Multiple sequence alignment - TraesCS1D01G221500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G221500 chr1D 100.000 2837 0 0 1 2837 309086830 309089666 0.000000e+00 5240.0
1 TraesCS1D01G221500 chr1B 93.994 2614 88 34 243 2837 418820448 418823011 0.000000e+00 3893.0
2 TraesCS1D01G221500 chr1B 96.610 59 2 0 2 60 418820399 418820457 6.470000e-17 99.0
3 TraesCS1D01G221500 chr1A 91.638 2057 78 35 821 2837 388848966 388850968 0.000000e+00 2760.0
4 TraesCS1D01G221500 chr1A 95.785 261 8 1 571 828 388847442 388847702 4.370000e-113 418.0
5 TraesCS1D01G221500 chr6A 85.911 291 32 8 1238 1525 465389758 465390042 4.590000e-78 302.0
6 TraesCS1D01G221500 chr2A 86.545 275 32 4 1254 1527 672265685 672265415 5.940000e-77 298.0
7 TraesCS1D01G221500 chr2A 85.985 264 32 3 1265 1527 672292459 672292200 7.740000e-71 278.0
8 TraesCS1D01G221500 chr6B 85.274 292 34 8 1237 1525 495543803 495543518 2.760000e-75 292.0
9 TraesCS1D01G221500 chr6D 84.880 291 35 8 1238 1525 326760682 326760966 4.630000e-73 285.0
10 TraesCS1D01G221500 chr2D 85.401 274 37 2 1254 1527 527272567 527272297 5.980000e-72 281.0
11 TraesCS1D01G221500 chr2D 85.985 264 32 4 1265 1527 527293785 527293526 7.740000e-71 278.0
12 TraesCS1D01G221500 chr3A 92.432 185 12 2 62 244 731029648 731029832 2.170000e-66 263.0
13 TraesCS1D01G221500 chr4D 90.845 142 10 3 91 230 483490686 483490546 1.340000e-43 187.0
14 TraesCS1D01G221500 chr7A 95.238 42 2 0 205 246 177138090 177138049 1.820000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G221500 chr1D 309086830 309089666 2836 False 5240 5240 100.0000 1 2837 1 chr1D.!!$F1 2836
1 TraesCS1D01G221500 chr1B 418820399 418823011 2612 False 1996 3893 95.3020 2 2837 2 chr1B.!!$F1 2835
2 TraesCS1D01G221500 chr1A 388847442 388850968 3526 False 1589 2760 93.7115 571 2837 2 chr1A.!!$F1 2266

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
128 129 0.178964 TCTTGTTGGGAGGGCCAAAG 60.179 55.0 6.18 0.0 35.15 2.77 F
250 251 0.179045 GCCTCCGCCACTGATAACAT 60.179 55.0 0.00 0.0 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1549 2845 0.683179 TCCGACTGATCCGTGGACAT 60.683 55.000 0.83 0.0 0.0 3.06 R
2142 3454 2.027653 TCCAAGCATAACGATCCACACA 60.028 45.455 0.00 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 5.221561 ACATATAAGCACCGCTTGTATACCA 60.222 40.000 14.94 0.00 46.05 3.25
66 67 8.904099 AGTATTAAATGATAACACCTAGTGGC 57.096 34.615 0.00 0.00 37.94 5.01
67 68 8.491134 AGTATTAAATGATAACACCTAGTGGCA 58.509 33.333 0.00 0.00 37.94 4.92
68 69 7.807977 ATTAAATGATAACACCTAGTGGCAG 57.192 36.000 0.00 0.00 37.94 4.85
69 70 5.435686 AAATGATAACACCTAGTGGCAGA 57.564 39.130 0.00 0.00 37.94 4.26
70 71 4.679373 ATGATAACACCTAGTGGCAGAG 57.321 45.455 0.00 0.00 37.94 3.35
71 72 2.168521 TGATAACACCTAGTGGCAGAGC 59.831 50.000 0.00 0.00 37.94 4.09
86 87 4.790765 GCAGAGCCAGGAAAACTTAATT 57.209 40.909 0.00 0.00 0.00 1.40
87 88 5.897377 GCAGAGCCAGGAAAACTTAATTA 57.103 39.130 0.00 0.00 0.00 1.40
88 89 5.884771 GCAGAGCCAGGAAAACTTAATTAG 58.115 41.667 0.00 0.00 0.00 1.73
89 90 5.163612 GCAGAGCCAGGAAAACTTAATTAGG 60.164 44.000 0.00 0.00 0.00 2.69
90 91 5.358160 CAGAGCCAGGAAAACTTAATTAGGG 59.642 44.000 0.00 0.00 0.00 3.53
91 92 4.610333 AGCCAGGAAAACTTAATTAGGGG 58.390 43.478 0.00 0.00 0.00 4.79
92 93 3.704566 GCCAGGAAAACTTAATTAGGGGG 59.295 47.826 0.00 0.00 0.00 5.40
107 108 3.681909 GGGGGCCAACTGATGTTAA 57.318 52.632 4.39 0.00 34.60 2.01
108 109 1.931635 GGGGGCCAACTGATGTTAAA 58.068 50.000 4.39 0.00 34.60 1.52
109 110 2.466846 GGGGGCCAACTGATGTTAAAT 58.533 47.619 4.39 0.00 34.60 1.40
110 111 2.430694 GGGGGCCAACTGATGTTAAATC 59.569 50.000 4.39 0.00 34.60 2.17
111 112 3.365472 GGGGCCAACTGATGTTAAATCT 58.635 45.455 4.39 0.00 34.60 2.40
