Multiple sequence alignment - TraesCS1D01G221700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G221700 chr1D 100.000 4837 0 0 1 4837 309564505 309569341 0.000000e+00 8933.0
1 TraesCS1D01G221700 chr1D 97.647 85 2 0 503 587 323935495 323935579 3.900000e-31 147.0
2 TraesCS1D01G221700 chr1D 90.110 91 9 0 497 587 483674561 483674651 8.500000e-23 119.0
3 TraesCS1D01G221700 chr1B 94.200 2362 94 15 659 3001 419200854 419203191 0.000000e+00 3563.0
4 TraesCS1D01G221700 chr1B 91.268 1672 117 19 3050 4707 419203148 419204804 0.000000e+00 2252.0
5 TraesCS1D01G221700 chr1B 94.505 364 20 0 1 364 603523279 603523642 3.270000e-156 562.0
6 TraesCS1D01G221700 chr1B 93.043 115 8 0 390 504 603523641 603523755 8.330000e-38 169.0
7 TraesCS1D01G221700 chr1B 78.322 143 22 8 4571 4710 431000601 431000465 3.100000e-12 84.2
8 TraesCS1D01G221700 chr1A 96.036 2195 53 20 678 2847 389061253 389063438 0.000000e+00 3541.0
9 TraesCS1D01G221700 chr1A 93.619 1144 47 15 2851 3994 389063415 389064532 0.000000e+00 1685.0
10 TraesCS1D01G221700 chr1A 91.851 859 36 9 3992 4837 389064613 389065450 0.000000e+00 1168.0
11 TraesCS1D01G221700 chr3D 93.901 951 50 5 2013 2963 188627693 188626751 0.000000e+00 1428.0
12 TraesCS1D01G221700 chr3D 93.476 843 47 5 1075 1911 188628540 188627700 0.000000e+00 1245.0
13 TraesCS1D01G221700 chr3D 96.716 670 22 0 1655 2324 73325952 73325283 0.000000e+00 1116.0
14 TraesCS1D01G221700 chr3D 92.784 194 13 1 1075 1267 73326144 73325951 3.690000e-71 279.0
15 TraesCS1D01G221700 chr3D 93.103 87 6 0 502 588 526509296 526509382 1.410000e-25 128.0
16 TraesCS1D01G221700 chr3D 92.135 89 7 0 500 588 121985537 121985625 5.080000e-25 126.0
17 TraesCS1D01G221700 chr3D 92.135 89 7 0 500 588 475310503 475310591 5.080000e-25 126.0
18 TraesCS1D01G221700 chr3D 96.154 52 2 0 2909 2960 188626717 188626666 8.630000e-13 86.1
19 TraesCS1D01G221700 chr3D 100.000 28 0 0 3024 3051 42883710 42883683 9.000000e-03 52.8
20 TraesCS1D01G221700 chr5D 96.667 330 11 0 165 494 544135916 544135587 2.540000e-152 549.0
21 TraesCS1D01G221700 chr5D 94.083 169 10 0 1 169 544138557 544138389 1.730000e-64 257.0
22 TraesCS1D01G221700 chr5D 92.222 90 6 1 499 588 267846594 267846682 5.080000e-25 126.0
23 TraesCS1D01G221700 chr5D 93.023 86 5 1 502 587 240371839 240371755 1.830000e-24 124.0
24 TraesCS1D01G221700 chr6A 81.034 174 29 2 4536 4707 615675279 615675450 8.440000e-28 135.0
25 TraesCS1D01G221700 chr7D 93.182 88 6 0 500 587 64381297 64381210 3.930000e-26 130.0
26 TraesCS1D01G221700 chr6D 83.571 140 20 2 4571 4710 37679998 37680134 1.410000e-25 128.0
27 TraesCS1D01G221700 chr6D 80.240 167 27 4 4544 4707 470859105 470859268 2.360000e-23 121.0
28 TraesCS1D01G221700 chr5B 89.000 100 9 2 500 598 103464864 103464766 6.570000e-24 122.0
29 TraesCS1D01G221700 chr2D 75.610 246 49 6 4461 4705 13183278 13183043 1.420000e-20 111.0
30 TraesCS1D01G221700 chr2D 85.047 107 12 3 4604 4710 424018166 424018064 6.620000e-19 106.0
31 TraesCS1D01G221700 chr2A 83.784 111 13 5 4598 4707 564215997 564216103 3.080000e-17 100.0
32 TraesCS1D01G221700 chr2A 100.000 29 0 0 3026 3054 199101238 199101210 2.000000e-03 54.7
33 TraesCS1D01G221700 chr7B 90.698 43 4 0 4456 4498 55758697 55758739 1.880000e-04 58.4
34 TraesCS1D01G221700 chr7B 100.000 28 0 0 3026 3053 257017419 257017392 9.000000e-03 52.8
35 TraesCS1D01G221700 chr5A 100.000 29 0 0 4461 4489 632201758 632201786 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G221700 chr1D 309564505 309569341 4836 False 8933.000000 8933 100.000000 1 4837 1 chr1D.!!$F1 4836
1 TraesCS1D01G221700 chr1B 419200854 419204804 3950 False 2907.500000 3563 92.734000 659 4707 2 chr1B.!!$F1 4048
2 TraesCS1D01G221700 chr1A 389061253 389065450 4197 False 2131.333333 3541 93.835333 678 4837 3 chr1A.!!$F1 4159
3 TraesCS1D01G221700 chr3D 188626666 188628540 1874 True 919.700000 1428 94.510333 1075 2963 3 chr3D.!!$R3 1888
4 TraesCS1D01G221700 chr3D 73325283 73326144 861 True 697.500000 1116 94.750000 1075 2324 2 chr3D.!!$R2 1249
5 TraesCS1D01G221700 chr5D 544135587 544138557 2970 True 403.000000 549 95.375000 1 494 2 chr5D.!!$R2 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.099791 GGCTGTCTCTCGCACTAGAC 59.900 60.000 0.00 0.00 42.04 2.59 F
588 589 0.106819 TACGGGACTGAGGGAGTAGC 60.107 60.000 0.00 0.00 33.83 3.58 F
592 593 0.686112 GGACTGAGGGAGTAGCAGCT 60.686 60.000 0.00 0.00 33.83 4.24 F
673 674 0.896019 CCTCGATCCGGTATCCAGCT 60.896 60.000 0.00 0.00 0.00 4.24 F
1204 1221 1.077005 TCAGGGATTTTGGGGGTTCTG 59.923 52.381 0.00 0.00 0.00 3.02 F
2861 4617 2.105649 TGGCATGCCATATTTACCTCGA 59.894 45.455 35.59 7.99 41.89 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1471 1492 1.741706 CCTAGACAAACATGCCTGCTG 59.258 52.381 0.00 0.00 0.0 4.41 R
2337 3567 2.488153 GCCGGCTTTAGAAGAACACATT 59.512 45.455 22.15 0.00 0.0 2.71 R
2451 3681 8.771920 TGAACTATGGTAATACTTCAACACAG 57.228 34.615 0.00 0.00 0.0 3.66 R
2704 3934 5.549347 TGGCAAACAAATAAAGCACATCAT 58.451 33.333 0.00 0.00 0.0 2.45 R
2867 4623 4.646960 TGCGTATTTCATTTGACATGTCG 58.353 39.130 20.54 6.74 0.0 4.35 R
4544 6498 0.252197 AGTGCGGACATTTAGGGGAC 59.748 55.000 10.52 0.00 0.0 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 2.032634 GCGATTTGCCGAGACCACA 61.033 57.895 0.00 0.00 37.76 4.17
126 127 1.369091 GCGATTTGCCGAGACCACAT 61.369 55.000 0.00 0.00 37.76 3.21
149 150 1.066430 GTATGTTTCTGGGTGCCTCGA 60.066 52.381 0.00 0.00 0.00 4.04
169 170 1.277842 ACGGTGGCTGTTGATATGACA 59.722 47.619 0.00 0.00 0.00 3.58
170 171 2.290008 ACGGTGGCTGTTGATATGACAA 60.290 45.455 0.00 0.00 0.00 3.18
171 172 2.746904 CGGTGGCTGTTGATATGACAAA 59.253 45.455 0.00 0.00 0.00 2.83
172 173 3.426159 CGGTGGCTGTTGATATGACAAAC 60.426 47.826 0.00 0.00 0.00 2.93
173 174 3.119495 GGTGGCTGTTGATATGACAAACC 60.119 47.826 0.00 0.00 0.00 3.27
174 175 3.088532 TGGCTGTTGATATGACAAACCC 58.911 45.455 0.00 0.00 0.00 4.11
176 177 3.129287 GGCTGTTGATATGACAAACCCAG 59.871 47.826 0.00 0.00 0.00 4.45
177 178 4.009675 GCTGTTGATATGACAAACCCAGA 58.990 43.478 0.00 0.00 0.00 3.86
179 180 5.048083 GCTGTTGATATGACAAACCCAGAAA 60.048 40.000 0.00 0.00 0.00 2.52
180 181 6.350445 GCTGTTGATATGACAAACCCAGAAAT 60.350 38.462 0.00 0.00 0.00 2.17
181 182 7.156876 TGTTGATATGACAAACCCAGAAATC 57.843 36.000 0.00 0.00 0.00 2.17
182 183 6.152661 TGTTGATATGACAAACCCAGAAATCC 59.847 38.462 0.00 0.00 0.00 3.01
183 184 6.078456 TGATATGACAAACCCAGAAATCCT 57.922 37.500 0.00 0.00 0.00 3.24
184 185 6.493166 TGATATGACAAACCCAGAAATCCTT 58.507 36.000 0.00 0.00 0.00 3.36
185 186 6.377996 TGATATGACAAACCCAGAAATCCTTG 59.622 38.462 0.00 0.00 0.00 3.61
186 187 4.177537 TGACAAACCCAGAAATCCTTGA 57.822 40.909 0.00 0.00 0.00 3.02
187 188 4.541705 TGACAAACCCAGAAATCCTTGAA 58.458 39.130 0.00 0.00 0.00 2.69
189 190 3.321968 ACAAACCCAGAAATCCTTGAAGC 59.678 43.478 0.00 0.00 0.00 3.86
190 191 2.978156 ACCCAGAAATCCTTGAAGCA 57.022 45.000 0.00 0.00 0.00 3.91
192 193 2.376518 ACCCAGAAATCCTTGAAGCAGA 59.623 45.455 0.00 0.00 0.00 4.26
194 195 3.442977 CCCAGAAATCCTTGAAGCAGAAG 59.557 47.826 0.00 0.00 0.00 2.85
195 196 3.119566 CCAGAAATCCTTGAAGCAGAAGC 60.120 47.826 0.00 0.00 42.56 3.86
219 220 4.200283 CGAGGGGCTGTCTCTCGC 62.200 72.222 19.44 0.00 42.70 5.03
220 221 3.071206 GAGGGGCTGTCTCTCGCA 61.071 66.667 0.00 0.00 0.00 5.10
221 222 3.363844 GAGGGGCTGTCTCTCGCAC 62.364 68.421 0.00 0.00 0.00 5.34
222 223 3.386237 GGGGCTGTCTCTCGCACT 61.386 66.667 0.00 0.00 0.00 4.40
223 224 2.052690 GGGGCTGTCTCTCGCACTA 61.053 63.158 0.00 0.00 0.00 2.74
224 225 1.435515 GGGCTGTCTCTCGCACTAG 59.564 63.158 0.00 0.00 0.00 2.57
225 226 1.032657 GGGCTGTCTCTCGCACTAGA 61.033 60.000 0.00 0.00 0.00 2.43
226 227 0.099791 GGCTGTCTCTCGCACTAGAC 59.900 60.000 0.00 0.00 42.04 2.59
227 228 0.099791 GCTGTCTCTCGCACTAGACC 59.900 60.000 0.00 0.00 41.19 3.85
228 229 1.745232 CTGTCTCTCGCACTAGACCT 58.255 55.000 0.00 0.00 41.19 3.85
229 230 1.400142 CTGTCTCTCGCACTAGACCTG 59.600 57.143 0.00 0.00 41.19 4.00
230 231 1.003233 TGTCTCTCGCACTAGACCTGA 59.997 52.381 0.00 0.00 41.19 3.86
231 232 2.085320 GTCTCTCGCACTAGACCTGAA 58.915 52.381 0.00 0.00 36.86 3.02
232 233 2.685897 GTCTCTCGCACTAGACCTGAAT 59.314 50.000 0.00 0.00 36.86 2.57
233 234 2.685388 TCTCTCGCACTAGACCTGAATG 59.315 50.000 0.00 0.00 0.00 2.67
234 235 2.425312 CTCTCGCACTAGACCTGAATGT 59.575 50.000 0.00 0.00 0.00 2.71
235 236 2.826128 TCTCGCACTAGACCTGAATGTT 59.174 45.455 0.00 0.00 0.00 2.71
236 237 3.119459 TCTCGCACTAGACCTGAATGTTC 60.119 47.826 0.00 0.00 0.00 3.18
237 238 2.560981 TCGCACTAGACCTGAATGTTCA 59.439 45.455 0.00 0.00 35.57 3.18
