Multiple sequence alignment - TraesCS1D01G221100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G221100 chr1D 100.000 4446 0 0 1 4446 308589657 308585212 0.000000e+00 8211
1 TraesCS1D01G221100 chr1A 93.893 3193 149 24 1270 4446 388162852 388159690 0.000000e+00 4774
2 TraesCS1D01G221100 chr1A 97.826 690 11 2 1 686 388164266 388163577 0.000000e+00 1188
3 TraesCS1D01G221100 chr1A 93.168 483 27 4 786 1263 388163400 388162919 0.000000e+00 704
4 TraesCS1D01G221100 chr1A 87.302 126 5 3 671 786 388163550 388163426 2.790000e-27 134
5 TraesCS1D01G221100 chr1B 95.673 2126 76 10 2325 4446 418674267 418672154 0.000000e+00 3402
6 TraesCS1D01G221100 chr1B 91.046 2390 96 37 1 2332 418678332 418676003 0.000000e+00 3120
7 TraesCS1D01G221100 chr4D 86.620 142 16 2 1001 1142 509663214 509663352 2.140000e-33 154
8 TraesCS1D01G221100 chr5A 84.722 144 16 3 1001 1141 698507356 698507496 6.000000e-29 139
9 TraesCS1D01G221100 chr4B 89.623 106 10 1 1041 1145 657176371 657176266 2.790000e-27 134


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G221100 chr1D 308585212 308589657 4445 True 8211 8211 100.00000 1 4446 1 chr1D.!!$R1 4445
1 TraesCS1D01G221100 chr1A 388159690 388164266 4576 True 1700 4774 93.04725 1 4446 4 chr1A.!!$R1 4445
2 TraesCS1D01G221100 chr1B 418672154 418678332 6178 True 3261 3402 93.35950 1 4446 2 chr1B.!!$R1 4445

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.106708 GCAGAGAAGGTGTGGTGTGA 59.893 55.000 0.00 0.0 0.00 3.58 F
978 1068 0.539051 CTGCCCTTGGACTAGGAGTG 59.461 60.000 1.25 0.0 37.50 3.51 F
2060 2243 1.003580 GGATGTGTGGAGCTGGAGAAA 59.996 52.381 0.00 0.0 0.00 2.52 F
2737 4663 0.036875 GGAAGTACAGGCCACAGCTT 59.963 55.000 5.01 3.7 39.73 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1712 1891 0.534203 GCCAAACCTCCTCGTGACAA 60.534 55.000 0.00 0.00 0.00 3.18 R
2401 4327 0.177373 TGCTGATGCTGAGCTCGAAT 59.823 50.000 9.64 3.93 40.48 3.34 R
3248 5174 0.583438 CATATCCACGCGGCAAAGAG 59.417 55.000 12.47 0.00 0.00 2.85 R
3725 5663 1.535462 CAAGGGCCTGTCACTTTTACG 59.465 52.381 6.92 0.00 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.140303 TCATGAAAATTGCCTAGCATTCTC 57.860 37.500 0.00 0.00 38.76 2.87
56 57 3.308438 AGCATTCTCACATTTTGGTGC 57.692 42.857 0.00 0.00 38.66 5.01
182 183 0.106708 GCAGAGAAGGTGTGGTGTGA 59.893 55.000 0.00 0.00 0.00 3.58
185 186 0.603975 GAGAAGGTGTGGTGTGAGCC 60.604 60.000 0.00 0.00 0.00 4.70
762 822 3.822735 CTCATATCATTTCCACCCGCAAT 59.177 43.478 0.00 0.00 0.00 3.56
