Multiple sequence alignment - TraesCS1D01G221900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G221900 chr1D 100.000 8273 0 0 1 8273 309851311 309859583 0.000000e+00 15278.0
1 TraesCS1D01G221900 chr1D 93.324 3565 227 9 4044 7605 391612581 391616137 0.000000e+00 5254.0
2 TraesCS1D01G221900 chr1D 93.169 3572 235 8 4042 7609 440554039 440550473 0.000000e+00 5236.0
3 TraesCS1D01G221900 chr1D 85.382 1977 158 56 433 2329 309916351 309918276 0.000000e+00 1929.0
4 TraesCS1D01G221900 chr1D 91.756 558 46 0 3144 3701 309919839 309920396 0.000000e+00 776.0
5 TraesCS1D01G221900 chr1D 90.455 220 21 0 3824 4043 309920605 309920824 2.920000e-74 291.0
6 TraesCS1D01G221900 chr1D 83.030 330 38 5 2771 3097 309919243 309919557 4.890000e-72 283.0
7 TraesCS1D01G221900 chr1D 80.926 367 55 10 11 363 391162648 391162283 8.180000e-70 276.0
8 TraesCS1D01G221900 chr1D 90.374 187 13 4 2432 2614 309918357 309918542 2.980000e-59 241.0
9 TraesCS1D01G221900 chr1D 92.683 82 6 0 3736 3817 309920488 309920569 1.460000e-22 119.0
10 TraesCS1D01G221900 chr1D 82.114 123 22 0 245 367 476527488 476527610 1.140000e-18 106.0
11 TraesCS1D01G221900 chr1D 84.615 78 8 4 2613 2686 433912603 433912680 3.200000e-09 75.0
12 TraesCS1D01G221900 chr1D 84.810 79 6 6 2614 2686 442373784 442373862 3.200000e-09 75.0
13 TraesCS1D01G221900 chr1D 84.416 77 9 3 2612 2686 118886243 118886168 1.150000e-08 73.1
14 TraesCS1D01G221900 chr1D 85.333 75 6 4 2612 2685 464799795 464799725 1.150000e-08 73.1
15 TraesCS1D01G221900 chr5D 94.557 3564 192 2 4044 7605 294124959 294121396 0.000000e+00 5505.0
16 TraesCS1D01G221900 chr5D 95.672 670 29 0 7604 8273 562174490 562173821 0.000000e+00 1077.0
17 TraesCS1D01G221900 chr5D 94.469 669 34 3 7605 8273 465947144 465946479 0.000000e+00 1027.0
18 TraesCS1D01G221900 chr5D 94.012 668 37 3 7605 8272 385153480 385154144 0.000000e+00 1009.0
19 TraesCS1D01G221900 chr5D 93.423 669 42 2 7605 8273 313170709 313171375 0.000000e+00 990.0
20 TraesCS1D01G221900 chr5D 92.687 670 47 2 7604 8273 405501736 405502403 0.000000e+00 965.0
21 TraesCS1D01G221900 chr5D 86.905 84 6 5 2606 2686 498669837 498669756 1.140000e-13 89.8
22 TraesCS1D01G221900 chr5D 86.842 76 5 4 2613 2685 26518229 26518302 6.880000e-11 80.5
23 TraesCS1D01G221900 chr3D 94.387 3563 197 3 4044 7605 290083914 290080354 0.000000e+00 5469.0
24 TraesCS1D01G221900 chr3D 92.676 669 47 2 7605 8273 296810490 296811156 0.000000e+00 963.0
25 TraesCS1D01G221900 chr3D 82.400 125 22 0 245 369 453226700 453226576 8.780000e-20 110.0
26 TraesCS1D01G221900 chr2D 93.966 3563 214 1 4044 7605 362355576 362359138 0.000000e+00 5387.0
27 TraesCS1D01G221900 chr2D 93.582 670 41 2 7604 8273 510643218 510642551 0.000000e+00 998.0
28 TraesCS1D01G221900 chr4D 93.547 3564 223 7 4044 7605 122546728 122550286 0.000000e+00 5301.0
29 TraesCS1D01G221900 chr4D 83.871 93 7 6 2613 2704 504343828 504343743 1.910000e-11 82.4
30 TraesCS1D01G221900 chr4D 87.838 74 3 4 2613 2686 505192383 505192450 1.910000e-11 82.4
31 TraesCS1D01G221900 chr7D 93.438 3566 223 9 4044 7605 593601327 593597769 0.000000e+00 5278.0
32 TraesCS1D01G221900 chr7D 93.380 3565 217 9 4044 7605 573926200 573929748 0.000000e+00 5258.0
33 TraesCS1D01G221900 chr7D 92.985 670 43 4 7604 8273 149952084 149952749 0.000000e+00 974.0
34 TraesCS1D01G221900 chr7D 84.746 118 15 2 245 360 410512644 410512528 1.890000e-21 115.0
35 TraesCS1D01G221900 chr6D 93.303 3569 228 9 4041 7605 318786410 318789971 0.000000e+00 5256.0
36 TraesCS1D01G221900 chr6D 92.604 676 49 1 7598 8273 469657078 469657752 0.000000e+00 970.0
37 TraesCS1D01G221900 chr6D 78.351 388 46 22 1 362 25610505 25610130 5.030000e-52 217.0
38 TraesCS1D01G221900 chr6D 86.250 80 6 4 2613 2690 13600154 13600230 1.910000e-11 82.4
39 TraesCS1D01G221900 chr6D 84.884 86 5 7 2612 2693 294774847 294774928 6.880000e-11 80.5
40 TraesCS1D01G221900 chr6D 95.833 48 2 0 2640 2687 7414562 7414515 2.480000e-10 78.7
41 TraesCS1D01G221900 chr6D 93.878 49 3 0 2636 2684 26404900 26404948 3.200000e-09 75.0
42 TraesCS1D01G221900 chr6D 82.558 86 11 4 2609 2691 157373747 157373831 1.150000e-08 73.1
43 TraesCS1D01G221900 chr3A 96.393 1802 62 3 840 2640 128720315 128718516 0.000000e+00 2964.0
44 TraesCS1D01G221900 chr3A 96.920 1396 30 4 2658 4046 128718532 128717143 0.000000e+00 2327.0
45 TraesCS1D01G221900 chr3A 85.639 954 77 32 1394 2329 128585664 128584753 0.000000e+00 948.0
46 TraesCS1D01G221900 chr3A 89.736 643 45 11 198 838 128835024 128834401 0.000000e+00 802.0
47 TraesCS1D01G221900 chr3A 91.135 564 50 0 3144 3707 128583204 128582641 0.000000e+00 765.0
48 TraesCS1D01G221900 chr3A 87.356 696 41 19 691 1341 128586900 128586207 0.000000e+00 754.0
49 TraesCS1D01G221900 chr3A 83.636 330 36 5 2771 3097 128583788 128583474 2.260000e-75 294.0
50 TraesCS1D01G221900 chr3A 89.686 223 23 0 3824 4046 128582437 128582215 1.360000e-72 285.0
51 TraesCS1D01G221900 chr3A 91.979 187 10 5 2432 2614 128584678 128584493 2.960000e-64 257.0
52 TraesCS1D01G221900 chr3A 90.476 105 9 1 92 195 129038393 129038289 4.030000e-28 137.0
53 TraesCS1D01G221900 chr3A 93.902 82 5 0 3736 3817 128582554 128582473 3.140000e-24 124.0
54 TraesCS1D01G221900 chr1A 96.484 1792 62 1 834 2625 389767510 389769300 0.000000e+00 2959.0
55 TraesCS1D01G221900 chr1A 96.841 1393 31 6 2658 4043 389769299 389770685 0.000000e+00 2316.0
56 TraesCS1D01G221900 chr1A 85.564 949 81 30 1401 2329 389798912 389799824 0.000000e+00 942.0
57 TraesCS1D01G221900 chr1A 91.312 564 49 0 3144 3707 389801374 389801937 0.000000e+00 771.0
58 TraesCS1D01G221900 chr1A 88.563 647 51 7 195 840 389616373 389616997 0.000000e+00 763.0
59 TraesCS1D01G221900 chr1A 86.525 564 34 15 816 1337 389798103 389798666 4.300000e-162 582.0
60 TraesCS1D01G221900 chr1A 83.636 330 36 5 2771 3097 389800789 389801103 2.260000e-75 294.0