252 253 7.369803 TGAATGTTCAGAAAGTTCAGATAGC 57.630 36.000 7.17 0.00 32.50 2.97
253 254 6.936335 TGAATGTTCAGAAAGTTCAGATAGCA 59.064 34.615 7.17 0.00 32.50 3.49
254 255 7.445096 TGAATGTTCAGAAAGTTCAGATAGCAA 59.555 33.333 7.17 0.00 32.50 3.91
255 256 6.545504 TGTTCAGAAAGTTCAGATAGCAAC 57.454 37.500 0.00 0.00 0.00 4.17
256 257 6.054941 TGTTCAGAAAGTTCAGATAGCAACA 58.945 36.000 0.00 0.00 0.00 3.33
257 258 6.203530 TGTTCAGAAAGTTCAGATAGCAACAG 59.796 38.462 0.00 0.00 0.00 3.16
258 259 6.101650 TCAGAAAGTTCAGATAGCAACAGA 57.898 37.500 0.00 0.00 0.00 3.41
259 260 6.705302 TCAGAAAGTTCAGATAGCAACAGAT 58.295 36.000 0.00 0.00 0.00 2.90
260 261 7.164122 TCAGAAAGTTCAGATAGCAACAGATT 58.836 34.615 0.00 0.00 0.00 2.40
261 262 7.118825 TCAGAAAGTTCAGATAGCAACAGATTG 59.881 37.037 0.00 0.00 38.99 2.67
270 271 3.502237 CAACAGATTGCTTGGCCAC 57.498 52.632 3.88 0.00 0.00 5.01
271 272 0.675083 CAACAGATTGCTTGGCCACA 59.325 50.000 3.88 0.00 0.00 4.17
272 273 1.068895 CAACAGATTGCTTGGCCACAA 59.931 47.619 3.88 8.36 34.87 3.33
273 274 1.636148 ACAGATTGCTTGGCCACAAT 58.364 45.000 18.76 18.76 39.16 2.71
274 275 1.972795 ACAGATTGCTTGGCCACAATT 59.027 42.857 19.47 9.40 36.65 2.32
275 276 3.164268 ACAGATTGCTTGGCCACAATTA 58.836 40.909 19.47 0.00 36.65 1.40
276 277 3.577848 ACAGATTGCTTGGCCACAATTAA 59.422 39.130 19.47 6.34 36.65 1.40
277 278 4.040217 ACAGATTGCTTGGCCACAATTAAA 59.960 37.500 19.47 4.38 36.65 1.52
278 279 4.389687 CAGATTGCTTGGCCACAATTAAAC 59.610 41.667 19.47 9.33 36.65 2.01
279 280 3.827008 TTGCTTGGCCACAATTAAACA 57.173 38.095 3.88 0.00 35.73 2.83
280 281 4.348863 TTGCTTGGCCACAATTAAACAT 57.651 36.364 3.88 0.00 35.73 2.71
281 282 3.661944 TGCTTGGCCACAATTAAACATG 58.338 40.909 3.88 0.00 35.73 3.21
282 283 2.416202 GCTTGGCCACAATTAAACATGC 59.584 45.455 3.88 0.00 35.73 4.06
283 284 2.758736 TGGCCACAATTAAACATGCC 57.241 45.000 0.00 0.00 37.90 4.40
284 285 1.973515 TGGCCACAATTAAACATGCCA 59.026 42.857 0.00 0.00 44.55 4.92
285 286 2.289320 TGGCCACAATTAAACATGCCAC 60.289 45.455 0.00 0.00 42.10 5.01
286 287 2.289320 GGCCACAATTAAACATGCCACA 60.289 45.455 0.00 0.00 37.36 4.17
287 288 2.995258 GCCACAATTAAACATGCCACAG 59.005 45.455 0.00 0.00 0.00 3.66
288 289 3.305950 GCCACAATTAAACATGCCACAGA 60.306 43.478 0.00 0.00 0.00 3.41
289 290 4.798924 GCCACAATTAAACATGCCACAGAA 60.799 41.667 0.00 0.00 0.00 3.02
290 291 4.685628 CCACAATTAAACATGCCACAGAAC 59.314 41.667 0.00 0.00 0.00 3.01
291 292 5.509501 CCACAATTAAACATGCCACAGAACT 60.510 40.000 0.00 0.00 0.00 3.01
292 293 5.984926 CACAATTAAACATGCCACAGAACTT 59.015 36.000 0.00 0.00 0.00 2.66
293 294 6.479660 CACAATTAAACATGCCACAGAACTTT 59.520 34.615 0.00 0.00 0.00 2.66
294 295 7.651304 CACAATTAAACATGCCACAGAACTTTA 59.349 33.333 0.00 0.00 0.00 1.85
295 296 7.651704 ACAATTAAACATGCCACAGAACTTTAC 59.348 33.333 0.00 0.00 0.00 2.01
296 297 6.701145 TTAAACATGCCACAGAACTTTACA 57.299 33.333 0.00 0.00 0.00 2.41
297 298 5.789643 AAACATGCCACAGAACTTTACAT 57.210 34.783 0.00 0.00 0.00 2.29
298 299 4.771590 ACATGCCACAGAACTTTACATG 57.228 40.909 0.00 0.00 39.38 3.21
299 300 3.507233 ACATGCCACAGAACTTTACATGG 59.493 43.478 0.00 0.00 38.14 3.66
300 301 2.513753 TGCCACAGAACTTTACATGGG 58.486 47.619 0.00 0.00 0.00 4.00
301 302 1.818674 GCCACAGAACTTTACATGGGG 59.181 52.381 0.00 0.00 39.34 4.96
302 303 2.446435 CCACAGAACTTTACATGGGGG 58.554 52.381 0.00 0.00 32.30 5.40
303 304 1.818674 CACAGAACTTTACATGGGGGC 59.181 52.381 0.00 0.00 0.00 5.80
304 305 1.710809 ACAGAACTTTACATGGGGGCT 59.289 47.619 0.00 0.00 0.00 5.19
305 306 2.916934 ACAGAACTTTACATGGGGGCTA 59.083 45.455 0.00 0.00 0.00 3.93
306 307 3.054361 ACAGAACTTTACATGGGGGCTAG 60.054 47.826 0.00 0.00 0.00 3.42
307 308 2.092375 AGAACTTTACATGGGGGCTAGC 60.092 50.000 6.04 6.04 0.00 3.42
308 309 1.295020 ACTTTACATGGGGGCTAGCA 58.705 50.000 18.24 0.00 0.00 3.49
309 310 1.638589 ACTTTACATGGGGGCTAGCAA 59.361 47.619 18.24 0.00 0.00 3.91
310 311 2.042433 ACTTTACATGGGGGCTAGCAAA 59.958 45.455 18.24 4.79 0.00 3.68
311 312 2.435372 TTACATGGGGGCTAGCAAAG 57.565 50.000 18.24 2.27 0.00 2.77
312 313 1.295020 TACATGGGGGCTAGCAAAGT 58.705 50.000 18.24 8.22 0.00 2.66
313 314 0.323725 ACATGGGGGCTAGCAAAGTG 60.324 55.000 18.24 10.51 0.00 3.16
314 315 1.039233 CATGGGGGCTAGCAAAGTGG 61.039 60.000 18.24 0.00 0.00 4.00
315 316 1.509548 ATGGGGGCTAGCAAAGTGGT 61.510 55.000 18.24 0.00 0.00 4.16
316 317 1.076727 GGGGGCTAGCAAAGTGGTT 59.923 57.895 18.24 0.00 0.00 3.67
317 318 1.250840 GGGGGCTAGCAAAGTGGTTG 61.251 60.000 18.24 0.00 40.50 3.77
318 319 0.539669 GGGGCTAGCAAAGTGGTTGT 60.540 55.000 18.24 0.00 39.63 3.32
319 320 0.598065 GGGCTAGCAAAGTGGTTGTG 59.402 55.000 18.24 0.00 39.63 3.33
320 321 0.598065 GGCTAGCAAAGTGGTTGTGG 59.402 55.000 18.24 0.00 39.63 4.17
321 322 1.604604 GCTAGCAAAGTGGTTGTGGA 58.395 50.000 10.63 0.00 39.63 4.02
322 323 1.537202 GCTAGCAAAGTGGTTGTGGAG 59.463 52.381 10.63 0.00 39.63 3.86
323 324 2.154462 CTAGCAAAGTGGTTGTGGAGG 58.846 52.381 0.00 0.00 39.63 4.30
324 325 0.550914 AGCAAAGTGGTTGTGGAGGA 59.449 50.000 0.00 0.00 39.63 3.71
325 326 0.954452 GCAAAGTGGTTGTGGAGGAG 59.046 55.000 0.00 0.00 39.63 3.69
326 327 1.476833 GCAAAGTGGTTGTGGAGGAGA 60.477 52.381 0.00 0.00 39.63 3.71
327 328 2.815589 GCAAAGTGGTTGTGGAGGAGAT 60.816 50.000 0.00 0.00 39.63 2.75
328 329 3.077359 CAAAGTGGTTGTGGAGGAGATC 58.923 50.000 0.00 0.00 32.08 2.75
329 330 2.030027 AGTGGTTGTGGAGGAGATCA 57.970 50.000 0.00 0.00 0.00 2.92
330 331 2.338809 AGTGGTTGTGGAGGAGATCAA 58.661 47.619 0.00 0.00 0.00 2.57
331 332 2.915604 AGTGGTTGTGGAGGAGATCAAT 59.084 45.455 0.00 0.00 0.00 2.57
332 333 4.104086 AGTGGTTGTGGAGGAGATCAATA 58.896 43.478 0.00 0.00 0.00 1.90
333 334 4.080863 AGTGGTTGTGGAGGAGATCAATAC 60.081 45.833 0.00 0.00 0.00 1.89
334 335 3.199946 TGGTTGTGGAGGAGATCAATACC 59.800 47.826 0.00 0.00 0.00 2.73
335 336 3.199946 GGTTGTGGAGGAGATCAATACCA 59.800 47.826 0.00 0.00 0.00 3.25
336 337 4.324254 GGTTGTGGAGGAGATCAATACCAA 60.324 45.833 0.00 0.00 0.00 3.67
337 338 4.760530 TGTGGAGGAGATCAATACCAAG 57.239 45.455 0.00 0.00 0.00 3.61
338 339 3.118261 TGTGGAGGAGATCAATACCAAGC 60.118 47.826 0.00 0.00 0.00 4.01
339 340 3.135530 GTGGAGGAGATCAATACCAAGCT 59.864 47.826 0.00 0.00 0.00 3.74
340 341 4.345257 GTGGAGGAGATCAATACCAAGCTA 59.655 45.833 0.00 0.00 0.00 3.32
341 342 4.968719 TGGAGGAGATCAATACCAAGCTAA 59.031 41.667 0.00 0.00 0.00 3.09
342 343 5.070981 TGGAGGAGATCAATACCAAGCTAAG 59.929 44.000 0.00 0.00 0.00 2.18
343 344 5.071115 GGAGGAGATCAATACCAAGCTAAGT 59.929 44.000 0.00 0.00 0.00 2.24
344 345 6.408662 GGAGGAGATCAATACCAAGCTAAGTT 60.409 42.308 0.00 0.00 0.00 2.66
345 346 6.963322 AGGAGATCAATACCAAGCTAAGTTT 58.037 36.000 0.00 0.00 0.00 2.66
346 347 6.825721 AGGAGATCAATACCAAGCTAAGTTTG 59.174 38.462 0.00 0.00 0.00 2.93
347 348 6.599638 GGAGATCAATACCAAGCTAAGTTTGT 59.400 38.462 0.00 0.00 0.00 2.83
348 349 7.121315 GGAGATCAATACCAAGCTAAGTTTGTT 59.879 37.037 0.00 0.00 0.00 2.83
349 350 8.045176 AGATCAATACCAAGCTAAGTTTGTTC 57.955 34.615 0.00 1.50 0.00 3.18
350 351 7.665559 AGATCAATACCAAGCTAAGTTTGTTCA 59.334 33.333 0.00 0.00 0.00 3.18
351 352 6.966021 TCAATACCAAGCTAAGTTTGTTCAC 58.034 36.000 0.00 0.00 0.00 3.18
352 353 5.959618 ATACCAAGCTAAGTTTGTTCACC 57.040 39.130 0.00 0.00 0.00 4.02
353 354 3.898482 ACCAAGCTAAGTTTGTTCACCT 58.102 40.909 0.00 0.00 0.00 4.00
354 355 3.883489 ACCAAGCTAAGTTTGTTCACCTC 59.117 43.478 0.00 0.00 0.00 3.85
355 356 3.882888 CCAAGCTAAGTTTGTTCACCTCA 59.117 43.478 0.00 0.00 0.00 3.86
356 357 4.520492 CCAAGCTAAGTTTGTTCACCTCAT 59.480 41.667 0.00 0.00 0.00 2.90
357 358 5.335191 CCAAGCTAAGTTTGTTCACCTCATC 60.335 44.000 0.00 0.00 0.00 2.92
358 359 5.234466 AGCTAAGTTTGTTCACCTCATCT 57.766 39.130 0.00 0.00 0.00 2.90
359 360 4.999950 AGCTAAGTTTGTTCACCTCATCTG 59.000 41.667 0.00 0.00 0.00 2.90
360 361 4.997395 GCTAAGTTTGTTCACCTCATCTGA 59.003 41.667 0.00 0.00 0.00 3.27
361 362 5.470098 GCTAAGTTTGTTCACCTCATCTGAA 59.530 40.000 0.00 0.00 0.00 3.02
362 363 5.757850 AAGTTTGTTCACCTCATCTGAAC 57.242 39.130 4.65 4.65 45.28 3.18
363 364 5.041191 AGTTTGTTCACCTCATCTGAACT 57.959 39.130 11.47 0.00 45.28 3.01
364 365 5.440610 AGTTTGTTCACCTCATCTGAACTT 58.559 37.500 11.47 0.00 45.28 2.66
365 366 6.591935 AGTTTGTTCACCTCATCTGAACTTA 58.408 36.000 11.47 0.00 45.28 2.24
366 367 6.483640 AGTTTGTTCACCTCATCTGAACTTAC 59.516 38.462 11.47 9.30 45.28 2.34
367 368 4.556233 TGTTCACCTCATCTGAACTTACG 58.444 43.478 11.47 0.00 45.28 3.18
368 369 3.232213 TCACCTCATCTGAACTTACGC 57.768 47.619 0.00 0.00 0.00 4.42
369 370 2.560981 TCACCTCATCTGAACTTACGCA 59.439 45.455 0.00 0.00 0.00 5.24
370 371 3.195610 TCACCTCATCTGAACTTACGCAT 59.804 43.478 0.00 0.00 0.00 4.73
