAAAATCGATATCCGTTGG 60.060 47.826 22.50 6.04 45.73 3.77
5738 7449 4.749245 AATGCGGACAAAATCGATATCC 57.251 40.909 0.00 3.14 0.00 2.59
5740 7451 5.890334 ACAAAATGCGGACAAAATCGATAT 58.110 33.333 0.00 0.00 0.00 1.63
5741 7452 5.303747 ACAAAATGCGGACAAAATCGATA 57.696 34.783 0.00 0.00 0.00 2.92
5742 7453 4.173036 ACAAAATGCGGACAAAATCGAT 57.827 36.364 0.00 0.00 0.00 3.59
5743 7454 3.634568 ACAAAATGCGGACAAAATCGA 57.365 38.095 0.00 0.00 0.00 3.59
5744 7455 3.733224 TGAACAAAATGCGGACAAAATCG 59.267 39.130 0.00 0.00 0.00 3.34
5745 7456 5.844301 ATGAACAAAATGCGGACAAAATC 57.156 34.783 0.00 0.00 0.00 2.17
5746 7457 6.428799 CAAATGAACAAAATGCGGACAAAAT 58.571 32.000 0.00 0.00 0.00 1.82
5747 7458 5.220739 CCAAATGAACAAAATGCGGACAAAA 60.221 36.000 0.00 0.00 0.00 2.44
5748 7459 4.272018 CCAAATGAACAAAATGCGGACAAA 59.728 37.500 0.00 0.00 0.00 2.83
5749 7460 3.806521 CCAAATGAACAAAATGCGGACAA 59.193 39.130 0.00 0.00 0.00 3.18
5750 7461 3.388308 CCAAATGAACAAAATGCGGACA 58.612 40.909 0.00 0.00 0.00 4.02
5751 7462 2.736192 CCCAAATGAACAAAATGCGGAC 59.264 45.455 0.00 0.00 0.00 4.79
5752 7463 2.366916 ACCCAAATGAACAAAATGCGGA 59.633 40.909 0.00 0.00 0.00 5.54
5753 7464 2.736192 GACCCAAATGAACAAAATGCGG 59.264 45.455 0.00 0.00 0.00 5.69
5754 7465 2.408032 CGACCCAAATGAACAAAATGCG 59.592 45.455 0.00 0.00 0.00 4.73
5755 7466 2.157474 GCGACCCAAATGAACAAAATGC 59.843 45.455 0.00 0.00 0.00 3.56
5756 7467 2.736192 GGCGACCCAAATGAACAAAATG 59.264 45.455 0.00 0.00 0.00 2.32
5757 7468 3.038788 GGCGACCCAAATGAACAAAAT 57.961 42.857 0.00 0.00 0.00 1.82
5758 7469 2.517650 GGCGACCCAAATGAACAAAA 57.482 45.000 0.00 0.00 0.00 2.44
5800 7511 4.376146 GCACTTGCAGACCCAAATAAAAA 58.624 39.130 0.00 0.00 41.59 1.94
5801 7512 3.551863 CGCACTTGCAGACCCAAATAAAA 60.552 43.478 1.48 0.00 42.21 1.52
5802 7513 2.030363 CGCACTTGCAGACCCAAATAAA 60.030 45.455 1.48 0.00 42.21 1.40
5803 7514 1.539388 CGCACTTGCAGACCCAAATAA 59.461 47.619 1.48 0.00 42.21 1.40
5804 7515 1.164411 CGCACTTGCAGACCCAAATA 58.836 50.000 1.48 0.00 42.21 1.40
5805 7516 1.959085 CGCACTTGCAGACCCAAAT 59.041 52.632 1.48 0.00 42.21 2.32
5806 7517 2.844451 GCGCACTTGCAGACCCAAA 61.844 57.895 0.30 0.00 42.21 3.28
5807 7518 3.286751 GCGCACTTGCAGACCCAA 61.287 61.111 0.30 0.00 42.21 4.12
5811 7522 3.286751 TTGGGCGCACTTGCAGAC 61.287 61.111 12.74 0.00 42.21 3.51
5812 7523 3.286751 GTTGGGCGCACTTGCAGA 61.287 61.111 12.74 0.00 42.21 4.26