61 TraesCS1D01G221900 chr1A 90.000 220 22 0 3824 4043 389802141 389802360 1.360000e-72 285.0
62 TraesCS1D01G221900 chr1A 91.979 187 10 5 2432 2614 389799899 389800084 2.960000e-64 257.0
63 TraesCS1D01G221900 chr1A 88.889 135 10 3 691 822 389795307 389795439 2.390000e-35 161.0
64 TraesCS1D01G221900 chr1A 88.793 116 11 2 79 192 389286013 389286128 3.110000e-29 141.0
65 TraesCS1D01G221900 chr1A 93.902 82 5 0 3736 3817 389802024 389802105 3.140000e-24 124.0
66 TraesCS1D01G221900 chr1A 80.952 105 20 0 255 359 446138280 446138384 5.320000e-12 84.2
67 TraesCS1D01G221900 chr1B 96.223 1774 55 9 869 2638 419768964 419770729 0.000000e+00 2894.0
68 TraesCS1D01G221900 chr1B 84.875 1719 133 51 678 2329 419940562 419942220 0.000000e+00 1616.0
69 TraesCS1D01G221900 chr1B 94.958 595 29 1 3144 3737 419771400 419771994 0.000000e+00 931.0
70 TraesCS1D01G221900 chr1B 91.489 564 45 2 3144 3707 419949043 419949603 0.000000e+00 773.0
71 TraesCS1D01G221900 chr1B 96.809 376 12 0 2752 3127 419770749 419771124 5.450000e-176 628.0
72 TraesCS1D01G221900 chr1B 93.060 317 13 1 3736 4043 419772060 419772376 9.790000e-124 455.0
73 TraesCS1D01G221900 chr1B 82.396 409 48 11 433 833 419767735 419768127 1.330000e-87 335.0
74 TraesCS1D01G221900 chr1B 90.455 220 21 0 3824 4043 419949808 419950027 2.920000e-74 291.0
75 TraesCS1D01G221900 chr1B 83.030 330 38 5 2771 3097 419948449 419948763 4.890000e-72 283.0
76 TraesCS1D01G221900 chr1B 91.979 187 10 5 2432 2614 419942301 419942486 2.960000e-64 257.0
77 TraesCS1D01G221900 chr1B 78.811 387 55 13 1 361 12347603 12347218 1.390000e-57 235.0
78 TraesCS1D01G221900 chr1B 96.154 78 3 0 359 436 419767604 419767681 2.420000e-25 128.0
79 TraesCS1D01G221900 chr1B 93.902 82 5 0 3736 3817 419949691 419949772 3.140000e-24 124.0
80 TraesCS1D01G221900 chr1B 86.585 82 4 6 2603 2683 544785530 544785605 5.320000e-12 84.2
81 TraesCS1D01G221900 chr3B 81.328 241 41 4 124 362 796838096 796838334 8.470000e-45 193.0
82 TraesCS1D01G221900 chr3B 88.158 76 4 3 2611 2686 772186042 772186112 1.480000e-12 86.1
83 TraesCS1D01G221900 chr2A 83.529 170 16 5 194 362 8415917 8415759 1.860000e-31 148.0
84 TraesCS1D01G221900 chr2A 88.119 101 12 0 255 355 29367381 29367481 4.060000e-23 121.0
85 TraesCS1D01G221900 chr2A 84.298 121 19 0 246 366 43220448 43220328 1.460000e-22 119.0
86 TraesCS1D01G221900 chr7A 81.765 170 29 2 194 362 28259449 28259617 3.110000e-29 141.0
87 TraesCS1D01G221900 chr7A 83.178 107 18 0 255 361 616700401 616700295 1.900000e-16 99.0
88 TraesCS1D01G221900 chr7A 85.542 83 6 6 2609 2686 60725598 60725517 1.910000e-11 82.4
89 TraesCS1D01G221900 chr4A 84.158 101 16 0 255 355 579401044 579401144 1.900000e-16 99.0
90 TraesCS1D01G221900 chr4A 81.739 115 21 0 245 359 7468627 7468741 6.830000e-16 97.1
91 TraesCS1D01G221900 chr2B 88.750 80 6 3 2608 2685 383562578 383562500 2.460000e-15 95.3
92 TraesCS1D01G221900 chr5A 87.059 85 8 3 2611 2694 512828657 512828739 8.840000e-15 93.5
93 TraesCS1D01G221900 chr5B 85.882 85 9 3 2611 2694 488608883 488608965 4.110000e-13 87.9
94 TraesCS1D01G221900 chrUn 87.013 77 6 4 2613 2685 110687410 110687486 5.320000e-12 84.2
95 TraesCS1D01G221900 chrUn 87.838 74 6 3 2613 2683 298567430 298567503 5.320000e-12 84.2
96 TraesCS1D01G221900 chrUn 88.060 67 4 4 2620 2683 20852911 20852976 8.900000e-10 76.8
97 TraesCS1D01G221900 chrUn 82.500 80 7 6 2613 2685 65136769 65136690 6.930000e-06 63.9
98 TraesCS1D01G221900 chrUn 84.058 69 5 4 2621 2685 91675942 91676008 2.490000e-05 62.1
99 TraesCS1D01G221900 chrUn 84.058 69 5 4 2621 2685 441250263 441250197 2.490000e-05 62.1
100 TraesCS1D01G221900 chrUn 100.000 31 0 0 2658 2688 75908338 75908368 3.230000e-04 58.4
101 TraesCS1D01G221900 chrUn 100.000 31 0 0 2654 2684 321281812 321281782 3.230000e-04 58.4
102 TraesCS1D01G221900 chrUn 100.000 31 0 0 2654 2684 330018425 330018395 3.230000e-04 58.4
103 TraesCS1D01G221900 chrUn 100.000 31 0 0 2654 2684 336527292 336527262 3.230000e-04 58.4
104 TraesCS1D01G221900 chrUn 90.698 43 2 2 2648 2688 68521029 68520987 1.000000e-03 56.5
105 TraesCS1D01G221900 chrUn 90.698 43 2 2 2648 2688 294565887 294565845 1.000000e-03 56.5
106 TraesCS1D01G221900 chrUn 92.500 40 1 2 2648 2685 301552321 301552360 1.000000e-03 56.5
107 TraesCS1D01G221900 chrUn 100.000 28 0 0 2611 2638 22753150 22753177 1.500000e-02 52.8
108 TraesCS1D01G221900 chrUn 100.000 28 0 0 2611 2638 197752393 197752420 1.500000e-02 52.8
109 TraesCS1D01G221900 chr4B 83.696 92 9 5 2605 2692 389117521 389117432 1.910000e-11 82.4
110 TraesCS1D01G221900 chr6B 85.057 87 3 6 2599 2683 503545333 503545255 6.880000e-11 80.5
111 TraesCS1D01G221900 chr6A 86.667 75 6 4 2613 2683 55730838 55730764 6.880000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G221900 chr1D 309851311 309859583 8272 False 15278.000000 15278 100.000000 1 8273 1 chr1D.!!$F1 8272
1 TraesCS1D01G221900 chr1D 391612581 391616137 3556 False 5254.000000 5254 93.324000 4044 7605 1 chr1D.!!$F2 3561
2 TraesCS1D01G221900 chr1D 440550473 440554039 3566 True 5236.000000 5236 93.169000 4042 7609 1 chr1D.!!$R3 3567
3 TraesCS1D01G221900 chr1D 309916351 309920824 4473 False 606.500000 1929 88.946667 433 4043 6 chr1D.!!$F6 3610
4 TraesCS1D01G221900 chr5D 294121396 294124959 3563 True 5505.000000 5505 94.557000 4044 7605 1 chr5D.!!$R1 3561
5 TraesCS1D01G221900 chr5D 562173821 562174490 669 True 1077.000000 1077 95.672000 7604 8273 1 chr5D.!!$R4 669
6 TraesCS1D01G221900 chr5D 465946479 465947144 665 True 1027.000000 1027 94.469000 7605 8273 1 chr5D.!!$R2 668
7 TraesCS1D01G221900 chr5D 385153480 385154144 664 False 1009.000000 1009 94.012000 7605 8272 1 chr5D.!!$F3 667
8 TraesCS1D01G221900 chr5D 313170709 313171375 666 False 990.000000 990 93.423000 7605 8273 1 chr5D.!!$F2 668
9 TraesCS1D01G221900 chr5D 405501736 405502403 667 False 965.000000 965 92.687000 7604 8273 1 chr5D.!!$F4 669