371 372 3.308053 CACCTCATCTGAACTTACGCATG 59.692 47.826 0.00 0.00 0.00 4.06
372 373 3.195610 ACCTCATCTGAACTTACGCATGA 59.804 43.478 0.00 0.00 0.00 3.07
373 374 3.801050 CCTCATCTGAACTTACGCATGAG 59.199 47.826 0.00 0.00 37.88 2.90
374 375 4.440663 CCTCATCTGAACTTACGCATGAGA 60.441 45.833 2.50 0.00 39.68 3.27
375 376 5.072040 TCATCTGAACTTACGCATGAGAA 57.928 39.130 2.50 0.00 0.00 2.87
376 377 5.664457 TCATCTGAACTTACGCATGAGAAT 58.336 37.500 2.50 0.00 0.00 2.40
377 378 5.750547 TCATCTGAACTTACGCATGAGAATC 59.249 40.000 2.50 0.00 0.00 2.52
378 379 4.105486 TCTGAACTTACGCATGAGAATCG 58.895 43.478 2.50 0.00 38.61 3.34
379 380 3.186909 TGAACTTACGCATGAGAATCGG 58.813 45.455 2.50 0.00 38.61 4.18
380 381 2.225068 ACTTACGCATGAGAATCGGG 57.775 50.000 2.50 0.00 38.61 5.14
381 382 1.754803 ACTTACGCATGAGAATCGGGA 59.245 47.619 2.50 0.00 38.61 5.14
382 383 2.365617 ACTTACGCATGAGAATCGGGAT 59.634 45.455 2.50 0.00 38.61 3.85
383 384 3.181465 ACTTACGCATGAGAATCGGGATT 60.181 43.478 2.50 0.00 38.61 3.01
384 385 1.586422 ACGCATGAGAATCGGGATTG 58.414 50.000 2.50 0.00 38.61 2.67
385 386 1.134401 ACGCATGAGAATCGGGATTGT 60.134 47.619 2.50 0.00 38.61 2.71
386 387 2.102420 ACGCATGAGAATCGGGATTGTA 59.898 45.455 2.50 0.00 38.61 2.41
387 388 3.130633 CGCATGAGAATCGGGATTGTAA 58.869 45.455 0.00 0.00 38.61 2.41
388 389 3.748048 CGCATGAGAATCGGGATTGTAAT 59.252 43.478 0.00 0.00 38.61 1.89
389 390 4.143030 CGCATGAGAATCGGGATTGTAATC 60.143 45.833 0.00 0.00 38.61 1.75
390 391 4.999950 GCATGAGAATCGGGATTGTAATCT 59.000 41.667 0.00 0.00 38.61 2.40
391 392 5.106791 GCATGAGAATCGGGATTGTAATCTG 60.107 44.000 0.00 0.00 38.61 2.90
392 393 4.960938 TGAGAATCGGGATTGTAATCTGG 58.039 43.478 0.00 0.00 38.61 3.86
393 394 4.653801 TGAGAATCGGGATTGTAATCTGGA 59.346 41.667 0.00 3.43 38.61 3.86
394 395 5.130311 TGAGAATCGGGATTGTAATCTGGAA 59.870 40.000 0.00 0.00 38.61 3.53
395 396 6.001449 AGAATCGGGATTGTAATCTGGAAA 57.999 37.500 0.00 0.00 35.73 3.13
396 397 5.823045 AGAATCGGGATTGTAATCTGGAAAC 59.177 40.000 0.00 2.73 35.73 2.78
397 398 4.837093 TCGGGATTGTAATCTGGAAACT 57.163 40.909 4.75 0.00 35.73 2.66
398 399 4.766375 TCGGGATTGTAATCTGGAAACTC 58.234 43.478 4.75 0.00 35.73 3.01
399 400 4.224147 TCGGGATTGTAATCTGGAAACTCA 59.776 41.667 4.75 0.00 35.73 3.41
400 401 5.104527 TCGGGATTGTAATCTGGAAACTCAT 60.105 40.000 4.75 0.00 35.73 2.90
401 402 5.008019 CGGGATTGTAATCTGGAAACTCATG 59.992 44.000 4.75 0.00 35.73 3.07
402 403 5.221126 GGGATTGTAATCTGGAAACTCATGC 60.221 44.000 4.75 0.00 35.73 4.06
403 404 4.944962 TTGTAATCTGGAAACTCATGCG 57.055 40.909 0.00 0.00 0.00 4.73
404 405 2.677836 TGTAATCTGGAAACTCATGCGC 59.322 45.455 0.00 0.00 0.00 6.09
405 406 2.119801 AATCTGGAAACTCATGCGCT 57.880 45.000 9.73 0.00 0.00 5.92
406 407 2.119801 ATCTGGAAACTCATGCGCTT 57.880 45.000 9.73 0.00 0.00 4.68
407 408 1.159285 TCTGGAAACTCATGCGCTTG 58.841 50.000 16.66 16.66 0.00 4.01
408 409 0.455633 CTGGAAACTCATGCGCTTGC 60.456 55.000 17.84 3.92 39.78 4.01
409 410 0.890542 TGGAAACTCATGCGCTTGCT 60.891 50.000 17.84 3.20 40.12 3.91
410 411 1.086696 GGAAACTCATGCGCTTGCTA 58.913 50.000 17.84 1.62 40.12 3.49
411 412 1.468520 GGAAACTCATGCGCTTGCTAA 59.531 47.619 17.84 0.90 40.12 3.09
412 413 2.095263 GGAAACTCATGCGCTTGCTAAA 60.095 45.455 17.84 0.55 40.12 1.85
413 414 2.907910 AACTCATGCGCTTGCTAAAG 57.092 45.000 17.84 12.29 40.12 1.85
425 426 3.837213 TTGCTAAAGCTGCAATGTCTC 57.163 42.857 5.88 0.00 44.24 3.36
426 427 3.063510 TGCTAAAGCTGCAATGTCTCT 57.936 42.857 1.02 0.00 42.66 3.10
427 428 4.206477 TGCTAAAGCTGCAATGTCTCTA 57.794 40.909 1.02 0.00 42.66 2.43
428 429 4.186926 TGCTAAAGCTGCAATGTCTCTAG 58.813 43.478 1.02 0.00 42.66 2.43
429 430 3.002144 GCTAAAGCTGCAATGTCTCTAGC 59.998 47.826 1.02 0.00 38.21 3.42
430 431 3.347077 AAAGCTGCAATGTCTCTAGCT 57.653 42.857 1.02 0.00 45.87 3.32
431 432 2.600470 AGCTGCAATGTCTCTAGCTC 57.400 50.000 1.02 0.00 40.44 4.09
432 433 1.202394 AGCTGCAATGTCTCTAGCTCG 60.202 52.381 1.02 0.00 40.44 5.03
433 434 1.470632 GCTGCAATGTCTCTAGCTCGT 60.471 52.381 0.00 0.00 0.00 4.18
434 435 2.191802 CTGCAATGTCTCTAGCTCGTG 58.808 52.381 0.00 0.00 0.00 4.35
435 436 1.134995 TGCAATGTCTCTAGCTCGTGG 60.135 52.381 0.00 0.00 0.00 4.94
436 437 1.565305 CAATGTCTCTAGCTCGTGGC 58.435 55.000 0.00 0.00 42.19 5.01
437 438 0.461961 AATGTCTCTAGCTCGTGGCC 59.538 55.000 0.00 0.00 43.05 5.36
438 439 1.729470 ATGTCTCTAGCTCGTGGCCG 61.729 60.000 0.00 0.00 43.05 6.13
439 440 3.518998 TCTCTAGCTCGTGGCCGC 61.519 66.667 6.11 6.11 43.05 6.53
440 441 4.577246 CTCTAGCTCGTGGCCGCC 62.577 72.222 11.56 1.04 43.05 6.13
442 443 4.227134 CTAGCTCGTGGCCGCCAT 62.227 66.667 16.96 0.85 43.05 4.40
443 444 4.221422 TAGCTCGTGGCCGCCATC 62.221 66.667 16.96 8.57 43.05 3.51
446 447 2.436646 CTCGTGGCCGCCATCTTT 60.437 61.111 16.96 0.00 35.28 2.52
447 448 2.745884 TCGTGGCCGCCATCTTTG 60.746 61.111 16.96 3.91 35.28 2.77
448 449 3.814268 CGTGGCCGCCATCTTTGG 61.814 66.667 16.96 0.00 46.66 3.28
461 462 4.798574 CCATCTTTGGCTAACAGAAACAC 58.201 43.478 0.00 0.00 35.85 3.32
462 463 4.321230 CCATCTTTGGCTAACAGAAACACC 60.321 45.833 0.00 0.00 35.85 4.16
463 464 4.164843 TCTTTGGCTAACAGAAACACCT 57.835 40.909 0.00 0.00 0.00 4.00
464 465 3.882888 TCTTTGGCTAACAGAAACACCTG 59.117 43.478 0.00 0.00 39.93 4.00
465 466 3.569194 TTGGCTAACAGAAACACCTGA 57.431 42.857 0.00 0.00 37.59 3.86
466 467 3.788227 TGGCTAACAGAAACACCTGAT 57.212 42.857 0.00 0.00 37.59 2.90
467 468 4.901197 TGGCTAACAGAAACACCTGATA 57.099 40.909 0.00 0.00 37.59 2.15
468 469 5.435686 TGGCTAACAGAAACACCTGATAT 57.564 39.130 0.00 0.00 37.59 1.63
469 470 5.815581 TGGCTAACAGAAACACCTGATATT 58.184 37.500 0.00 0.00 37.59 1.28
470 471 6.245408 TGGCTAACAGAAACACCTGATATTT 58.755 36.000 0.00 0.00 37.59 1.40
471 472 6.719370 TGGCTAACAGAAACACCTGATATTTT 59.281 34.615 0.00 0.00 37.59 1.82
472 473 7.232534 TGGCTAACAGAAACACCTGATATTTTT 59.767 33.333 0.00 0.00 37.59 1.94
494 495 6.633500 TTTGTATTCCTTTCACTGTTGAGG 57.367 37.500 0.00 0.00 31.71 3.86
495 496 5.304686 TGTATTCCTTTCACTGTTGAGGT 57.695 39.130 0.00 0.00 31.71 3.85
496 497 5.063204 TGTATTCCTTTCACTGTTGAGGTG 58.937 41.667 0.00 0.00 31.71 4.00
497 498 3.644966 TTCCTTTCACTGTTGAGGTGT 57.355 42.857 0.00 0.00 36.25 4.16
498 499 4.764050 TTCCTTTCACTGTTGAGGTGTA 57.236 40.909 0.00 0.00 36.25 2.90
499 500 4.764050 TCCTTTCACTGTTGAGGTGTAA 57.236 40.909 0.00 0.00 36.25 2.41
500 501 5.304686 TCCTTTCACTGTTGAGGTGTAAT 57.695 39.130 0.00 0.00 36.25 1.89
501 502 6.428083 TCCTTTCACTGTTGAGGTGTAATA 57.572 37.500 0.00 0.00 36.25 0.98
502 503 7.016153 TCCTTTCACTGTTGAGGTGTAATAT 57.984 36.000 0.00 0.00 36.25 1.28
503 504 8.141298 TCCTTTCACTGTTGAGGTGTAATATA 57.859 34.615 0.00 0.00 36.25 0.86
504 505 8.038944 TCCTTTCACTGTTGAGGTGTAATATAC 58.961 37.037 0.00 0.00 36.25 1.47
505 506 8.041323 CCTTTCACTGTTGAGGTGTAATATACT 58.959 37.037 0.00 0.00 36.25 2.12
506 507 8.997621 TTTCACTGTTGAGGTGTAATATACTC 57.002 34.615 0.00 0.00 36.25 2.59
507 508 7.108841 TCACTGTTGAGGTGTAATATACTCC 57.891 40.000 1.34 1.34 41.45 3.85
515 516 5.131594 GGTGTAATATACTCCTTCCGTCC 57.868 47.826 2.24 0.00 38.84 4.79
516 517 4.021632 GGTGTAATATACTCCTTCCGTCCC 60.022 50.000 2.24 0.00 38.84 4.46
517 518 4.586001 GTGTAATATACTCCTTCCGTCCCA 59.414 45.833 0.00 0.00 0.00 4.37
518 519 5.245526 GTGTAATATACTCCTTCCGTCCCAT 59.754 44.000 0.00 0.00 0.00 4.00
519 520 6.435277 GTGTAATATACTCCTTCCGTCCCATA 59.565 42.308 0.00 0.00 0.00 2.74
520 521 7.011994 TGTAATATACTCCTTCCGTCCCATAA 58.988 38.462 0.00 0.00 0.00 1.90
521 522 7.676893 TGTAATATACTCCTTCCGTCCCATAAT 59.323 37.037 0.00 0.00 0.00 1.28
522 523 9.193806 GTAATATACTCCTTCCGTCCCATAATA 57.806 37.037 0.00 0.00 0.00 0.98
523 524 8.855804 AATATACTCCTTCCGTCCCATAATAT 57.144 34.615 0.00 0.00 0.00 1.28
524 525 9.947189 AATATACTCCTTCCGTCCCATAATATA 57.053 33.333 0.00 0.00 0.00 0.86
525 526 9.947189 ATATACTCCTTCCGTCCCATAATATAA 57.053 33.333 0.00 0.00 0.00 0.98
526 527 6.607004 ACTCCTTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
527 528 6.320518 ACTCCTTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
528 529 6.437793 ACTCCTTCCGTCCCATAATATAAGAG 59.562 42.308 0.00 0.00 0.00 2.85
529 530 5.187186 TCCTTCCGTCCCATAATATAAGAGC 59.813 44.000 0.00 0.00 0.00 4.09
530 531 4.713824 TCCGTCCCATAATATAAGAGCG 57.286 45.455 0.00 0.00 0.00 5.03
531 532 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
532 533 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
533 534 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
534 535 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
535 536 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