112 113 3.769300 GGGGCCAACTGATGTTAAATCTT 59.231 43.478 4.39 0.00 34.60 2.40
113 114 4.381932 GGGGCCAACTGATGTTAAATCTTG 60.382 45.833 4.39 0.00 34.60 3.02
114 115 4.220602 GGGCCAACTGATGTTAAATCTTGT 59.779 41.667 4.39 0.00 34.60 3.16
115 116 5.279456 GGGCCAACTGATGTTAAATCTTGTT 60.279 40.000 4.39 0.00 34.60 2.83
116 117 5.634859 GGCCAACTGATGTTAAATCTTGTTG 59.365 40.000 0.00 11.74 34.60 3.33
117 118 5.634859 GCCAACTGATGTTAAATCTTGTTGG 59.365 40.000 23.26 23.26 45.03 3.77
118 119 6.158598 CCAACTGATGTTAAATCTTGTTGGG 58.841 40.000 21.49 11.02 42.38 4.12
119 120 6.015519 CCAACTGATGTTAAATCTTGTTGGGA 60.016 38.462 21.49 0.00 42.38 4.37
120 121 6.824305 ACTGATGTTAAATCTTGTTGGGAG 57.176 37.500 0.00 0.00 0.00 4.30
121 122 5.711976 ACTGATGTTAAATCTTGTTGGGAGG 59.288 40.000 0.00 0.00 0.00 4.30
122 123 5.016173 TGATGTTAAATCTTGTTGGGAGGG 58.984 41.667 0.00 0.00 0.00 4.30
123 124 3.161866 TGTTAAATCTTGTTGGGAGGGC 58.838 45.455 0.00 0.00 0.00 5.19
124 125 2.496070 GTTAAATCTTGTTGGGAGGGCC 59.504 50.000 0.00 0.00 0.00 5.80
125 126 0.486879 AAATCTTGTTGGGAGGGCCA 59.513 50.000 6.18 0.00 35.15 5.36
126 127 0.486879 AATCTTGTTGGGAGGGCCAA 59.513 50.000 6.18 0.00 35.15 4.52
127 128 0.486879 ATCTTGTTGGGAGGGCCAAA 59.513 50.000 6.18 0.00 35.15 3.28
128 129 0.178964 TCTTGTTGGGAGGGCCAAAG 60.179 55.000 6.18 0.00 35.15 2.77
129 130 1.820010 CTTGTTGGGAGGGCCAAAGC 61.820 60.000 6.18 0.00 35.15 3.51
140 141 3.610637 GCCAAAGCCAGCAAAATCA 57.389 47.368 0.00 0.00 0.00 2.57
141 142 2.103537 GCCAAAGCCAGCAAAATCAT 57.896 45.000 0.00 0.00 0.00 2.45
142 143 1.735571 GCCAAAGCCAGCAAAATCATG 59.264 47.619 0.00 0.00 0.00 3.07
143 144 2.613474 GCCAAAGCCAGCAAAATCATGA 60.613 45.455 0.00 0.00 0.00 3.07
144 145 3.869065 CCAAAGCCAGCAAAATCATGAT 58.131 40.909 1.18 1.18 0.00 2.45
145 146 4.681244 GCCAAAGCCAGCAAAATCATGATA 60.681 41.667 9.04 0.00 0.00 2.15
146 147 5.421277 CCAAAGCCAGCAAAATCATGATAA 58.579 37.500 9.04 0.00 0.00 1.75
147 148 6.053005 CCAAAGCCAGCAAAATCATGATAAT 58.947 36.000 9.04 0.00 0.00 1.28
148 149 6.018262 CCAAAGCCAGCAAAATCATGATAATG 60.018 38.462 9.04 11.90 0.00 1.90
149 150 4.628074 AGCCAGCAAAATCATGATAATGC 58.372 39.130 26.48 26.48 34.60 3.56
150 151 4.100344 AGCCAGCAAAATCATGATAATGCA 59.900 37.500 31.26 0.00 35.94 3.96
151 152 4.210537 GCCAGCAAAATCATGATAATGCAC 59.789 41.667 31.26 21.96 35.94 4.57
152 153 5.353111 CCAGCAAAATCATGATAATGCACA 58.647 37.500 31.26 0.00 35.94 4.57
153 154 5.462068 CCAGCAAAATCATGATAATGCACAG 59.538 40.000 31.26 23.66 35.94 3.66
154 155 6.270064 CAGCAAAATCATGATAATGCACAGA 58.730 36.000 31.26 0.00 35.94 3.41
155 156 6.754675 CAGCAAAATCATGATAATGCACAGAA 59.245 34.615 31.26 0.00 35.94 3.02
156 157 7.438160 CAGCAAAATCATGATAATGCACAGAAT 59.562 33.333 31.26 16.82 35.94 2.40
157 158 7.985184 AGCAAAATCATGATAATGCACAGAATT 59.015 29.630 31.26 16.32 35.94 2.17
158 159 9.251792 GCAAAATCATGATAATGCACAGAATTA 57.748 29.630 27.81 0.00 34.56 1.40
160 161 9.472361 AAAATCATGATAATGCACAGAATTAGC 57.528 29.630 9.04 0.00 0.00 3.09
161 162 7.754851 ATCATGATAATGCACAGAATTAGCA 57.245 32.000 6.36 0.00 39.45 3.49
162 163 7.198306 TCATGATAATGCACAGAATTAGCAG 57.802 36.000 0.00 0.00 38.77 4.24
163 164 5.428496 TGATAATGCACAGAATTAGCAGC 57.572 39.130 0.00 0.00 42.14 5.25
164 165 4.883006 TGATAATGCACAGAATTAGCAGCA 59.117 37.500 0.00 0.00 42.14 4.41
165 166 3.777465 AATGCACAGAATTAGCAGCAG 57.223 42.857 0.00 0.00 42.14 4.24
166 167 1.456296 TGCACAGAATTAGCAGCAGG 58.544 50.000 0.00 0.00 33.75 4.85
167 168 1.271543 TGCACAGAATTAGCAGCAGGT 60.272 47.619 0.00 0.00 33.75 4.00
168 169 2.027285 TGCACAGAATTAGCAGCAGGTA 60.027 45.455 0.00 0.00 33.75 3.08
169 170 3.009723 GCACAGAATTAGCAGCAGGTAA 58.990 45.455 3.10 3.10 41.47 2.85