10 TraesCS1D01G221900 chr3D 290080354 290083914 3560 True 5469.000000 5469 94.387000 4044 7605 1 chr3D.!!$R1 3561
11 TraesCS1D01G221900 chr3D 296810490 296811156 666 False 963.000000 963 92.676000 7605 8273 1 chr3D.!!$F1 668
12 TraesCS1D01G221900 chr2D 362355576 362359138 3562 False 5387.000000 5387 93.966000 4044 7605 1 chr2D.!!$F1 3561
13 TraesCS1D01G221900 chr2D 510642551 510643218 667 True 998.000000 998 93.582000 7604 8273 1 chr2D.!!$R1 669
14 TraesCS1D01G221900 chr4D 122546728 122550286 3558 False 5301.000000 5301 93.547000 4044 7605 1 chr4D.!!$F1 3561
15 TraesCS1D01G221900 chr7D 593597769 593601327 3558 True 5278.000000 5278 93.438000 4044 7605 1 chr7D.!!$R2 3561
16 TraesCS1D01G221900 chr7D 573926200 573929748 3548 False 5258.000000 5258 93.380000 4044 7605 1 chr7D.!!$F2 3561
17 TraesCS1D01G221900 chr7D 149952084 149952749 665 False 974.000000 974 92.985000 7604 8273 1 chr7D.!!$F1 669
18 TraesCS1D01G221900 chr6D 318786410 318789971 3561 False 5256.000000 5256 93.303000 4041 7605 1 chr6D.!!$F5 3564
19 TraesCS1D01G221900 chr6D 469657078 469657752 674 False 970.000000 970 92.604000 7598 8273 1 chr6D.!!$F6 675
20 TraesCS1D01G221900 chr3A 128717143 128720315 3172 True 2645.500000 2964 96.656500 840 4046 2 chr3A.!!$R4 3206
21 TraesCS1D01G221900 chr3A 128834401 128835024 623 True 802.000000 802 89.736000 198 838 1 chr3A.!!$R1 640
22 TraesCS1D01G221900 chr3A 128582215 128586900 4685 True 489.571429 948 89.047571 691 4046 7 chr3A.!!$R3 3355
23 TraesCS1D01G221900 chr1A 389767510 389770685 3175 False 2637.500000 2959 96.662500 834 4043 2 chr1A.!!$F4 3209
24 TraesCS1D01G221900 chr1A 389616373 389616997 624 False 763.000000 763 88.563000 195 840 1 chr1A.!!$F2 645
25 TraesCS1D01G221900 chr1A 389795307 389802360 7053 False 427.000000 942 88.975875 691 4043 8 chr1A.!!$F5 3352
26 TraesCS1D01G221900 chr1B 419940562 419942486 1924 False 936.500000 1616 88.427000 678 2614 2 chr1B.!!$F3 1936
27 TraesCS1D01G221900 chr1B 419767604 419772376 4772 False 895.166667 2894 93.266667 359 4043 6 chr1B.!!$F2 3684
28 TraesCS1D01G221900 chr1B 419948449 419950027 1578 False 367.750000 773 89.719000 2771 4043 4 chr1B.!!$F4 1272

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
70 71 0.377203 GGCAGTGCGTGGTAATTAGC 59.623 55.000 9.45 7.74 0.00 3.09 F
76 77 0.380733 GCGTGGTAATTAGCAAGGCC 59.619 55.000 25.07 11.37 35.24 5.19 F
571 632 0.824109 TGCGGAGGGAGAATGTAGTG 59.176 55.000 0.00 0.00 0.00 2.74 F
619 680 1.007271 CGGCTGTATAGGGCTCGTG 60.007 63.158 0.00 0.00 0.00 4.35 F
1572 5699 1.239347 GTGGTTCAGCTCAGGGTTTC 58.761 55.000 0.00 0.00 0.00 2.78 F
2383 6562 1.597461 CTTCCCTGGGTCGTCCTTC 59.403 63.158 13.56 0.00 36.20 3.46 F
3989 9184 0.325933 CCACCAGAACTCTCCATGCA 59.674 55.000 0.00 0.00 0.00 3.96 F
4280 9478 0.464735 TTGTTGTCGGTTGTCCCTGG 60.465 55.000 0.00 0.00 0.00 4.45 F
6086 11287 0.040204 CCTGATGAAAACCCCCTGCT 59.960 55.000 0.00 0.00 0.00 4.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1163 4727 1.067516 GCAGCAGCAACTGGAAGAAAA 59.932 47.619 7.95 0.0 41.58 2.29 R
1319 4927 2.032681 GGGGTCTTCAGCGCAACT 59.967 61.111 11.47 0.0 33.26 3.16 R
1572 5699 2.679837 GTGGAATGTGTGTGATAGCCAG 59.320 50.000 0.00 0.0 0.00 4.85 R
1590 5717 3.668447 ACATCTAGTTGCTGAGTTGTGG 58.332 45.455 0.51 0.0 0.00 4.17 R
3445 8533 1.064463 GGCCTTCACCAATCAGGATCA 60.064 52.381 0.00 0.0 41.22 2.92 R
4346 9544 0.104120 CCGGACACGATTATGAGCCA 59.896 55.000 0.00 0.0 44.60 4.75 R
5009 10210 1.103803 TACTAGTGCAGGAGGAAGCG 58.896 55.000 5.39 0.0 0.00 4.68 R
6265 11466 0.107643 TCACACATCAAACCGGAGCA 59.892 50.000 9.46 0.0 0.00 4.26 R
7617 12820 0.253894 GGGCGGGTTACACCAGTAAT 59.746 55.000 0.00 0.0 41.86 1.89 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.369625 GGAGTTACATGACGGCTTGG 58.630 55.000 9.23 0.00 0.00 3.61
20 21 1.066430 GGAGTTACATGACGGCTTGGA 60.066 52.381 9.23 0.00 0.00 3.53
21 22 2.271800 GAGTTACATGACGGCTTGGAG 58.728 52.381 9.23 0.00 0.00 3.86
22 23 0.727398 GTTACATGACGGCTTGGAGC 59.273 55.000 9.23 0.00 41.46 4.70
23 24 0.739462 TTACATGACGGCTTGGAGCG 60.739 55.000 9.23 0.00 43.62 5.03
24 25 2.572095 TACATGACGGCTTGGAGCGG 62.572 60.000 9.23 6.02 43.62 5.52
31 32 3.660111 GCTTGGAGCGGCGTGTTT 61.660 61.111 9.37 0.00 0.00 2.83
32 33 2.322081 GCTTGGAGCGGCGTGTTTA 61.322 57.895 9.37 0.00 0.00 2.01
33 34 1.787847 CTTGGAGCGGCGTGTTTAG 59.212 57.895 9.37 0.00 0.00 1.85
34 35 0.949105 CTTGGAGCGGCGTGTTTAGT 60.949 55.000 9.37 0.00 0.00 2.24
35 36 1.225376 TTGGAGCGGCGTGTTTAGTG 61.225 55.000 9.37 0.00 0.00 2.74
36 37 2.388232 GGAGCGGCGTGTTTAGTGG 61.388 63.158 9.37 0.00 0.00 4.00
37 38 3.023591 GAGCGGCGTGTTTAGTGGC 62.024 63.158 9.37 0.00 0.00 5.01
38 39 4.097863 GCGGCGTGTTTAGTGGCC 62.098 66.667 9.37 0.00 42.14 5.36
39 40 2.666862 CGGCGTGTTTAGTGGCCA 60.667 61.111 0.00 0.00 45.85 5.36
40 41 2.677003 CGGCGTGTTTAGTGGCCAG 61.677 63.158 5.11 0.00 45.85 4.85
41 42 2.561373 GCGTGTTTAGTGGCCAGC 59.439 61.111 5.11 0.00 0.00 4.85
42 43 2.258013 GCGTGTTTAGTGGCCAGCA 61.258 57.895 5.11 0.00 0.00 4.41
43 44 1.868997 CGTGTTTAGTGGCCAGCAG 59.131 57.895 5.11 0.00 0.00 4.24
44 45 1.577328 CGTGTTTAGTGGCCAGCAGG 61.577 60.000 5.11 2.58 38.23 4.85
45 46 1.074775 TGTTTAGTGGCCAGCAGGG 59.925 57.895 5.11 0.00 40.85 4.45
66 67 2.435938 CCGGCAGTGCGTGGTAAT 60.436 61.111 15.05 0.00 0.00 1.89
67 68 2.038269 CCGGCAGTGCGTGGTAATT 61.038 57.895 15.05 0.00 0.00 1.40
68 69 0.741574 CCGGCAGTGCGTGGTAATTA 60.742 55.000 15.05 0.00 0.00 1.40
69 70 0.650512 CGGCAGTGCGTGGTAATTAG 59.349 55.000 9.45 0.00 0.00 1.73
70 71 0.377203 GGCAGTGCGTGGTAATTAGC 59.623 55.000 9.45 7.74 0.00 3.09
71 72 1.083489 GCAGTGCGTGGTAATTAGCA 58.917 50.000 13.22 13.22 37.26 3.49
72 73 1.466950 GCAGTGCGTGGTAATTAGCAA 59.533 47.619 18.42 1.24 41.56 3.91
73 74 2.476185 GCAGTGCGTGGTAATTAGCAAG 60.476 50.000 21.47 21.47 41.56 4.01
74 75 2.095853 CAGTGCGTGGTAATTAGCAAGG 59.904 50.000 25.07 18.01 41.56 3.61