536 537 7.385752 CCGTCCCATAATATAAGAGCGTTTTTA 59.614 37.037 0.00 0.00 0.00 1.52
537 538 8.767085 CGTCCCATAATATAAGAGCGTTTTTAA 58.233 33.333 0.00 0.00 0.00 1.52
538 539 9.874215 GTCCCATAATATAAGAGCGTTTTTAAC 57.126 33.333 0.00 0.00 0.00 2.01
539 540 9.616156 TCCCATAATATAAGAGCGTTTTTAACA 57.384 29.630 0.00 0.00 0.00 2.41
540 541 9.659830 CCCATAATATAAGAGCGTTTTTAACAC 57.340 33.333 0.00 0.00 0.00 3.32
549 550 8.828688 AAGAGCGTTTTTAACACTATTCTAGT 57.171 30.769 0.00 0.00 40.28 2.57
562 563 5.513495 CACTATTCTAGTGTCAAGAACGCTC 59.487 44.000 6.21 0.00 45.69 5.03
563 564 4.792521 ATTCTAGTGTCAAGAACGCTCT 57.207 40.909 0.00 0.00 45.69 4.09
564 565 4.585955 TTCTAGTGTCAAGAACGCTCTT 57.414 40.909 0.00 0.00 45.69 2.85
565 566 5.700722 TTCTAGTGTCAAGAACGCTCTTA 57.299 39.130 0.00 0.00 45.69 2.10
566 567 5.899120 TCTAGTGTCAAGAACGCTCTTAT 57.101 39.130 0.00 0.00 45.69 1.73
567 568 6.997239 TCTAGTGTCAAGAACGCTCTTATA 57.003 37.500 0.00 0.00 45.69 0.98
568 569 7.569639 TCTAGTGTCAAGAACGCTCTTATAT 57.430 36.000 0.00 0.00 45.69 0.86
569 570 7.997482 TCTAGTGTCAAGAACGCTCTTATATT 58.003 34.615 0.00 0.00 45.69 1.28
570 571 9.117183 TCTAGTGTCAAGAACGCTCTTATATTA 57.883 33.333 0.00 0.00 45.69 0.98
571 572 7.988904 AGTGTCAAGAACGCTCTTATATTAC 57.011 36.000 0.00 0.00 45.69 1.89
572 573 6.691818 AGTGTCAAGAACGCTCTTATATTACG 59.308 38.462 0.00 0.00 45.69 3.18
573 574 5.975344 TGTCAAGAACGCTCTTATATTACGG 59.025 40.000 0.00 0.00 40.05 4.02
574 575 5.401674 GTCAAGAACGCTCTTATATTACGGG 59.598 44.000 0.00 0.00 40.05 5.28
575 576 5.300034 TCAAGAACGCTCTTATATTACGGGA 59.700 40.000 0.00 0.00 40.05 5.14
576 577 5.118642 AGAACGCTCTTATATTACGGGAC 57.881 43.478 0.00 0.00 0.00 4.46
577 578 4.826183 AGAACGCTCTTATATTACGGGACT 59.174 41.667 0.00 0.00 0.00 3.85
578 579 4.500603 ACGCTCTTATATTACGGGACTG 57.499 45.455 0.00 0.00 0.00 3.51
579 580 4.139786 ACGCTCTTATATTACGGGACTGA 58.860 43.478 0.00 0.00 0.00 3.41
580 581 4.215827 ACGCTCTTATATTACGGGACTGAG 59.784 45.833 0.00 0.00 0.00 3.35
581 582 4.379603 CGCTCTTATATTACGGGACTGAGG 60.380 50.000 0.00 0.00 0.00 3.86
582 583 4.082136 GCTCTTATATTACGGGACTGAGGG 60.082 50.000 0.00 0.00 0.00 4.30
583 584 5.322754 CTCTTATATTACGGGACTGAGGGA 58.677 45.833 0.00 0.00 0.00 4.20
584 585 5.322754 TCTTATATTACGGGACTGAGGGAG 58.677 45.833 0.00 0.00 0.00 4.30
585 586 3.614568 ATATTACGGGACTGAGGGAGT 57.385 47.619 0.00 0.00 37.76 3.85
586 587 4.736611 ATATTACGGGACTGAGGGAGTA 57.263 45.455 0.00 0.00 33.83 2.59
587 588 2.431954 TTACGGGACTGAGGGAGTAG 57.568 55.000 0.00 0.00 33.83 2.57
588 589 0.106819 TACGGGACTGAGGGAGTAGC 60.107 60.000 0.00 0.00 33.83 3.58
589 590 1.379977 CGGGACTGAGGGAGTAGCA 60.380 63.158 0.00 0.00 33.83 3.49
590 591 1.388065 CGGGACTGAGGGAGTAGCAG 61.388 65.000 0.00 0.00 33.83 4.24
591 592 1.681486 GGGACTGAGGGAGTAGCAGC 61.681 65.000 0.00 0.00 33.83 5.25
592 593 0.686112 GGACTGAGGGAGTAGCAGCT 60.686 60.000 0.00 0.00 33.83 4.24
593 594 1.190643 GACTGAGGGAGTAGCAGCTT 58.809 55.000 0.00 0.00 33.83 3.74
594 595 1.552792 GACTGAGGGAGTAGCAGCTTT 59.447 52.381 0.00 0.00 33.83 3.51
595 596 1.981495 ACTGAGGGAGTAGCAGCTTTT 59.019 47.619 0.00 0.00 30.86 2.27
596 597 3.173965 ACTGAGGGAGTAGCAGCTTTTA 58.826 45.455 0.00 0.00 30.86 1.52
597 598 3.196685 ACTGAGGGAGTAGCAGCTTTTAG 59.803 47.826 0.00 0.00 30.86 1.85
598 599 2.093447 TGAGGGAGTAGCAGCTTTTAGC 60.093 50.000 0.00 0.00 42.84 3.09
599 600 1.210722 AGGGAGTAGCAGCTTTTAGCC 59.789 52.381 0.00 0.00 43.77 3.93
600 601 1.210722 GGGAGTAGCAGCTTTTAGCCT 59.789 52.381 0.00 0.00 43.77 4.58
601 602 2.434702 GGGAGTAGCAGCTTTTAGCCTA 59.565 50.000 0.00 0.00 43.77 3.93
602 603 3.118371 GGGAGTAGCAGCTTTTAGCCTAA 60.118 47.826 0.00 0.00 43.77 2.69
603 604 4.514401 GGAGTAGCAGCTTTTAGCCTAAA 58.486 43.478 0.00 0.00 43.77 1.85
604 605 4.941873 GGAGTAGCAGCTTTTAGCCTAAAA 59.058 41.667 9.19 9.19 43.77 1.52
605 606 5.414765 GGAGTAGCAGCTTTTAGCCTAAAAA 59.585 40.000 10.63 0.00 43.77 1.94
627 628 6.986424 AAAAGCTACATTTTGACGTAAAGC 57.014 33.333 0.00 0.00 31.30 3.51
628 629 5.623673 AAAAGCTACATTTTGACGTAAAGCG 59.376 36.000 0.00 0.00 37.52 4.68
629 630 2.838452 GCTACATTTTGACGTAAAGCGC 59.162 45.455 0.00 0.00 46.11 5.92
630 631 1.945207 ACATTTTGACGTAAAGCGCG 58.055 45.000 0.00 0.00 46.11 6.86
631 632 1.262151 ACATTTTGACGTAAAGCGCGT 59.738 42.857 8.43 0.00 46.11 6.01
639 640 1.657094 ACGTAAAGCGCGTCAAATAGG 59.343 47.619 8.43 3.13 46.11 2.57
640 641 1.005347 CGTAAAGCGCGTCAAATAGGG 60.005 52.381 8.43 0.00 0.00 3.53
641 642 2.273557 GTAAAGCGCGTCAAATAGGGA 58.726 47.619 8.43 0.00 0.00 4.20
642 643 2.038387 AAAGCGCGTCAAATAGGGAT 57.962 45.000 8.43 0.00 0.00 3.85
643 644 2.038387 AAGCGCGTCAAATAGGGATT 57.962 45.000 8.43 0.00 0.00 3.01
644 645 2.038387 AGCGCGTCAAATAGGGATTT 57.962 45.000 8.43 0.00 35.56 2.17
645 646 1.940613 AGCGCGTCAAATAGGGATTTC 59.059 47.619 8.43 0.00 32.73 2.17
646 647 1.668751 GCGCGTCAAATAGGGATTTCA 59.331 47.619 8.43 0.00 32.73 2.69
647 648 2.096819 GCGCGTCAAATAGGGATTTCAA 59.903 45.455 8.43 0.00 32.73 2.69
648 649 3.680789 CGCGTCAAATAGGGATTTCAAC 58.319 45.455 0.00 0.00 32.73 3.18
649 650 3.374058 CGCGTCAAATAGGGATTTCAACT 59.626 43.478 0.00 0.00 32.73 3.16
650 651 4.494199 CGCGTCAAATAGGGATTTCAACTC 60.494 45.833 0.00 0.00 32.73 3.01
651 652 4.394920 GCGTCAAATAGGGATTTCAACTCA 59.605 41.667 0.00 0.00 32.73 3.41
652 653 5.106317 GCGTCAAATAGGGATTTCAACTCAA 60.106 40.000 0.00 0.00 32.73 3.02
653 654 6.569610 GCGTCAAATAGGGATTTCAACTCAAA 60.570 38.462 0.00 0.00 32.73 2.69
654 655 6.801862 CGTCAAATAGGGATTTCAACTCAAAC 59.198 38.462 0.00 0.00 32.73 2.93
655 656 7.090808 GTCAAATAGGGATTTCAACTCAAACC 58.909 38.462 0.00 0.00 32.73 3.27
656 657 7.010160 TCAAATAGGGATTTCAACTCAAACCT 58.990 34.615 0.00 0.00 32.73 3.50
657 658 7.176690 TCAAATAGGGATTTCAACTCAAACCTC 59.823 37.037 0.00 0.00 32.73 3.85
664 665 1.067142 TCAACTCAAACCTCGATCCGG 60.067 52.381 0.00 0.00 0.00 5.14
673 674 0.896019 CCTCGATCCGGTATCCAGCT 60.896 60.000 0.00 0.00 0.00 4.24
789 792 1.421410 CCAACTCCTACATCGTGCGC 61.421 60.000 0.00 0.00 0.00 6.09
970 979 2.762234 CCCCTTCGTCTCCGTCGAG 61.762 68.421 0.00 0.00 38.52 4.04
971 980 2.762234 CCCTTCGTCTCCGTCGAGG 61.762 68.421 0.00 0.00 38.52 4.63
1202 1219 1.899814 GTTCAGGGATTTTGGGGGTTC 59.100 52.381 0.00 0.00 0.00 3.62
1204 1221 1.077005 TCAGGGATTTTGGGGGTTCTG 59.923 52.381 0.00 0.00 0.00 3.02
1357 1375 3.921119 TGCTGCTGTCGAATTGAATTT 57.079 38.095 0.00 0.00 0.00 1.82
1400 1421 6.837471 ACTTCCTGTCTAGTATTTCGTTCT 57.163 37.500 0.00 0.00 0.00 3.01
1471 1492 3.241067 TCGATGGGTAGTTACAAGTGC 57.759 47.619 0.00 0.00 0.00 4.40
1608 1640 8.246180 AGTTGGTTGCTCATTATTGTTCTTATG 58.754 33.333 0.00 0.00 0.00 1.90
1616 1648 8.668353 GCTCATTATTGTTCTTATGACAAGTGA 58.332 33.333 0.00 0.00 0.00 3.41
1911 3135 6.069088 TGGATACATTGGACATAGGGAAAGTT 60.069 38.462 0.00 0.00 46.17 2.66
2307 3535 5.379187 TGGTGTGTAGTTCTGTACTAGTCA 58.621 41.667 0.00 0.00 39.98 3.41
2462 3692 3.885297 ACTAAATGCTGCTGTGTTGAAGT 59.115 39.130 0.00 0.00 0.00 3.01
2833 4589 9.745880 TCTAGCTATCTTGTTTTATTTACCTCG 57.254 33.333 0.00 0.00 0.00 4.63
2861 4617 2.105649 TGGCATGCCATATTTACCTCGA 59.894 45.455 35.59 7.99 41.89 4.04
2867 4623 6.381801 CATGCCATATTTACCTCGATTTTCC 58.618 40.000 0.00 0.00 0.00 3.13
2878 4634 3.435327 CCTCGATTTTCCGACATGTCAAA 59.565 43.478 24.93 17.45 34.56 2.69
2964 4808 9.454859 AATAGCCATGCTTATAATTTCTACTCC 57.545 33.333 0.00 0.00 40.44 3.85
2965 4809 6.241645 AGCCATGCTTATAATTTCTACTCCC 58.758 40.000 0.00 0.00 33.89 4.30
2968 4812 7.684529 CCATGCTTATAATTTCTACTCCCTCT 58.315 38.462 0.00 0.00 0.00 3.69
2969 4813 8.816894 CCATGCTTATAATTTCTACTCCCTCTA 58.183 37.037 0.00 0.00 0.00 2.43
2988 4832 9.561069 TCCCTCTAAAGAAATATAAGATTGTGC 57.439 33.333 0.00 0.00 0.00 4.57
3010 4854 9.593134 TGTGCATATTAACCCAAAATAAATCAC 57.407 29.630 0.00 0.00 0.00 3.06
3011 4855 9.593134 GTGCATATTAACCCAAAATAAATCACA 57.407 29.630 0.00 0.00 0.00 3.58
3077 4921 5.675538 AGCCTCCAGTGTCATATAAAACTC 58.324 41.667 0.00 0.00 0.00 3.01
3267 5111 6.767902 TGTTATCTCCATCCTGTTATTCAAGC 59.232 38.462 0.00 0.00 0.00 4.01
3348 5192 5.175856 CGTCTTCAGTGTAAGAGTTTCCTTG 59.824 44.000 5.57 0.00 36.19 3.61
3657 5501 9.803315 AGTAATGTTCTGTATATGCATATACCG 57.197 33.333 36.75 32.75 42.70 4.02
3701 5545 3.326588 TGGTAAAAGGCAGAGCACTCTTA 59.673 43.478 0.00 0.00 37.98 2.10
3723 5567 5.825593 ATTGACCGGTATCTAATCCATGT 57.174 39.130 7.34 0.00 0.00 3.21
3725 5569 3.254903 TGACCGGTATCTAATCCATGTCG 59.745 47.826 7.34 0.00 31.84 4.35
3855 5699 2.332063 AGTCGCCCATTGAAGGTATG 57.668 50.000 0.00 0.00 0.00 2.39
3856 5700 0.663153 GTCGCCCATTGAAGGTATGC 59.337 55.000 0.00 0.00 0.00 3.14