171 172 4.260948 GCACAGAATTAGCAGCAGGTAATC 60.261 45.833 13.11 7.81 45.08 1.75
172 173 4.877823 CACAGAATTAGCAGCAGGTAATCA 59.122 41.667 13.11 0.00 45.08 2.57
173 174 4.878397 ACAGAATTAGCAGCAGGTAATCAC 59.122 41.667 13.11 10.62 45.08 3.06
174 175 5.121811 CAGAATTAGCAGCAGGTAATCACT 58.878 41.667 13.11 12.31 45.08 3.41
175 176 5.587844 CAGAATTAGCAGCAGGTAATCACTT 59.412 40.000 13.11 0.00 45.08 3.16
176 177 6.763135 CAGAATTAGCAGCAGGTAATCACTTA 59.237 38.462 13.11 0.00 45.08 2.24
177 178 7.443575 CAGAATTAGCAGCAGGTAATCACTTAT 59.556 37.037 13.11 0.00 45.08 1.73
178 179 7.443575 AGAATTAGCAGCAGGTAATCACTTATG 59.556 37.037 13.11 0.00 45.08 1.90
179 180 4.494091 AGCAGCAGGTAATCACTTATGT 57.506 40.909 0.00 0.00 0.00 2.29
180 181 4.194640 AGCAGCAGGTAATCACTTATGTG 58.805 43.478 2.36 2.36 45.07 3.21
181 182 3.941483 GCAGCAGGTAATCACTTATGTGT 59.059 43.478 8.46 0.00 44.14 3.72
182 183 4.201851 GCAGCAGGTAATCACTTATGTGTG 60.202 45.833 8.46 0.59 44.14 3.82
183 184 4.333649 CAGCAGGTAATCACTTATGTGTGG 59.666 45.833 8.46 0.00 44.14 4.17
184 185 4.225042 AGCAGGTAATCACTTATGTGTGGA 59.775 41.667 8.46 0.00 44.14 4.02
185 186 4.941263 GCAGGTAATCACTTATGTGTGGAA 59.059 41.667 8.46 0.00 44.14 3.53
186 187 5.414454 GCAGGTAATCACTTATGTGTGGAAA 59.586 40.000 8.46 0.00 44.14 3.13
187 188 6.072175 GCAGGTAATCACTTATGTGTGGAAAA 60.072 38.462 8.46 0.00 44.14 2.29
188 189 7.362920 GCAGGTAATCACTTATGTGTGGAAAAT 60.363 37.037 8.46 0.00 44.14 1.82
189 190 8.522830 CAGGTAATCACTTATGTGTGGAAAATT 58.477 33.333 8.46 3.34 44.14 1.82
190 191 8.739972 AGGTAATCACTTATGTGTGGAAAATTC 58.260 33.333 8.46 0.00 44.14 2.17
191 192 8.739972 GGTAATCACTTATGTGTGGAAAATTCT 58.260 33.333 8.46 0.00 44.14 2.40
192 193 9.559958 GTAATCACTTATGTGTGGAAAATTCTG 57.440 33.333 8.46 0.00 44.14 3.02
193 194 6.012658 TCACTTATGTGTGGAAAATTCTGC 57.987 37.500 8.46 0.00 44.14 4.26
194 195 5.534278 TCACTTATGTGTGGAAAATTCTGCA 59.466 36.000 8.46 0.00 44.14 4.41
195 196 6.209192 TCACTTATGTGTGGAAAATTCTGCAT 59.791 34.615 8.46 0.00 44.14 3.96
196 197 6.309494 CACTTATGTGTGGAAAATTCTGCATG 59.691 38.462 0.62 0.00 39.24 4.06
197 198 4.877378 ATGTGTGGAAAATTCTGCATGT 57.123 36.364 0.00 0.00 0.00 3.21
198 199 4.669206 TGTGTGGAAAATTCTGCATGTT 57.331 36.364 0.00 0.00 0.00 2.71
199 200 4.370049 TGTGTGGAAAATTCTGCATGTTG 58.630 39.130 0.00 0.00 0.00 3.33
200 201 3.742369 GTGTGGAAAATTCTGCATGTTGG 59.258 43.478 0.00 0.00 0.00 3.77
201 202 2.738314 GTGGAAAATTCTGCATGTTGGC 59.262 45.455 0.00 0.00 0.00 4.52
202 203 2.289569 TGGAAAATTCTGCATGTTGGCC 60.290 45.455 0.00 0.00 0.00 5.36
203 204 2.027837 GGAAAATTCTGCATGTTGGCCT 60.028 45.455 3.32 0.00 0.00 5.19
204 205 2.754946 AAATTCTGCATGTTGGCCTG 57.245 45.000 3.32 0.00 0.00 4.85
205 206 0.899720 AATTCTGCATGTTGGCCTGG 59.100 50.000 3.32 0.00 0.00 4.45
206 207 0.974010 ATTCTGCATGTTGGCCTGGG 60.974 55.000 3.32 0.00 0.00 4.45
207 208 3.766691 CTGCATGTTGGCCTGGGC 61.767 66.667 14.23 14.23 41.06 5.36
245 246 3.790437 CCTGCCTCCGCCACTGAT 61.790 66.667 0.00 0.00 0.00 2.90
246 247 2.434843 CCTGCCTCCGCCACTGATA 61.435 63.158 0.00 0.00 0.00 2.15
247 248 1.522092 CTGCCTCCGCCACTGATAA 59.478 57.895 0.00 0.00 0.00 1.75
248 249 0.811616 CTGCCTCCGCCACTGATAAC 60.812 60.000 0.00 0.00 0.00 1.89
249 250 1.220749 GCCTCCGCCACTGATAACA 59.779 57.895 0.00 0.00 0.00 2.41
250 251 0.179045 GCCTCCGCCACTGATAACAT 60.179 55.000 0.00 0.00 0.00 2.71
251 252 1.871080 CCTCCGCCACTGATAACATC 58.129 55.000 0.00 0.00 0.00 3.06
252 253 1.541233 CCTCCGCCACTGATAACATCC 60.541 57.143 0.00 0.00 0.00 3.51
253 254 1.414181 CTCCGCCACTGATAACATCCT 59.586 52.381 0.00 0.00 0.00 3.24
254 255 1.837439 TCCGCCACTGATAACATCCTT 59.163 47.619 0.00 0.00 0.00 3.36
255 256 2.158957 TCCGCCACTGATAACATCCTTC 60.159 50.000 0.00 0.00 0.00 3.46
