Multiple sequence alignment - TraesCS1D01G220900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G220900 chr1D 100.000 3111 0 0 1 3111 308461410 308458300 0.000000e+00 5746.0
1 TraesCS1D01G220900 chr1A 92.277 1981 78 31 465 2403 387842310 387840363 0.000000e+00 2741.0
2 TraesCS1D01G220900 chr1A 83.509 570 35 23 2548 3066 387840230 387839669 7.810000e-131 477.0
3 TraesCS1D01G220900 chr1A 98.113 53 1 0 3059 3111 387839642 387839590 3.300000e-15 93.5
4 TraesCS1D01G220900 chr1B 89.434 2139 112 58 845 2927 418106955 418104875 0.000000e+00 2593.0
5 TraesCS1D01G220900 chr1B 95.580 362 15 1 470 830 418107600 418107239 2.080000e-161 579.0
6 TraesCS1D01G220900 chr1B 90.476 147 8 3 2968 3111 418104876 418104733 4.100000e-44 189.0
7 TraesCS1D01G220900 chr4A 81.164 292 39 14 1700 1987 660654522 660654801 1.450000e-53 220.0
8 TraesCS1D01G220900 chr4A 80.420 286 48 6 1700 1984 660624974 660625252 8.740000e-51 211.0
9 TraesCS1D01G220900 chr4A 79.861 288 48 8 1700 1985 660452662 660452941 5.260000e-48 202.0
10 TraesCS1D01G220900 chr4A 81.452 124 16 4 1447 1568 660452431 660452549 9.180000e-16 95.3
11 TraesCS1D01G220900 chr7A 80.836 287 45 9 1701 1985 48526185 48526463 1.880000e-52 217.0
12 TraesCS1D01G220900 chr7A 84.000 200 30 2 1700 1898 48756249 48756447 1.140000e-44 191.0
13 TraesCS1D01G220900 chr7A 79.094 287 50 9 1701 1985 48715869 48716147 4.100000e-44 189.0
14 TraesCS1D01G220900 chr7A 84.416 154 20 3 260 412 223473135 223472985 6.950000e-32 148.0
15 TraesCS1D01G220900 chr7A 81.967 122 15 4 1447 1566 48525953 48526069 2.550000e-16 97.1
16 TraesCS1D01G220900 chr7D 80.345 290 47 8 1701 1988 46711921 46711640 8.740000e-51 211.0
17 TraesCS1D01G220900 chr7D 80.576 139 18 5 330 462 183027574 183027439 7.100000e-17 99.0
18 TraesCS1D01G220900 chr2D 86.070 201 19 5 1782 1982 527547521 527547712 1.130000e-49 207.0
19 TraesCS1D01G220900 chr2D 79.812 213 31 7 250 456 293712366 293712160 8.990000e-31 145.0
20 TraesCS1D01G220900 chr2A 86.070 201 19 5 1782 1982 672415937 672416128 1.130000e-49 207.0
21 TraesCS1D01G220900 chr5D 82.703 185 30 1 250 432 502885830 502885646 2.480000e-36 163.0
22 TraesCS1D01G220900 chr5D 81.773 203 22 7 1782 1984 344399998 344400185 4.150000e-34 156.0
23 TraesCS1D01G220900 chr5D 86.869 99 10 3 1480 1578 344399611 344399706 1.180000e-19 108.0
24 TraesCS1D01G220900 chr5A 82.266 203 21 8 1782 1984 448091108 448091295 8.930000e-36 161.0
25 TraesCS1D01G220900 chr5A 89.412 85 9 0 1494 1578 448090731 448090815 1.180000e-19 108.0
26 TraesCS1D01G220900 chr3D 81.319 182 28 6 251 428 20328790 20328969 3.230000e-30 143.0
27 TraesCS1D01G220900 chr3D 86.508 126 14 3 308 432 593410377 593410254 5.410000e-28 135.0
28 TraesCS1D01G220900 chr3D 85.542 83 12 0 255 337 436162950 436163032 1.540000e-13 87.9
29 TraesCS1D01G220900 chr6D 84.722 144 19 3 280 421 8264159 8264301 1.160000e-29 141.0
30 TraesCS1D01G220900 chr3A 80.682 176 27 5 258 432 151638286 151638455 2.520000e-26 130.0
31 TraesCS1D01G220900 chr5B 86.869 99 10 3 1480 1578 407817609 407817514 1.180000e-19 108.0
32 TraesCS1D01G220900 chr4D 78.090 178 30 4 285 456 112230034 112230208 1.530000e-18 104.0
33 TraesCS1D01G220900 chr4D 87.500 88 11 0 1494 1581 398669606 398669693 5.490000e-18 102.0
34 TraesCS1D01G220900 chr4D 86.747 83 11 0 350 432 490329091 490329009 3.300000e-15 93.5
35 TraesCS1D01G220900 chr4D 74.324 222 44 8 250 463 16140786 16141002 7.150000e-12 82.4
36 TraesCS1D01G220900 chr4B 86.364 88 12 0 1494 1581 491464688 491464775 2.550000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G220900 chr1D 308458300 308461410 3110 True 5746.000000 5746 100.000000 1 3111 1 chr1D.!!$R1 3110
1 TraesCS1D01G220900 chr1A 387839590 387842310 2720 True 1103.833333 2741 91.299667 465 3111 3 chr1A.!!$R1 2646
2 TraesCS1D01G220900 chr1B 418104733 418107600 2867 True 1120.333333 2593 91.830000 470 3111 3 chr1B.!!$R1 2641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
273 274 0.098025 ACAAACACGTGGCAACTTCG 59.902 50.0 21.57 0.0 39.61 3.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2561 0.031449 CTCTTAGCGAGCTACTGCCC 59.969 60.0 4.05 0.0 40.8 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.794248 TGGCAACATAATCTTCGAATCG 57.206 40.909 0.00 0.00 46.17 3.34
28 29 3.559655 TGGCAACATAATCTTCGAATCGG 59.440 43.478 1.76 0.00 46.17 4.18
29 30 3.560068 GGCAACATAATCTTCGAATCGGT 59.440 43.478 1.76 0.00 0.00 4.69
30 31 4.318831 GGCAACATAATCTTCGAATCGGTC 60.319 45.833 1.76 0.00 0.00 4.79
31 32 4.318831 GCAACATAATCTTCGAATCGGTCC 60.319 45.833 1.76 0.00 0.00 4.46
32 33 4.665833 ACATAATCTTCGAATCGGTCCA 57.334 40.909 1.76 0.00 0.00 4.02
33 34 4.369182 ACATAATCTTCGAATCGGTCCAC 58.631 43.478 1.76 0.00 0.00 4.02
34 35 2.311124 AATCTTCGAATCGGTCCACC 57.689 50.000 1.76 0.00 0.00 4.61
45 46 3.998672 GTCCACCGCCTCCGACAA 61.999 66.667 0.00 0.00 36.29 3.18
46 47 3.998672 TCCACCGCCTCCGACAAC 61.999 66.667 0.00 0.00 36.29 3.32
47 48 4.003788 CCACCGCCTCCGACAACT 62.004 66.667 0.00 0.00 36.29 3.16