3857 5701 0.465460 TCGCCCATTGAAGGTATGCC 60.465 55.000 0.00 0.00 0.00 4.40
3858 5702 0.751277 CGCCCATTGAAGGTATGCCA 60.751 55.000 1.54 0.00 37.19 4.92
3859 5703 1.484038 GCCCATTGAAGGTATGCCAA 58.516 50.000 1.54 0.00 37.19 4.52
3860 5704 1.136891 GCCCATTGAAGGTATGCCAAC 59.863 52.381 1.54 0.00 37.19 3.77
3861 5705 2.455557 CCCATTGAAGGTATGCCAACA 58.544 47.619 1.54 0.00 37.19 3.33
3975 5827 9.355215 CACTCGAGTAACCATACATTTATATCC 57.645 37.037 19.57 0.00 34.29 2.59
3978 5830 8.456471 TCGAGTAACCATACATTTATATCCTCG 58.544 37.037 0.00 0.00 34.29 4.63
3999 5851 6.039493 CCTCGGAACTGTATAACTACATCAGT 59.961 42.308 0.00 0.00 40.40 3.41
4081 6016 4.209538 AGACTGAGAGAGATGGTCAGATG 58.790 47.826 5.61 0.00 40.21 2.90
4131 6066 2.030451 GCTGAAACTTCCAAGAAGGCAG 60.030 50.000 9.05 12.32 36.62 4.85
4326 6271 5.452078 TCTTCGCCAACAAATCTGAATTT 57.548 34.783 0.00 0.00 35.43 1.82
4378 6331 2.287728 TGCACTGACATGACATTTGTGC 60.288 45.455 23.90 23.90 46.26 4.57
4381 6334 4.320421 GCACTGACATGACATTTGTGCTTA 60.320 41.667 23.60 0.00 43.79 3.09
4422 6375 0.179081 GCCCGGTCTTCAGTCATACC 60.179 60.000 0.00 0.00 0.00 2.73
4431 6384 5.010213 GGTCTTCAGTCATACCCTCATACTC 59.990 48.000 0.00 0.00 0.00 2.59
4436 6389 2.296471 GTCATACCCTCATACTCGGTGG 59.704 54.545 0.00 0.00 0.00 4.61
4489 6443 2.755469 CCAATGCCGACCCCCAAG 60.755 66.667 0.00 0.00 0.00 3.61
4491 6445 2.046285 CAATGCCGACCCCCAAGAC 61.046 63.158 0.00 0.00 0.00 3.01
4529 6483 1.139058 GTGGACATGGATACGGAAGCT 59.861 52.381 0.00 0.00 42.51 3.74
4596 6550 3.994392 TCTTAAGTCCGCATCAGTGAAAC 59.006 43.478 0.00 0.00 0.00 2.78
4737 6692 7.490962 TCTTTCTTAAATCTTTGACGCTCAA 57.509 32.000 0.00 0.00 34.03 3.02
4793 6752 6.166984 TGGAGTGAAAAATAAATGCCACAA 57.833 33.333 0.00 0.00 0.00 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.555168 CCACTTCTGTACACTTCTGGACC 60.555 52.174 0.00 0.00 28.55 4.46
34 35 1.361204 TCACCCATCATGTGACAGGT 58.639 50.000 0.00 0.00 37.80 4.00
44 45 6.399743 CATCAACATGAATTTTCACCCATCA 58.600 36.000 0.00 0.00 40.49 3.07
125 126 3.123273 AGGCACCCAGAAACATACCTAT 58.877 45.455 0.00 0.00 0.00 2.57
126 127 2.504175 GAGGCACCCAGAAACATACCTA 59.496 50.000 0.00 0.00 0.00 3.08
149 150 1.277842 TGTCATATCAACAGCCACCGT 59.722 47.619 0.00 0.00 0.00 4.83
169 170 3.575687 CTGCTTCAAGGATTTCTGGGTTT 59.424 43.478 0.00 0.00 0.00 3.27
170 171 3.160269 CTGCTTCAAGGATTTCTGGGTT 58.840 45.455 0.00 0.00 0.00 4.11
171 172 2.376518 TCTGCTTCAAGGATTTCTGGGT 59.623 45.455 0.00 0.00 0.00 4.51
172 173 3.077484 TCTGCTTCAAGGATTTCTGGG 57.923 47.619 0.00 0.00 0.00 4.45
173 174 3.119566 GCTTCTGCTTCAAGGATTTCTGG 60.120 47.826 0.00 0.00 36.03 3.86
174 175 3.425892 CGCTTCTGCTTCAAGGATTTCTG 60.426 47.826 0.00 0.00 36.97 3.02
176 177 2.485814 ACGCTTCTGCTTCAAGGATTTC 59.514 45.455 0.00 0.00 36.97 2.17
177 178 2.227388 CACGCTTCTGCTTCAAGGATTT 59.773 45.455 0.00 0.00 36.97 2.17
179 180 1.271054 ACACGCTTCTGCTTCAAGGAT 60.271 47.619 0.00 0.00 36.97 3.24
180 181 0.106708 ACACGCTTCTGCTTCAAGGA 59.893 50.000 0.00 0.00 36.97 3.36
181 182 1.728971 CTACACGCTTCTGCTTCAAGG 59.271 52.381 0.00 0.00 36.97 3.61
182 183 1.127582 GCTACACGCTTCTGCTTCAAG 59.872 52.381 0.00 0.00 36.97 3.02
183 184 1.148310 GCTACACGCTTCTGCTTCAA 58.852 50.000 0.00 0.00 36.97 2.69
184 185 1.008875 CGCTACACGCTTCTGCTTCA 61.009 55.000 0.00 0.00 36.97 3.02
185 186 0.732880 TCGCTACACGCTTCTGCTTC 60.733 55.000 0.00 0.00 43.23 3.86
186 187 0.734253 CTCGCTACACGCTTCTGCTT 60.734 55.000 0.00 0.00 43.23 3.91
187 188 1.153939 CTCGCTACACGCTTCTGCT 60.154 57.895 0.00 0.00 43.23 4.24
189 190 1.517257 CCCTCGCTACACGCTTCTG 60.517 63.158 0.00 0.00 43.23 3.02
190 191 2.711922 CCCCTCGCTACACGCTTCT 61.712 63.158 0.00 0.00 43.23 2.85
192 193 4.452733 GCCCCTCGCTACACGCTT 62.453 66.667 0.00 0.00 43.23 4.68
201 202 4.200283 CGAGAGACAGCCCCTCGC 62.200 72.222 0.00 0.00 42.34 5.03
203 204 3.071206 TGCGAGAGACAGCCCCTC 61.071 66.667 0.00 0.00 0.00 4.30
204 205 2.500815 TAGTGCGAGAGACAGCCCCT 62.501 60.000 0.00 0.00 0.00 4.79
205 206 2.010582 CTAGTGCGAGAGACAGCCCC 62.011 65.000 0.00 0.00 0.00 5.80
206 207 1.032657 TCTAGTGCGAGAGACAGCCC 61.033 60.000 0.00 0.00 0.00 5.19
207 208 0.099791 GTCTAGTGCGAGAGACAGCC 59.900 60.000 6.78 0.00 41.49 4.85
208 209 0.099791 GGTCTAGTGCGAGAGACAGC 59.900 60.000 12.19 0.00 43.28 4.40
209 210 1.400142 CAGGTCTAGTGCGAGAGACAG 59.600 57.143 12.19 2.84 43.28 3.51
210 211 1.003233 TCAGGTCTAGTGCGAGAGACA 59.997 52.381 12.19 0.00 43.28 3.41
211 212 1.740297 TCAGGTCTAGTGCGAGAGAC 58.260 55.000 3.71 3.71 41.19 3.36
212 213 2.491675 TTCAGGTCTAGTGCGAGAGA 57.508 50.000 0.00 0.00 0.00 3.10
213 214 2.425312 ACATTCAGGTCTAGTGCGAGAG 59.575 50.000 0.00 0.00 0.00 3.20
214 215 2.447443 ACATTCAGGTCTAGTGCGAGA 58.553 47.619 0.00 0.00 0.00 4.04
215 216 2.949451 ACATTCAGGTCTAGTGCGAG 57.051 50.000 0.00 0.00 0.00 5.03
216 217 2.560981 TGAACATTCAGGTCTAGTGCGA 59.439 45.455 0.00 0.00 34.06 5.10
217 218 2.959516 TGAACATTCAGGTCTAGTGCG 58.040 47.619 0.00 0.00 34.06 5.34
228 229 6.936335 TGCTATCTGAACTTTCTGAACATTCA 59.064 34.615 12.47 12.47 38.39 2.57
229 230 7.369803 TGCTATCTGAACTTTCTGAACATTC 57.630 36.000 3.05 6.06 38.39 2.67
230 231 7.229306 TGTTGCTATCTGAACTTTCTGAACATT 59.771 33.333 3.05 0.00 38.39 2.71
231 232 6.712095 TGTTGCTATCTGAACTTTCTGAACAT 59.288 34.615 3.05 0.00 38.39 2.71
232 233 6.054941 TGTTGCTATCTGAACTTTCTGAACA 58.945 36.000 3.05 0.93 38.39 3.18
233 234 6.425114 TCTGTTGCTATCTGAACTTTCTGAAC 59.575 38.462 3.05 0.00 38.39 3.18
234 235 6.524734 TCTGTTGCTATCTGAACTTTCTGAA 58.475 36.000 3.05 0.00 38.39 3.02
235 236 6.101650 TCTGTTGCTATCTGAACTTTCTGA 57.898 37.500 1.54 1.54 39.07 3.27
236 237 6.981762 ATCTGTTGCTATCTGAACTTTCTG 57.018 37.500 0.00 0.00 0.00 3.02
237 238 7.375106 CAATCTGTTGCTATCTGAACTTTCT 57.625 36.000 0.00 0.00 0.00 2.52
252 253 0.675083 TGTGGCCAAGCAATCTGTTG 59.325 50.000 7.24 0.00 38.39 3.33
253 254 1.412079 TTGTGGCCAAGCAATCTGTT 58.588 45.000 7.24 0.00 0.00 3.16
254 255 1.636148 ATTGTGGCCAAGCAATCTGT 58.364 45.000 7.24 0.00 33.17 3.41
255 256 2.754946 AATTGTGGCCAAGCAATCTG 57.245 45.000 18.92 0.00 34.61 2.90
256 257 4.040217 TGTTTAATTGTGGCCAAGCAATCT 59.960 37.500 18.92 12.71 34.61 2.40
257 258 4.314121 TGTTTAATTGTGGCCAAGCAATC 58.686 39.130 18.92 9.38 34.61 2.67
258 259 4.348863 TGTTTAATTGTGGCCAAGCAAT 57.651 36.364 7.24 11.83 36.95 3.56
259 260 3.827008 TGTTTAATTGTGGCCAAGCAA 57.173 38.095 7.24 9.55 33.17 3.91
260 261 3.661944 CATGTTTAATTGTGGCCAAGCA 58.338 40.909 7.24 0.00 33.17 3.91
261 262 2.416202 GCATGTTTAATTGTGGCCAAGC 59.584 45.455 7.24 0.00 33.17 4.01
262 263 3.002102 GGCATGTTTAATTGTGGCCAAG 58.998 45.455 7.24 0.00 39.66 3.61
263 264 2.369860 TGGCATGTTTAATTGTGGCCAA 59.630 40.909 7.24 0.00 46.01 4.52
264 265 1.973515 TGGCATGTTTAATTGTGGCCA 59.026 42.857 0.00 0.00 46.74 5.36
265 266 2.289320 TGTGGCATGTTTAATTGTGGCC 60.289 45.455 0.00 0.00 40.29 5.36
266 267 2.995258 CTGTGGCATGTTTAATTGTGGC 59.005 45.455 0.00 0.00 37.62 5.01
267 268 4.517952 TCTGTGGCATGTTTAATTGTGG 57.482 40.909 0.00 0.00 0.00 4.17
268 269 5.531634 AGTTCTGTGGCATGTTTAATTGTG 58.468 37.500 0.00 0.00 0.00 3.33
269 270 5.789643 AGTTCTGTGGCATGTTTAATTGT 57.210 34.783 0.00 0.00 0.00 2.71
270 271 7.651304 TGTAAAGTTCTGTGGCATGTTTAATTG 59.349 33.333 0.00 0.00 0.00 2.32
271 272 7.721402 TGTAAAGTTCTGTGGCATGTTTAATT 58.279 30.769 0.00 0.00 0.00 1.40
272 273 7.283625 TGTAAAGTTCTGTGGCATGTTTAAT 57.716 32.000 0.00 0.00 0.00 1.40
273 274 6.701145 TGTAAAGTTCTGTGGCATGTTTAA 57.299 33.333 0.00 0.00 0.00 1.52
274 275 6.294453 CCATGTAAAGTTCTGTGGCATGTTTA 60.294 38.462 0.00 0.00 32.77 2.01
275 276 5.509501 CCATGTAAAGTTCTGTGGCATGTTT 60.510 40.000 0.00 0.00 32.77 2.83
276 277 4.022068 CCATGTAAAGTTCTGTGGCATGTT 60.022 41.667 0.00 0.00 32.77 2.71
277 278 3.507233 CCATGTAAAGTTCTGTGGCATGT 59.493 43.478 0.00 0.00 32.77 3.21
278 279 3.119388 CCCATGTAAAGTTCTGTGGCATG 60.119 47.826 0.00 0.00 33.98 4.06
279 280 3.091545 CCCATGTAAAGTTCTGTGGCAT 58.908 45.455 0.00 0.00 0.00 4.40
280 281 2.513753 CCCATGTAAAGTTCTGTGGCA 58.486 47.619 0.00 0.00 0.00 4.92
281 282 1.818674 CCCCATGTAAAGTTCTGTGGC 59.181 52.381 0.00 0.00 0.00 5.01
282 283 2.446435 CCCCCATGTAAAGTTCTGTGG 58.554 52.381 0.00 0.00 0.00 4.17
283 284 1.818674 GCCCCCATGTAAAGTTCTGTG 59.181 52.381 0.00 0.00 0.00 3.66
284 285 1.710809 AGCCCCCATGTAAAGTTCTGT 59.289 47.619 0.00 0.00 0.00 3.41
285 286 2.514458 AGCCCCCATGTAAAGTTCTG 57.486 50.000 0.00 0.00 0.00 3.02
286 287 2.092375 GCTAGCCCCCATGTAAAGTTCT 60.092 50.000 2.29 0.00 0.00 3.01
287 288 2.298610 GCTAGCCCCCATGTAAAGTTC 58.701 52.381 2.29 0.00 0.00 3.01
288 289 1.638589 TGCTAGCCCCCATGTAAAGTT 59.361 47.619 13.29 0.00 0.00 2.66