5813 7524 4.688419 CGTTGGGCGCACTTGCAG 62.688 66.667 12.74 0.00 42.21 4.41
5816 7527 4.326766 CACCGTTGGGCGCACTTG 62.327 66.667 12.74 0.00 39.71 3.16
5826 7537 3.567579 ATGGGTCTGGCCACCGTTG 62.568 63.158 0.00 0.00 37.30 4.10
5827 7538 2.366153 AAATGGGTCTGGCCACCGTT 62.366 55.000 11.64 11.64 37.30 4.44
5828 7539 2.366153 AAAATGGGTCTGGCCACCGT 62.366 55.000 0.00 0.00 37.30 4.83
5829 7540 1.595093 GAAAATGGGTCTGGCCACCG 61.595 60.000 0.00 0.00 37.30 4.94
5830 7541 1.595093 CGAAAATGGGTCTGGCCACC 61.595 60.000 0.00 1.41 39.65 4.61
5831 7542 0.608035 TCGAAAATGGGTCTGGCCAC 60.608 55.000 0.00 0.00 39.65 5.01
5832 7543 0.608035 GTCGAAAATGGGTCTGGCCA 60.608 55.000 4.71 4.71 39.65 5.36
5833 7544 0.608035 TGTCGAAAATGGGTCTGGCC 60.608 55.000 0.00 0.00 0.00 5.36
5834 7545 1.133025 CATGTCGAAAATGGGTCTGGC 59.867 52.381 0.00 0.00 0.00 4.85
5835 7546 2.420022 GACATGTCGAAAATGGGTCTGG 59.580 50.000 10.69 0.00 0.00 3.86
5836 7547 2.420022 GGACATGTCGAAAATGGGTCTG 59.580 50.000 19.33 0.00 0.00 3.51
5837 7548 2.711542 GGACATGTCGAAAATGGGTCT 58.288 47.619 19.33 0.00 0.00 3.85
5838 7549 1.396996 CGGACATGTCGAAAATGGGTC 59.603 52.381 19.33 0.87 0.00 4.46
5839 7550 1.448985 CGGACATGTCGAAAATGGGT 58.551 50.000 19.33 0.00 0.00 4.51
5840 7551 0.098728 GCGGACATGTCGAAAATGGG 59.901 55.000 19.33 2.79 0.00 4.00
5841 7552 0.098728 GGCGGACATGTCGAAAATGG 59.901 55.000 19.33 4.07 0.00 3.16
5842 7553 0.098728 GGGCGGACATGTCGAAAATG 59.901 55.000 19.33 7.61 0.00 2.32
5843 7554 0.035439 AGGGCGGACATGTCGAAAAT 60.035 50.000 19.33 2.90 0.00 1.82
5844 7555 0.953471 CAGGGCGGACATGTCGAAAA 60.953 55.000 19.33 0.00 0.00 2.29
5845 7556 1.375396 CAGGGCGGACATGTCGAAA 60.375 57.895 19.33 0.00 0.00 3.46
5846 7557 2.264480 CAGGGCGGACATGTCGAA 59.736 61.111 19.33 0.00 0.00 3.71
5847 7558 2.678580 TCAGGGCGGACATGTCGA 60.679 61.111 19.33 7.23 31.56 4.20
5848 7559 2.509336 GTCAGGGCGGACATGTCG 60.509 66.667 19.33 15.06 37.73 4.35
5849 7560 2.662596 TGTCAGGGCGGACATGTC 59.337 61.111 17.91 17.91 42.56 3.06
5854 7565 0.744771 GAGGAAATGTCAGGGCGGAC 60.745 60.000 1.42 1.42 38.29 4.79
5855 7566 1.198094 TGAGGAAATGTCAGGGCGGA 61.198 55.000 0.00 0.00 0.00 5.54
5856 7567 0.322456 TTGAGGAAATGTCAGGGCGG 60.322 55.000 0.00 0.00 0.00 6.13
5857 7568 1.200020 GTTTGAGGAAATGTCAGGGCG 59.800 52.381 0.00 0.00 0.00 6.13
5858 7569 2.029918 GTGTTTGAGGAAATGTCAGGGC 60.030 50.000 0.00 0.00 0.00 5.19