48 49 2.030562 CACCGCCTCCGACAACTT 59.969 61.111 0.00 0.00 36.29 2.66
49 50 1.597027 CACCGCCTCCGACAACTTT 60.597 57.895 0.00 0.00 36.29 2.66
50 51 1.597027 ACCGCCTCCGACAACTTTG 60.597 57.895 0.00 0.00 36.29 2.77
51 52 1.301401 CCGCCTCCGACAACTTTGA 60.301 57.895 0.00 0.00 36.29 2.69
52 53 1.566018 CCGCCTCCGACAACTTTGAC 61.566 60.000 0.00 0.00 36.29 3.18
53 54 0.878523 CGCCTCCGACAACTTTGACA 60.879 55.000 0.00 0.00 36.29 3.58
54 55 0.586802 GCCTCCGACAACTTTGACAC 59.413 55.000 0.00 0.00 0.00 3.67
55 56 1.948104 CCTCCGACAACTTTGACACA 58.052 50.000 0.00 0.00 0.00 3.72
56 57 1.867233 CCTCCGACAACTTTGACACAG 59.133 52.381 0.00 0.00 0.00 3.66
57 58 1.867233 CTCCGACAACTTTGACACAGG 59.133 52.381 0.00 0.00 0.00 4.00
58 59 0.307760 CCGACAACTTTGACACAGGC 59.692 55.000 0.00 0.00 0.00 4.85
59 60 1.013596 CGACAACTTTGACACAGGCA 58.986 50.000 0.00 0.00 0.00 4.75
60 61 1.603802 CGACAACTTTGACACAGGCAT 59.396 47.619 0.00 0.00 0.00 4.40
61 62 2.805671 CGACAACTTTGACACAGGCATA 59.194 45.455 0.00 0.00 0.00 3.14
62 63 3.120546 CGACAACTTTGACACAGGCATAG 60.121 47.826 0.00 0.00 0.00 2.23
63 64 3.815401 GACAACTTTGACACAGGCATAGT 59.185 43.478 0.00 0.00 0.00 2.12
64 65 4.968259 ACAACTTTGACACAGGCATAGTA 58.032 39.130 0.00 0.00 29.41 1.82
65 66 4.755123 ACAACTTTGACACAGGCATAGTAC 59.245 41.667 0.00 0.00 29.41 2.73
66 67 3.939066 ACTTTGACACAGGCATAGTACC 58.061 45.455 0.00 0.00 0.00 3.34
67 68 2.665649 TTGACACAGGCATAGTACCG 57.334 50.000 0.00 0.00 0.00 4.02
68 69 0.821517 TGACACAGGCATAGTACCGG 59.178 55.000 0.00 0.00 0.00 5.28
69 70 0.822164 GACACAGGCATAGTACCGGT 59.178 55.000 13.98 13.98 35.89 5.28
70 71 0.822164 ACACAGGCATAGTACCGGTC 59.178 55.000 12.40 2.55 32.96 4.79
71 72 1.112113 CACAGGCATAGTACCGGTCT 58.888 55.000 12.40 11.28 32.96 3.85
72 73 1.480954 CACAGGCATAGTACCGGTCTT 59.519 52.381 12.40 2.47 32.96 3.01
73 74 2.093658 CACAGGCATAGTACCGGTCTTT 60.094 50.000 12.40 0.00 32.96 2.52
74 75 2.570302 ACAGGCATAGTACCGGTCTTTT 59.430 45.455 12.40 0.00 28.71 2.27
75 76 3.770933 ACAGGCATAGTACCGGTCTTTTA 59.229 43.478 12.40 0.00 28.71 1.52
76 77 4.407945 ACAGGCATAGTACCGGTCTTTTAT 59.592 41.667 12.40 2.06 28.71 1.40
77 78 4.750098 CAGGCATAGTACCGGTCTTTTATG 59.250 45.833 12.40 15.59 0.00 1.90
78 79 4.407945 AGGCATAGTACCGGTCTTTTATGT 59.592 41.667 12.40 0.00 0.00 2.29
79 80 4.748600 GGCATAGTACCGGTCTTTTATGTC 59.251 45.833 12.40 12.86 0.00 3.06
80 81 5.452917 GGCATAGTACCGGTCTTTTATGTCT 60.453 44.000 12.40 0.00 0.00 3.41
81 82 6.047231 GCATAGTACCGGTCTTTTATGTCTT 58.953 40.000 12.40 0.00 0.00 3.01
82 83 6.537660 GCATAGTACCGGTCTTTTATGTCTTT 59.462 38.462 12.40 0.00 0.00 2.52
83 84 7.707893 GCATAGTACCGGTCTTTTATGTCTTTA 59.292 37.037 12.40 0.00 0.00 1.85
84 85 9.028185 CATAGTACCGGTCTTTTATGTCTTTAC 57.972 37.037 12.40 0.00 0.00 2.01
85 86 7.237209 AGTACCGGTCTTTTATGTCTTTACT 57.763 36.000 12.40 0.00 0.00 2.24
86 87 7.095270 AGTACCGGTCTTTTATGTCTTTACTG 58.905 38.462 12.40 0.00 0.00 2.74
87 88 5.861727 ACCGGTCTTTTATGTCTTTACTGT 58.138 37.500 0.00 0.00 0.00 3.55
88 89 6.293698 ACCGGTCTTTTATGTCTTTACTGTT 58.706 36.000 0.00 0.00 0.00 3.16
89 90 6.204108 ACCGGTCTTTTATGTCTTTACTGTTG 59.796 38.462 0.00 0.00 0.00 3.33
90 91 6.077838 CGGTCTTTTATGTCTTTACTGTTGC 58.922 40.000 0.00 0.00 0.00 4.17
91 92 6.379386 GGTCTTTTATGTCTTTACTGTTGCC 58.621 40.000 0.00 0.00 0.00 4.52
92 93 6.077838 GTCTTTTATGTCTTTACTGTTGCCG 58.922 40.000 0.00 0.00 0.00 5.69
93 94 5.761234 TCTTTTATGTCTTTACTGTTGCCGT 59.239 36.000 0.00 0.00 0.00 5.68
94 95 6.261381 TCTTTTATGTCTTTACTGTTGCCGTT 59.739 34.615 0.00 0.00 0.00 4.44
95 96 7.441760 TCTTTTATGTCTTTACTGTTGCCGTTA 59.558 33.333 0.00 0.00 0.00 3.18
96 97 7.675962 TTTATGTCTTTACTGTTGCCGTTAT 57.324 32.000 0.00 0.00 0.00 1.89
97 98 8.774890 TTTATGTCTTTACTGTTGCCGTTATA 57.225 30.769 0.00 0.00 0.00 0.98
98 99 8.951787 TTATGTCTTTACTGTTGCCGTTATAT 57.048 30.769 0.00 0.00 0.00 0.86
99 100 7.859325 ATGTCTTTACTGTTGCCGTTATATT 57.141 32.000 0.00 0.00 0.00 1.28
100 101 7.067532 TGTCTTTACTGTTGCCGTTATATTG 57.932 36.000 0.00 0.00 0.00 1.90
101 102 6.651643 TGTCTTTACTGTTGCCGTTATATTGT 59.348 34.615 0.00 0.00 0.00 2.71
102 103 7.173562 TGTCTTTACTGTTGCCGTTATATTGTT 59.826 33.333 0.00 0.00 0.00 2.83
103 104 8.019094 GTCTTTACTGTTGCCGTTATATTGTTT 58.981 33.333 0.00 0.00 0.00 2.83
104 105 9.217278 TCTTTACTGTTGCCGTTATATTGTTTA 57.783 29.630 0.00 0.00 0.00 2.01
105 106 9.997482 CTTTACTGTTGCCGTTATATTGTTTAT 57.003 29.630 0.00 0.00 0.00 1.40
107 108 9.776158 TTACTGTTGCCGTTATATTGTTTATTG 57.224 29.630 0.00 0.00 0.00 1.90
108 109 7.822658 ACTGTTGCCGTTATATTGTTTATTGT 58.177 30.769 0.00 0.00 0.00 2.71
109 110 8.301002 ACTGTTGCCGTTATATTGTTTATTGTT 58.699 29.630 0.00 0.00 0.00 2.83
110 111 9.134734 CTGTTGCCGTTATATTGTTTATTGTTT 57.865 29.630 0.00 0.00 0.00 2.83
111 112 9.477484 TGTTGCCGTTATATTGTTTATTGTTTT 57.523 25.926 0.00 0.00 0.00 2.43
130 131 8.458573 TTGTTTTATTCATACAGTTGGAGTGT 57.541 30.769 0.00 0.00 35.61 3.55
131 132 7.870826 TGTTTTATTCATACAGTTGGAGTGTG 58.129 34.615 0.00 0.00 33.15 3.82