75 76 1.091537 TGCGTGGTAATTAGCAAGGC 58.908 50.000 25.07 24.62 36.60 4.35
76 77 0.380733 GCGTGGTAATTAGCAAGGCC 59.619 55.000 25.07 11.37 35.24 5.19
77 78 1.745232 CGTGGTAATTAGCAAGGCCA 58.255 50.000 18.42 2.63 35.24 5.36
78 79 1.400494 CGTGGTAATTAGCAAGGCCAC 59.600 52.381 18.42 13.41 41.92 5.01
79 80 1.749063 GTGGTAATTAGCAAGGCCACC 59.251 52.381 18.42 0.00 40.12 4.61
80 81 1.356059 TGGTAATTAGCAAGGCCACCA 59.644 47.619 14.77 3.10 32.36 4.17
81 82 2.225142 TGGTAATTAGCAAGGCCACCAA 60.225 45.455 14.77 0.00 31.88 3.67
82 83 2.165641 GGTAATTAGCAAGGCCACCAAC 59.834 50.000 5.01 0.00 0.00 3.77
83 84 0.887933 AATTAGCAAGGCCACCAACG 59.112 50.000 5.01 0.00 0.00 4.10
84 85 0.965363 ATTAGCAAGGCCACCAACGG 60.965 55.000 5.01 0.00 0.00 4.44
85 86 2.346284 TTAGCAAGGCCACCAACGGT 62.346 55.000 5.01 0.00 35.62 4.83
133 134 5.073192 CAACATTGCACATCAACTGTTTG 57.927 39.130 0.00 0.00 37.53 2.93
134 135 4.652421 ACATTGCACATCAACTGTTTGA 57.348 36.364 0.00 0.00 45.93 2.69
135 136 4.362279 ACATTGCACATCAACTGTTTGAC 58.638 39.130 0.00 0.00 44.66 3.18
136 137 2.753989 TGCACATCAACTGTTTGACG 57.246 45.000 0.00 0.00 44.66 4.35
137 138 2.284190 TGCACATCAACTGTTTGACGA 58.716 42.857 0.00 0.00 44.66 4.20
138 139 2.680339 TGCACATCAACTGTTTGACGAA 59.320 40.909 0.00 0.00 44.66 3.85
139 140 3.127721 TGCACATCAACTGTTTGACGAAA 59.872 39.130 0.00 0.00 44.66 3.46
140 141 3.482110 GCACATCAACTGTTTGACGAAAC 59.518 43.478 0.00 0.00 44.66 2.78
141 142 3.718864 CACATCAACTGTTTGACGAAACG 59.281 43.478 0.00 0.00 44.66 3.60
142 143 3.372822 ACATCAACTGTTTGACGAAACGT 59.627 39.130 0.00 0.00 44.66 3.99
143 144 4.493545 ACATCAACTGTTTGACGAAACGTC 60.494 41.667 15.76 15.76 45.58 4.34
144 145 6.643441 ACATCAACTGTTTGACGAAACGTCT 61.643 40.000 21.41 1.60 45.58 4.18
145 146 7.390096 ACATCAACTGTTTGACGAAACGTCTA 61.390 38.462 21.41 13.54 45.58 2.59
146 147 9.292271 ACATCAACTGTTTGACGAAACGTCTAC 62.292 40.741 21.41 18.59 45.58 2.59
154 155 3.604875 ACGAAACGTCTACAATGGGAT 57.395 42.857 0.00 0.00 33.69 3.85
155 156 3.259064 ACGAAACGTCTACAATGGGATG 58.741 45.455 0.00 0.00 33.69 3.51
156 157 3.056393 ACGAAACGTCTACAATGGGATGA 60.056 43.478 0.00 0.00 33.69 2.92
157 158 3.930229 CGAAACGTCTACAATGGGATGAA 59.070 43.478 0.00 0.00 0.00 2.57
158 159 4.570772 CGAAACGTCTACAATGGGATGAAT 59.429 41.667 0.00 0.00 0.00 2.57
159 160 5.502382 CGAAACGTCTACAATGGGATGAATG 60.502 44.000 0.00 0.00 0.00 2.67
160 161 4.753516 ACGTCTACAATGGGATGAATGA 57.246 40.909 5.10 0.00 0.00 2.57
161 162 5.097742 ACGTCTACAATGGGATGAATGAA 57.902 39.130 5.10 0.00 0.00 2.57
162 163 5.496556 ACGTCTACAATGGGATGAATGAAA 58.503 37.500 5.10 0.00 0.00 2.69
163 164 5.943416 ACGTCTACAATGGGATGAATGAAAA 59.057 36.000 5.10 0.00 0.00 2.29
164 165 6.094048 ACGTCTACAATGGGATGAATGAAAAG 59.906 38.462 5.10 0.00 0.00 2.27
165 166 6.316140 CGTCTACAATGGGATGAATGAAAAGA 59.684 38.462 0.00 0.00 0.00 2.52
166 167 7.148255 CGTCTACAATGGGATGAATGAAAAGAA 60.148 37.037 0.00 0.00 0.00 2.52
167 168 8.522830 GTCTACAATGGGATGAATGAAAAGAAA 58.477 33.333 0.00 0.00 0.00 2.52
168 169 9.258629 TCTACAATGGGATGAATGAAAAGAAAT 57.741 29.630 0.00 0.00 0.00 2.17
171 172 9.258629 ACAATGGGATGAATGAAAAGAAATAGA 57.741 29.630 0.00 0.00 0.00 1.98
186 187 9.603921 AAAAGAAATAGAAATATTGCCATGTGG 57.396 29.630 0.00 0.00 38.53 4.17
187 188 8.537728 AAGAAATAGAAATATTGCCATGTGGA 57.462 30.769 2.55 0.00 37.39 4.02
188 189 7.945134 AGAAATAGAAATATTGCCATGTGGAC 58.055 34.615 2.55 0.00 37.39 4.02
189 190 7.560991 AGAAATAGAAATATTGCCATGTGGACA 59.439 33.333 2.55 0.00 37.39 4.02
190 191 7.844493 AATAGAAATATTGCCATGTGGACAT 57.156 32.000 2.55 0.00 37.39 3.06
289 290 2.622942 GAGTTGAGGGTGCAAATTGTCA 59.377 45.455 0.00 0.00 0.00 3.58
299 300 5.337491 GGGTGCAAATTGTCAGGTTTCATAT 60.337 40.000 0.00 0.00 0.00 1.78
344 345 7.014808 ACTCCATCAAAAATTAAGGGACGAAAA 59.985 33.333 0.00 0.00 0.00 2.29
571 632 0.824109 TGCGGAGGGAGAATGTAGTG 59.176 55.000 0.00 0.00 0.00 2.74
619 680 1.007271 CGGCTGTATAGGGCTCGTG 60.007 63.158 0.00 0.00 0.00 4.35
633 699 2.349912 GGCTCGTGCTCTCTTGTTTTTC 60.350 50.000 9.61 0.00 39.59 2.29
711 779 6.502652 GCCTTTTGTTGTTTGGCATAAATTT 58.497 32.000 0.00 0.00 42.79 1.82
712 780 7.643579 GCCTTTTGTTGTTTGGCATAAATTTA 58.356 30.769 0.00 0.00 42.79 1.40
713 781 8.131731 GCCTTTTGTTGTTTGGCATAAATTTAA 58.868 29.630 1.21 0.00 42.79 1.52
714 782 9.444534 CCTTTTGTTGTTTGGCATAAATTTAAC 57.555 29.630 1.21 0.00 0.00 2.01
783 855 9.829507 TTCTGTGTTCAATATTGGAAAAATGTT 57.170 25.926 15.36 0.00 0.00 2.71
838 4377 2.577449 AAAAGGCAAACGTGACCTTG 57.423 45.000 15.43 5.67 39.62 3.61
1162 4726 3.214250 ATTCCTCGCGCGATCCTCC 62.214 63.158 34.86 0.00 0.00 4.30
1163 4727 4.877619 TCCTCGCGCGATCCTCCT 62.878 66.667 34.86 0.00 0.00 3.69
1319 4927 2.220586 TGGACCACCGGCATCTTCA 61.221 57.895 0.00 0.00 39.42 3.02
1437 5546 2.240667 TGCTACTTCCTACCCTAGACGT 59.759 50.000 0.00 0.00 0.00 4.34
1572 5699 1.239347 GTGGTTCAGCTCAGGGTTTC 58.761 55.000 0.00 0.00 0.00 2.78
1590 5717 4.142600 GGTTTCTGGCTATCACACACATTC 60.143 45.833 0.00 0.00 0.00 2.67
1726 5854 6.144724 GCACACGCAGGTTTTTATTATGAAAA 59.855 34.615 0.00 0.00 38.36 2.29
1727 5855 7.148656 GCACACGCAGGTTTTTATTATGAAAAT 60.149 33.333 0.00 0.00 38.36 1.82
1752 5880 3.609853 TGCAGGTACATCAAGTGAATCC 58.390 45.455 0.00 0.00 0.00 3.01
1818 5953 2.713167 CCATACACCTCCCATCCTCATT 59.287 50.000 0.00 0.00 0.00 2.57
1881 6020 9.278978 TGCATGTGTTTGTTAGAGACTATTTTA 57.721 29.630 0.00 0.00 0.00 1.52
2383 6562 1.597461 CTTCCCTGGGTCGTCCTTC 59.403 63.158 13.56 0.00 36.20 3.46
2497 6678 3.164268 TGCAAGCCTTTATGGTTCACAT 58.836 40.909 0.00 0.00 43.68 3.21
2638 6821 6.726764 ACTCCCTCTGTCCCATAATATAAGAC 59.273 42.308 0.00 0.00 0.00 3.01
2639 6822 6.630131 TCCCTCTGTCCCATAATATAAGACA 58.370 40.000 4.97 4.97 36.16 3.41
2640 6823 7.256399 TCCCTCTGTCCCATAATATAAGACAT 58.744 38.462 5.38 0.00 36.89 3.06
2641 6824 8.406643 TCCCTCTGTCCCATAATATAAGACATA 58.593 37.037 5.38 0.00 36.89 2.29