763 823 4.214310 TCATATCATTTCCACCCGCAATT 58.786 39.130 0.00 0.00 0.00 2.32
768 828 5.215252 TCATTTCCACCCGCAATTAAAAA 57.785 34.783 0.00 0.00 0.00 1.94
774 834 5.368989 TCCACCCGCAATTAAAAACAAAAT 58.631 33.333 0.00 0.00 0.00 1.82
868 958 2.426261 GACGTGCGGCCGTTTTTC 60.426 61.111 28.70 14.71 41.98 2.29
914 1004 4.475944 CAATCCATCCGCCGATAAATTTC 58.524 43.478 0.00 0.00 0.00 2.17
941 1031 2.387757 CTCTTTCTCTCCCTCCCTCTG 58.612 57.143 0.00 0.00 0.00 3.35
978 1068 0.539051 CTGCCCTTGGACTAGGAGTG 59.461 60.000 1.25 0.00 37.50 3.51
1016 1106 2.426023 GATGGCGATAGGGGCGTT 59.574 61.111 0.00 0.00 34.76 4.84
1157 1247 2.900546 CCGGTATGCCTATCTTCTTCCT 59.099 50.000 0.00 0.00 0.00 3.36
1216 1317 6.106673 TCAACGGAAAGGAATATGAGAACTC 58.893 40.000 0.00 0.00 0.00 3.01
1226 1327 9.660180 AAGGAATATGAGAACTCAAAGTTAGAC 57.340 33.333 8.59 0.00 43.58 2.59
1228 1329 7.760340 GGAATATGAGAACTCAAAGTTAGACGT 59.240 37.037 8.59 0.00 43.58 4.34
1242 1343 1.420430 AGACGTTGGACTTGGAAGGA 58.580 50.000 0.00 0.00 0.00 3.36
1251 1352 6.806739 CGTTGGACTTGGAAGGAATTAAAATC 59.193 38.462 0.00 0.00 0.00 2.17
1273 1407 2.754552 GCATTCATGGCTTACTTGTGGA 59.245 45.455 0.00 0.00 0.00 4.02
1275 1409 4.264253 CATTCATGGCTTACTTGTGGAGA 58.736 43.478 0.00 0.00 0.00 3.71
1319 1480 2.158623 TGGGACACAAAAGCTGATGAGT 60.159 45.455 6.04 4.17 0.00 3.41
1372 1533 5.994250 TCTTCAGGTCAAAATGATCTAGGG 58.006 41.667 0.00 0.00 35.21 3.53
1401 1562 7.999545 AGGCCTTTTAGAGGGATTATAGAAAAC 59.000 37.037 0.00 0.00 46.40 2.43
1402 1563 7.999545 GGCCTTTTAGAGGGATTATAGAAAACT 59.000 37.037 0.00 0.00 46.40 2.66
1460 1621 1.029408 TTGGGCAATGGATTCGGTCG 61.029 55.000 0.00 0.00 0.00 4.79
1540 1719 3.058450 TGCATGCGGTTCTGAATTTTTG 58.942 40.909 14.09 0.00 0.00 2.44
1692 1871 1.069765 CTACATCGCCGGCCTCATT 59.930 57.895 23.46 3.95 0.00 2.57
1704 1883 1.868997 CCTCATTGCGACGCTGTTT 59.131 52.632 22.08 0.00 0.00 2.83
1934 2114 6.313905 GTGTACATGTGGTTCAGGAGATTAAG 59.686 42.308 9.11 0.00 0.00 1.85
2011 2194 9.567776 GATAATATAGAGAGATCATCCTTCCGA 57.432 37.037 0.00 0.00 0.00 4.55
2060 2243 1.003580 GGATGTGTGGAGCTGGAGAAA 59.996 52.381 0.00 0.00 0.00 2.52
2073 2256 3.535561 CTGGAGAAACAGTGACACAAGT 58.464 45.455 8.59 3.04 33.81 3.16
2075 2258 3.938963 TGGAGAAACAGTGACACAAGTTC 59.061 43.478 14.35 10.56 0.00 3.01
2213 2397 2.036958 TCATTGCATTGACTACCCGG 57.963 50.000 7.19 0.00 0.00 5.73
2218 2402 1.903860 TGCATTGACTACCCGGTAAGT 59.096 47.619 0.00 2.60 0.00 2.24
2252 2436 3.021269 AGCAAGTGCATGTGATGTTTG 57.979 42.857 6.00 0.00 45.16 2.93