132 133 7.040755 TGTTTTATTCATACAGTTGGAGTGTGG 60.041 37.037 0.00 0.00 33.15 4.17
133 134 2.472695 TCATACAGTTGGAGTGTGGC 57.527 50.000 0.00 0.00 33.15 5.01
134 135 1.977854 TCATACAGTTGGAGTGTGGCT 59.022 47.619 0.00 0.00 33.15 4.75
135 136 2.079158 CATACAGTTGGAGTGTGGCTG 58.921 52.381 0.00 0.00 33.15 4.85
136 137 0.250295 TACAGTTGGAGTGTGGCTGC 60.250 55.000 0.00 0.00 33.15 5.25
137 138 2.281070 AGTTGGAGTGTGGCTGCG 60.281 61.111 0.00 0.00 38.50 5.18
138 139 2.591715 GTTGGAGTGTGGCTGCGT 60.592 61.111 0.00 0.00 38.50 5.24
139 140 2.591429 TTGGAGTGTGGCTGCGTG 60.591 61.111 0.00 0.00 38.50 5.34
142 143 3.052082 GAGTGTGGCTGCGTGCAT 61.052 61.111 0.00 0.00 45.15 3.96
143 144 1.741401 GAGTGTGGCTGCGTGCATA 60.741 57.895 0.00 0.00 45.15 3.14
144 145 1.078214 AGTGTGGCTGCGTGCATAT 60.078 52.632 0.00 0.00 45.15 1.78
145 146 0.677731 AGTGTGGCTGCGTGCATATT 60.678 50.000 0.00 0.00 45.15 1.28
146 147 0.171007 GTGTGGCTGCGTGCATATTT 59.829 50.000 0.00 0.00 45.15 1.40
147 148 0.170784 TGTGGCTGCGTGCATATTTG 59.829 50.000 0.00 0.00 45.15 2.32
148 149 0.526096 GTGGCTGCGTGCATATTTGG 60.526 55.000 0.00 0.00 45.15 3.28
149 150 1.589727 GGCTGCGTGCATATTTGGC 60.590 57.895 0.00 0.00 45.15 4.52
150 151 1.589727 GCTGCGTGCATATTTGGCC 60.590 57.895 0.00 0.00 42.31 5.36
151 152 1.298563 CTGCGTGCATATTTGGCCG 60.299 57.895 0.00 0.00 0.00 6.13
152 153 2.026014 GCGTGCATATTTGGCCGG 59.974 61.111 0.00 0.00 0.00 6.13
153 154 2.721231 CGTGCATATTTGGCCGGG 59.279 61.111 2.18 0.00 0.00 5.73
154 155 2.118404 CGTGCATATTTGGCCGGGT 61.118 57.895 2.18 0.00 0.00 5.28
155 156 1.437160 GTGCATATTTGGCCGGGTG 59.563 57.895 2.18 0.00 0.00 4.61
156 157 1.000270 TGCATATTTGGCCGGGTGT 60.000 52.632 2.18 0.00 0.00 4.16
157 158 0.613292 TGCATATTTGGCCGGGTGTT 60.613 50.000 2.18 0.00 0.00 3.32
158 159 0.179113 GCATATTTGGCCGGGTGTTG 60.179 55.000 2.18 0.00 0.00 3.33
159 160 0.179113 CATATTTGGCCGGGTGTTGC 60.179 55.000 2.18 0.00 0.00 4.17
160 161 0.324275 ATATTTGGCCGGGTGTTGCT 60.324 50.000 2.18 0.00 0.00 3.91
161 162 0.963355 TATTTGGCCGGGTGTTGCTC 60.963 55.000 2.18 0.00 0.00 4.26
162 163 2.992817 ATTTGGCCGGGTGTTGCTCA 62.993 55.000 2.18 0.00 0.00 4.26
163 164 3.723097 TTGGCCGGGTGTTGCTCAA 62.723 57.895 2.18 0.00 0.00 3.02
164 165 2.909965 GGCCGGGTGTTGCTCAAA 60.910 61.111 2.18 0.00 0.00 2.69
165 166 2.335011 GCCGGGTGTTGCTCAAAC 59.665 61.111 2.18 0.00 39.41 2.93
166 167 2.637025 CCGGGTGTTGCTCAAACG 59.363 61.111 0.00 0.00 42.10 3.60
167 168 2.184167 CCGGGTGTTGCTCAAACGT 61.184 57.895 0.00 0.00 42.10 3.99
168 169 1.720694 CCGGGTGTTGCTCAAACGTT 61.721 55.000 0.00 0.00 42.10 3.99
169 170 0.591236 CGGGTGTTGCTCAAACGTTG 60.591 55.000 0.00 0.00 42.10 4.10
170 171 0.869880 GGGTGTTGCTCAAACGTTGC 60.870 55.000 0.00 1.08 42.10 4.17
171 172 0.100503 GGTGTTGCTCAAACGTTGCT 59.899 50.000 0.00 0.00 42.10 3.91
172 173 1.332375 GGTGTTGCTCAAACGTTGCTA 59.668 47.619 0.00 0.00 42.10 3.49
173 174 2.223386 GGTGTTGCTCAAACGTTGCTAA 60.223 45.455 0.00 0.00 42.10 3.09
174 175 3.550030 GGTGTTGCTCAAACGTTGCTAAT 60.550 43.478 0.00 0.00 42.10 1.73
175 176 3.664025 GTGTTGCTCAAACGTTGCTAATC 59.336 43.478 0.00 0.00 42.10 1.75
176 177 3.313803 TGTTGCTCAAACGTTGCTAATCA 59.686 39.130 0.00 0.00 42.10 2.57
177 178 3.536158 TGCTCAAACGTTGCTAATCAC 57.464 42.857 0.00 0.00 0.00 3.06
178 179 2.225491 TGCTCAAACGTTGCTAATCACC 59.775 45.455 0.00 0.00 0.00 4.02
179 180 2.724839 GCTCAAACGTTGCTAATCACCG 60.725 50.000 0.00 0.00 36.61 4.94
180 181 2.478894 CTCAAACGTTGCTAATCACCGT 59.521 45.455 0.00 0.00 45.90 4.83
181 182 2.222213 TCAAACGTTGCTAATCACCGTG 59.778 45.455 0.00 0.00 43.11 4.94
182 183 2.157834 AACGTTGCTAATCACCGTGA 57.842 45.000 3.10 3.10 43.11 4.35
183 184 1.710013 ACGTTGCTAATCACCGTGAG 58.290 50.000 7.41 0.00 42.31 3.51
184 185 1.000506 ACGTTGCTAATCACCGTGAGT 59.999 47.619 7.41 7.06 42.31 3.41
185 186 2.229543 ACGTTGCTAATCACCGTGAGTA 59.770 45.455 7.41 7.91 42.31 2.59
186 187 3.119245 ACGTTGCTAATCACCGTGAGTAT 60.119 43.478 9.02 0.07 42.31 2.12
187 188 3.486108 CGTTGCTAATCACCGTGAGTATC 59.514 47.826 9.02 6.09 0.00 2.24
188 189 3.349488 TGCTAATCACCGTGAGTATCG 57.651 47.619 9.02 0.77 38.61 2.92
194 195 3.417601 CCGTGAGTATCGGCTCGA 58.582 61.111 0.00 0.00 41.48 4.04
196 197 0.110147 CCGTGAGTATCGGCTCGATC 60.110 60.000 12.43 6.26 43.45 3.69
197 198 0.869068 CGTGAGTATCGGCTCGATCT 59.131 55.000 12.43 9.99 43.45 2.75
198 199 2.067013 CGTGAGTATCGGCTCGATCTA 58.933 52.381 12.43 0.00 43.45 1.98
199 200 2.159814 CGTGAGTATCGGCTCGATCTAC 60.160 54.545 12.43 7.58 43.45 2.59
200 201 2.806818 GTGAGTATCGGCTCGATCTACA 59.193 50.000 12.43 8.91 43.45 2.74
201 202 3.437395 GTGAGTATCGGCTCGATCTACAT 59.563 47.826 12.43 0.16 43.45 2.29
202 203 4.072839 TGAGTATCGGCTCGATCTACATT 58.927 43.478 12.43 0.00 43.45 2.71
203 204 4.519350 TGAGTATCGGCTCGATCTACATTT 59.481 41.667 12.43 0.00 43.45 2.32
204 205 5.009710 TGAGTATCGGCTCGATCTACATTTT 59.990 40.000 12.43 0.00 43.45 1.82
205 206 5.223382 AGTATCGGCTCGATCTACATTTTG 58.777 41.667 12.43 0.00 43.45 2.44
206 207 3.793797 TCGGCTCGATCTACATTTTGA 57.206 42.857 0.00 0.00 0.00 2.69