2642 6825 9.218525 CCCTCTGTCCCATAATATAAGACATAT 57.781 37.037 5.38 0.00 36.89 1.78
2970 7773 5.721876 TTCGATCTAGAGACGTCTTTCTC 57.278 43.478 21.08 7.00 42.22 2.87
2986 7789 6.148480 CGTCTTTCTCCTTGATCTGTTTGAAT 59.852 38.462 0.00 0.00 0.00 2.57
3011 7814 3.508793 TCTTCTACAGGTACACTTTCCCG 59.491 47.826 0.00 0.00 0.00 5.14
3197 8285 2.224744 TGCACCTTTATGCTTCAGTCCA 60.225 45.455 0.00 0.00 46.28 4.02
3348 8436 3.262151 GGCCCTTAGAGAAGATATCCCAC 59.738 52.174 0.00 0.00 34.25 4.61
3381 8469 1.812235 CACTTGCCATGCTGTCTGTA 58.188 50.000 0.00 0.00 0.00 2.74
3401 8489 4.708909 TGTATTGAAGGTGGCATTGCATTA 59.291 37.500 11.39 0.00 0.00 1.90
3445 8533 1.214175 TGGTGTTGACCCAGACACATT 59.786 47.619 8.63 0.00 46.05 2.71
3739 8896 6.676950 TGCATTGTTAAAGTTATGTGGTCAG 58.323 36.000 0.00 0.00 0.00 3.51
3829 9024 6.938507 TCATTTTATCAATTCTTGCTTGGCT 58.061 32.000 0.00 0.00 0.00 4.75
3989 9184 0.325933 CCACCAGAACTCTCCATGCA 59.674 55.000 0.00 0.00 0.00 3.96
4015 9210 1.271543 TGCATAGTCCACTGCTGCTTT 60.272 47.619 13.89 0.00 39.16 3.51
4091 9287 5.568392 TCCTAGAGAAAGGACTTAGTCGTT 58.432 41.667 13.67 13.67 40.86 3.85
4092 9288 5.647225 TCCTAGAGAAAGGACTTAGTCGTTC 59.353 44.000 18.65 16.81 40.86 3.95
4095 9291 4.828387 AGAGAAAGGACTTAGTCGTTCAGT 59.172 41.667 18.65 5.62 39.28 3.41
4192 9390 4.546829 ACGATGAAGGTAAAAGCCTACA 57.453 40.909 0.00 0.00 38.03 2.74
4212 9410 7.050377 CCTACATCTAGTTGTGATGGAATTGT 58.950 38.462 15.33 0.00 43.88 2.71
4217 9415 3.575805 AGTTGTGATGGAATTGTTGGGT 58.424 40.909 0.00 0.00 0.00 4.51
4234 9432 1.271707 GGGTTTTCGATGACCAGGGAA 60.272 52.381 16.69 0.00 37.68 3.97
4269 9467 2.311462 CTGAGTCTCGAGTTGTTGTCG 58.689 52.381 13.13 0.00 38.84 4.35
4277 9475 0.942252 GAGTTGTTGTCGGTTGTCCC 59.058 55.000 0.00 0.00 0.00 4.46
4280 9478 0.464735 TTGTTGTCGGTTGTCCCTGG 60.465 55.000 0.00 0.00 0.00 4.45
4308 9506 3.105283 GCCTGGTCGTCCCCTTATATAT 58.895 50.000 0.00 0.00 0.00 0.86
4310 9508 4.099113 GCCTGGTCGTCCCCTTATATATAC 59.901 50.000 0.00 0.00 0.00 1.47
4346 9544 1.209747 GGTTTACAGAATCCCGAGGCT 59.790 52.381 0.00 0.00 0.00 4.58
4620 9818 8.956426 GGTTCATGTCAATCCTCAATACTTAAA 58.044 33.333 0.00 0.00 0.00 1.52
4761 9961 3.904800 TTAATGAGCCTCCGACAATCA 57.095 42.857 0.00 0.00 0.00 2.57
4858 10058 0.919710 AATAGGGCCAGGTGGTCTTC 59.080 55.000 6.18 0.00 40.38 2.87
4945 10146 1.819632 GCCGCCATCGTCCTTCATT 60.820 57.895 0.00 0.00 0.00 2.57
5009 10210 0.322546 AAAAGTGGTGATCCTCCGCC 60.323 55.000 12.11 0.00 36.26 6.13
5024 10225 4.400961 GCCGCTTCCTCCTGCACT 62.401 66.667 0.00 0.00 0.00 4.40
5132 10333 0.759346 ATGGCCGGTTAGATCTGACC 59.241 55.000 23.56 23.56 36.04 4.02
5152 10353 3.068873 ACCATTTTCAGCGCCTTTTGTAA 59.931 39.130 2.29 0.00 0.00 2.41
5194 10395 1.959042 AAGGCACCTGCTTGATATCG 58.041 50.000 0.00 0.00 41.70 2.92
5227 10428 7.546667 TCTGAACTTACTGAACTTTTAACACGT 59.453 33.333 0.00 0.00 0.00 4.49
5306 10507 3.581755 CATGGCAAGATGTGAAACTTGG 58.418 45.455 0.00 0.00 42.26 3.61
5408 10609 4.323477 TCCCCTGTTGAACCGCCG 62.323 66.667 0.00 0.00 0.00 6.46
5415 10616 1.226379 GTTGAACCGCCGATGCATG 60.226 57.895 2.46 0.00 37.32 4.06
5476 10677 5.153513 CCAAATCCGGTTTATCAATATGCG 58.846 41.667 0.00 0.00 0.00 4.73
5692 10893 1.453928 GGCCCGGAAAATCCTCCTG 60.454 63.158 0.73 0.00 33.30 3.86
5714 10915 1.677637 CCCAAGGACGGAGAGGTAGC 61.678 65.000 0.00 0.00 0.00 3.58
5745 10946 4.377839 TGATCATCTCAGACGAGGTTTC 57.622 45.455 0.00 0.00 39.95 2.78
5840 11041 0.320683 TCTGTGACCAACATCTGCCG 60.321 55.000 0.00 0.00 38.39 5.69
5861 11062 2.421619 CTTCCAAGTCTTCTGTGAGGC 58.578 52.381 0.00 0.00 0.00 4.70
5926 11127 1.937278 TCACTTAAACCGTCGCACAA 58.063 45.000 0.00 0.00 0.00 3.33
5928 11129 2.676839 TCACTTAAACCGTCGCACAAAA 59.323 40.909 0.00 0.00 0.00 2.44
5982 11183 1.604604 TGGCGGTTCAGAAAAGGAAG 58.395 50.000 0.00 0.00 0.00 3.46
6086 11287 0.040204 CCTGATGAAAACCCCCTGCT 59.960 55.000 0.00 0.00 0.00 4.24
6146 11347 1.695242 TCCTTAGAGGTTGACGGCAAA 59.305 47.619 4.55 0.00 36.53 3.68
6148 11349 3.081804 CCTTAGAGGTTGACGGCAAAAT 58.918 45.455 4.55 0.00 35.42 1.82
6231 11432 2.300152 AGGAGTTGATCTTGCTCGTTGA 59.700 45.455 0.00 0.00 0.00 3.18
6265 11466 1.134189 GTATTCTGCCCTTAAGCCGGT 60.134 52.381 1.90 0.00 0.00 5.28
6340 11541 6.624423 GCACATTGACATTCAGCTTACAGATT 60.624 38.462 0.00 0.00 0.00 2.40
6363 11564 3.993081 CAGAAGTCACTGAGGCTGTAAAG 59.007 47.826 0.00 0.00 39.94 1.85
6366 11567 4.689612 AGTCACTGAGGCTGTAAAGAAA 57.310 40.909 0.00 0.00 0.00 2.52
6369 11570 5.471456 AGTCACTGAGGCTGTAAAGAAAATG 59.529 40.000 0.00 0.00 0.00 2.32
6423 11624 0.533032 GACTACTCCCTTTCTGCGCT 59.467 55.000 9.73 0.00 0.00 5.92
6435 11636 0.028770 TCTGCGCTTTCAACAAACCG 59.971 50.000 9.73 0.00 0.00 4.44
6529 11731 2.252535 TCTGACAGGGTGATGATCCA 57.747 50.000 1.81 0.00 0.00 3.41
6548 11750 3.888930 TCCATTCTGGAACAAGAAACCAC 59.111 43.478 0.00 0.00 45.00 4.16
6564 11766 0.750182 CCACCACAAGACAAACCGGT 60.750 55.000 0.00 0.00 0.00 5.28
6616 11818 3.934068 TCGTCCAAAGACCAAGGTTATC 58.066 45.455 0.00 0.00 40.12 1.75
6642 11844 1.147817 ACCTGCCAAGAAAAGGACCAT 59.852 47.619 0.00 0.00 34.97 3.55
6655 11857 0.533755 GGACCATTGCATCCTCCGAG 60.534 60.000 0.00 0.00 31.75 4.63
6689 11891 1.766496 ACGATGTGGGTAATCCGGAAT 59.234 47.619 9.01 1.21 38.76 3.01
6730 11932 6.710744 ACTCTCTTGGTTCATTTTTCGTACAT 59.289 34.615 0.00 0.00 0.00 2.29
6793 11995 2.359214 TCATGCTGATGACGTAGAGGTC 59.641 50.000 0.00 0.00 33.40 3.85
6804 12006 4.039973 TGACGTAGAGGTCACCATTCTTTT 59.960 41.667 0.00 0.00 41.76 2.27
6806 12008 3.612860 CGTAGAGGTCACCATTCTTTTCG 59.387 47.826 0.00 0.00 0.00 3.46
6821 12023 2.691409 TTTCGCCGATTCAGATCCTT 57.309 45.000 0.00 0.00 0.00 3.36
6826 12028 2.018644 GCCGATTCAGATCCTTTGCCA 61.019 52.381 0.00 0.00 0.00 4.92
6831 12033 4.142315 CGATTCAGATCCTTTGCCAACATT 60.142 41.667 0.00 0.00 0.00 2.71
6839 12041 7.820872 CAGATCCTTTGCCAACATTAAAAATCT 59.179 33.333 0.00 0.00 0.00 2.40