2401 4327 1.643868 GCGGTGCGATCAACAATGGA 61.644 55.000 0.00 0.00 0.00 3.41
2455 4381 4.085357 TGCAAACATCCTCAACTACTGT 57.915 40.909 0.00 0.00 0.00 3.55
2468 4394 3.093717 ACTACTGTGTGGTGAAACTCG 57.906 47.619 0.00 0.00 36.74 4.18
2668 4594 0.615331 TGGATGACTTGGTCTCTGCC 59.385 55.000 0.00 0.00 33.15 4.85
2704 4630 2.434428 GCAGCCAGATATCCATTCAGG 58.566 52.381 0.00 0.00 39.47 3.86
2737 4663 0.036875 GGAAGTACAGGCCACAGCTT 59.963 55.000 5.01 3.70 39.73 3.74
2750 4676 1.677966 CAGCTTGCCATGGTGCTCT 60.678 57.895 20.63 8.87 33.03 4.09
2839 4765 0.539051 CAATCGGCCTCAAGGAGAGT 59.461 55.000 0.00 0.00 43.12 3.24
2854 4780 2.681778 AGTGCCTCCCTCCTGTCG 60.682 66.667 0.00 0.00 0.00 4.35
2894 4820 1.202020 GCGCGACATTTGCTAACATCA 60.202 47.619 12.10 0.00 0.00 3.07
2920 4846 0.179067 TGTTGGTGGTCGACAGGTTC 60.179 55.000 18.91 0.00 34.96 3.62
2999 4925 2.971413 GCGCCATCCTAGCTGCAG 60.971 66.667 10.11 10.11 32.54 4.41
3073 4999 2.010286 CATGTGCGTGTTTGTGGCG 61.010 57.895 0.00 0.00 0.00 5.69
3265 5191 1.153449 CCTCTTTGCCGCGTGGATA 60.153 57.895 21.76 3.31 37.49 2.59
3304 5230 2.501723 GGTCTATCTGTTCCTGCCAGAA 59.498 50.000 0.00 0.00 41.93 3.02
3347 5273 1.692042 ATGGAGCAGGTCTGGAGGG 60.692 63.158 0.00 0.00 0.00 4.30
3384 5310 2.310052 AGAAGATTGTTGGGGAGGAAGG 59.690 50.000 0.00 0.00 0.00 3.46
3400 5326 4.699994 AGGAAGGTGATAAGGAAGAGGAA 58.300 43.478 0.00 0.00 0.00 3.36
3420 5354 4.584743 GGAAGAAAAGGAGAGGCAAGAAAA 59.415 41.667 0.00 0.00 0.00 2.29
3428 5362 4.457257 AGGAGAGGCAAGAAAAGAAAATCG 59.543 41.667 0.00 0.00 0.00 3.34
3436 5370 3.399330 AGAAAAGAAAATCGACTCGCCA 58.601 40.909 0.00 0.00 0.00 5.69
3487 5422 2.479566 TTCCATCAGACTGCAAGGAC 57.520 50.000 9.11 0.00 39.30 3.85
3494 5429 2.880268 TCAGACTGCAAGGACAAACATG 59.120 45.455 0.00 0.00 39.30 3.21
3677 5615 2.279935 AGTGAACCGTCTCTCAGAGT 57.720 50.000 0.36 0.00 0.00 3.24
3678 5616 2.156098 AGTGAACCGTCTCTCAGAGTC 58.844 52.381 0.36 0.00 0.00 3.36
3679 5617 1.880675 GTGAACCGTCTCTCAGAGTCA 59.119 52.381 0.36 0.00 0.00 3.41
3680 5618 2.095466 GTGAACCGTCTCTCAGAGTCAG 60.095 54.545 0.36 0.00 0.00 3.51
3681 5619 2.224548 TGAACCGTCTCTCAGAGTCAGA 60.225 50.000 0.36 0.00 0.00 3.27
3682 5620 2.107950 ACCGTCTCTCAGAGTCAGAG 57.892 55.000 6.21 6.21 39.11 3.35
3683 5621 1.339631 ACCGTCTCTCAGAGTCAGAGG 60.340 57.143 12.17 2.26 38.39 3.69
3684 5622 1.065782 CCGTCTCTCAGAGTCAGAGGA 60.066 57.143 12.17 6.25 38.39 3.71
3725 5663 5.702865 TGCATCATGACTTTTGCTAAAGAC 58.297 37.500 24.36 18.94 42.78 3.01