207 208 3.706698 TCGGCTCGATCTACATTTTGAG 58.293 45.455 0.00 0.00 0.00 3.02
208 209 3.130516 TCGGCTCGATCTACATTTTGAGT 59.869 43.478 0.00 0.00 0.00 3.41
209 210 3.865745 CGGCTCGATCTACATTTTGAGTT 59.134 43.478 0.00 0.00 0.00 3.01
210 211 4.259970 CGGCTCGATCTACATTTTGAGTTG 60.260 45.833 0.00 0.00 0.00 3.16
211 212 4.870426 GGCTCGATCTACATTTTGAGTTGA 59.130 41.667 0.00 0.00 0.00 3.18
212 213 5.525378 GGCTCGATCTACATTTTGAGTTGAT 59.475 40.000 0.00 0.00 34.88 2.57
213 214 6.701841 GGCTCGATCTACATTTTGAGTTGATA 59.298 38.462 0.00 0.00 32.91 2.15
214 215 7.224753 GGCTCGATCTACATTTTGAGTTGATAA 59.775 37.037 0.00 0.00 32.91 1.75
215 216 8.604035 GCTCGATCTACATTTTGAGTTGATAAA 58.396 33.333 0.00 0.00 32.91 1.40
253 254 2.808906 AAAGGACCCTGATAAGTGGC 57.191 50.000 0.00 0.00 0.00 5.01
254 255 1.668826 AAGGACCCTGATAAGTGGCA 58.331 50.000 0.00 0.00 0.00 4.92
255 256 0.912486 AGGACCCTGATAAGTGGCAC 59.088 55.000 10.29 10.29 0.00 5.01
256 257 0.618458 GGACCCTGATAAGTGGCACA 59.382 55.000 21.41 0.00 0.00 4.57
257 258 1.004277 GGACCCTGATAAGTGGCACAA 59.996 52.381 21.41 7.85 44.16 3.33
258 259 2.554344 GGACCCTGATAAGTGGCACAAA 60.554 50.000 21.41 7.44 44.16 2.83
259 260 2.488153 GACCCTGATAAGTGGCACAAAC 59.512 50.000 21.41 6.85 44.16 2.93
260 261 2.158534 ACCCTGATAAGTGGCACAAACA 60.159 45.455 21.41 11.12 44.16 2.83
261 262 2.228822 CCCTGATAAGTGGCACAAACAC 59.771 50.000 21.41 7.56 44.16 3.32
262 263 2.095768 CCTGATAAGTGGCACAAACACG 60.096 50.000 21.41 3.79 44.16 4.49
263 264 2.548057 CTGATAAGTGGCACAAACACGT 59.452 45.455 21.41 0.00 44.16 4.49
264 265 2.289274 TGATAAGTGGCACAAACACGTG 59.711 45.455 21.41 15.48 44.16 4.49
265 266 1.018148 TAAGTGGCACAAACACGTGG 58.982 50.000 21.57 4.47 44.16 4.94
269 270 3.686863 GCACAAACACGTGGCAAC 58.313 55.556 21.57 0.00 37.37 4.17
270 271 1.138671 GCACAAACACGTGGCAACT 59.861 52.632 21.57 0.00 37.37 3.16
271 272 0.457681 GCACAAACACGTGGCAACTT 60.458 50.000 21.57 0.92 37.37 2.66
272 273 1.544686 CACAAACACGTGGCAACTTC 58.455 50.000 21.57 0.00 33.05 3.01
273 274 0.098025 ACAAACACGTGGCAACTTCG 59.902 50.000 21.57 0.00 39.61 3.79
274 275 0.375454 CAAACACGTGGCAACTTCGA 59.625 50.000 21.57 0.00 38.01 3.71
275 276 1.088306 AAACACGTGGCAACTTCGAA 58.912 45.000 21.57 0.00 38.01 3.71
276 277 0.375803 AACACGTGGCAACTTCGAAC 59.624 50.000 21.57 0.00 38.01 3.95
277 278 0.741574 ACACGTGGCAACTTCGAACA 60.742 50.000 21.57 0.00 38.01 3.18
278 279 0.586319 CACGTGGCAACTTCGAACAT 59.414 50.000 7.95 0.00 38.01 2.71
279 280 1.002900 CACGTGGCAACTTCGAACATT 60.003 47.619 7.95 0.00 38.01 2.71
280 281 1.673920 ACGTGGCAACTTCGAACATTT 59.326 42.857 2.05 0.00 38.01 2.32
281 282 2.098443 ACGTGGCAACTTCGAACATTTT 59.902 40.909 2.05 0.00 38.01 1.82
282 283 3.112580 CGTGGCAACTTCGAACATTTTT 58.887 40.909 0.00 0.00 36.93 1.94
335 336 6.463995 AACTTTAGTTGTCAAGCATGGAAA 57.536 33.333 0.00 0.00 36.80 3.13
336 337 5.831997 ACTTTAGTTGTCAAGCATGGAAAC 58.168 37.500 0.00 0.00 0.00 2.78
337 338 5.594317 ACTTTAGTTGTCAAGCATGGAAACT 59.406 36.000 12.55 12.55 36.87 2.66
338 339 6.096846 ACTTTAGTTGTCAAGCATGGAAACTT 59.903 34.615 12.99 0.00 35.55 2.66
339 340 4.574599 AGTTGTCAAGCATGGAAACTTC 57.425 40.909 0.00 0.00 32.28 3.01
340 341 4.210331 AGTTGTCAAGCATGGAAACTTCT 58.790 39.130 0.00 0.00 32.28 2.85
341 342 4.646492 AGTTGTCAAGCATGGAAACTTCTT 59.354 37.500 0.00 0.00 32.28 2.52
342 343 5.127682 AGTTGTCAAGCATGGAAACTTCTTT 59.872 36.000 0.00 0.00 32.28 2.52
343 344 5.596836 TGTCAAGCATGGAAACTTCTTTT 57.403 34.783 0.00 0.00 0.00 2.27
344 345 5.591099 TGTCAAGCATGGAAACTTCTTTTC 58.409 37.500 0.00 0.00 42.74 2.29
345 346 4.676924 GTCAAGCATGGAAACTTCTTTTCG 59.323 41.667 0.00 0.00 44.20 3.46
346 347 4.578516 TCAAGCATGGAAACTTCTTTTCGA 59.421 37.500 0.00 0.00 44.20 3.71
347 348 5.067153 TCAAGCATGGAAACTTCTTTTCGAA 59.933 36.000 0.00 0.00 44.20 3.71
356 357 3.923017 CTTCTTTTCGAAGGGCATGTT 57.077 42.857 0.00 0.00 44.37 2.71
357 358 4.243007 CTTCTTTTCGAAGGGCATGTTT 57.757 40.909 0.00 0.00 44.37 2.83
358 359 3.915437 TCTTTTCGAAGGGCATGTTTC 57.085 42.857 0.00 0.00 0.00 2.78
359 360 3.218453 TCTTTTCGAAGGGCATGTTTCA 58.782 40.909 0.00 0.00 0.00 2.69
360 361 3.253188 TCTTTTCGAAGGGCATGTTTCAG 59.747 43.478 0.00 0.00 0.00 3.02
361 362 2.270352 TTCGAAGGGCATGTTTCAGT 57.730 45.000 0.00 0.00 0.00 3.41
362 363 2.270352 TCGAAGGGCATGTTTCAGTT 57.730 45.000 0.00 0.00 0.00 3.16
363 364 3.410631 TCGAAGGGCATGTTTCAGTTA 57.589 42.857 0.00 0.00 0.00 2.24
364 365 3.950397 TCGAAGGGCATGTTTCAGTTAT 58.050 40.909 0.00 0.00 0.00 1.89
365 366 4.331968 TCGAAGGGCATGTTTCAGTTATT 58.668 39.130 0.00 0.00 0.00 1.40
366 367 4.764823 TCGAAGGGCATGTTTCAGTTATTT 59.235 37.500 0.00 0.00 0.00 1.40
367 368 5.242838 TCGAAGGGCATGTTTCAGTTATTTT 59.757 36.000 0.00 0.00 0.00 1.82
368 369 5.925969 CGAAGGGCATGTTTCAGTTATTTTT 59.074 36.000 0.00 0.00 0.00 1.94
369 370 6.128849 CGAAGGGCATGTTTCAGTTATTTTTG 60.129 38.462 0.00 0.00 0.00 2.44
370 371 5.550290 AGGGCATGTTTCAGTTATTTTTGG 58.450 37.500 0.00 0.00 0.00 3.28
371 372 5.306678 AGGGCATGTTTCAGTTATTTTTGGA 59.693 36.000 0.00 0.00 0.00 3.53