5859 7570 2.226437 CGTGTTTGAGGAAATGTCAGGG 59.774 50.000 0.00 0.00 0.00 4.45
5860 7571 2.878406 ACGTGTTTGAGGAAATGTCAGG 59.122 45.455 0.00 0.00 0.00 3.86
5861 7572 4.377431 GCTACGTGTTTGAGGAAATGTCAG 60.377 45.833 0.00 0.00 0.00 3.51
5862 7573 3.496884 GCTACGTGTTTGAGGAAATGTCA 59.503 43.478 0.00 0.00 0.00 3.58
5863 7574 3.496884 TGCTACGTGTTTGAGGAAATGTC 59.503 43.478 0.00 0.00 0.00 3.06
5864 7575 3.472652 TGCTACGTGTTTGAGGAAATGT 58.527 40.909 0.00 0.00 0.00 2.71
5865 7576 3.120199 CCTGCTACGTGTTTGAGGAAATG 60.120 47.826 0.00 0.00 0.00 2.32
5866 7577 3.074412 CCTGCTACGTGTTTGAGGAAAT 58.926 45.455 0.00 0.00 0.00 2.17
5867 7578 2.489971 CCTGCTACGTGTTTGAGGAAA 58.510 47.619 0.00 0.00 0.00 3.13
5868 7579 1.876416 GCCTGCTACGTGTTTGAGGAA 60.876 52.381 0.00 0.00 0.00 3.36
5869 7580 0.320421 GCCTGCTACGTGTTTGAGGA 60.320 55.000 0.00 0.00 0.00 3.71
5870 7581 0.602638 TGCCTGCTACGTGTTTGAGG 60.603 55.000 0.00 0.00 0.00 3.86
5871 7582 0.792640 CTGCCTGCTACGTGTTTGAG 59.207 55.000 0.00 0.00 0.00 3.02
5872 7583 0.602638 CCTGCCTGCTACGTGTTTGA 60.603 55.000 0.00 0.00 0.00 2.69
5873 7584 1.577328 CCCTGCCTGCTACGTGTTTG 61.577 60.000 0.00 0.00 0.00 2.93
5874 7585 1.302511 CCCTGCCTGCTACGTGTTT 60.303 57.895 0.00 0.00 0.00 2.83
5875 7586 2.347490 CCCTGCCTGCTACGTGTT 59.653 61.111 0.00 0.00 0.00 3.32
5876 7587 4.394712 GCCCTGCCTGCTACGTGT 62.395 66.667 0.00 0.00 0.00 4.49
5877 7588 4.393155 TGCCCTGCCTGCTACGTG 62.393 66.667 0.00 0.00 0.00 4.49
5878 7589 4.087892 CTGCCCTGCCTGCTACGT 62.088 66.667 0.00 0.00 0.00 3.57
5879 7590 4.845580 CCTGCCCTGCCTGCTACG 62.846 72.222 0.00 0.00 0.00 3.51
5880 7591 4.496336 CCCTGCCCTGCCTGCTAC 62.496 72.222 0.00 0.00 0.00 3.58
5881 7592 4.739356 TCCCTGCCCTGCCTGCTA 62.739 66.667 0.00 0.00 0.00 3.49
5887 7598 4.792804 GTGAGCTCCCTGCCCTGC 62.793 72.222 12.15 0.00 44.23 4.85
5888 7599 3.324930 TGTGAGCTCCCTGCCCTG 61.325 66.667 12.15 0.00 44.23 4.45
5889 7600 3.007920 CTGTGAGCTCCCTGCCCT 61.008 66.667 12.15 0.00 44.23 5.19
5890 7601 4.792804 GCTGTGAGCTCCCTGCCC 62.793 72.222 15.56 0.00 44.23 5.36
5897 7608 3.642008 CTTTGCGCGCTGTGAGCTC 62.642 63.158 33.29 6.82 44.62 4.09
5898 7609 3.720193 CTTTGCGCGCTGTGAGCT 61.720 61.111 33.29 0.00 44.62 4.09
5899 7610 3.642008 CTCTTTGCGCGCTGTGAGC 62.642 63.158 33.29 10.06 44.57 4.26
5900 7611 2.473378 CTCTTTGCGCGCTGTGAG 59.527 61.111 33.29 27.77 0.00 3.51
5901 7612 3.043713 CCTCTTTGCGCGCTGTGA 61.044 61.111 33.29 23.41 0.00 3.58