289 290 1.295020 TGCTAGCCCCCATGTAAAGT 58.705 50.000 13.29 0.00 0.00 2.66
290 291 2.435372 TTGCTAGCCCCCATGTAAAG 57.565 50.000 13.29 0.00 0.00 1.85
291 292 2.042433 ACTTTGCTAGCCCCCATGTAAA 59.958 45.455 13.29 2.35 0.00 2.01
292 293 1.638589 ACTTTGCTAGCCCCCATGTAA 59.361 47.619 13.29 0.00 0.00 2.41
293 294 1.064758 CACTTTGCTAGCCCCCATGTA 60.065 52.381 13.29 0.00 0.00 2.29
294 295 0.323725 CACTTTGCTAGCCCCCATGT 60.324 55.000 13.29 0.00 0.00 3.21
295 296 1.039233 CCACTTTGCTAGCCCCCATG 61.039 60.000 13.29 4.26 0.00 3.66
296 297 1.307647 CCACTTTGCTAGCCCCCAT 59.692 57.895 13.29 0.00 0.00 4.00
297 298 1.725169 AACCACTTTGCTAGCCCCCA 61.725 55.000 13.29 0.00 0.00 4.96
298 299 1.076727 AACCACTTTGCTAGCCCCC 59.923 57.895 13.29 0.00 0.00 5.40
299 300 0.539669 ACAACCACTTTGCTAGCCCC 60.540 55.000 13.29 0.00 39.01 5.80
300 301 0.598065 CACAACCACTTTGCTAGCCC 59.402 55.000 13.29 0.00 39.01 5.19
301 302 0.598065 CCACAACCACTTTGCTAGCC 59.402 55.000 13.29 0.00 39.01 3.93
302 303 1.537202 CTCCACAACCACTTTGCTAGC 59.463 52.381 8.10 8.10 39.01 3.42
303 304 2.154462 CCTCCACAACCACTTTGCTAG 58.846 52.381 0.00 0.00 39.01 3.42
304 305 1.771854 TCCTCCACAACCACTTTGCTA 59.228 47.619 0.00 0.00 39.01 3.49
305 306 0.550914 TCCTCCACAACCACTTTGCT 59.449 50.000 0.00 0.00 39.01 3.91
306 307 0.954452 CTCCTCCACAACCACTTTGC 59.046 55.000 0.00 0.00 39.01 3.68
307 308 2.638480 TCTCCTCCACAACCACTTTG 57.362 50.000 0.00 0.00 41.49 2.77
308 309 2.711009 TGATCTCCTCCACAACCACTTT 59.289 45.455 0.00 0.00 0.00 2.66
309 310 2.338809 TGATCTCCTCCACAACCACTT 58.661 47.619 0.00 0.00 0.00 3.16
310 311 2.030027 TGATCTCCTCCACAACCACT 57.970 50.000 0.00 0.00 0.00 4.00
311 312 2.859165 TTGATCTCCTCCACAACCAC 57.141 50.000 0.00 0.00 0.00 4.16
312 313 3.199946 GGTATTGATCTCCTCCACAACCA 59.800 47.826 0.00 0.00 0.00 3.67
313 314 3.199946 TGGTATTGATCTCCTCCACAACC 59.800 47.826 0.00 0.00 0.00 3.77
314 315 4.487714 TGGTATTGATCTCCTCCACAAC 57.512 45.455 0.00 0.00 0.00 3.32
315 316 4.626287 GCTTGGTATTGATCTCCTCCACAA 60.626 45.833 0.00 0.00 0.00 3.33
316 317 3.118261 GCTTGGTATTGATCTCCTCCACA 60.118 47.826 0.00 0.00 0.00 4.17
317 318 3.135530 AGCTTGGTATTGATCTCCTCCAC 59.864 47.826 0.00 0.00 0.00 4.02
318 319 3.387962 AGCTTGGTATTGATCTCCTCCA 58.612 45.455 0.00 0.00 0.00 3.86
319 320 5.071115 ACTTAGCTTGGTATTGATCTCCTCC 59.929 44.000 0.00 0.00 0.00 4.30
320 321 6.168270 ACTTAGCTTGGTATTGATCTCCTC 57.832 41.667 0.00 0.00 0.00 3.71
321 322 6.567602 AACTTAGCTTGGTATTGATCTCCT 57.432 37.500 0.00 0.00 0.00 3.69
322 323 6.599638 ACAAACTTAGCTTGGTATTGATCTCC 59.400 38.462 0.00 0.00 0.00 3.71
323 324 7.617041 ACAAACTTAGCTTGGTATTGATCTC 57.383 36.000 0.00 0.00 0.00 2.75
324 325 7.665559 TGAACAAACTTAGCTTGGTATTGATCT 59.334 33.333 0.00 0.00 0.00 2.75
325 326 7.750903 GTGAACAAACTTAGCTTGGTATTGATC 59.249 37.037 0.00 4.78 0.00 2.92
326 327 7.309194 GGTGAACAAACTTAGCTTGGTATTGAT 60.309 37.037 0.00 0.00 0.00 2.57
327 328 6.016610 GGTGAACAAACTTAGCTTGGTATTGA 60.017 38.462 0.00 0.00 0.00 2.57
328 329 6.016276 AGGTGAACAAACTTAGCTTGGTATTG 60.016 38.462 0.00 2.51 0.00 1.90
329 330 6.068670 AGGTGAACAAACTTAGCTTGGTATT 58.931 36.000 0.00 0.00 0.00 1.89
330 331 5.631119 AGGTGAACAAACTTAGCTTGGTAT 58.369 37.500 0.00 0.00 0.00 2.73
331 332 5.043737 AGGTGAACAAACTTAGCTTGGTA 57.956 39.130 0.00 0.00 0.00 3.25
332 333 3.883489 GAGGTGAACAAACTTAGCTTGGT 59.117 43.478 0.00 0.00 0.00 3.67
333 334 3.882888 TGAGGTGAACAAACTTAGCTTGG 59.117 43.478 0.00 0.00 0.00 3.61
334 335 5.471456 AGATGAGGTGAACAAACTTAGCTTG 59.529 40.000 0.00 0.00 0.00 4.01
335 336 5.471456 CAGATGAGGTGAACAAACTTAGCTT 59.529 40.000 0.00 0.00 0.00 3.74
336 337 4.999950 CAGATGAGGTGAACAAACTTAGCT 59.000 41.667 0.00 0.00 0.00 3.32
337 338 4.997395 TCAGATGAGGTGAACAAACTTAGC 59.003 41.667 0.00 0.00 0.00 3.09
347 348 3.006430 TGCGTAAGTTCAGATGAGGTGAA 59.994 43.478 0.00 0.00 41.68 3.18
348 349 2.560981 TGCGTAAGTTCAGATGAGGTGA 59.439 45.455 0.00 0.00 41.68 4.02
349 350 2.959516 TGCGTAAGTTCAGATGAGGTG 58.040 47.619 0.00 0.00 41.68 4.00
350 351 3.195610 TCATGCGTAAGTTCAGATGAGGT 59.804 43.478 0.00 0.00 41.68 3.85
351 352 3.785486 TCATGCGTAAGTTCAGATGAGG 58.215 45.455 0.00 0.00 41.68 3.86
352 353 4.676546 TCTCATGCGTAAGTTCAGATGAG 58.323 43.478 0.00 0.00 38.67 2.90
353 354 4.718940 TCTCATGCGTAAGTTCAGATGA 57.281 40.909 0.00 0.00 41.68 2.92
354 355 5.332130 CGATTCTCATGCGTAAGTTCAGATG 60.332 44.000 0.00 0.00 41.68 2.90
355 356 4.742167 CGATTCTCATGCGTAAGTTCAGAT 59.258 41.667 0.00 0.00 41.68 2.90
356 357 4.105486 CGATTCTCATGCGTAAGTTCAGA 58.895 43.478 0.00 0.00 41.68 3.27
357 358 3.243877 CCGATTCTCATGCGTAAGTTCAG 59.756 47.826 0.00 0.00 41.68 3.02
358 359 3.186909 CCGATTCTCATGCGTAAGTTCA 58.813 45.455 0.00 0.00 41.68 3.18
359 360 2.540101 CCCGATTCTCATGCGTAAGTTC 59.460 50.000 0.00 0.00 41.68 3.01
360 361 2.167693 TCCCGATTCTCATGCGTAAGTT 59.832 45.455 0.00 0.00 41.68 2.66
361 362 1.754803 TCCCGATTCTCATGCGTAAGT 59.245 47.619 0.00 0.00 41.68 2.24
362 363 2.509052 TCCCGATTCTCATGCGTAAG 57.491 50.000 0.00 0.00 43.44 2.34
363 364 3.130633 CAATCCCGATTCTCATGCGTAA 58.869 45.455 0.00 0.00 0.00 3.18
364 365 2.102420 ACAATCCCGATTCTCATGCGTA 59.898 45.455 0.00 0.00 0.00 4.42
365 366 1.134401 ACAATCCCGATTCTCATGCGT 60.134 47.619 0.00 0.00 0.00 5.24
366 367 1.586422 ACAATCCCGATTCTCATGCG 58.414 50.000 0.00 0.00 0.00 4.73
367 368 4.999950 AGATTACAATCCCGATTCTCATGC 59.000 41.667 0.00 0.00 36.04 4.06
368 369 5.410746 CCAGATTACAATCCCGATTCTCATG 59.589 44.000 0.00 0.00 36.04 3.07
369 370 5.307976 TCCAGATTACAATCCCGATTCTCAT 59.692 40.000 0.00 0.00 36.04 2.90
370 371 4.653801 TCCAGATTACAATCCCGATTCTCA 59.346 41.667 0.00 0.00 36.04 3.27
371 372 5.215252 TCCAGATTACAATCCCGATTCTC 57.785 43.478 0.00 0.00 36.04 2.87
372 373 5.630415 TTCCAGATTACAATCCCGATTCT 57.370 39.130 0.00 0.00 36.04 2.40
373 374 5.823045 AGTTTCCAGATTACAATCCCGATTC 59.177 40.000 0.00 0.00 36.04 2.52
374 375 5.755849 AGTTTCCAGATTACAATCCCGATT 58.244 37.500 0.00 0.00 36.04 3.34
375 376 5.104527 TGAGTTTCCAGATTACAATCCCGAT 60.105 40.000 0.00 0.00 36.04 4.18
376 377 4.224147 TGAGTTTCCAGATTACAATCCCGA 59.776 41.667 0.00 0.00 36.04 5.14
377 378 4.513442 TGAGTTTCCAGATTACAATCCCG 58.487 43.478 0.00 0.00 36.04 5.14
378 379 5.221126 GCATGAGTTTCCAGATTACAATCCC 60.221 44.000 0.00 0.00 36.04 3.85
379 380 5.504665 CGCATGAGTTTCCAGATTACAATCC 60.505 44.000 0.00 0.00 36.04 3.01
380 381 5.505286 CGCATGAGTTTCCAGATTACAATC 58.495 41.667 0.00 0.00 35.64 2.67
381 382 4.201950 GCGCATGAGTTTCCAGATTACAAT 60.202 41.667 0.30 0.00 0.00 2.71
382 383 3.126858 GCGCATGAGTTTCCAGATTACAA 59.873 43.478 0.30 0.00 0.00 2.41
383 384 2.677836 GCGCATGAGTTTCCAGATTACA 59.322 45.455 0.30 0.00 0.00 2.41
384 385 2.939103 AGCGCATGAGTTTCCAGATTAC 59.061 45.455 11.47 0.00 0.00 1.89
385 386 3.266510 AGCGCATGAGTTTCCAGATTA 57.733 42.857 11.47 0.00 0.00 1.75
386 387 2.119801 AGCGCATGAGTTTCCAGATT 57.880 45.000 11.47 0.00 0.00 2.40
387 388 1.741706 CAAGCGCATGAGTTTCCAGAT 59.258 47.619 11.47 0.00 0.00 2.90
388 389 1.159285 CAAGCGCATGAGTTTCCAGA 58.841 50.000 11.47 0.00 0.00 3.86
389 390 0.455633 GCAAGCGCATGAGTTTCCAG 60.456 55.000 18.15 0.00 38.36 3.86
390 391 0.890542 AGCAAGCGCATGAGTTTCCA 60.891 50.000 18.15 0.00 42.27 3.53
391 392 1.086696 TAGCAAGCGCATGAGTTTCC 58.913 50.000 18.15 0.00 42.27 3.13
392 393 2.900122 TTAGCAAGCGCATGAGTTTC 57.100 45.000 18.15 0.00 42.27 2.78
393 394 2.669391 GCTTTAGCAAGCGCATGAGTTT 60.669 45.455 18.15 0.00 46.06 2.66
394 395 1.135575 GCTTTAGCAAGCGCATGAGTT 60.136 47.619 18.15 3.41 46.06 3.01
395 396 0.449388 GCTTTAGCAAGCGCATGAGT 59.551 50.000 18.15 4.94 46.06 3.41
396 397 3.231222 GCTTTAGCAAGCGCATGAG 57.769 52.632 18.15 5.73 46.06 2.90
406 407 3.063510 AGAGACATTGCAGCTTTAGCA 57.936 42.857 4.33 0.00 45.16 3.49
407 408 3.002144 GCTAGAGACATTGCAGCTTTAGC 59.998 47.826 11.71 11.71 35.92 3.09
408 409 4.440880 AGCTAGAGACATTGCAGCTTTAG 58.559 43.478 0.00 0.00 39.49 1.85
409 410 4.437239 GAGCTAGAGACATTGCAGCTTTA 58.563 43.478 0.00 0.00 42.44 1.85
410 411 3.269178 GAGCTAGAGACATTGCAGCTTT 58.731 45.455 0.00 0.00 42.44 3.51
411 412 2.738000 CGAGCTAGAGACATTGCAGCTT 60.738 50.000 0.00 0.00 42.44 3.74
412 413 1.202394 CGAGCTAGAGACATTGCAGCT 60.202 52.381 0.00 0.00 44.95 4.24
413 414 1.207390 CGAGCTAGAGACATTGCAGC 58.793 55.000 0.00 0.00 0.00 5.25
414 415 2.191802 CACGAGCTAGAGACATTGCAG 58.808 52.381 0.00 0.00 0.00 4.41
415 416 1.134995 CCACGAGCTAGAGACATTGCA 60.135 52.381 0.00 0.00 0.00 4.08
416 417 1.565305 CCACGAGCTAGAGACATTGC 58.435 55.000 0.00 0.00 0.00 3.56
417 418 1.565305 GCCACGAGCTAGAGACATTG 58.435 55.000 0.00 0.00 38.99 2.82