6843 12045 6.705381 CCTTTGCCAACATTAAAAATCTGTCA 59.295 34.615 0.00 0.00 0.00 3.58
6899 12102 4.794334 TGCTTACTTGGACCCAAACTTTA 58.206 39.130 2.84 0.00 35.33 1.85
6909 12112 7.610580 TGGACCCAAACTTTATTTTGAAGAT 57.389 32.000 0.00 0.00 38.54 2.40
6910 12113 7.441017 TGGACCCAAACTTTATTTTGAAGATG 58.559 34.615 0.00 0.00 38.54 2.90
7092 12295 6.936900 CCGTCTGATTCAAATTATCAGGGTAT 59.063 38.462 14.06 0.00 45.78 2.73
7240 12443 4.938080 TGTTTATTTTTCTCAGCGCCAAA 58.062 34.783 2.29 0.00 0.00 3.28
7245 12448 0.539438 TTTCTCAGCGCCAAACCCAT 60.539 50.000 2.29 0.00 0.00 4.00
7247 12450 0.546122 TCTCAGCGCCAAACCCATAT 59.454 50.000 2.29 0.00 0.00 1.78
7252 12455 1.455383 GCGCCAAACCCATATCCAGG 61.455 60.000 0.00 0.00 0.00 4.45
7313 12516 2.287009 GCTGTTGAACCGGAGAAAACTG 60.287 50.000 9.46 11.80 0.00 3.16
7342 12545 3.753815 TGAAGAGACCAACATTGATGCA 58.246 40.909 0.00 0.00 0.00 3.96
7375 12578 1.202734 CCACCGCCTCAAGATCATGAT 60.203 52.381 8.25 8.25 0.00 2.45
7519 12722 0.445436 CGGCTGCTGATGACAAAGAC 59.555 55.000 1.17 0.00 0.00 3.01
7617 12820 5.158141 AGATGAGCTCTGTTGGGGATATAA 58.842 41.667 16.19 0.00 31.12 0.98
7756 12959 4.040829 ACTTAAGGCCCGTAGTGTTAAACT 59.959 41.667 7.53 0.00 43.40 2.66
7828 13031 2.937873 GCCGGACACTGTTTATAAGCCA 60.938 50.000 5.05 0.00 0.00 4.75
7838 13041 1.209621 TTATAAGCCAGCCGGGACTT 58.790 50.000 2.18 0.00 40.01 3.01
7844 13047 1.374947 CCAGCCGGGACTTTGAGAA 59.625 57.895 2.18 0.00 40.01 2.87
7876 13079 6.396450 GCGTTAACCTCTCTATATAAAGGGG 58.604 44.000 0.00 0.00 32.97 4.79
7935 13138 0.390472 GTAGCCAGGCATAGCGGATC 60.390 60.000 15.80 0.00 0.00 3.36
7999 13203 3.008704 GGAGTAGGCTTTTACCTTCACCA 59.991 47.826 0.00 0.00 41.50 4.17
8040 13244 1.752198 CCTCGTGTCCTTTGTCCCA 59.248 57.895 0.00 0.00 0.00 4.37
8194 13398 2.105466 GCAGCTTCGAAGGGCTCAG 61.105 63.158 25.77 9.38 35.26 3.35
8234 13438 3.264866 GACCAAGAGTCGTCGCGGT 62.265 63.158 6.13 0.00 35.30 5.68
8252 13456 3.795826 GCGGTAAGCTCTACATCAACGAT 60.796 47.826 0.00 0.00 44.04 3.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.066430 TCCAAGCCGTCATGTAACTCC 60.066 52.381 0.00 0.00 0.00 3.85
1 2 2.271800 CTCCAAGCCGTCATGTAACTC 58.728 52.381 0.00 0.00 0.00 3.01
2 3 1.676014 GCTCCAAGCCGTCATGTAACT 60.676 52.381 0.00 0.00 34.48 2.24
3 4 0.727398 GCTCCAAGCCGTCATGTAAC 59.273 55.000 0.00 0.00 34.48 2.50
4 5 0.739462 CGCTCCAAGCCGTCATGTAA 60.739 55.000 0.00 0.00 38.18 2.41
5 6 1.153647 CGCTCCAAGCCGTCATGTA 60.154 57.895 0.00 0.00 38.18 2.29
6 7 2.434884 CGCTCCAAGCCGTCATGT 60.435 61.111 0.00 0.00 38.18 3.21
7 8 3.197790 CCGCTCCAAGCCGTCATG 61.198 66.667 0.00 0.00 38.18 3.07
14 15 2.240612 CTAAACACGCCGCTCCAAGC 62.241 60.000 0.00 0.00 38.02 4.01
15 16 0.949105 ACTAAACACGCCGCTCCAAG 60.949 55.000 0.00 0.00 0.00 3.61
16 17 1.070105 ACTAAACACGCCGCTCCAA 59.930 52.632 0.00 0.00 0.00 3.53
17 18 1.666553 CACTAAACACGCCGCTCCA 60.667 57.895 0.00 0.00 0.00 3.86
18 19 2.388232 CCACTAAACACGCCGCTCC 61.388 63.158 0.00 0.00 0.00 4.70
19 20 3.023591 GCCACTAAACACGCCGCTC 62.024 63.158 0.00 0.00 0.00 5.03
20 21 3.047877 GCCACTAAACACGCCGCT 61.048 61.111 0.00 0.00 0.00 5.52
21 22 4.097863 GGCCACTAAACACGCCGC 62.098 66.667 0.00 0.00 0.00 6.53
22 23 2.666862 TGGCCACTAAACACGCCG 60.667 61.111 0.00 0.00 44.71 6.46
23 24 2.978018 GCTGGCCACTAAACACGCC 61.978 63.158 0.00 0.00 41.99 5.68
24 25 2.187599 CTGCTGGCCACTAAACACGC 62.188 60.000 0.00 0.81 0.00 5.34
25 26 1.577328 CCTGCTGGCCACTAAACACG 61.577 60.000 0.00 0.00 0.00 4.49
26 27 1.244019 CCCTGCTGGCCACTAAACAC 61.244 60.000 0.00 0.00 0.00 3.32
27 28 1.074775 CCCTGCTGGCCACTAAACA 59.925 57.895 0.00 0.00 0.00 2.83
28 29 4.002797 CCCTGCTGGCCACTAAAC 57.997 61.111 0.00 0.00 0.00 2.01
49 50 0.741574 TAATTACCACGCACTGCCGG 60.742 55.000 0.00 0.00 0.00 6.13
50 51 0.650512 CTAATTACCACGCACTGCCG 59.349 55.000 0.00 0.00 0.00 5.69
51 52 0.377203 GCTAATTACCACGCACTGCC 59.623 55.000 0.00 0.00 0.00 4.85
52 53 1.083489 TGCTAATTACCACGCACTGC 58.917 50.000 0.00 0.00 0.00 4.40
53 54 2.095853 CCTTGCTAATTACCACGCACTG 59.904 50.000 0.00 0.00 31.24 3.66
54 55 2.356135 CCTTGCTAATTACCACGCACT 58.644 47.619 0.00 0.00 31.24 4.40
55 56 1.202143 GCCTTGCTAATTACCACGCAC 60.202 52.381 0.00 0.00 31.24 5.34
56 57 1.091537 GCCTTGCTAATTACCACGCA 58.908 50.000 0.00 0.00 0.00 5.24
57 58 0.380733 GGCCTTGCTAATTACCACGC 59.619 55.000 0.00 0.00 0.00 5.34
58 59 1.400494 GTGGCCTTGCTAATTACCACG 59.600 52.381 3.32 0.00 38.32 4.94
59 60 1.749063 GGTGGCCTTGCTAATTACCAC 59.251 52.381 3.32 10.70 45.41 4.16
60 61 1.356059 TGGTGGCCTTGCTAATTACCA 59.644 47.619 3.32 2.43 34.61 3.25
61 62 2.137810 TGGTGGCCTTGCTAATTACC 57.862 50.000 3.32 0.00 0.00 2.85
62 63 2.159435 CGTTGGTGGCCTTGCTAATTAC 60.159 50.000 3.32 0.00 0.00 1.89
63 64 2.088423 CGTTGGTGGCCTTGCTAATTA 58.912 47.619 3.32 0.00 0.00 1.40
64 65 0.887933 CGTTGGTGGCCTTGCTAATT 59.112 50.000 3.32 0.00 0.00 1.40
65 66 0.965363 CCGTTGGTGGCCTTGCTAAT 60.965 55.000 3.32 0.00 0.00 1.73
66 67 1.602323 CCGTTGGTGGCCTTGCTAA 60.602 57.895 3.32 0.00 0.00 3.09
67 68 2.033448 CCGTTGGTGGCCTTGCTA 59.967 61.111 3.32 0.00 0.00 3.49
68 69 4.204028 ACCGTTGGTGGCCTTGCT 62.204 61.111 3.32 0.00 32.98 3.91
97 98 4.980903 GTTGCACCGCGCCACAAG 62.981 66.667 0.00 0.00 41.33 3.16
100 101 4.341502 AATGTTGCACCGCGCCAC 62.342 61.111 0.00 0.00 41.33 5.01
101 102 4.340019 CAATGTTGCACCGCGCCA 62.340 61.111 0.00 0.00 41.33 5.69
110 111 4.551217 CAAACAGTTGATGTGCAATGTTGC 60.551 41.667 10.66 10.66 43.00 4.17
111 112 4.804665 TCAAACAGTTGATGTGCAATGTTG 59.195 37.500 0.00 0.00 43.00 3.33
112 113 4.805192 GTCAAACAGTTGATGTGCAATGTT 59.195 37.500 0.00 0.00 45.38 2.71
113 114 4.362279 GTCAAACAGTTGATGTGCAATGT 58.638 39.130 0.00 0.00 45.38 2.71
114 115 3.422876 CGTCAAACAGTTGATGTGCAATG 59.577 43.478 0.00 0.00 45.38 2.82
115 116 3.314913 TCGTCAAACAGTTGATGTGCAAT 59.685 39.130 8.17 0.00 46.65 3.56
116 117 2.680339 TCGTCAAACAGTTGATGTGCAA 59.320 40.909 8.17 0.00 46.65 4.08
117 118 2.284190 TCGTCAAACAGTTGATGTGCA 58.716 42.857 8.17 0.00 46.65 4.57