5902 7613 4.748679 GCCTCTTTGCGCGCTGTG 62.749 66.667 33.29 20.57 0.00 3.66
5950 7661 4.531912 CTTGCTGCGCCATGCTCG 62.532 66.667 4.18 1.83 46.63 5.03
5951 7662 4.849329 GCTTGCTGCGCCATGCTC 62.849 66.667 4.18 0.00 46.63 4.26
6020 7731 2.662596 CTAGTTGTGGCGGCTCCA 59.337 61.111 11.43 3.95 44.18 3.86
6021 7732 1.956629 TAGCTAGTTGTGGCGGCTCC 61.957 60.000 11.43 0.85 34.73 4.70
6022 7733 0.528684 CTAGCTAGTTGTGGCGGCTC 60.529 60.000 12.92 7.43 34.73 4.70
6023 7734 1.517832 CTAGCTAGTTGTGGCGGCT 59.482 57.895 12.92 0.00 34.73 5.52
6024 7735 2.174319 GCTAGCTAGTTGTGGCGGC 61.174 63.158 21.62 0.00 34.73 6.53
6025 7736 0.744874 TAGCTAGCTAGTTGTGGCGG 59.255 55.000 20.67 0.00 34.73 6.13
6026 7737 1.866063 GCTAGCTAGCTAGTTGTGGCG 60.866 57.143 39.05 21.44 45.67 5.69
6027 7738 1.859383 GCTAGCTAGCTAGTTGTGGC 58.141 55.000 39.05 27.07 45.67 5.01
6038 7749 0.319728 ATGTCCCGCATGCTAGCTAG 59.680 55.000 16.84 16.84 36.26 3.42
6039 7750 2.440946 ATGTCCCGCATGCTAGCTA 58.559 52.632 17.13 2.58 36.26 3.32
6040 7751 3.234349 ATGTCCCGCATGCTAGCT 58.766 55.556 17.13 0.00 36.26 3.32
6047 7758 2.827190 CTGCTGCATGTCCCGCAT 60.827 61.111 1.31 0.00 39.02 4.73
6051 7762 3.446570 GTGGCTGCTGCATGTCCC 61.447 66.667 17.89 2.35 41.91 4.46
6052 7763 2.270257 TTGTGGCTGCTGCATGTCC 61.270 57.895 17.89 5.80 41.91 4.02
6053 7764 1.080974 GTTGTGGCTGCTGCATGTC 60.081 57.895 17.89 0.00 41.91 3.06
6054 7765 0.250858 TAGTTGTGGCTGCTGCATGT 60.251 50.000 17.89 0.00 41.91 3.21
6055 7766 0.450583 CTAGTTGTGGCTGCTGCATG 59.549 55.000 17.89 0.00 41.91 4.06
6056 7767 1.310933 GCTAGTTGTGGCTGCTGCAT 61.311 55.000 17.89 0.00 41.91 3.96
6057 7768 1.968017 GCTAGTTGTGGCTGCTGCA 60.968 57.895 17.89 0.88 41.91 4.41
6058 7769 0.391661 TAGCTAGTTGTGGCTGCTGC 60.392 55.000 7.10 7.10 41.39 5.25
6059 7770 1.649664 CTAGCTAGTTGTGGCTGCTG 58.350 55.000 12.92 0.00 41.39 4.41
6060 7771 0.107945 GCTAGCTAGTTGTGGCTGCT 60.108 55.000 21.62 0.00 41.39 4.24
6061 7772 0.391661 TGCTAGCTAGTTGTGGCTGC 60.392 55.000 21.62 5.79 41.39 5.25
6062 7773 1.938577 CATGCTAGCTAGTTGTGGCTG 59.061 52.381 21.62 5.92 41.39 4.85
6063 7774 1.745141 GCATGCTAGCTAGTTGTGGCT 60.745 52.381 21.62 0.00 44.06 4.75
6064 7775 0.659957 GCATGCTAGCTAGTTGTGGC 59.340 55.000 21.62 14.11 0.00 5.01
6065 7776 0.933097 CGCATGCTAGCTAGTTGTGG 59.067 55.000 21.62 11.78 0.00 4.17
6066 7777 0.302890 GCGCATGCTAGCTAGTTGTG 59.697 55.000 21.62 22.93 38.39 3.33