3740 5678 4.377124 GCTAAAGACGTAAAAGTGACAGGC 60.377 45.833 0.00 0.00 0.00 4.85
3779 5717 2.330254 CACTCGTGCACAACCCAAT 58.670 52.632 18.64 0.00 0.00 3.16
4074 6013 5.990120 ATTTAGCATGGCTTCTTTCAACT 57.010 34.783 0.00 0.00 40.44 3.16
4087 6026 9.167311 GGCTTCTTTCAACTATAAGATCTTGAA 57.833 33.333 18.47 9.50 32.16 2.69
4095 6038 9.809096 TCAACTATAAGATCTTGAATGAGTGAC 57.191 33.333 18.47 0.00 0.00 3.67
4096 6039 9.814899 CAACTATAAGATCTTGAATGAGTGACT 57.185 33.333 18.47 0.00 0.00 3.41
4097 6040 9.814899 AACTATAAGATCTTGAATGAGTGACTG 57.185 33.333 18.47 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 7.494625 AGAATGCTAGGCAATTTTCATGATTTG 59.505 33.333 0.00 2.82 43.62 2.32
44 45 2.873472 ACAATGCAAGCACCAAAATGTG 59.127 40.909 0.00 0.00 39.29 3.21
56 57 8.164153 GCTTCATTACAATGTTAACAATGCAAG 58.836 33.333 21.01 17.70 37.65 4.01
182 183 2.060980 CGGGAGCAGAGGTAAGGCT 61.061 63.158 0.00 0.00 41.35 4.58
185 186 1.395826 CCTCCGGGAGCAGAGGTAAG 61.396 65.000 18.91 0.00 44.01 2.34
240 241 4.790861 GTCGCCGAACCCTCCGAC 62.791 72.222 0.00 0.00 42.39 4.79
762 822 9.500785 GATTGGATTCTGGGATTTTGTTTTTAA 57.499 29.630 0.00 0.00 0.00 1.52
763 823 8.100164 GGATTGGATTCTGGGATTTTGTTTTTA 58.900 33.333 0.00 0.00 0.00 1.52
768 828 4.467438 GTGGATTGGATTCTGGGATTTTGT 59.533 41.667 0.00 0.00 0.00 2.83
774 834 1.565759 CCTGTGGATTGGATTCTGGGA 59.434 52.381 0.00 0.00 0.00 4.37
885 975 1.815421 GCGGATGGATTGCTGACGT 60.815 57.895 0.00 0.00 0.00 4.34
914 1004 5.016245 AGGGAGGGAGAGAAAGAGGATATAG 59.984 48.000 0.00 0.00 0.00 1.31
941 1031 4.338539 AGTGTCGTGTCGCGGGAC 62.339 66.667 24.41 24.41 43.71 4.46
978 1068 4.120755 CCCTGCCCTTGCTCTCCC 62.121 72.222 0.00 0.00 38.71 4.30
1142 1232 6.380079 AGAAAGAAAGGAAGAAGATAGGCA 57.620 37.500 0.00 0.00 0.00 4.75
1183 1283 1.604604 CTTTCCGTTGAGCCCAAGAA 58.395 50.000 0.00 0.00 32.06 2.52
1216 1317 4.124238 TCCAAGTCCAACGTCTAACTTTG 58.876 43.478 6.66 4.79 29.78 2.77
1226 1327 5.699097 TTTAATTCCTTCCAAGTCCAACG 57.301 39.130 0.00 0.00 0.00 4.10
1228 1329 6.571537 GCGATTTTAATTCCTTCCAAGTCCAA 60.572 38.462 0.00 0.00 0.00 3.53
1242 1343 7.491682 AGTAAGCCATGAATGCGATTTTAATT 58.508 30.769 0.00 0.00 0.00 1.40
1251 1352 2.478370 CCACAAGTAAGCCATGAATGCG 60.478 50.000 0.00 0.00 0.00 4.73
1273 1407 9.352191 CAATAATGGAAGAGAAAATCTCCATCT 57.648 33.333 3.05 0.00 44.42 2.90
1319 1480 1.140312 AGAGGAAAGCACCCTGAACA 58.860 50.000 0.00 0.00 33.36 3.18
1372 1533 3.866703 AATCCCTCTAAAAGGCCTAGC 57.133 47.619 5.16 0.00 44.71 3.42