118 119 3.332761 TTCGTCAAACAGTTGATGTGC 57.667 42.857 8.17 0.00 46.65 4.57
119 120 3.718864 CGTTTCGTCAAACAGTTGATGTG 59.281 43.478 8.17 0.00 46.65 3.21
120 121 3.372822 ACGTTTCGTCAAACAGTTGATGT 59.627 39.130 8.17 0.00 46.65 3.06
134 135 3.056393 TCATCCCATTGTAGACGTTTCGT 60.056 43.478 0.00 0.00 45.10 3.85
135 136 3.517602 TCATCCCATTGTAGACGTTTCG 58.482 45.455 0.00 0.00 0.00 3.46
136 137 5.584649 TCATTCATCCCATTGTAGACGTTTC 59.415 40.000 0.00 0.00 0.00 2.78
137 138 5.496556 TCATTCATCCCATTGTAGACGTTT 58.503 37.500 0.00 0.00 0.00 3.60
138 139 5.097742 TCATTCATCCCATTGTAGACGTT 57.902 39.130 0.00 0.00 0.00 3.99
139 140 4.753516 TCATTCATCCCATTGTAGACGT 57.246 40.909 0.00 0.00 0.00 4.34
140 141 6.316140 TCTTTTCATTCATCCCATTGTAGACG 59.684 38.462 0.00 0.00 0.00 4.18
141 142 7.630242 TCTTTTCATTCATCCCATTGTAGAC 57.370 36.000 0.00 0.00 0.00 2.59
142 143 8.648698 TTTCTTTTCATTCATCCCATTGTAGA 57.351 30.769 0.00 0.00 0.00 2.59
145 146 9.258629 TCTATTTCTTTTCATTCATCCCATTGT 57.741 29.630 0.00 0.00 0.00 2.71
160 161 9.603921 CCACATGGCAATATTTCTATTTCTTTT 57.396 29.630 0.00 0.00 0.00 2.27
161 162 8.980596 TCCACATGGCAATATTTCTATTTCTTT 58.019 29.630 0.00 0.00 34.44 2.52
162 163 8.416329 GTCCACATGGCAATATTTCTATTTCTT 58.584 33.333 0.00 0.00 34.44 2.52
163 164 7.560991 TGTCCACATGGCAATATTTCTATTTCT 59.439 33.333 0.00 0.00 34.44 2.52
164 165 7.715657 TGTCCACATGGCAATATTTCTATTTC 58.284 34.615 0.00 0.00 34.44 2.17
165 166 7.658525 TGTCCACATGGCAATATTTCTATTT 57.341 32.000 0.00 0.00 34.44 1.40
166 167 7.844493 ATGTCCACATGGCAATATTTCTATT 57.156 32.000 0.00 0.00 34.83 1.73
181 182 0.690192 TGACCGGTTCATGTCCACAT 59.310 50.000 9.42 0.00 36.96 3.21
182 183 0.470341 TTGACCGGTTCATGTCCACA 59.530 50.000 9.42 0.00 32.84 4.17
183 184 1.600023 TTTGACCGGTTCATGTCCAC 58.400 50.000 9.42 0.00 32.84 4.02
184 185 2.350057 TTTTGACCGGTTCATGTCCA 57.650 45.000 9.42 0.00 32.84 4.02
185 186 2.287970 GGTTTTTGACCGGTTCATGTCC 60.288 50.000 9.42 4.72 39.00 4.02
186 187 3.007979 GGTTTTTGACCGGTTCATGTC 57.992 47.619 9.42 0.00 39.00 3.06
454 512 8.267183 GGAATTGATGGGGATTTTATGAAGTTT 58.733 33.333 0.00 0.00 0.00 2.66
544 605 0.034186 TCTCCCTCCGCATTTGCATT 60.034 50.000 3.13 0.00 42.21 3.56
571 632 0.404426 ACCTGCTCCCCAAAGGTTAC 59.596 55.000 0.00 0.00 41.65 2.50
642 708 7.486802 ACCGAGAGAATTCGTTTTAAGAAAA 57.513 32.000 0.00 0.00 38.88 2.29
643 709 7.486802 AACCGAGAGAATTCGTTTTAAGAAA 57.513 32.000 0.00 0.00 38.88 2.52
644 710 7.486802 AAACCGAGAGAATTCGTTTTAAGAA 57.513 32.000 0.00 0.00 34.17 2.52
646 712 8.277713 TGTTAAACCGAGAGAATTCGTTTTAAG 58.722 33.333 11.85 0.00 43.29 1.85
649 715 6.607735 TGTTAAACCGAGAGAATTCGTTTT 57.392 33.333 11.85 0.73 38.46 2.43
653 719 5.022021 GCAATGTTAAACCGAGAGAATTCG 58.978 41.667 0.00 0.00 40.18 3.34
656 722 4.330074 CGAGCAATGTTAAACCGAGAGAAT 59.670 41.667 0.00 0.00 0.00 2.40
660 726 3.034721 ACGAGCAATGTTAAACCGAGA 57.965 42.857 0.00 0.00 0.00 4.04
661 727 3.059188 ACAACGAGCAATGTTAAACCGAG 60.059 43.478 0.00 0.00 0.00 4.63
711 779 4.451435 TCGTGCACACATTTTATTCCGTTA 59.549 37.500 18.64 0.00 0.00 3.18
712 780 3.251245 TCGTGCACACATTTTATTCCGTT 59.749 39.130 18.64 0.00 0.00 4.44
713 781 2.809119 TCGTGCACACATTTTATTCCGT 59.191 40.909 18.64 0.00 0.00 4.69
714 782 3.160545 GTCGTGCACACATTTTATTCCG 58.839 45.455 18.64 0.00 0.00 4.30
805 888 4.394439 TGCCTTTTTGTTTTAGGACACC 57.606 40.909 0.00 0.00 0.00 4.16
866 4407 2.049433 CGTCCACGGTCAGGTCAC 60.049 66.667 0.00 0.00 35.37 3.67
893 4452 2.175202 GAGTGGTGGAGTGAGATCTGT 58.825 52.381 0.00 0.00 0.00 3.41
1162 4726 2.861360 GCAGCAGCAACTGGAAGAAAAG 60.861 50.000 7.95 0.00 41.58 2.27
1163 4727 1.067516 GCAGCAGCAACTGGAAGAAAA 59.932 47.619 7.95 0.00 41.58 2.29
1299 4907 2.185310 GAAGATGCCGGTGGTCCACT 62.185 60.000 21.40 0.75 34.40 4.00
1319 4927 2.032681 GGGGTCTTCAGCGCAACT 59.967 61.111 11.47 0.00 33.26 3.16
1437 5546 4.155099 ACCACGAATTTTGAATGTGCGATA 59.845 37.500 0.00 0.00 0.00 2.92
1572 5699 2.679837 GTGGAATGTGTGTGATAGCCAG 59.320 50.000 0.00 0.00 0.00 4.85
1590 5717 3.668447 ACATCTAGTTGCTGAGTTGTGG 58.332 45.455 0.51 0.00 0.00 4.17
1752 5880 7.661847 ACATGTTGTTCCTCTTTTCTTACTAGG 59.338 37.037 0.00 0.00 0.00 3.02
1881 6020 6.819284 TCCAAAGAAACATCTTTCATGCTTT 58.181 32.000 1.01 0.00 38.67 3.51
2101 6242 6.259638 GTTTGTTCGTTGATTAAGTTCACCA 58.740 36.000 0.00 0.00 0.00 4.17
2256 6405 7.593644 GGTCCACATTACAAATTTGAGTTACAC 59.406 37.037 24.64 10.28 0.00 2.90
2383 6562 6.949352 ATACATCTGCTAAAAATGTGGGAG 57.051 37.500 0.00 0.00 35.38 4.30
2651 6834 8.705594 CCTCCGTCCCATAATATAAGATGTTAT 58.294 37.037 0.29 0.29 33.25 1.89
2652 6835 7.125204 CCCTCCGTCCCATAATATAAGATGTTA 59.875 40.741 0.00 0.00 0.00 2.41
2653 6836 6.070194 CCCTCCGTCCCATAATATAAGATGTT 60.070 42.308 0.00 0.00 0.00 2.71
2654 6837 5.425539 CCCTCCGTCCCATAATATAAGATGT 59.574 44.000 0.00 0.00 0.00 3.06
2655 6838 5.661312 TCCCTCCGTCCCATAATATAAGATG 59.339 44.000 0.00 0.00 0.00 2.90
2656 6839 5.850278 TCCCTCCGTCCCATAATATAAGAT 58.150 41.667 0.00 0.00 0.00 2.40
2986 7789 6.127535 CGGGAAAGTGTACCTGTAGAAGAATA 60.128 42.308 0.00 0.00 0.00 1.75
3197 8285 8.792830 AGCAGTAATACATATGAAAACTGTGT 57.207 30.769 21.58 13.29 36.20 3.72
3348 8436 1.071471 AAGTGCAGGGTCTTGTCCG 59.929 57.895 0.00 0.00 0.00 4.79
3381 8469 3.431207 GCTAATGCAATGCCACCTTCAAT 60.431 43.478 1.53 0.00 39.41 2.57
3445 8533 1.064463 GGCCTTCACCAATCAGGATCA 60.064 52.381 0.00 0.00 41.22 2.92
3739 8896 3.676646 GCCAAGCAAAAATGTCATGAGAC 59.323 43.478 0.00 0.00 45.19 3.36
3989 9184 2.240667 AGCAGTGGACTATGCAAGGATT 59.759 45.455 0.00 0.00 45.01 3.01
4015 9210 0.386858 GACAGTTCGCGCAGTAGTGA 60.387 55.000 8.75 0.00 0.00 3.41
4091 9287 1.674441 CTAACCCGTAGCGATGACTGA 59.326 52.381 0.00 0.00 0.00 3.41
4092 9288 1.864435 GCTAACCCGTAGCGATGACTG 60.864 57.143 0.00 0.00 45.71 3.51
4192 9390 5.653769 CCCAACAATTCCATCACAACTAGAT 59.346 40.000 0.00 0.00 0.00 1.98