372 373 6.013466 AGGGCATGTTTCAGTTATTTTTGGAT 60.013 34.615 0.00 0.00 0.00 3.41
373 374 6.654582 GGGCATGTTTCAGTTATTTTTGGATT 59.345 34.615 0.00 0.00 0.00 3.01
374 375 7.174772 GGGCATGTTTCAGTTATTTTTGGATTT 59.825 33.333 0.00 0.00 0.00 2.17
375 376 8.016801 GGCATGTTTCAGTTATTTTTGGATTTG 58.983 33.333 0.00 0.00 0.00 2.32
376 377 8.558700 GCATGTTTCAGTTATTTTTGGATTTGT 58.441 29.630 0.00 0.00 0.00 2.83
403 404 8.506168 TTTTCTGTTCAGATGACAACTTTAGT 57.494 30.769 3.28 0.00 0.00 2.24
404 405 8.506168 TTTCTGTTCAGATGACAACTTTAGTT 57.494 30.769 3.28 0.00 39.12 2.24
438 439 2.315925 ACGGGAGTGCTTCATACATG 57.684 50.000 0.00 0.00 44.82 3.21
439 440 1.555075 ACGGGAGTGCTTCATACATGT 59.445 47.619 2.69 2.69 44.82 3.21
440 441 1.935873 CGGGAGTGCTTCATACATGTG 59.064 52.381 9.11 0.00 0.00 3.21
441 442 2.418609 CGGGAGTGCTTCATACATGTGA 60.419 50.000 9.11 0.00 0.00 3.58
442 443 2.939103 GGGAGTGCTTCATACATGTGAC 59.061 50.000 9.11 0.00 0.00 3.67
443 444 3.599343 GGAGTGCTTCATACATGTGACA 58.401 45.455 9.11 0.00 0.00 3.58
444 445 3.372206 GGAGTGCTTCATACATGTGACAC 59.628 47.826 9.11 7.50 0.00 3.67
445 446 4.248859 GAGTGCTTCATACATGTGACACT 58.751 43.478 9.11 11.94 39.67 3.55
446 447 4.645535 AGTGCTTCATACATGTGACACTT 58.354 39.130 9.11 0.00 33.56 3.16
447 448 4.453478 AGTGCTTCATACATGTGACACTTG 59.547 41.667 17.43 17.43 33.56 3.16
448 449 4.214119 GTGCTTCATACATGTGACACTTGT 59.786 41.667 25.10 25.10 39.41 3.16
449 450 4.452114 TGCTTCATACATGTGACACTTGTC 59.548 41.667 25.39 13.61 44.97 3.18
516 517 6.670233 AGATTCGTGCAAATAAAACGGTTTA 58.330 32.000 8.33 8.33 37.87 2.01
521 522 6.750963 TCGTGCAAATAAAACGGTTTAAAACT 59.249 30.769 10.16 0.00 37.87 2.66
630 632 1.338105 GGGCAATCCAAAAGAGGTTGC 60.338 52.381 0.13 0.13 41.12 4.17
766 791 1.704628 TGACCAGCTTTCTCCATTCCA 59.295 47.619 0.00 0.00 0.00 3.53
848 1149 3.774144 TCAGCCCTCTGAAGTCTGA 57.226 52.632 0.00 0.00 45.69 3.27
868 1169 2.415010 CCTGATCCTCACTCCGCG 59.585 66.667 0.00 0.00 0.00 6.46
934 1236 4.007644 CGGTCACCAGCTCCAGCA 62.008 66.667 0.48 0.00 45.16 4.41
1023 1325 2.758979 GGAGATGACTGTTAACGGGAGA 59.241 50.000 18.52 2.39 0.00 3.71
1040 1342 2.524394 AGACACCGAGCACCACCT 60.524 61.111 0.00 0.00 0.00 4.00
1128 1442 2.353958 CCCCAGCATGCTGTGACT 59.646 61.111 38.22 8.04 42.15 3.41
1233 1550 0.812811 AACGCTCGCATGCAGATGAT 60.813 50.000 19.57 4.15 0.00 2.45
1471 1788 4.081030 GCGACGACGAGGACGACA 62.081 66.667 12.29 0.00 42.66 4.35
1472 1789 2.096030 CGACGACGAGGACGACAG 59.904 66.667 0.00 0.00 42.66 3.51
1669 1986 7.365741 CCAATATTTCTTCTTTCATCCATCCG 58.634 38.462 0.00 0.00 0.00 4.18
1670 1987 7.013655 CCAATATTTCTTCTTTCATCCATCCGT 59.986 37.037 0.00 0.00 0.00 4.69
1671 1988 7.736447 ATATTTCTTCTTTCATCCATCCGTC 57.264 36.000 0.00 0.00 0.00 4.79
1672 1989 4.826274 TTCTTCTTTCATCCATCCGTCT 57.174 40.909 0.00 0.00 0.00 4.18
1673 1990 5.932619 TTCTTCTTTCATCCATCCGTCTA 57.067 39.130 0.00 0.00 0.00 2.59
2119 2441 4.446371 CCCAGAGGTCATGATGAACTAAC 58.554 47.826 13.82 1.77 45.99 2.34
2134 2456 6.399639 TGAACTAACTAGTGTGTCATGTCA 57.600 37.500 0.00 0.00 36.50 3.58
2161 2491 4.926238 GTCATGTGTTAGTGAGTTGAGAGG 59.074 45.833 0.00 0.00 0.00 3.69
2174 2504 3.515901 AGTTGAGAGGTTACCATCCAGTC 59.484 47.826 3.51 0.00 0.00 3.51
2175 2505 3.474798 TGAGAGGTTACCATCCAGTCT 57.525 47.619 3.51 0.00 0.00 3.24
2204 2544 9.308000 CTACTTGATGGAGTATCTAGGAAGAAT 57.692 37.037 0.00 0.00 41.23 2.40
2211 2551 6.438741 TGGAGTATCTAGGAAGAATAGGCATG 59.561 42.308 0.00 0.00 34.73 4.06
2218 2558 5.041191 AGGAAGAATAGGCATGGTAACTG 57.959 43.478 0.00 0.00 37.61 3.16
2219 2559 4.475016 AGGAAGAATAGGCATGGTAACTGT 59.525 41.667 0.00 0.00 37.61 3.55
2220 2560 5.665812 AGGAAGAATAGGCATGGTAACTGTA 59.334 40.000 0.00 0.00 37.61 2.74
2221 2561 5.992217 GGAAGAATAGGCATGGTAACTGTAG 59.008 44.000 0.00 0.00 37.61 2.74
2222 2562 5.552870 AGAATAGGCATGGTAACTGTAGG 57.447 43.478 0.00 0.00 37.61 3.18
2223 2563 4.348168 AGAATAGGCATGGTAACTGTAGGG 59.652 45.833 0.00 0.00 37.61 3.53
2224 2564 0.546598 AGGCATGGTAACTGTAGGGC 59.453 55.000 0.00 0.00 37.61 5.19
2225 2565 0.254747 GGCATGGTAACTGTAGGGCA 59.745 55.000 0.00 0.00 37.61 5.36
2239 2579 2.116383 GGGCAGTAGCTCGCTAAGA 58.884 57.895 0.00 0.00 41.70 2.10
2256 2596 7.460071 TCGCTAAGAGAAGTAACTAGGGATAT 58.540 38.462 0.00 0.00 0.00 1.63
2257 2597 8.600668 TCGCTAAGAGAAGTAACTAGGGATATA 58.399 37.037 0.00 0.00 0.00 0.86
2325 2671 8.117813 TGAACTTAGAAACTTTTGTTGTTCCT 57.882 30.769 0.00 0.00 42.67 3.36
2337 2683 9.373603 ACTTTTGTTGTTCCTTTTGTTTATACC 57.626 29.630 0.00 0.00 0.00 2.73
2338 2684 8.719560 TTTTGTTGTTCCTTTTGTTTATACCC 57.280 30.769 0.00 0.00 0.00 3.69
2339 2685 7.419711 TTGTTGTTCCTTTTGTTTATACCCA 57.580 32.000 0.00 0.00 0.00 4.51
2340 2686 7.419711 TGTTGTTCCTTTTGTTTATACCCAA 57.580 32.000 0.00 0.00 0.00 4.12
2341 2687 7.266400 TGTTGTTCCTTTTGTTTATACCCAAC 58.734 34.615 0.00 0.00 0.00 3.77
2342 2688 7.093465 TGTTGTTCCTTTTGTTTATACCCAACA 60.093 33.333 0.00 0.00 36.07 3.33
2380 2727 3.256631 ACTCAAGTGATGCAATGGGTTTC 59.743 43.478 0.00 0.00 0.00 2.78