6067 7778 1.148157 CGCGCATGCTAGCTAGTTGT 61.148 55.000 21.62 5.81 39.65 3.32
6068 7779 0.871592 TCGCGCATGCTAGCTAGTTG 60.872 55.000 21.62 18.89 39.65 3.16
6069 7780 0.872021 GTCGCGCATGCTAGCTAGTT 60.872 55.000 21.62 7.51 39.65 2.24
6070 7781 1.299468 GTCGCGCATGCTAGCTAGT 60.299 57.895 21.62 0.00 39.65 2.57
6071 7782 2.360542 CGTCGCGCATGCTAGCTAG 61.361 63.158 16.84 16.84 39.65 3.42
6072 7783 2.353492 CGTCGCGCATGCTAGCTA 60.353 61.111 17.13 1.59 39.65 3.32
6091 7802 4.157120 ACGTACTGGATGGCGGCC 62.157 66.667 13.32 13.32 0.00 6.13
6092 7803 2.890474 CACGTACTGGATGGCGGC 60.890 66.667 0.00 0.00 0.00 6.53
6093 7804 1.809619 CACACGTACTGGATGGCGG 60.810 63.158 0.00 0.00 0.00 6.13
6094 7805 1.809619 CCACACGTACTGGATGGCG 60.810 63.158 5.65 0.00 0.00 5.69
6095 7806 1.449601 CCCACACGTACTGGATGGC 60.450 63.158 12.14 0.00 0.00 4.40
6096 7807 1.449601 GCCCACACGTACTGGATGG 60.450 63.158 12.14 2.81 0.00 3.51
6097 7808 1.809619 CGCCCACACGTACTGGATG 60.810 63.158 12.14 1.88 0.00 3.51
6098 7809 2.280552 ACGCCCACACGTACTGGAT 61.281 57.895 12.14 0.00 46.19 3.41
6099 7810 2.913578 ACGCCCACACGTACTGGA 60.914 61.111 12.14 0.00 46.19 3.86
6100 7811 2.736995 CACGCCCACACGTACTGG 60.737 66.667 4.70 4.70 46.34 4.00
6101 7812 2.736995 CCACGCCCACACGTACTG 60.737 66.667 0.00 0.00 46.34 2.74
6102 7813 4.675029 GCCACGCCCACACGTACT 62.675 66.667 0.00 0.00 46.34 2.73
6112 7823 3.723348 GTCTTCAACGGCCACGCC 61.723 66.667 2.24 0.00 46.75 5.68
6121 7832 0.673956 GGGGCTTCCTCGTCTTCAAC 60.674 60.000 0.00 0.00 0.00 3.18
6122 7833 0.836400 AGGGGCTTCCTCGTCTTCAA 60.836 55.000 0.00 0.00 44.06 2.69
6123 7834 1.229209 AGGGGCTTCCTCGTCTTCA 60.229 57.895 0.00 0.00 44.06 3.02
6124 7835 1.219393 CAGGGGCTTCCTCGTCTTC 59.781 63.158 0.00 0.00 46.12 2.87
6125 7836 1.536662 ACAGGGGCTTCCTCGTCTT 60.537 57.895 0.00 0.00 46.12 3.01
6126 7837 1.985116 GACAGGGGCTTCCTCGTCT 60.985 63.158 14.88 0.00 46.12 4.18
6127 7838 2.579738 GACAGGGGCTTCCTCGTC 59.420 66.667 0.00 5.30 46.12 4.20
6128 7839 3.382832 CGACAGGGGCTTCCTCGT 61.383 66.667 0.00 0.32 46.12 4.18
6129 7840 4.148825 CCGACAGGGGCTTCCTCG 62.149 72.222 0.00 0.07 46.12 4.63
6143 7854 3.822192 CTCCATGGTCGTCGCCGA 61.822 66.667 12.58 0.00 41.73 5.54
6144 7855 4.873129 CCTCCATGGTCGTCGCCG 62.873 72.222 12.58 0.00 0.00 6.46
6145 7856 4.530857 CCCTCCATGGTCGTCGCC 62.531 72.222 12.58 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.