256 257 1.860950 CGCCACTGATAACATCCTTCG 59.139 52.381 0.00 0.00 0.00 3.79
294 295 7.360269 GCTCCCAATTTCATAAACACACATTTG 60.360 37.037 0.00 0.00 0.00 2.32
399 400 8.643752 ACAAAAGAAACAAAAACGTGAATAGTG 58.356 29.630 0.00 0.00 0.00 2.74
421 422 7.603297 GTGTAAAAACGACACTACTAACGTA 57.397 36.000 0.00 0.00 43.19 3.57
471 472 9.347240 TCAATTTGCATTTGAAAATTTTAGGGA 57.653 25.926 2.75 0.00 39.59 4.20
480 481 8.415950 TTTGAAAATTTTAGGGACTGCAGATA 57.584 30.769 23.35 4.68 41.52 1.98
482 483 7.175104 TGAAAATTTTAGGGACTGCAGATACT 58.825 34.615 23.35 16.33 41.52 2.12
484 485 8.422577 AAAATTTTAGGGACTGCAGATACTTT 57.577 30.769 23.35 0.00 41.52 2.66
485 486 8.422577 AAATTTTAGGGACTGCAGATACTTTT 57.577 30.769 23.35 8.84 41.52 2.27
491 492 6.352516 AGGGACTGCAGATACTTTTCTTATG 58.647 40.000 23.35 0.00 37.18 1.90
492 493 6.069963 AGGGACTGCAGATACTTTTCTTATGT 60.070 38.462 23.35 0.00 37.18 2.29
530 531 7.595819 AAATCAGACCTTTGTGAACCATTTA 57.404 32.000 0.00 0.00 0.00 1.40
695 706 5.537188 TCTGTGGTGCCAATTTTATGAAAC 58.463 37.500 0.00 0.00 0.00 2.78
703 714 5.519566 TGCCAATTTTATGAAACGATGATGC 59.480 36.000 0.00 0.00 0.00 3.91
734 745 1.002142 GTACCACAAGGCACCGAAAAC 60.002 52.381 0.00 0.00 39.06 2.43
782 793 1.099689 AAAACAGTGGGGACAACACG 58.900 50.000 0.00 0.00 46.06 4.49
852 2134 6.294361 AGCTTTTTCACCAGTAACCTTTTT 57.706 33.333 0.00 0.00 0.00 1.94
880 2162 6.208599 CCACCTCTCTCTCTCTCATATAAACC 59.791 46.154 0.00 0.00 0.00 3.27
964 2246 0.804989 GCTTGCAGCGAAACCATACT 59.195 50.000 0.00 0.00 0.00 2.12
969 2253 1.405526 GCAGCGAAACCATACTCTCCA 60.406 52.381 0.00 0.00 0.00 3.86
976 2260 3.715648 AACCATACTCTCCATCCCTCT 57.284 47.619 0.00 0.00 0.00 3.69
983 2267 1.227089 CTCCATCCCTCTTCGTGCG 60.227 63.158 0.00 0.00 0.00 5.34
1119 2403 2.081212 CACGGACTCTTCGTCGTGC 61.081 63.158 0.00 0.00 43.79 5.34
1157 2441 1.675310 CAGCCAATGCCGTGAAGGA 60.675 57.895 0.00 0.00 45.00 3.36
1200 2484 4.467107 GAGGGAGAGGGAGGGCGT 62.467 72.222 0.00 0.00 0.00 5.68
1222 2506 1.758906 GAGACGGAGGAGGGGAAGG 60.759 68.421 0.00 0.00 0.00 3.46
1241 2537 0.723790 GCGACGACGACGAAGAAGAA 60.724 55.000 22.94 0.00 42.66 2.52
1242 2538 1.240010 CGACGACGACGAAGAAGAAG 58.760 55.000 15.32 0.00 42.66 2.85
1243 2539 1.136419 CGACGACGACGAAGAAGAAGA 60.136 52.381 15.32 0.00 42.66 2.87
2017 3318 7.066645 GGGAGTACGTAGTGATATACATATGCA 59.933 40.741 7.86 0.00 45.73 3.96
2134 3446 7.329717 CCTTGATAGATTTTAGGCGATGTACTC 59.670 40.741 0.00 0.00 0.00 2.59
2136 3448 7.952671 TGATAGATTTTAGGCGATGTACTCTT 58.047 34.615 0.00 0.00 0.00 2.85
2138 3450 6.910536 AGATTTTAGGCGATGTACTCTTTG 57.089 37.500 0.00 0.00 0.00 2.77
2139 3451 6.407202 AGATTTTAGGCGATGTACTCTTTGT 58.593 36.000 0.00 0.00 0.00 2.83
2140 3452 7.553334 AGATTTTAGGCGATGTACTCTTTGTA 58.447 34.615 0.00 0.00 0.00 2.41
2141 3453 8.038944 AGATTTTAGGCGATGTACTCTTTGTAA 58.961 33.333 0.00 0.00 32.25 2.41
2142 3454 8.732746 ATTTTAGGCGATGTACTCTTTGTAAT 57.267 30.769 0.00 0.00 32.25 1.89
2143 3455 7.534085 TTTAGGCGATGTACTCTTTGTAATG 57.466 36.000 0.00 0.00 32.25 1.90
2144 3456 5.086104 AGGCGATGTACTCTTTGTAATGT 57.914 39.130 0.00 0.00 32.25 2.71
2145 3457 4.870426 AGGCGATGTACTCTTTGTAATGTG 59.130 41.667 0.00 0.00 32.25 3.21
2146 3458 4.630069 GGCGATGTACTCTTTGTAATGTGT 59.370 41.667 0.00 0.00 32.25 3.72
2147 3459 5.445939 GGCGATGTACTCTTTGTAATGTGTG 60.446 44.000 0.00 0.00 32.25 3.82
2148 3460 5.445939 GCGATGTACTCTTTGTAATGTGTGG 60.446 44.000 0.00 0.00 32.25 4.17
2149 3461 5.867174 CGATGTACTCTTTGTAATGTGTGGA 59.133 40.000 0.00 0.00 32.25 4.02
2200 3513 4.347583 TGCATTGAGTTTCCCCAGAAAAAT 59.652 37.500 0.00 0.00 43.48 1.82
2261 3575 4.697514 TGAGAAGAAGGAATAGAATGCCG 58.302 43.478 0.00 0.00 0.00 5.69
2300 3614 0.595095 GCCACTGAAGCTGACTTTGG 59.405 55.000 0.00 0.00 35.82 3.28