2385 2732 4.012374 AGTGATGCAATGGGTTTCAGTAG 58.988 43.478 0.00 0.00 0.00 2.57
2415 2762 3.794475 GCATACAAATCAGCTCACCATGC 60.794 47.826 0.00 0.00 0.00 4.06
2421 2768 0.607217 TCAGCTCACCATGCCTTGTG 60.607 55.000 0.00 0.00 0.00 3.33
2422 2769 0.892358 CAGCTCACCATGCCTTGTGT 60.892 55.000 0.00 0.00 34.14 3.72
2424 2771 0.038892 GCTCACCATGCCTTGTGTTG 60.039 55.000 0.64 0.00 34.14 3.33
2426 2773 0.754587 TCACCATGCCTTGTGTTGCA 60.755 50.000 0.64 0.00 42.52 4.08
2428 2775 1.545136 CACCATGCCTTGTGTTGCATA 59.455 47.619 0.00 0.00 45.98 3.14
2430 2777 2.231964 ACCATGCCTTGTGTTGCATAAG 59.768 45.455 0.00 0.00 45.98 1.73
2431 2778 2.231964 CCATGCCTTGTGTTGCATAAGT 59.768 45.455 0.00 0.00 45.98 2.24
2432 2779 3.247442 CATGCCTTGTGTTGCATAAGTG 58.753 45.455 0.00 0.00 45.98 3.16
2433 2780 2.305928 TGCCTTGTGTTGCATAAGTGT 58.694 42.857 0.00 0.00 32.04 3.55
2434 2781 3.481453 TGCCTTGTGTTGCATAAGTGTA 58.519 40.909 0.00 0.00 32.04 2.90
2435 2782 4.078537 TGCCTTGTGTTGCATAAGTGTAT 58.921 39.130 0.00 0.00 32.04 2.29
2436 2783 4.082841 TGCCTTGTGTTGCATAAGTGTATG 60.083 41.667 0.00 0.00 40.23 2.39
2437 2784 4.155826 GCCTTGTGTTGCATAAGTGTATGA 59.844 41.667 0.00 0.00 39.72 2.15
2438 2785 5.674569 GCCTTGTGTTGCATAAGTGTATGAG 60.675 44.000 0.00 0.00 39.72 2.90
2439 2786 5.643348 CCTTGTGTTGCATAAGTGTATGAGA 59.357 40.000 0.00 0.00 39.72 3.27
2440 2787 6.183360 CCTTGTGTTGCATAAGTGTATGAGAG 60.183 42.308 0.00 0.00 39.72 3.20
2441 2788 4.631377 TGTGTTGCATAAGTGTATGAGAGC 59.369 41.667 0.00 0.00 39.72 4.09
2442 2789 4.631377 GTGTTGCATAAGTGTATGAGAGCA 59.369 41.667 0.00 0.00 39.72 4.26
2443 2790 5.295292 GTGTTGCATAAGTGTATGAGAGCAT 59.705 40.000 0.00 0.00 39.72 3.79
2444 2791 6.479990 GTGTTGCATAAGTGTATGAGAGCATA 59.520 38.462 0.00 0.00 39.72 3.14
2445 2792 7.011389 GTGTTGCATAAGTGTATGAGAGCATAA 59.989 37.037 0.00 0.00 39.72 1.90
2446 2793 7.011389 TGTTGCATAAGTGTATGAGAGCATAAC 59.989 37.037 0.00 0.00 39.72 1.89
2447 2794 6.820335 TGCATAAGTGTATGAGAGCATAACT 58.180 36.000 0.00 0.00 39.72 2.24
2448 2795 6.703165 TGCATAAGTGTATGAGAGCATAACTG 59.297 38.462 0.00 0.00 39.72 3.16
2449 2796 6.925718 GCATAAGTGTATGAGAGCATAACTGA 59.074 38.462 0.00 0.00 39.72 3.41
2450 2797 7.116090 GCATAAGTGTATGAGAGCATAACTGAG 59.884 40.741 0.00 0.00 39.72 3.35
2451 2798 4.942852 AGTGTATGAGAGCATAACTGAGC 58.057 43.478 0.00 0.00 38.64 4.26
2452 2799 4.403752 AGTGTATGAGAGCATAACTGAGCA 59.596 41.667 0.00 0.00 38.64 4.26
2453 2800 5.105187 AGTGTATGAGAGCATAACTGAGCAA 60.105 40.000 0.00 0.00 38.64 3.91
2454 2801 5.233902 GTGTATGAGAGCATAACTGAGCAAG 59.766 44.000 0.00 0.00 38.64 4.01
2455 2802 2.625737 TGAGAGCATAACTGAGCAAGC 58.374 47.619 0.00 0.00 0.00 4.01
2477 2824 4.573201 GCTAAGGTGTTGTCTTGTTGTACA 59.427 41.667 0.00 0.00 0.00 2.90
2494 2841 0.311790 ACAAGCGAGGCATGTGTTTG 59.688 50.000 0.00 0.00 39.04 2.93
2500 2847 1.325640 CGAGGCATGTGTTTGATCTCG 59.674 52.381 0.00 0.00 36.44 4.04
2512 2859 4.191544 GTTTGATCTCGGGACATCAATGA 58.808 43.478 2.27 0.00 38.51 2.57
2513 2860 4.694760 TTGATCTCGGGACATCAATGAT 57.305 40.909 0.00 0.00 34.71 2.45
2514 2861 4.263018 TGATCTCGGGACATCAATGATC 57.737 45.455 0.00 0.00 0.00 2.92
2515 2862 3.642848 TGATCTCGGGACATCAATGATCA 59.357 43.478 0.00 0.00 37.20 2.92
2518 2865 4.383173 TCTCGGGACATCAATGATCAATG 58.617 43.478 4.26 4.26 0.00 2.82
2519 2866 3.479489 TCGGGACATCAATGATCAATGG 58.521 45.455 10.84 0.00 0.00 3.16
2520 2867 3.117926 TCGGGACATCAATGATCAATGGT 60.118 43.478 10.84 0.11 0.00 3.55
2522 2869 4.498513 CGGGACATCAATGATCAATGGTTG 60.499 45.833 10.84 10.95 0.00 3.77
2523 2870 4.646040 GGGACATCAATGATCAATGGTTGA 59.354 41.667 10.84 10.90 45.01 3.18
2530 2877 8.764287 CATCAATGATCAATGGTTGATGATTTG 58.236 33.333 29.50 14.41 46.93 2.32
2533 2880 9.325198 CAATGATCAATGGTTGATGATTTGATT 57.675 29.630 12.54 0.00 46.93 2.57
2538 2885 7.696755 TCAATGGTTGATGATTTGATTAGACG 58.303 34.615 0.00 0.00 34.08 4.18
2541 2888 5.414144 TGGTTGATGATTTGATTAGACGCAA 59.586 36.000 0.00 0.00 0.00 4.85
2546 2936 2.900122 TTTGATTAGACGCAAGCTGC 57.100 45.000 0.00 0.00 45.62 5.25
2560 2950 0.250640 AGCTGCTCAACTGTGGAAGG 60.251 55.000 0.00 0.00 0.00 3.46
2561 2951 0.250467 GCTGCTCAACTGTGGAAGGA 60.250 55.000 0.00 0.00 0.00 3.36
2562 2952 1.815408 GCTGCTCAACTGTGGAAGGAA 60.815 52.381 0.00 0.00 0.00 3.36
2563 2953 2.787994 CTGCTCAACTGTGGAAGGAAT 58.212 47.619 0.00 0.00 0.00 3.01
2564 2954 3.152341 CTGCTCAACTGTGGAAGGAATT 58.848 45.455 0.00 0.00 0.00 2.17
2565 2955 4.326826 CTGCTCAACTGTGGAAGGAATTA 58.673 43.478 0.00 0.00 0.00 1.40
2566 2956 4.922206 TGCTCAACTGTGGAAGGAATTAT 58.078 39.130 0.00 0.00 0.00 1.28
2568 2958 4.034510 GCTCAACTGTGGAAGGAATTATCG 59.965 45.833 0.00 0.00 0.00 2.92
2573 2963 0.534203 TGGAAGGAATTATCGCCCGC 60.534 55.000 0.00 0.00 0.00 6.13
2574 2964 0.250338 GGAAGGAATTATCGCCCGCT 60.250 55.000 0.00 0.00 0.00 5.52
2576 2966 2.549349 GGAAGGAATTATCGCCCGCTAA 60.549 50.000 0.00 0.00 0.00 3.09
2577 2967 2.165319 AGGAATTATCGCCCGCTAAC 57.835 50.000 0.00 0.00 0.00 2.34
2578 2968 0.788391 GGAATTATCGCCCGCTAACG 59.212 55.000 0.00 0.00 39.67 3.18