4212 9410 1.546773 CCCTGGTCATCGAAAACCCAA 60.547 52.381 14.90 0.00 34.47 4.12
4217 9415 1.345089 TCGTTCCCTGGTCATCGAAAA 59.655 47.619 0.00 0.00 0.00 2.29
4234 9432 1.337823 ACTCAGGCAAAGCGTATTCGT 60.338 47.619 0.00 0.00 39.49 3.85
4269 9467 4.717313 GGCGGTCCAGGGACAACC 62.717 72.222 19.43 15.28 46.20 3.77
4290 9488 4.272489 CCGTATATATAAGGGGACGACCA 58.728 47.826 14.95 0.00 42.91 4.02
4320 9518 1.205417 GGGATTCTGTAAACCGACGGA 59.795 52.381 23.38 0.00 32.75 4.69
4346 9544 0.104120 CCGGACACGATTATGAGCCA 59.896 55.000 0.00 0.00 44.60 4.75
4620 9818 9.874205 TGTGAAGATGTTGAAGAAGAAATTTTT 57.126 25.926 0.00 0.00 0.00 1.94
4867 10068 3.068691 CGAAGAGGCACGAGGGGA 61.069 66.667 0.00 0.00 0.00 4.81
4945 10146 1.227999 CGGCCTTTGTCGAAGCAGAA 61.228 55.000 0.00 0.00 43.95 3.02
5009 10210 1.103803 TACTAGTGCAGGAGGAAGCG 58.896 55.000 5.39 0.00 0.00 4.68
5024 10225 3.946558 GCGAGAAGAAGAGGGACTTACTA 59.053 47.826 0.00 0.00 41.55 1.82
5132 10333 5.844301 AATTACAAAAGGCGCTGAAAATG 57.156 34.783 7.64 2.04 0.00 2.32
5152 10353 9.508642 CCTTAACAAGAAGAAAGGAGTCTAAAT 57.491 33.333 0.00 0.00 40.85 1.40
5194 10395 7.954788 AAGTTCAGTAAGTTCAGATGAGTTC 57.045 36.000 0.00 0.00 0.00 3.01
5476 10677 9.403110 CAACTATACAACGGTATAAGGATACAC 57.597 37.037 0.00 0.00 40.87 2.90
5649 10850 1.206878 CCCTCCAGTGGATGACATCA 58.793 55.000 13.56 1.04 0.00 3.07
5692 10893 2.266055 CTCTCCGTCCTTGGGTGC 59.734 66.667 0.00 0.00 0.00 5.01
5714 10915 2.349590 TGAGATGATCAGCAAACACGG 58.650 47.619 14.38 0.00 32.77 4.94
5840 11041 2.421619 CCTCACAGAAGACTTGGAAGC 58.578 52.381 0.00 0.00 0.00 3.86
5926 11127 3.669939 ATTGGGTCCATCCGAGAATTT 57.330 42.857 0.00 0.00 37.00 1.82
5928 11129 2.037251 CGTATTGGGTCCATCCGAGAAT 59.963 50.000 0.00 0.00 37.00 2.40
6146 11347 3.205282 AGGAGCATAGTTGGCCCTTTATT 59.795 43.478 0.00 0.00 30.81 1.40
6148 11349 2.172717 GAGGAGCATAGTTGGCCCTTTA 59.827 50.000 0.00 0.00 33.78 1.85
6198 11399 2.557317 TCAACTCCTGTCAAACCGTTC 58.443 47.619 0.00 0.00 0.00 3.95
6231 11432 4.263243 GGCAGAATACTCCAGCTTATCCAT 60.263 45.833 0.00 0.00 0.00 3.41
6265 11466 0.107643 TCACACATCAAACCGGAGCA 59.892 50.000 9.46 0.00 0.00 4.26
6340 11541 1.709578 ACAGCCTCAGTGACTTCTGA 58.290 50.000 14.81 0.00 41.40 3.27
6363 11564 1.533731 TCCGGTTCGTTCAGCATTTTC 59.466 47.619 0.00 0.00 0.00 2.29
6366 11567 0.673644 CCTCCGGTTCGTTCAGCATT 60.674 55.000 0.00 0.00 0.00 3.56
6369 11570 3.119096 GCCTCCGGTTCGTTCAGC 61.119 66.667 0.00 0.00 0.00 4.26
6423 11624 0.102120 CAGCTGGCGGTTTGTTGAAA 59.898 50.000 5.57 0.00 0.00 2.69
6435 11636 8.558973 AAGATTATATGATTCTTACAGCTGGC 57.441 34.615 19.93 0.00 0.00 4.85
6508 11710 2.502947 TGGATCATCACCCTGTCAGAAG 59.497 50.000 0.00 0.00 0.00 2.85
6529 11731 3.636764 GTGGTGGTTTCTTGTTCCAGAAT 59.363 43.478 0.00 0.00 32.69 2.40
6548 11750 1.333619 CTTGACCGGTTTGTCTTGTGG 59.666 52.381 9.42 0.00 36.21 4.17
6564 11766 1.083489 CGGTTTATCTTGCGGCTTGA 58.917 50.000 0.00 0.00 0.00 3.02
6642 11844 0.975556 TGGTAGCTCGGAGGATGCAA 60.976 55.000 7.20 0.00 0.00 4.08
6655 11857 1.202463 ACATCGTCATCAGCTGGTAGC 60.202 52.381 15.13 1.62 42.84 3.58
6689 11891 5.249780 AGAGAGTCAAGTTCTACCTCTGA 57.750 43.478 0.00 0.00 32.85 3.27
6784 11986 3.612860 CGAAAAGAATGGTGACCTCTACG 59.387 47.826 2.11 2.50 0.00 3.51
6793 11995 2.161410 TGAATCGGCGAAAAGAATGGTG 59.839 45.455 15.93 0.00 0.00 4.17
6795 11997 2.677836 TCTGAATCGGCGAAAAGAATGG 59.322 45.455 15.93 0.00 0.00 3.16
6804 12006 1.939974 CAAAGGATCTGAATCGGCGA 58.060 50.000 13.87 13.87 32.24 5.54
6806 12008 0.665298 GGCAAAGGATCTGAATCGGC 59.335 55.000 0.00 0.00 32.24 5.54
6821 12023 6.202570 GCTTGACAGATTTTTAATGTTGGCAA 59.797 34.615 0.00 0.00 33.00 4.52
6826 12028 7.042791 CGGTTTGCTTGACAGATTTTTAATGTT 60.043 33.333 0.00 0.00 0.00 2.71
6831 12033 4.580995 TCCGGTTTGCTTGACAGATTTTTA 59.419 37.500 0.00 0.00 0.00 1.52
6839 12041 1.757682 ACTTTCCGGTTTGCTTGACA 58.242 45.000 0.00 0.00 0.00 3.58
6843 12045 7.045416 AGAAAATTTTACTTTCCGGTTTGCTT 58.955 30.769 2.75 0.00 34.00 3.91
6999 12202 5.433051 TCAATGGGATAAGAGACCTCCAATT 59.567 40.000 0.00 0.00 33.75 2.32
7002 12205 4.007581 TCAATGGGATAAGAGACCTCCA 57.992 45.455 0.00 0.00 0.00 3.86
7003 12206 5.782845 AGTATCAATGGGATAAGAGACCTCC 59.217 44.000 0.00 0.00 40.11 4.30
7092 12295 2.562738 TCGCCAGAAGATGAGTGAGAAA 59.437 45.455 0.00 0.00 0.00 2.52
7240 12443 1.777272 GCCTTCTTCCTGGATATGGGT 59.223 52.381 0.00 0.00 0.00 4.51
7245 12448 1.343075 ACCGAGCCTTCTTCCTGGATA 60.343 52.381 0.00 0.00 0.00 2.59
7247 12450 0.836400 AACCGAGCCTTCTTCCTGGA 60.836 55.000 0.00 0.00 0.00 3.86
7252 12455 4.142665 GGTTTATTCAACCGAGCCTTCTTC 60.143 45.833 0.00 0.00 45.98 2.87
7313 12516 2.027745 TGTTGGTCTCTTCAGGATCTGC 60.028 50.000 0.00 0.00 0.00 4.26
7342 12545 1.408266 GGCGGTGGGTCATTCAGTATT 60.408 52.381 0.00 0.00 0.00 1.89
7375 12578 1.509644 CTGCCTGCTCAGCAACGAAA 61.510 55.000 0.00 0.00 40.35 3.46
7519 12722 5.698089 AGTGCCAGTAATCATAATGTCATCG 59.302 40.000 0.00 0.00 0.00 3.84
7617 12820 0.253894 GGGCGGGTTACACCAGTAAT 59.746 55.000 0.00 0.00 41.86 1.89
7828 13031 1.375326 GGTTCTCAAAGTCCCGGCT 59.625 57.895 0.00 0.00 0.00 5.52
7900 13103 2.879026 GGCTACCGATTTCATCTTTCCC 59.121 50.000 0.00 0.00 0.00 3.97
7903 13106 3.545703 CCTGGCTACCGATTTCATCTTT 58.454 45.455 0.00 0.00 0.00 2.52
7909 13112 2.417719 CTATGCCTGGCTACCGATTTC 58.582 52.381 21.03 0.00 0.00 2.17
7939 13142 1.749258 GGGTTTCGATGACCAGGGC 60.749 63.158 17.29 0.00 38.98 5.19
7999 13203 1.815757 ATACTGGTTCGGCCCCTTAT 58.184 50.000 0.00 0.00 36.04 1.73
8040 13244 7.476153 ACTAGGAAGCTTAAAGGGGTTAAAAT 58.524 34.615 0.00 0.00 31.22 1.82
8100 13304 0.036388 GGAAAGGTCACGGCAGATGA 60.036 55.000 0.00 0.00 0.00 2.92
8115 13319 2.539338 GCGCCAACTGTCGTGGAAA 61.539 57.895 0.00 0.00 0.00 3.13
8194 13398 4.564110 GGCCCACAGCGTATCCCC 62.564 72.222 0.00 0.00 45.17 4.81
8234 13438 4.385358 TGCATCGTTGATGTAGAGCTTA 57.615 40.909 8.44 0.00 41.60 3.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.