2307 3621 4.096984 ACTGAAGCTGACTTTGGAAACTTG 59.903 41.667 0.00 0.00 35.82 3.16
2341 3661 4.096984 CCCCTCACTTGTTTATCATCAAGC 59.903 45.833 5.06 0.00 43.05 4.01
2379 3699 2.327343 TGCTTTGCTACTGCCAGCG 61.327 57.895 0.00 0.00 44.88 5.18
2450 3770 9.908152 ATGTTGAACTTTATTAGTTAGTTTGCC 57.092 29.630 0.00 0.00 47.00 4.52
2451 3771 8.904834 TGTTGAACTTTATTAGTTAGTTTGCCA 58.095 29.630 0.00 0.00 47.00 4.92
2574 3900 2.097036 CCTCCATGATCAAGCAAGCAA 58.903 47.619 0.00 0.00 0.00 3.91
2575 3901 2.099263 CCTCCATGATCAAGCAAGCAAG 59.901 50.000 0.00 0.00 0.00 4.01
2576 3902 1.475280 TCCATGATCAAGCAAGCAAGC 59.525 47.619 0.00 0.00 0.00 4.01
2577 3903 1.203758 CCATGATCAAGCAAGCAAGCA 59.796 47.619 0.00 0.00 36.85 3.91
2578 3904 2.530177 CATGATCAAGCAAGCAAGCAG 58.470 47.619 0.00 0.00 36.85 4.24
2639 3975 3.206964 CAGTGCAGCATCTCATCATCTT 58.793 45.455 0.00 0.00 0.00 2.40
2640 3976 3.248841 CAGTGCAGCATCTCATCATCTTC 59.751 47.826 0.00 0.00 0.00 2.87
2641 3977 3.118371 AGTGCAGCATCTCATCATCTTCA 60.118 43.478 0.00 0.00 0.00 3.02
2747 4084 4.575645 GGGAATGAGATTCTTCTTCTGCTG 59.424 45.833 8.29 0.00 39.24 4.41
2748 4085 4.035441 GGAATGAGATTCTTCTTCTGCTGC 59.965 45.833 0.00 0.00 39.24 5.25
2749 4086 3.977134 TGAGATTCTTCTTCTGCTGCT 57.023 42.857 0.00 0.00 30.30 4.24
2750 4087 3.597255 TGAGATTCTTCTTCTGCTGCTG 58.403 45.455 0.00 0.00 30.30 4.41
2751 4088 2.352342 GAGATTCTTCTTCTGCTGCTGC 59.648 50.000 8.89 8.89 33.97 5.25
2752 4089 2.027007 AGATTCTTCTTCTGCTGCTGCT 60.027 45.455 17.00 0.00 40.48 4.24
2797 4134 5.368989 AGATGAGGGAGGTTATTTTAAGCG 58.631 41.667 0.00 0.00 0.00 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.201470 CGGTGCTTATATGTATGATGTCATGTC 60.201 40.741 5.78 0.58 37.15 3.06
65 66 4.790765 AATTAAGTTTTCCTGGCTCTGC 57.209 40.909 0.00 0.00 0.00 4.26
66 67 5.358160 CCCTAATTAAGTTTTCCTGGCTCTG 59.642 44.000 0.00 0.00 0.00 3.35
67 68 5.510430 CCCTAATTAAGTTTTCCTGGCTCT 58.490 41.667 0.00 0.00 0.00 4.09
68 69 4.645136 CCCCTAATTAAGTTTTCCTGGCTC 59.355 45.833 0.00 0.00 0.00 4.70
69 70 4.572007 CCCCCTAATTAAGTTTTCCTGGCT 60.572 45.833 0.00 0.00 0.00 4.75
70 71 3.704566 CCCCCTAATTAAGTTTTCCTGGC 59.295 47.826 0.00 0.00 0.00 4.85
89 90 1.931635 TTTAACATCAGTTGGCCCCC 58.068 50.000 0.00 0.00 38.69 5.40
90 91 3.365472 AGATTTAACATCAGTTGGCCCC 58.635 45.455 0.00 0.00 38.69 5.80
91 92 4.220602 ACAAGATTTAACATCAGTTGGCCC 59.779 41.667 0.00 0.00 38.69 5.80
92 93 5.391312 ACAAGATTTAACATCAGTTGGCC 57.609 39.130 0.00 0.00 38.69 5.36
93 94 5.634859 CCAACAAGATTTAACATCAGTTGGC 59.365 40.000 22.85 0.00 43.04 4.52
94 95 6.015519 TCCCAACAAGATTTAACATCAGTTGG 60.016 38.462 24.70 24.70 45.52 3.77
95 96 6.980593 TCCCAACAAGATTTAACATCAGTTG 58.019 36.000 17.19 17.19 38.69 3.16
96 97 6.209391 CCTCCCAACAAGATTTAACATCAGTT 59.791 38.462 0.00 0.00 41.74 3.16
97 98 5.711976 CCTCCCAACAAGATTTAACATCAGT 59.288 40.000 0.00 0.00 0.00 3.41
98 99 5.126061 CCCTCCCAACAAGATTTAACATCAG 59.874 44.000 0.00 0.00 0.00 2.90
99 100 5.016173 CCCTCCCAACAAGATTTAACATCA 58.984 41.667 0.00 0.00 0.00 3.07
100 101 4.142160 GCCCTCCCAACAAGATTTAACATC 60.142 45.833 0.00 0.00 0.00 3.06
101 102 3.769300 GCCCTCCCAACAAGATTTAACAT 59.231 43.478 0.00 0.00 0.00 2.71
102 103 3.161866 GCCCTCCCAACAAGATTTAACA 58.838 45.455 0.00 0.00 0.00 2.41
103 104 2.496070 GGCCCTCCCAACAAGATTTAAC 59.504 50.000 0.00 0.00 0.00 2.01
104 105 2.110899 TGGCCCTCCCAACAAGATTTAA 59.889 45.455 0.00 0.00 41.82 1.52
105 106 1.713647 TGGCCCTCCCAACAAGATTTA 59.286 47.619 0.00 0.00 41.82 1.40
106 107 0.486879 TGGCCCTCCCAACAAGATTT 59.513 50.000 0.00 0.00 41.82 2.17
107 108 2.172900 TGGCCCTCCCAACAAGATT 58.827 52.632 0.00 0.00 41.82 2.40
108 109 3.936408 TGGCCCTCCCAACAAGAT 58.064 55.556 0.00 0.00 41.82 2.40