1419 1580 4.717233 TGATGGATTAAACGCATGCTTT 57.283 36.364 17.13 16.41 0.00 3.51
1460 1621 5.515626 AGAACTAAGTTCATCGCGTAATGTC 59.484 40.000 5.77 2.23 44.11 3.06
1635 1814 1.315981 TGAGGAGCTCGCTGTCGAAT 61.316 55.000 7.83 0.00 44.98 3.34
1712 1891 0.534203 GCCAAACCTCCTCGTGACAA 60.534 55.000 0.00 0.00 0.00 3.18
1743 1922 1.227973 GGTTCCCCCGATCAGCATC 60.228 63.158 0.00 0.00 0.00 3.91
1755 1934 1.814169 GGCGATGAAGACGGTTCCC 60.814 63.158 0.00 0.00 0.00 3.97
1876 2055 6.461110 AAGATCATTGGCTTGAATTACTGG 57.539 37.500 0.00 0.00 0.00 4.00
1992 2175 4.145807 GGTTCGGAAGGATGATCTCTCTA 58.854 47.826 0.00 0.00 0.00 2.43
1993 2176 2.962421 GGTTCGGAAGGATGATCTCTCT 59.038 50.000 0.00 0.00 0.00 3.10
1996 2179 2.043227 AGGGTTCGGAAGGATGATCTC 58.957 52.381 0.00 0.00 0.00 2.75
2011 2194 2.363306 TTGTGAACTGATGCAGGGTT 57.637 45.000 0.00 0.00 35.51 4.11
2039 2222 0.545071 TCTCCAGCTCCACACATCCA 60.545 55.000 0.00 0.00 0.00 3.41
2042 2225 1.421268 TGTTTCTCCAGCTCCACACAT 59.579 47.619 0.00 0.00 0.00 3.21
2046 2229 1.070758 TCACTGTTTCTCCAGCTCCAC 59.929 52.381 0.00 0.00 35.83 4.02
2075 2258 6.634805 ACAGGAATCTTATGTCTGTACACAG 58.365 40.000 2.84 2.84 45.08 3.66
2213 2397 8.009974 CACTTGCTACAAGATAACACAACTTAC 58.990 37.037 13.94 0.00 0.00 2.34
2218 2402 4.819088 TGCACTTGCTACAAGATAACACAA 59.181 37.500 13.94 0.00 42.66 3.33
2401 4327 0.177373 TGCTGATGCTGAGCTCGAAT 59.823 50.000 9.64 3.93 40.48 3.34
2455 4381 1.153269 TGCTGCGAGTTTCACCACA 60.153 52.632 0.00 0.00 0.00 4.17
2519 4445 0.392998 GCACCGATGGTCAGGAATGT 60.393 55.000 0.00 0.00 31.02 2.71
2618 4544 2.280524 CGAGGTGGTTCCACGCAA 60.281 61.111 14.63 0.00 42.52 4.85
2635 4561 1.022735 CATCCAGCTCATTCTGCACC 58.977 55.000 0.00 0.00 32.87 5.01
2704 4630 6.704050 GCCTGTACTTCCTCTTGAATATCTTC 59.296 42.308 0.00 0.00 31.06 2.87
2707 4633 5.163301 TGGCCTGTACTTCCTCTTGAATATC 60.163 44.000 3.32 0.00 31.06 1.63
2737 4663 0.394762 GGATCAAGAGCACCATGGCA 60.395 55.000 13.04 0.00 35.83 4.92
2750 4676 3.157087 GCTGGTTGAAGAAAGGGATCAA 58.843 45.455 0.00 0.00 0.00 2.57
2839 4765 2.680352 GACGACAGGAGGGAGGCA 60.680 66.667 0.00 0.00 0.00 4.75
2854 4780 4.338539 AGACGCGTGACCACCGAC 62.339 66.667 20.70 0.00 0.00 4.79
2878 4804 5.657470 TCGCTATGATGTTAGCAAATGTC 57.343 39.130 4.54 0.00 43.92 3.06
2894 4820 0.821517 TCGACCACCAACATCGCTAT 59.178 50.000 0.00 0.00 35.82 2.97
2999 4925 3.486383 TCAACCCATTGTCCTTGAACTC 58.514 45.455 0.00 0.00 37.11 3.01
3073 4999 1.518774 CCATGACCATGCAAAGCCC 59.481 57.895 4.53 0.00 37.49 5.19