418 419 0.461961 GGCCACGAGCTAGAGACATT 59.538 55.000 0.00 0.00 43.05 2.71
419 420 1.729470 CGGCCACGAGCTAGAGACAT 61.729 60.000 2.24 0.00 44.60 3.06
420 421 2.407428 CGGCCACGAGCTAGAGACA 61.407 63.158 2.24 0.00 44.60 3.41
421 422 2.409651 CGGCCACGAGCTAGAGAC 59.590 66.667 2.24 0.00 44.60 3.36
422 423 3.518998 GCGGCCACGAGCTAGAGA 61.519 66.667 2.24 0.00 44.60 3.10
423 424 4.577246 GGCGGCCACGAGCTAGAG 62.577 72.222 15.62 0.00 44.60 2.43
425 426 4.227134 ATGGCGGCCACGAGCTAG 62.227 66.667 26.48 0.00 44.60 3.42
426 427 4.221422 GATGGCGGCCACGAGCTA 62.221 66.667 26.48 0.00 44.60 3.32
429 430 2.436646 AAAGATGGCGGCCACGAG 60.437 61.111 26.48 0.00 44.60 4.18
430 431 2.745884 CAAAGATGGCGGCCACGA 60.746 61.111 26.48 0.76 44.60 4.35
431 432 3.814268 CCAAAGATGGCGGCCACG 61.814 66.667 26.48 10.34 40.58 4.94
440 441 4.520492 AGGTGTTTCTGTTAGCCAAAGATG 59.480 41.667 0.00 0.00 0.00 2.90
441 442 4.520492 CAGGTGTTTCTGTTAGCCAAAGAT 59.480 41.667 0.00 0.00 0.00 2.40
442 443 3.882888 CAGGTGTTTCTGTTAGCCAAAGA 59.117 43.478 0.00 0.00 0.00 2.52
443 444 3.882888 TCAGGTGTTTCTGTTAGCCAAAG 59.117 43.478 0.00 0.00 36.25 2.77
444 445 3.892284 TCAGGTGTTTCTGTTAGCCAAA 58.108 40.909 0.00 0.00 36.25 3.28
445 446 3.569194 TCAGGTGTTTCTGTTAGCCAA 57.431 42.857 0.00 0.00 36.25 4.52
446 447 3.788227 ATCAGGTGTTTCTGTTAGCCA 57.212 42.857 0.00 0.00 36.25 4.75
447 448 6.759497 AAATATCAGGTGTTTCTGTTAGCC 57.241 37.500 0.00 0.00 36.25 3.93
469 470 7.123547 ACCTCAACAGTGAAAGGAATACAAAAA 59.876 33.333 14.36 0.00 31.88 1.94
470 471 6.605594 ACCTCAACAGTGAAAGGAATACAAAA 59.394 34.615 14.36 0.00 31.88 2.44
471 472 6.039270 CACCTCAACAGTGAAAGGAATACAAA 59.961 38.462 14.36 0.00 37.42 2.83
472 473 5.530915 CACCTCAACAGTGAAAGGAATACAA 59.469 40.000 14.36 0.00 37.42 2.41
473 474 5.063204 CACCTCAACAGTGAAAGGAATACA 58.937 41.667 14.36 0.00 37.42 2.29
474 475 5.063880 ACACCTCAACAGTGAAAGGAATAC 58.936 41.667 14.36 0.00 38.63 1.89
475 476 5.304686 ACACCTCAACAGTGAAAGGAATA 57.695 39.130 14.36 0.00 38.63 1.75
476 477 4.170468 ACACCTCAACAGTGAAAGGAAT 57.830 40.909 14.36 2.77 38.63 3.01
477 478 3.644966 ACACCTCAACAGTGAAAGGAA 57.355 42.857 14.36 0.00 38.63 3.36
478 479 4.764050 TTACACCTCAACAGTGAAAGGA 57.236 40.909 14.36 0.00 38.63 3.36
479 480 8.041323 AGTATATTACACCTCAACAGTGAAAGG 58.959 37.037 0.00 2.84 38.63 3.11
480 481 9.088512 GAGTATATTACACCTCAACAGTGAAAG 57.911 37.037 0.00 0.00 38.63 2.62
481 482 8.038944 GGAGTATATTACACCTCAACAGTGAAA 58.961 37.037 0.00 0.00 38.63 2.69
482 483 7.399191 AGGAGTATATTACACCTCAACAGTGAA 59.601 37.037 0.00 0.00 44.91 3.18
483 484 6.895756 AGGAGTATATTACACCTCAACAGTGA 59.104 38.462 0.00 0.00 44.91 3.41
484 485 7.113658 AGGAGTATATTACACCTCAACAGTG 57.886 40.000 0.00 0.00 44.91 3.66
485 486 7.147707 GGAAGGAGTATATTACACCTCAACAGT 60.148 40.741 4.46 0.00 46.92 3.55
486 487 7.210873 GGAAGGAGTATATTACACCTCAACAG 58.789 42.308 4.46 0.00 46.92 3.16
487 488 6.183360 CGGAAGGAGTATATTACACCTCAACA 60.183 42.308 4.46 0.00 46.92 3.33
488 489 6.183360 ACGGAAGGAGTATATTACACCTCAAC 60.183 42.308 4.46 1.32 46.92 3.18
489 490 5.895534 ACGGAAGGAGTATATTACACCTCAA 59.104 40.000 4.46 0.00 46.92 3.02
490 491 5.452255 ACGGAAGGAGTATATTACACCTCA 58.548 41.667 4.46 0.00 46.92 3.86
491 492 5.048154 GGACGGAAGGAGTATATTACACCTC 60.048 48.000 4.46 0.00 46.92 3.85
493 494 4.021632 GGGACGGAAGGAGTATATTACACC 60.022 50.000 0.00 0.00 39.38 4.16
494 495 4.586001 TGGGACGGAAGGAGTATATTACAC 59.414 45.833 0.00 0.00 0.00 2.90
495 496 4.806892 TGGGACGGAAGGAGTATATTACA 58.193 43.478 0.00 0.00 0.00 2.41
496 497 5.997384 ATGGGACGGAAGGAGTATATTAC 57.003 43.478 0.00 0.00 0.00 1.89
497 498 9.947189 ATATTATGGGACGGAAGGAGTATATTA 57.053 33.333 0.00 0.00 0.00 0.98
498 499 8.855804 ATATTATGGGACGGAAGGAGTATATT 57.144 34.615 0.00 0.00 0.00 1.28
499 500 9.947189 TTATATTATGGGACGGAAGGAGTATAT 57.053 33.333 0.00 0.00 0.00 0.86
500 501 9.417561 CTTATATTATGGGACGGAAGGAGTATA 57.582 37.037 0.00 0.00 0.00 1.47
501 502 8.120538 TCTTATATTATGGGACGGAAGGAGTAT 58.879 37.037 0.00 0.00 0.00 2.12
502 503 7.472741 TCTTATATTATGGGACGGAAGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
503 504 6.320518 TCTTATATTATGGGACGGAAGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
504 505 6.628398 GCTCTTATATTATGGGACGGAAGGAG 60.628 46.154 0.00 0.00 0.00 3.69
505 506 5.187186 GCTCTTATATTATGGGACGGAAGGA 59.813 44.000 0.00 0.00 0.00 3.36
506 507 5.420409 GCTCTTATATTATGGGACGGAAGG 58.580 45.833 0.00 0.00 0.00 3.46
507 508 5.103000 CGCTCTTATATTATGGGACGGAAG 58.897 45.833 0.00 0.00 0.00 3.46
508 509 4.525487 ACGCTCTTATATTATGGGACGGAA 59.475 41.667 0.00 0.00 0.00 4.30
509 510 4.084287 ACGCTCTTATATTATGGGACGGA 58.916 43.478 0.00 0.00 0.00 4.69
510 511 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
511 512 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
512 513 9.874215 GTTAAAAACGCTCTTATATTATGGGAC 57.126 33.333 0.00 0.00 0.00 4.46
513 514 9.616156 TGTTAAAAACGCTCTTATATTATGGGA 57.384 29.630 0.00 0.00 0.00 4.37
514 515 9.659830 GTGTTAAAAACGCTCTTATATTATGGG 57.340 33.333 0.00 0.00 38.81 4.00
539 540 6.071840 AAGAGCGTTCTTGACACTAGAATAGT 60.072 38.462 14.17 0.00 46.95 2.12
540 541 5.885881 AGAGCGTTCTTGACACTAGAATAG 58.114 41.667 0.00 0.00 46.50 1.73
541 542 5.899120 AGAGCGTTCTTGACACTAGAATA 57.101 39.130 0.00 0.00 34.42 1.75
542 543 4.792521 AGAGCGTTCTTGACACTAGAAT 57.207 40.909 0.00 0.00 34.42 2.40
543 544 4.585955 AAGAGCGTTCTTGACACTAGAA 57.414 40.909 14.17 0.00 42.04 2.10
544 545 5.899120 ATAAGAGCGTTCTTGACACTAGA 57.101 39.130 22.97 2.22 43.41 2.43
545 546 9.171701 GTAATATAAGAGCGTTCTTGACACTAG 57.828 37.037 22.97 0.00 43.41 2.57
546 547 7.854422 CGTAATATAAGAGCGTTCTTGACACTA 59.146 37.037 22.97 3.67 43.41 2.74
547 548 6.691818 CGTAATATAAGAGCGTTCTTGACACT 59.308 38.462 22.97 7.52 43.41 3.55
548 549 6.074994 CCGTAATATAAGAGCGTTCTTGACAC 60.075 42.308 22.97 12.44 43.41 3.67
549 550 5.975344 CCGTAATATAAGAGCGTTCTTGACA 59.025 40.000 22.97 9.18 43.41 3.58
550 551 5.401674 CCCGTAATATAAGAGCGTTCTTGAC 59.598 44.000 22.97 11.99 43.41 3.18
551 552 5.300034 TCCCGTAATATAAGAGCGTTCTTGA 59.700 40.000 22.97 11.99 43.41 3.02
552 553 5.401674 GTCCCGTAATATAAGAGCGTTCTTG 59.598 44.000 22.97 5.64 43.41 3.02
553 554 5.301298 AGTCCCGTAATATAAGAGCGTTCTT 59.699 40.000 18.78 18.78 45.45 2.52
554 555 4.826183 AGTCCCGTAATATAAGAGCGTTCT 59.174 41.667 0.00 0.00 34.29 3.01
555 556 4.916249 CAGTCCCGTAATATAAGAGCGTTC 59.084 45.833 0.00 0.00 0.00 3.95
556 557 4.581824 TCAGTCCCGTAATATAAGAGCGTT 59.418 41.667 0.00 0.00 0.00 4.84
557 558 4.139786 TCAGTCCCGTAATATAAGAGCGT 58.860 43.478 0.00 0.00 0.00 5.07
558 559 4.379603 CCTCAGTCCCGTAATATAAGAGCG 60.380 50.000 0.00 0.00 0.00 5.03
559 560 4.082136 CCCTCAGTCCCGTAATATAAGAGC 60.082 50.000 0.00 0.00 0.00 4.09
560 561 5.322754 TCCCTCAGTCCCGTAATATAAGAG 58.677 45.833 0.00 0.00 0.00 2.85
561 562 5.163012 ACTCCCTCAGTCCCGTAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
562 563 5.078256 ACTCCCTCAGTCCCGTAATATAAG 58.922 45.833 0.00 0.00 0.00 1.73
563 564 5.070823 ACTCCCTCAGTCCCGTAATATAA 57.929 43.478 0.00 0.00 0.00 0.98
564 565 4.736611 ACTCCCTCAGTCCCGTAATATA 57.263 45.455 0.00 0.00 0.00 0.86
565 566 3.614568 ACTCCCTCAGTCCCGTAATAT 57.385 47.619 0.00 0.00 0.00 1.28
566 567 3.749954 GCTACTCCCTCAGTCCCGTAATA 60.750 52.174 0.00 0.00 36.43 0.98
567 568 2.946785 CTACTCCCTCAGTCCCGTAAT 58.053 52.381 0.00 0.00 36.43 1.89
568 569 1.684248 GCTACTCCCTCAGTCCCGTAA 60.684 57.143 0.00 0.00 36.43 3.18
569 570 0.106819 GCTACTCCCTCAGTCCCGTA 60.107 60.000 0.00 0.00 36.43 4.02
570 571 1.380112 GCTACTCCCTCAGTCCCGT 60.380 63.158 0.00 0.00 36.43 5.28
571 572 1.379977 TGCTACTCCCTCAGTCCCG 60.380 63.158 0.00 0.00 36.43 5.14
572 573 1.681486 GCTGCTACTCCCTCAGTCCC 61.681 65.000 0.00 0.00 36.43 4.46
573 574 0.686112 AGCTGCTACTCCCTCAGTCC 60.686 60.000 0.00 0.00 36.43 3.85
574 575 1.190643 AAGCTGCTACTCCCTCAGTC 58.809 55.000 0.90 0.00 36.43 3.51
575 576 1.650528 AAAGCTGCTACTCCCTCAGT 58.349 50.000 0.90 0.00 39.41 3.41
576 577 2.777832 AAAAGCTGCTACTCCCTCAG 57.222 50.000 0.90 0.00 0.00 3.35
577 578 2.093447 GCTAAAAGCTGCTACTCCCTCA 60.093 50.000 0.90 0.00 38.45 3.86
578 579 2.556257 GCTAAAAGCTGCTACTCCCTC 58.444 52.381 0.90 0.00 38.45 4.30
579 580 1.210722 GGCTAAAAGCTGCTACTCCCT 59.789 52.381 0.90 0.00 41.99 4.20
580 581 1.210722 AGGCTAAAAGCTGCTACTCCC 59.789 52.381 0.90 0.27 41.99 4.30
581 582 2.700722 AGGCTAAAAGCTGCTACTCC 57.299 50.000 0.90 0.40 41.99 3.85
582 583 6.496338 TTTTTAGGCTAAAAGCTGCTACTC 57.504 37.500 26.22 0.00 41.99 2.59
603 604 6.141685 CGCTTTACGTCAAAATGTAGCTTTTT 59.858 34.615 0.00 0.00 36.87 1.94
604 605 5.623673 CGCTTTACGTCAAAATGTAGCTTTT 59.376 36.000 0.00 0.00 36.87 2.27