122 123 1.735571 CATGATTTTGCTGGCTTTGGC 59.264 47.619 0.00 0.00 37.82 4.52
123 124 3.322211 TCATGATTTTGCTGGCTTTGG 57.678 42.857 0.00 0.00 0.00 3.28
124 125 6.511121 GCATTATCATGATTTTGCTGGCTTTG 60.511 38.462 24.44 7.09 31.07 2.77
125 126 5.526111 GCATTATCATGATTTTGCTGGCTTT 59.474 36.000 24.44 0.00 31.07 3.51
126 127 5.054477 GCATTATCATGATTTTGCTGGCTT 58.946 37.500 24.44 0.06 31.07 4.35
127 128 4.100344 TGCATTATCATGATTTTGCTGGCT 59.900 37.500 28.34 4.31 32.27 4.75
128 129 4.210537 GTGCATTATCATGATTTTGCTGGC 59.789 41.667 28.34 19.77 32.27 4.85
129 130 5.353111 TGTGCATTATCATGATTTTGCTGG 58.647 37.500 28.34 11.16 32.27 4.85
130 131 6.270064 TCTGTGCATTATCATGATTTTGCTG 58.730 36.000 28.34 21.54 32.27 4.41
131 132 6.459670 TCTGTGCATTATCATGATTTTGCT 57.540 33.333 28.34 6.76 32.27 3.91
132 133 7.709269 ATTCTGTGCATTATCATGATTTTGC 57.291 32.000 24.74 24.74 31.07 3.68
134 135 9.472361 GCTAATTCTGTGCATTATCATGATTTT 57.528 29.630 14.65 0.00 31.07 1.82
135 136 8.635328 TGCTAATTCTGTGCATTATCATGATTT 58.365 29.630 14.65 0.00 31.07 2.17
136 137 8.173542 TGCTAATTCTGTGCATTATCATGATT 57.826 30.769 14.65 0.00 31.07 2.57
137 138 7.575155 GCTGCTAATTCTGTGCATTATCATGAT 60.575 37.037 13.81 13.81 36.07 2.45
138 139 6.293790 GCTGCTAATTCTGTGCATTATCATGA 60.294 38.462 0.00 0.00 36.07 3.07
139 140 5.856986 GCTGCTAATTCTGTGCATTATCATG 59.143 40.000 0.00 0.00 36.07 3.07
140 141 5.533528 TGCTGCTAATTCTGTGCATTATCAT 59.466 36.000 0.00 0.00 36.07 2.45
141 142 4.883006 TGCTGCTAATTCTGTGCATTATCA 59.117 37.500 0.00 0.00 36.07 2.15
142 143 5.428496 TGCTGCTAATTCTGTGCATTATC 57.572 39.130 0.00 0.00 36.07 1.75
143 144 4.277672 CCTGCTGCTAATTCTGTGCATTAT 59.722 41.667 0.00 0.00 36.07 1.28
144 145 3.628942 CCTGCTGCTAATTCTGTGCATTA 59.371 43.478 0.00 0.00 36.07 1.90
145 146 2.426024 CCTGCTGCTAATTCTGTGCATT 59.574 45.455 0.00 0.00 36.07 3.56
146 147 2.022195 CCTGCTGCTAATTCTGTGCAT 58.978 47.619 0.00 0.00 36.07 3.96
147 148 1.271543 ACCTGCTGCTAATTCTGTGCA 60.272 47.619 0.00 0.00 35.30 4.57
148 149 1.457346 ACCTGCTGCTAATTCTGTGC 58.543 50.000 0.00 0.00 0.00 4.57
149 150 4.877823 TGATTACCTGCTGCTAATTCTGTG 59.122 41.667 0.00 0.00 0.00 3.66
150 151 4.878397 GTGATTACCTGCTGCTAATTCTGT 59.122 41.667 0.00 0.00 0.00 3.41
151 152 5.121811 AGTGATTACCTGCTGCTAATTCTG 58.878 41.667 0.00 0.00 0.00 3.02
152 153 5.365021 AGTGATTACCTGCTGCTAATTCT 57.635 39.130 0.00 0.00 0.00 2.40
153 154 7.227512 ACATAAGTGATTACCTGCTGCTAATTC 59.772 37.037 0.00 0.00 0.00 2.17
154 155 7.056635 ACATAAGTGATTACCTGCTGCTAATT 58.943 34.615 0.00 0.00 0.00 1.40
155 156 6.595682 ACATAAGTGATTACCTGCTGCTAAT 58.404 36.000 0.00 0.00 0.00 1.73
156 157 5.989477 ACATAAGTGATTACCTGCTGCTAA 58.011 37.500 0.00 0.00 0.00 3.09
157 158 5.614324 ACATAAGTGATTACCTGCTGCTA 57.386 39.130 0.00 0.00 0.00 3.49
158 159 4.494091 ACATAAGTGATTACCTGCTGCT 57.506 40.909 0.00 0.00 0.00 4.24
172 173 6.015180 ACATGCAGAATTTTCCACACATAAGT 60.015 34.615 0.00 0.00 0.00 2.24
173 174 6.392354 ACATGCAGAATTTTCCACACATAAG 58.608 36.000 0.00 0.00 0.00 1.73
174 175 6.343716 ACATGCAGAATTTTCCACACATAA 57.656 33.333 0.00 0.00 0.00 1.90
175 176 5.981088 ACATGCAGAATTTTCCACACATA 57.019 34.783 0.00 0.00 0.00 2.29
176 177 4.877378 ACATGCAGAATTTTCCACACAT 57.123 36.364 0.00 0.00 0.00 3.21
177 178 4.370049 CAACATGCAGAATTTTCCACACA 58.630 39.130 0.00 0.00 0.00 3.72
178 179 3.742369 CCAACATGCAGAATTTTCCACAC 59.258 43.478 0.00 0.00 0.00 3.82
179 180 3.803021 GCCAACATGCAGAATTTTCCACA 60.803 43.478 0.00 0.00 0.00 4.17
180 181 2.738314 GCCAACATGCAGAATTTTCCAC 59.262 45.455 0.00 0.00 0.00 4.02
181 182 2.289569 GGCCAACATGCAGAATTTTCCA 60.290 45.455 0.00 0.00 0.00 3.53
182 183 2.027837 AGGCCAACATGCAGAATTTTCC 60.028 45.455 5.01 0.00 0.00 3.13