2579 2969 0.163146 GAATTATCGCCCGCTAACGC 59.837 55.000 0.00 0.00 38.22 4.84
2584 2975 4.492160 CGCCCGCTAACGCAGAGA 62.492 66.667 0.00 0.00 38.22 3.10
2721 3147 9.569167 TCCTTTGCTATACGATATTAATCTTCG 57.431 33.333 15.42 15.42 38.76 3.79
2752 3181 6.289834 TCGTTCTTAACAACAAGGGAACATA 58.710 36.000 0.00 0.00 34.56 2.29
2831 3266 1.603455 CCGGCCCAGCAGAAAAGAA 60.603 57.895 0.00 0.00 0.00 2.52
2871 3316 0.250295 CCAAGGAAAGTCCACTCGCA 60.250 55.000 0.00 0.00 39.61 5.10
2903 3348 0.652180 CACACGTACGCCAAAACACG 60.652 55.000 16.72 0.00 40.15 4.49
2930 3375 1.305219 CGTCGCCCATCACACCAATT 61.305 55.000 0.00 0.00 0.00 2.32
2943 3388 1.172180 ACCAATTGTGCAGGACGTGG 61.172 55.000 4.43 7.47 32.39 4.94
2990 3435 4.884164 CCTGATCTCCAATTACTTTCACCC 59.116 45.833 0.00 0.00 0.00 4.61
3008 3453 6.681729 TCACCCCATCTTATTATACTCCAC 57.318 41.667 0.00 0.00 0.00 4.02
3014 3459 7.817962 CCCCATCTTATTATACTCCACTAAACG 59.182 40.741 0.00 0.00 0.00 3.60
3021 3470 6.528537 TTATACTCCACTAAACGCTGGTAA 57.471 37.500 0.00 0.00 0.00 2.85
3022 3471 3.314541 ACTCCACTAAACGCTGGTAAG 57.685 47.619 0.00 0.00 0.00 2.34
3023 3472 2.631545 ACTCCACTAAACGCTGGTAAGT 59.368 45.455 0.00 0.00 0.00 2.24
3024 3473 3.828451 ACTCCACTAAACGCTGGTAAGTA 59.172 43.478 0.00 0.00 0.00 2.24
3025 3474 4.171754 CTCCACTAAACGCTGGTAAGTAC 58.828 47.826 0.00 0.00 0.00 2.73
3026 3475 3.828451 TCCACTAAACGCTGGTAAGTACT 59.172 43.478 0.00 0.00 0.00 2.73
3027 3476 5.009631 TCCACTAAACGCTGGTAAGTACTA 58.990 41.667 0.00 0.00 0.00 1.82
3039 3488 6.703607 GCTGGTAAGTACTACGAGTGTATAGA 59.296 42.308 0.00 0.00 38.32 1.98
3040 3489 7.095691 GCTGGTAAGTACTACGAGTGTATAGAG 60.096 44.444 0.00 0.00 38.32 2.43
3053 3510 8.784994 ACGAGTGTATAGAGTATCCATTAACAG 58.215 37.037 0.00 0.00 33.66 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.516321 TCGAAGATTATGTTGCCATCCATG 59.484 41.667 0.00 0.00 32.29 3.66
1 2 4.717877 TCGAAGATTATGTTGCCATCCAT 58.282 39.130 0.00 0.00 32.29 3.41
3 4 5.615544 CGATTCGAAGATTATGTTGCCATCC 60.616 44.000 3.35 0.00 35.04 3.51
4 5 5.377358 CGATTCGAAGATTATGTTGCCATC 58.623 41.667 3.35 0.00 35.04 3.51
5 6 4.214119 CCGATTCGAAGATTATGTTGCCAT 59.786 41.667 7.83 0.00 35.04 4.40
6 7 3.559655 CCGATTCGAAGATTATGTTGCCA 59.440 43.478 7.83 0.00 35.04 4.92
7 8 3.560068 ACCGATTCGAAGATTATGTTGCC 59.440 43.478 7.83 0.00 35.04 4.52
8 9 4.318831 GGACCGATTCGAAGATTATGTTGC 60.319 45.833 7.83 0.00 35.04 4.17
9 10 4.808895 TGGACCGATTCGAAGATTATGTTG 59.191 41.667 7.83 0.00 35.04 3.33
12 13 3.741344 GGTGGACCGATTCGAAGATTATG 59.259 47.826 7.83 0.00 35.04 1.90
14 15 3.447918 GGTGGACCGATTCGAAGATTA 57.552 47.619 7.83 0.00 35.04 1.75
15 16 2.311124 GGTGGACCGATTCGAAGATT 57.689 50.000 7.83 0.00 35.04 2.40
28 29 3.998672 TTGTCGGAGGCGGTGGAC 61.999 66.667 0.00 0.00 28.88 4.02
29 30 3.998672 GTTGTCGGAGGCGGTGGA 61.999 66.667 0.00 0.00 28.88 4.02
30 31 3.530910 AAGTTGTCGGAGGCGGTGG 62.531 63.158 0.00 0.00 28.88 4.61
31 32 1.597027 AAAGTTGTCGGAGGCGGTG 60.597 57.895 0.00 0.00 28.88 4.94
32 33 1.597027 CAAAGTTGTCGGAGGCGGT 60.597 57.895 0.00 0.00 28.88 5.68
33 34 1.301401 TCAAAGTTGTCGGAGGCGG 60.301 57.895 0.00 0.00 28.88 6.13
34 35 0.878523 TGTCAAAGTTGTCGGAGGCG 60.879 55.000 0.00 0.00 28.88 5.52
35 36 0.586802 GTGTCAAAGTTGTCGGAGGC 59.413 55.000 0.00 0.00 0.00 4.70
36 37 1.867233 CTGTGTCAAAGTTGTCGGAGG 59.133 52.381 0.00 0.00 0.00 4.30
37 38 1.867233 CCTGTGTCAAAGTTGTCGGAG 59.133 52.381 0.00 0.00 0.00 4.63
38 39 1.948104 CCTGTGTCAAAGTTGTCGGA 58.052 50.000 0.00 0.00 0.00 4.55
39 40 0.307760 GCCTGTGTCAAAGTTGTCGG 59.692 55.000 0.00 0.00 0.00 4.79
40 41 1.013596 TGCCTGTGTCAAAGTTGTCG 58.986 50.000 0.00 0.00 0.00 4.35
41 42 3.815401 ACTATGCCTGTGTCAAAGTTGTC 59.185 43.478 0.00 0.00 0.00 3.18
42 43 3.820557 ACTATGCCTGTGTCAAAGTTGT 58.179 40.909 0.00 0.00 0.00 3.32
43 44 4.154195 GGTACTATGCCTGTGTCAAAGTTG 59.846 45.833 0.00 0.00 0.00 3.16
44 45 4.324267 GGTACTATGCCTGTGTCAAAGTT 58.676 43.478 0.00 0.00 0.00 2.66
45 46 3.616560 CGGTACTATGCCTGTGTCAAAGT 60.617 47.826 0.00 0.00 0.00 2.66
46 47 2.930040 CGGTACTATGCCTGTGTCAAAG 59.070 50.000 0.00 0.00 0.00 2.77
47 48 2.354303 CCGGTACTATGCCTGTGTCAAA 60.354 50.000 0.00 0.00 0.00 2.69
48 49 1.206132 CCGGTACTATGCCTGTGTCAA 59.794 52.381 0.00 0.00 0.00 3.18
49 50 0.821517 CCGGTACTATGCCTGTGTCA 59.178 55.000 0.00 0.00 0.00 3.58
50 51 0.822164 ACCGGTACTATGCCTGTGTC 59.178 55.000 4.49 0.00 0.00 3.67
51 52 0.822164 GACCGGTACTATGCCTGTGT 59.178 55.000 7.34 0.00 0.00 3.72
52 53 1.112113 AGACCGGTACTATGCCTGTG 58.888 55.000 7.34 0.00 0.00 3.66
53 54 1.861982 AAGACCGGTACTATGCCTGT 58.138 50.000 7.34 0.00 0.00 4.00
54 55 2.981859 AAAGACCGGTACTATGCCTG 57.018 50.000 7.34 0.00 0.00 4.85
55 56 4.407945 ACATAAAAGACCGGTACTATGCCT 59.592 41.667 7.34 0.00 0.00 4.75
56 57 4.700700 ACATAAAAGACCGGTACTATGCC 58.299 43.478 7.34 0.00 0.00 4.40
57 58 5.598769 AGACATAAAAGACCGGTACTATGC 58.401 41.667 7.34 8.57 0.00 3.14
58 59 9.028185 GTAAAGACATAAAAGACCGGTACTATG 57.972 37.037 7.34 14.22 0.00 2.23
59 60 8.975295 AGTAAAGACATAAAAGACCGGTACTAT 58.025 33.333 7.34 0.00 0.00 2.12