3103 5029 2.125773 TCTCAGTAGGGACGAGGAAC 57.874 55.000 0.00 0.00 31.34 3.62
3115 5041 1.007118 TCCAGTGGGCAGATCTCAGTA 59.993 52.381 9.92 0.00 0.00 2.74
3248 5174 0.583438 CATATCCACGCGGCAAAGAG 59.417 55.000 12.47 0.00 0.00 2.85
3304 5230 3.077359 CTCCATCGGAAGCTTCTTTGTT 58.923 45.455 25.05 8.63 0.00 2.83
3347 5273 1.821136 CTTCTTCCAGAACCAATGCCC 59.179 52.381 0.00 0.00 29.89 5.36
3384 5310 6.712276 TCCTTTTCTTCCTCTTCCTTATCAC 58.288 40.000 0.00 0.00 0.00 3.06
3400 5326 5.053978 TCTTTTCTTGCCTCTCCTTTTCT 57.946 39.130 0.00 0.00 0.00 2.52
3420 5354 1.079503 GCTTGGCGAGTCGATTTTCT 58.920 50.000 18.61 0.00 0.00 2.52
3428 5362 1.227118 GCTAGGAGCTTGGCGAGTC 60.227 63.158 3.19 0.07 38.45 3.36
3436 5370 1.840737 TCAGAAGTCGCTAGGAGCTT 58.159 50.000 0.00 0.00 39.60 3.74
3487 5422 9.301153 GCTAATTAAAATCCTGTACCATGTTTG 57.699 33.333 0.00 0.00 0.00 2.93
3649 5587 5.123502 TGAGAGACGGTTCACTTGTACTATC 59.876 44.000 0.00 0.00 0.00 2.08
3650 5588 5.008331 TGAGAGACGGTTCACTTGTACTAT 58.992 41.667 0.00 0.00 0.00 2.12
3651 5589 4.392047 TGAGAGACGGTTCACTTGTACTA 58.608 43.478 0.00 0.00 0.00 1.82
3652 5590 3.220110 TGAGAGACGGTTCACTTGTACT 58.780 45.455 0.00 0.00 0.00 2.73
3653 5591 3.252701 TCTGAGAGACGGTTCACTTGTAC 59.747 47.826 0.00 0.00 0.00 2.90
3656 5594 2.294791 ACTCTGAGAGACGGTTCACTTG 59.705 50.000 17.71 0.00 33.32 3.16
3677 5615 1.829849 CAGACAATCCAGCTCCTCTGA 59.170 52.381 0.00 0.00 45.72 3.27
3678 5616 1.829849 TCAGACAATCCAGCTCCTCTG 59.170 52.381 0.00 0.00 42.49 3.35
3679 5617 2.244486 TCAGACAATCCAGCTCCTCT 57.756 50.000 0.00 0.00 0.00 3.69
3680 5618 3.557228 AATCAGACAATCCAGCTCCTC 57.443 47.619 0.00 0.00 0.00 3.71
3681 5619 4.746089 GCATAATCAGACAATCCAGCTCCT 60.746 45.833 0.00 0.00 0.00 3.69
3682 5620 3.501445 GCATAATCAGACAATCCAGCTCC 59.499 47.826 0.00 0.00 0.00 4.70
3683 5621 4.132336 TGCATAATCAGACAATCCAGCTC 58.868 43.478 0.00 0.00 0.00 4.09
3684 5622 4.160642 TGCATAATCAGACAATCCAGCT 57.839 40.909 0.00 0.00 0.00 4.24
3725 5663 1.535462 CAAGGGCCTGTCACTTTTACG 59.465 52.381 6.92 0.00 0.00 3.18
4074 6013 8.539117 TCCAGTCACTCATTCAAGATCTTATA 57.461 34.615 7.86 0.00 0.00 0.98
4096 6039 3.290710 GAAATTTGGAGCTGGCTATCCA 58.709 45.455 0.00 0.00 43.87 3.41
4097 6040 2.625314 GGAAATTTGGAGCTGGCTATCC 59.375 50.000 0.00 0.00 36.05 2.59
4138 6081 4.252073 ACTGAATGATGAAGCACTGTCTC 58.748 43.478 0.00 0.00 0.00 3.36
4166 6109 6.988580 TCTGCTCATTCTGTTCTATACAATGG 59.011 38.462 0.00 0.00 36.02 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.