183 184 2.997986 CAGGCCAACATGCAGAATTTTC 59.002 45.455 5.01 0.00 0.00 2.29
184 185 2.289819 CCAGGCCAACATGCAGAATTTT 60.290 45.455 5.01 0.00 0.00 1.82
185 186 1.276989 CCAGGCCAACATGCAGAATTT 59.723 47.619 5.01 0.00 0.00 1.82
186 187 0.899720 CCAGGCCAACATGCAGAATT 59.100 50.000 5.01 0.00 0.00 2.17
187 188 0.974010 CCCAGGCCAACATGCAGAAT 60.974 55.000 5.01 0.00 0.00 2.40
188 189 1.607178 CCCAGGCCAACATGCAGAA 60.607 57.895 5.01 0.00 0.00 3.02
189 190 2.036098 CCCAGGCCAACATGCAGA 59.964 61.111 5.01 0.00 0.00 4.26
190 191 3.766691 GCCCAGGCCAACATGCAG 61.767 66.667 5.01 0.00 34.56 4.41
232 233 1.541233 GGATGTTATCAGTGGCGGAGG 60.541 57.143 0.00 0.00 0.00 4.30
233 234 1.414181 AGGATGTTATCAGTGGCGGAG 59.586 52.381 0.00 0.00 0.00 4.63
234 235 1.496060 AGGATGTTATCAGTGGCGGA 58.504 50.000 0.00 0.00 0.00 5.54
235 236 2.213499 GAAGGATGTTATCAGTGGCGG 58.787 52.381 0.00 0.00 0.00 6.13
236 237 1.860950 CGAAGGATGTTATCAGTGGCG 59.139 52.381 0.00 0.00 0.00 5.69
237 238 1.599542 GCGAAGGATGTTATCAGTGGC 59.400 52.381 0.00 0.00 0.00 5.01
238 239 2.905075 TGCGAAGGATGTTATCAGTGG 58.095 47.619 0.00 0.00 0.00 4.00
249 250 1.880271 CATGAGAGCATGCGAAGGAT 58.120 50.000 13.01 0.00 44.76 3.24
250 251 3.374506 CATGAGAGCATGCGAAGGA 57.625 52.632 13.01 0.00 44.76 3.36
399 400 8.215899 ACATACGTTAGTAGTGTCGTTTTTAC 57.784 34.615 0.00 0.00 36.12 2.01
456 457 6.916360 ATCTGCAGTCCCTAAAATTTTCAA 57.084 33.333 14.67 0.00 0.00 2.69
459 460 8.422577 AAAGTATCTGCAGTCCCTAAAATTTT 57.577 30.769 14.67 8.75 0.00 1.82
471 472 9.672673 AATGTACATAAGAAAAGTATCTGCAGT 57.327 29.630 14.67 3.75 0.00 4.40
504 505 5.261209 TGGTTCACAAAGGTCTGATTTTG 57.739 39.130 12.94 12.94 39.55 2.44
508 509 7.595819 TTTAAATGGTTCACAAAGGTCTGAT 57.404 32.000 0.00 0.00 0.00 2.90
509 510 7.069331 ACATTTAAATGGTTCACAAAGGTCTGA 59.931 33.333 27.43 0.00 40.70 3.27
510 511 7.169645 CACATTTAAATGGTTCACAAAGGTCTG 59.830 37.037 27.43 10.95 40.70 3.51
511 512 7.209475 CACATTTAAATGGTTCACAAAGGTCT 58.791 34.615 27.43 3.28 40.70 3.85
512 513 6.423604 CCACATTTAAATGGTTCACAAAGGTC 59.576 38.462 27.43 0.00 40.70 3.85
513 514 6.287525 CCACATTTAAATGGTTCACAAAGGT 58.712 36.000 27.43 3.86 40.70 3.50
514 515 5.700373 CCCACATTTAAATGGTTCACAAAGG 59.300 40.000 27.43 15.27 40.70 3.11
515 516 6.287525 ACCCACATTTAAATGGTTCACAAAG 58.712 36.000 27.43 10.94 40.70 2.77
554 555 7.042051 GCTCCTAATTTTGAAAACCCACTTTTC 60.042 37.037 0.00 0.00 45.68 2.29
558 559 4.898861 TGCTCCTAATTTTGAAAACCCACT 59.101 37.500 0.00 0.00 0.00 4.00
695 706 6.254373 GTGGTACTACATGATATGCATCATCG 59.746 42.308 0.19 0.68 46.88 3.84
703 714 5.466728 GTGCCTTGTGGTACTACATGATATG 59.533 44.000 21.95 9.74 44.16 1.78
734 745 1.137479 GGGCACATGTTCATCATTGGG 59.863 52.381 0.00 0.00 34.09 4.12
852 2134 1.996291 TGAGAGAGAGAGAGGTGGGAA 59.004 52.381 0.00 0.00 0.00 3.97
880 2162 0.462047 GTTCGTATCTGCAGTGGGGG 60.462 60.000 14.67 1.00 0.00 5.40
954 2236 3.970640 AGAGGGATGGAGAGTATGGTTTC 59.029 47.826 0.00 0.00 0.00 2.78
956 2238 3.715648 AGAGGGATGGAGAGTATGGTT 57.284 47.619 0.00 0.00 0.00 3.67
957 2239 3.582164 GAAGAGGGATGGAGAGTATGGT 58.418 50.000 0.00 0.00 0.00 3.55
958 2240 2.560542 CGAAGAGGGATGGAGAGTATGG 59.439 54.545 0.00 0.00 0.00 2.74
959 2241 3.005261 CACGAAGAGGGATGGAGAGTATG 59.995 52.174 0.00 0.00 0.00 2.39
961 2243 2.656002 CACGAAGAGGGATGGAGAGTA 58.344 52.381 0.00 0.00 0.00 2.59
962 2244 1.479709 CACGAAGAGGGATGGAGAGT 58.520 55.000 0.00 0.00 0.00 3.24
964 2246 1.667154 CGCACGAAGAGGGATGGAGA 61.667 60.000 0.00 0.00 31.99 3.71
969 2253 4.162690 GGGCGCACGAAGAGGGAT 62.163 66.667 10.83 0.00 31.99 3.85
1140 2424 1.377725 CTCCTTCACGGCATTGGCT 60.378 57.895 8.71 0.00 40.87 4.75
1200 2484 2.684104 CCCTCCTCCGTCTCCTCA 59.316 66.667 0.00 0.00 0.00 3.86