605 606 5.144359 CGCTTTACGTCAAAATGTAGCTTT 58.856 37.500 0.00 0.00 36.87 3.51
606 607 4.708601 CGCTTTACGTCAAAATGTAGCTT 58.291 39.130 0.00 0.00 36.87 3.74
607 608 3.424433 GCGCTTTACGTCAAAATGTAGCT 60.424 43.478 0.00 0.00 46.11 3.32
608 609 2.838452 GCGCTTTACGTCAAAATGTAGC 59.162 45.455 0.00 0.00 46.11 3.58
609 610 3.081445 CGCGCTTTACGTCAAAATGTAG 58.919 45.455 5.56 0.00 46.11 2.74
610 611 2.475864 ACGCGCTTTACGTCAAAATGTA 59.524 40.909 5.73 0.00 46.11 2.29
611 612 1.262151 ACGCGCTTTACGTCAAAATGT 59.738 42.857 5.73 0.00 46.11 2.71
612 613 1.945207 ACGCGCTTTACGTCAAAATG 58.055 45.000 5.73 0.00 46.11 2.32
620 621 7.418034 AAATCCCTATTTGACGCGCTTTACG 62.418 44.000 5.73 0.00 38.19 3.18
621 622 2.273557 TCCCTATTTGACGCGCTTTAC 58.726 47.619 5.73 0.00 0.00 2.01
622 623 2.676632 TCCCTATTTGACGCGCTTTA 57.323 45.000 5.73 0.00 0.00 1.85
623 624 2.038387 ATCCCTATTTGACGCGCTTT 57.962 45.000 5.73 0.00 0.00 3.51
624 625 2.038387 AATCCCTATTTGACGCGCTT 57.962 45.000 5.73 0.00 0.00 4.68
625 626 1.940613 GAAATCCCTATTTGACGCGCT 59.059 47.619 5.73 0.00 35.41 5.92
626 627 1.668751 TGAAATCCCTATTTGACGCGC 59.331 47.619 5.73 0.00 35.41 6.86
627 628 3.374058 AGTTGAAATCCCTATTTGACGCG 59.626 43.478 3.53 3.53 35.41 6.01
628 629 4.394920 TGAGTTGAAATCCCTATTTGACGC 59.605 41.667 0.00 0.00 35.41 5.19
629 630 6.494893 TTGAGTTGAAATCCCTATTTGACG 57.505 37.500 0.00 0.00 35.41 4.35
630 631 7.039714 AGGTTTGAGTTGAAATCCCTATTTGAC 60.040 37.037 0.00 0.00 35.41 3.18
631 632 7.010160 AGGTTTGAGTTGAAATCCCTATTTGA 58.990 34.615 0.00 0.00 35.41 2.69
632 633 7.232118 AGGTTTGAGTTGAAATCCCTATTTG 57.768 36.000 0.00 0.00 35.41 2.32
633 634 6.151144 CGAGGTTTGAGTTGAAATCCCTATTT 59.849 38.462 0.00 0.00 38.03 1.40
634 635 5.648092 CGAGGTTTGAGTTGAAATCCCTATT 59.352 40.000 0.00 0.00 0.00 1.73
635 636 5.045869 TCGAGGTTTGAGTTGAAATCCCTAT 60.046 40.000 0.00 0.00 0.00 2.57
636 637 4.285003 TCGAGGTTTGAGTTGAAATCCCTA 59.715 41.667 0.00 0.00 0.00 3.53
637 638 3.072476 TCGAGGTTTGAGTTGAAATCCCT 59.928 43.478 0.00 0.00 0.00 4.20
638 639 3.408634 TCGAGGTTTGAGTTGAAATCCC 58.591 45.455 0.00 0.00 0.00 3.85
639 640 4.095036 GGATCGAGGTTTGAGTTGAAATCC 59.905 45.833 0.00 0.00 0.00 3.01
640 641 4.201724 CGGATCGAGGTTTGAGTTGAAATC 60.202 45.833 0.00 0.00 0.00 2.17
641 642 3.684788 CGGATCGAGGTTTGAGTTGAAAT 59.315 43.478 0.00 0.00 0.00 2.17
642 643 3.064207 CGGATCGAGGTTTGAGTTGAAA 58.936 45.455 0.00 0.00 0.00 2.69
643 644 2.611971 CCGGATCGAGGTTTGAGTTGAA 60.612 50.000 0.00 0.00 0.00 2.69
644 645 1.067142 CCGGATCGAGGTTTGAGTTGA 60.067 52.381 0.00 0.00 0.00 3.18
645 646 1.337823 ACCGGATCGAGGTTTGAGTTG 60.338 52.381 9.46 0.00 39.29 3.16
646 647 0.974383 ACCGGATCGAGGTTTGAGTT 59.026 50.000 9.46 0.00 39.29 3.01
647 648 1.843368 TACCGGATCGAGGTTTGAGT 58.157 50.000 9.46 0.00 42.81 3.41
648 649 2.288273 GGATACCGGATCGAGGTTTGAG 60.288 54.545 9.46 0.00 42.81 3.02
649 650 1.684983 GGATACCGGATCGAGGTTTGA 59.315 52.381 9.46 0.49 42.81 2.69
650 651 1.411246 TGGATACCGGATCGAGGTTTG 59.589 52.381 9.46 0.00 42.81 2.93
651 652 1.687123 CTGGATACCGGATCGAGGTTT 59.313 52.381 9.46 8.82 42.81 3.27
652 653 1.329256 CTGGATACCGGATCGAGGTT 58.671 55.000 9.46 5.43 42.81 3.50
653 654 1.179814 GCTGGATACCGGATCGAGGT 61.180 60.000 9.46 14.68 39.98 3.85
654 655 0.896019 AGCTGGATACCGGATCGAGG 60.896 60.000 9.46 4.50 39.98 4.63
655 656 0.523966 GAGCTGGATACCGGATCGAG 59.476 60.000 9.46 14.24 41.94 4.04
656 657 2.642425 GAGCTGGATACCGGATCGA 58.358 57.895 9.46 3.36 35.54 3.59
664 665 2.291190 GACGTAGGTCTGAGCTGGATAC 59.709 54.545 18.98 8.33 40.15 2.24
673 674 1.664873 CAGATCCGACGTAGGTCTGA 58.335 55.000 27.23 12.29 41.16 3.27
789 792 1.804326 CGCTACCGGAGTTGGAACG 60.804 63.158 9.46 0.00 0.00 3.95
1068 1085 2.670592 TCGAGGAACGCCGAGACA 60.671 61.111 0.00 0.00 42.26 3.41
1357 1375 2.696989 ATGGATCACATCTTGACGCA 57.303 45.000 0.00 0.00 36.92 5.24
1471 1492 1.741706 CCTAGACAAACATGCCTGCTG 59.258 52.381 0.00 0.00 0.00 4.41
1608 1640 6.635030 ACCAAATTTAGGAGTTCACTTGTC 57.365 37.500 11.98 0.00 0.00 3.18
1616 1648 5.820423 GCCAACAAAACCAAATTTAGGAGTT 59.180 36.000 11.98 2.55 0.00 3.01
1911 3135 5.545723 GGAGGGGATAGATTTGATCTCTTCA 59.454 44.000 0.00 0.00 40.76 3.02
2307 3535 7.303182 TCCACTTATGCATAGTTGTAGCTAT 57.697 36.000 6.50 0.00 32.33 2.97
2337 3567 2.488153 GCCGGCTTTAGAAGAACACATT 59.512 45.455 22.15 0.00 0.00 2.71
2451 3681 8.771920 TGAACTATGGTAATACTTCAACACAG 57.228 34.615 0.00 0.00 0.00 3.66
2704 3934 5.549347 TGGCAAACAAATAAAGCACATCAT 58.451 33.333 0.00 0.00 0.00 2.45
2861 4617 7.484641 CGTATTTCATTTGACATGTCGGAAAAT 59.515 33.333 25.08 20.14 0.00 1.82
2867 4623 4.646960 TGCGTATTTCATTTGACATGTCG 58.353 39.130 20.54 6.74 0.00 4.35
2963 4807 9.342308 TGCACAATCTTATATTTCTTTAGAGGG 57.658 33.333 0.00 0.00 0.00 4.30
2985 4829 9.593134 TGTGATTTATTTTGGGTTAATATGCAC 57.407 29.630 0.00 0.00 0.00 4.57
3019 4863 9.566432 CCTCTGTAAAGAAATATAAGAATGGCT 57.434 33.333 0.00 0.00 0.00 4.75
3020 4864 9.343539 ACCTCTGTAAAGAAATATAAGAATGGC 57.656 33.333 0.00 0.00 0.00 4.40
3077 4921 5.357878 TCTGCTTCTTTGGGTTAATATGCAG 59.642 40.000 0.00 0.00 43.53 4.41
3106 4950 6.699575 ATTGCCGAGTATTTTCTAAAGCAT 57.300 33.333 0.00 0.00 0.00 3.79
3267 5111 6.921857 CCTACTACCGAACCATATAAACACAG 59.078 42.308 0.00 0.00 0.00 3.66
3435 5279 2.166459 GCCAATTGTAGGAAAAGGGAGC 59.834 50.000 4.43 0.00 0.00 4.70
3657 5501 4.799564 TGGATGGAAGCAATAACCAAAC 57.200 40.909 0.00 0.00 37.24 2.93
3684 5528 4.006319 GTCAATAAGAGTGCTCTGCCTTT 58.994 43.478 2.11 0.00 40.36 3.11
3701 5545 5.566826 CGACATGGATTAGATACCGGTCAAT 60.567 44.000 12.40 6.88 34.82 2.57
3723 5567 2.584236 GTACCTATTCAGGAGAGGCGA 58.416 52.381 0.00 0.00 45.91 5.54
3725 5569 2.965562 AGGTACCTATTCAGGAGAGGC 58.034 52.381 14.41 0.00 45.91 4.70
3758 5602 5.221126 GGGTATGACAGAAGCCATGAATTTC 60.221 44.000 0.00 0.00 33.37 2.17
3855 5699 3.863142 AGATGAGATTTTGCTGTTGGC 57.137 42.857 0.00 0.00 42.22 4.52
3856 5700 6.145048 GTGAAAAGATGAGATTTTGCTGTTGG 59.855 38.462 0.00 0.00 30.22 3.77
3857 5701 6.698329 TGTGAAAAGATGAGATTTTGCTGTTG 59.302 34.615 0.00 0.00 30.22 3.33
3858 5702 6.808829 TGTGAAAAGATGAGATTTTGCTGTT 58.191 32.000 0.00 0.00 30.22 3.16
3859 5703 6.395426 TGTGAAAAGATGAGATTTTGCTGT 57.605 33.333 0.00 0.00 30.22 4.40
3860 5704 7.061905 GTCATGTGAAAAGATGAGATTTTGCTG 59.938 37.037 0.00 0.00 30.22 4.41
3861 5705 7.088905 GTCATGTGAAAAGATGAGATTTTGCT 58.911 34.615 0.00 0.00 30.22 3.91
3975 5827 7.028926 ACTGATGTAGTTATACAGTTCCGAG 57.971 40.000 0.00 0.00 44.90 4.63
3999 5851 4.100963 TGTTCTCTCTCAGGCTACAAACAA 59.899 41.667 0.00 0.00 0.00 2.83
4003 5855 3.230976 TGTGTTCTCTCTCAGGCTACAA 58.769 45.455 0.00 0.00 0.00 2.41
4004 5856 2.876581 TGTGTTCTCTCTCAGGCTACA 58.123 47.619 0.00 0.00 0.00 2.74
4005 5857 4.464069 AATGTGTTCTCTCTCAGGCTAC 57.536 45.455 0.00 0.00 0.00 3.58
4006 5858 6.609212 AGATAAATGTGTTCTCTCTCAGGCTA 59.391 38.462 0.00 0.00 0.00 3.93
4008 5860 5.669477 AGATAAATGTGTTCTCTCTCAGGC 58.331 41.667 0.00 0.00 0.00 4.85
4009 5861 6.871844 TGAGATAAATGTGTTCTCTCTCAGG 58.128 40.000 0.00 0.00 37.40 3.86
4081 6016 1.102978 ACACCAACAAACAGTCAGCC 58.897 50.000 0.00 0.00 0.00 4.85
4119 6054 2.129555 GACCAGCCTGCCTTCTTGGA 62.130 60.000 1.82 0.00 38.35 3.53
4131 6066 3.499737 CGGCGACAATGACCAGCC 61.500 66.667 0.00 0.00 44.00 4.85
4378 6331 7.525688 TGATCTAATCTGAACGCAAACTAAG 57.474 36.000 0.00 0.00 0.00 2.18
4381 6334 4.331168 GCTGATCTAATCTGAACGCAAACT 59.669 41.667 0.00 0.00 0.00 2.66
4422 6375 3.328382 TTCAAACCACCGAGTATGAGG 57.672 47.619 0.00 0.00 0.00 3.86
4436 6389 5.028375 CGAACAGACTTTCAGGTTTCAAAC 58.972 41.667 0.00 0.00 0.00 2.93
4454 6408 1.626321 TGGAGATGCCCTAAACGAACA 59.374 47.619 0.00 0.00 34.97 3.18
4489 6443 1.070175 CCGACAAACAATGTGTCCGTC 60.070 52.381 0.00 0.00 44.12 4.79
4491 6445 0.941542 ACCGACAAACAATGTGTCCG 59.058 50.000 0.00 0.00 44.12 4.79
4544 6498 0.252197 AGTGCGGACATTTAGGGGAC 59.748 55.000 10.52 0.00 0.00 4.46
4580 6534 6.924060 ACTATATTAGTTTCACTGATGCGGAC 59.076 38.462 0.00 0.00 34.86 4.79
4707 6662 8.259872 GCGTCAAAGATTTAAGAAAGAAACAAC 58.740 33.333 0.00 0.00 0.00 3.32
4708 6663 8.188139 AGCGTCAAAGATTTAAGAAAGAAACAA 58.812 29.630 0.00 0.00 0.00 2.83
4726 6681 9.611284 GATATGCATATTATTTTGAGCGTCAAA 57.389 29.630 20.00 8.47 43.84 2.69
4727 6682 8.782144 TGATATGCATATTATTTTGAGCGTCAA 58.218 29.630 20.00 0.00 34.03 3.18
4762 6721 7.657354 GCATTTATTTTTCACTCCAAACCTTCT 59.343 33.333 0.00 0.00 0.00 2.85
4770 6729 5.798125 TGTGGCATTTATTTTTCACTCCA 57.202 34.783 0.00 0.00 0.00 3.86
4771 6730 8.034804 ACTATTGTGGCATTTATTTTTCACTCC 58.965 33.333 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.