1222 2506 0.723790 TTCTTCTTCGTCGTCGTCGC 60.724 55.000 7.01 0.00 38.33 5.19
1488 2784 4.643387 GCCTGCACGTCCTTGGGT 62.643 66.667 0.00 0.00 0.00 4.51
1549 2845 0.683179 TCCGACTGATCCGTGGACAT 60.683 55.000 0.83 0.00 0.00 3.06
1837 3136 4.580580 TCATCTAGTCTTCGCAAGCATCTA 59.419 41.667 0.00 0.00 37.18 1.98
1885 3184 5.046304 AGGCAAAGAAGAGATTACACTAGCA 60.046 40.000 0.00 0.00 0.00 3.49
2092 3399 4.553330 TCAAGGTCAAACCACTAGGATC 57.447 45.455 0.00 0.00 41.95 3.36
2134 3446 5.965334 GCATAACGATCCACACATTACAAAG 59.035 40.000 0.00 0.00 0.00 2.77
2136 3448 5.182487 AGCATAACGATCCACACATTACAA 58.818 37.500 0.00 0.00 0.00 2.41
2138 3450 5.501715 CAAGCATAACGATCCACACATTAC 58.498 41.667 0.00 0.00 0.00 1.89
2139 3451 4.574421 CCAAGCATAACGATCCACACATTA 59.426 41.667 0.00 0.00 0.00 1.90
2140 3452 3.378112 CCAAGCATAACGATCCACACATT 59.622 43.478 0.00 0.00 0.00 2.71
2141 3453 2.945008 CCAAGCATAACGATCCACACAT 59.055 45.455 0.00 0.00 0.00 3.21
2142 3454 2.027653 TCCAAGCATAACGATCCACACA 60.028 45.455 0.00 0.00 0.00 3.72
2143 3455 2.627945 TCCAAGCATAACGATCCACAC 58.372 47.619 0.00 0.00 0.00 3.82
2144 3456 3.342377 TTCCAAGCATAACGATCCACA 57.658 42.857 0.00 0.00 0.00 4.17
2145 3457 5.057149 AGTATTCCAAGCATAACGATCCAC 58.943 41.667 0.00 0.00 0.00 4.02
2146 3458 5.070446 AGAGTATTCCAAGCATAACGATCCA 59.930 40.000 0.00 0.00 0.00 3.41
2147 3459 5.542779 AGAGTATTCCAAGCATAACGATCC 58.457 41.667 0.00 0.00 0.00 3.36
2148 3460 7.011482 ACAAAGAGTATTCCAAGCATAACGATC 59.989 37.037 0.00 0.00 0.00 3.69
2149 3461 6.823689 ACAAAGAGTATTCCAAGCATAACGAT 59.176 34.615 0.00 0.00 0.00 3.73
2220 3534 2.367894 TCATCTCAGTCTCCATGGCATC 59.632 50.000 6.96 0.00 0.00 3.91
2261 3575 3.183754 GCCTCTTAACTTCGAGCTTCTC 58.816 50.000 0.00 0.00 0.00 2.87
2300 3614 5.117406 AGGGGTGGAATAGATCAAGTTTC 57.883 43.478 0.00 0.00 0.00 2.78
2307 3621 3.456277 ACAAGTGAGGGGTGGAATAGATC 59.544 47.826 0.00 0.00 0.00 2.75
2379 3699 9.577110 TGAATGCTGATAAAGAAACATGAAATC 57.423 29.630 0.00 0.00 0.00 2.17
2443 3763 1.756538 CCCAACTTCACTTGGCAAACT 59.243 47.619 0.00 0.00 39.67 2.66
2447 3767 0.843309 TCTCCCAACTTCACTTGGCA 59.157 50.000 0.00 0.00 39.67 4.92
2448 3768 1.882623 CTTCTCCCAACTTCACTTGGC 59.117 52.381 0.00 0.00 39.67 4.52
2449 3769 3.492102 TCTTCTCCCAACTTCACTTGG 57.508 47.619 0.00 0.00 40.57 3.61
2450 3770 3.251972 GCTTCTTCTCCCAACTTCACTTG 59.748 47.826 0.00 0.00 0.00 3.16
2451 3771 3.137360 AGCTTCTTCTCCCAACTTCACTT 59.863 43.478 0.00 0.00 0.00 3.16
2532 3858 3.821033 GAGACCAACACTAGCCAAACAAT 59.179 43.478 0.00 0.00 0.00 2.71
2574 3900 2.048419 TTGTCTGCACTGCCTCTGCT 62.048 55.000 0.00 0.00 38.71 4.24
2575 3901 1.168407 TTTGTCTGCACTGCCTCTGC 61.168 55.000 0.00 0.00 38.26 4.26
2576 3902 1.266175 CTTTTGTCTGCACTGCCTCTG 59.734 52.381 0.00 0.00 0.00 3.35
2577 3903 1.602311 CTTTTGTCTGCACTGCCTCT 58.398 50.000 0.00 0.00 0.00 3.69
2578 3904 0.595095 CCTTTTGTCTGCACTGCCTC 59.405 55.000 0.00 0.00 0.00 4.70
2639 3975 4.081198 GCCAGAGGAAGAAGAAGAAGATGA 60.081 45.833 0.00 0.00 0.00 2.92
2640 3976 4.080975 AGCCAGAGGAAGAAGAAGAAGATG 60.081 45.833 0.00 0.00 0.00 2.90
2641 3977 4.103342 AGCCAGAGGAAGAAGAAGAAGAT 58.897 43.478 0.00 0.00 0.00 2.40
2747 4084 1.683385 ACCACAAGGAAAAGAAGCAGC 59.317 47.619 0.00 0.00 38.69 5.25
2748 4085 4.389374 TCTACCACAAGGAAAAGAAGCAG 58.611 43.478 0.00 0.00 38.69 4.24
2749 4086 4.102524 TCTCTACCACAAGGAAAAGAAGCA 59.897 41.667 0.00 0.00 38.69 3.91
2750 4087 4.642429 TCTCTACCACAAGGAAAAGAAGC 58.358 43.478 0.00 0.00 38.69 3.86
2751 4088 6.015010 TCTCTCTCTACCACAAGGAAAAGAAG 60.015 42.308 0.00 0.00 38.69 2.85
2752 4089 5.839063 TCTCTCTCTACCACAAGGAAAAGAA 59.161 40.000 0.00 0.00 38.69 2.52
2797 4134 1.747355 CTCACTGGAAATGATGGCCAC 59.253 52.381 8.16 2.36 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.