60 61 8.246180 CAGTAAAGACATAAAAGACCGGTACTA 58.754 37.037 7.34 0.00 0.00 1.82
61 62 7.095270 CAGTAAAGACATAAAAGACCGGTACT 58.905 38.462 7.34 3.50 0.00 2.73
62 63 6.870439 ACAGTAAAGACATAAAAGACCGGTAC 59.130 38.462 7.34 0.60 0.00 3.34
63 64 6.996509 ACAGTAAAGACATAAAAGACCGGTA 58.003 36.000 7.34 0.00 0.00 4.02
64 65 5.861727 ACAGTAAAGACATAAAAGACCGGT 58.138 37.500 6.92 6.92 0.00 5.28
65 66 6.599437 CAACAGTAAAGACATAAAAGACCGG 58.401 40.000 0.00 0.00 0.00 5.28
66 67 6.077838 GCAACAGTAAAGACATAAAAGACCG 58.922 40.000 0.00 0.00 0.00 4.79
67 68 6.379386 GGCAACAGTAAAGACATAAAAGACC 58.621 40.000 0.00 0.00 0.00 3.85
68 69 6.077838 CGGCAACAGTAAAGACATAAAAGAC 58.922 40.000 0.00 0.00 0.00 3.01
69 70 5.761234 ACGGCAACAGTAAAGACATAAAAGA 59.239 36.000 0.00 0.00 0.00 2.52
70 71 5.997385 ACGGCAACAGTAAAGACATAAAAG 58.003 37.500 0.00 0.00 0.00 2.27
71 72 6.380095 AACGGCAACAGTAAAGACATAAAA 57.620 33.333 0.00 0.00 0.00 1.52
72 73 7.675962 ATAACGGCAACAGTAAAGACATAAA 57.324 32.000 0.00 0.00 0.00 1.40
73 74 8.951787 ATATAACGGCAACAGTAAAGACATAA 57.048 30.769 0.00 0.00 0.00 1.90
74 75 8.822855 CAATATAACGGCAACAGTAAAGACATA 58.177 33.333 0.00 0.00 0.00 2.29
75 76 7.335924 ACAATATAACGGCAACAGTAAAGACAT 59.664 33.333 0.00 0.00 0.00 3.06
76 77 6.651643 ACAATATAACGGCAACAGTAAAGACA 59.348 34.615 0.00 0.00 0.00 3.41
77 78 7.068692 ACAATATAACGGCAACAGTAAAGAC 57.931 36.000 0.00 0.00 0.00 3.01
78 79 7.675962 AACAATATAACGGCAACAGTAAAGA 57.324 32.000 0.00 0.00 0.00 2.52
79 80 9.997482 ATAAACAATATAACGGCAACAGTAAAG 57.003 29.630 0.00 0.00 0.00 1.85
81 82 9.776158 CAATAAACAATATAACGGCAACAGTAA 57.224 29.630 0.00 0.00 0.00 2.24
82 83 8.948145 ACAATAAACAATATAACGGCAACAGTA 58.052 29.630 0.00 0.00 0.00 2.74
83 84 7.822658 ACAATAAACAATATAACGGCAACAGT 58.177 30.769 0.00 0.00 0.00 3.55
84 85 8.682128 AACAATAAACAATATAACGGCAACAG 57.318 30.769 0.00 0.00 0.00 3.16
85 86 9.477484 AAAACAATAAACAATATAACGGCAACA 57.523 25.926 0.00 0.00 0.00 3.33
104 105 9.077885 ACACTCCAACTGTATGAATAAAACAAT 57.922 29.630 0.00 0.00 0.00 2.71
105 106 8.349245 CACACTCCAACTGTATGAATAAAACAA 58.651 33.333 0.00 0.00 0.00 2.83
106 107 7.040755 CCACACTCCAACTGTATGAATAAAACA 60.041 37.037 0.00 0.00 0.00 2.83
107 108 7.305474 CCACACTCCAACTGTATGAATAAAAC 58.695 38.462 0.00 0.00 0.00 2.43
108 109 6.072175 GCCACACTCCAACTGTATGAATAAAA 60.072 38.462 0.00 0.00 0.00 1.52
109 110 5.414454 GCCACACTCCAACTGTATGAATAAA 59.586 40.000 0.00 0.00 0.00 1.40
110 111 4.941263 GCCACACTCCAACTGTATGAATAA 59.059 41.667 0.00 0.00 0.00 1.40
111 112 4.225042 AGCCACACTCCAACTGTATGAATA 59.775 41.667 0.00 0.00 0.00 1.75
112 113 3.009473 AGCCACACTCCAACTGTATGAAT 59.991 43.478 0.00 0.00 0.00 2.57
113 114 2.371841 AGCCACACTCCAACTGTATGAA 59.628 45.455 0.00 0.00 0.00 2.57
114 115 1.977854 AGCCACACTCCAACTGTATGA 59.022 47.619 0.00 0.00 0.00 2.15
115 116 2.079158 CAGCCACACTCCAACTGTATG 58.921 52.381 0.00 0.00 0.00 2.39
116 117 1.611673 GCAGCCACACTCCAACTGTAT 60.612 52.381 0.00 0.00 0.00 2.29
117 118 0.250295 GCAGCCACACTCCAACTGTA 60.250 55.000 0.00 0.00 0.00 2.74
118 119 1.526917 GCAGCCACACTCCAACTGT 60.527 57.895 0.00 0.00 0.00 3.55
119 120 2.610694 CGCAGCCACACTCCAACTG 61.611 63.158 0.00 0.00 0.00 3.16
120 121 2.281070 CGCAGCCACACTCCAACT 60.281 61.111 0.00 0.00 0.00 3.16
121 122 2.591715 ACGCAGCCACACTCCAAC 60.592 61.111 0.00 0.00 0.00 3.77
122 123 2.591429 CACGCAGCCACACTCCAA 60.591 61.111 0.00 0.00 0.00 3.53
125 126 1.091771 ATATGCACGCAGCCACACTC 61.092 55.000 0.00 0.00 44.83 3.51
126 127 0.677731 AATATGCACGCAGCCACACT 60.678 50.000 0.00 0.00 44.83 3.55
127 128 0.171007 AAATATGCACGCAGCCACAC 59.829 50.000 0.00 0.00 44.83 3.82
128 129 0.170784 CAAATATGCACGCAGCCACA 59.829 50.000 0.00 0.00 44.83 4.17
129 130 0.526096 CCAAATATGCACGCAGCCAC 60.526 55.000 0.00 0.00 44.83 5.01
130 131 1.808546 CCAAATATGCACGCAGCCA 59.191 52.632 0.00 0.00 44.83 4.75
131 132 1.589727 GCCAAATATGCACGCAGCC 60.590 57.895 0.00 0.00 44.83 4.85
132 133 1.589727 GGCCAAATATGCACGCAGC 60.590 57.895 0.00 0.00 45.96 5.25
133 134 1.298563 CGGCCAAATATGCACGCAG 60.299 57.895 2.24 0.00 0.00 5.18
134 135 2.769539 CCGGCCAAATATGCACGCA 61.770 57.895 2.24 0.00 0.00 5.24
135 136 2.026014 CCGGCCAAATATGCACGC 59.974 61.111 2.24 0.00 0.00 5.34
136 137 2.118404 ACCCGGCCAAATATGCACG 61.118 57.895 2.24 0.00 0.00 5.34
137 138 1.319614 ACACCCGGCCAAATATGCAC 61.320 55.000 2.24 0.00 0.00 4.57
138 139 0.613292 AACACCCGGCCAAATATGCA 60.613 50.000 2.24 0.00 0.00 3.96
139 140 0.179113 CAACACCCGGCCAAATATGC 60.179 55.000 2.24 0.00 0.00 3.14
140 141 0.179113 GCAACACCCGGCCAAATATG 60.179 55.000 2.24 0.00 0.00 1.78
141 142 0.324275 AGCAACACCCGGCCAAATAT 60.324 50.000 2.24 0.00 0.00 1.28
142 143 0.963355 GAGCAACACCCGGCCAAATA 60.963 55.000 2.24 0.00 0.00 1.40
143 144 2.203625 AGCAACACCCGGCCAAAT 60.204 55.556 2.24 0.00 0.00 2.32
144 145 2.909965 GAGCAACACCCGGCCAAA 60.910 61.111 2.24 0.00 0.00 3.28
145 146 3.723097 TTGAGCAACACCCGGCCAA 62.723 57.895 2.24 0.00 0.00 4.52
146 147 3.723097 TTTGAGCAACACCCGGCCA 62.723 57.895 2.24 0.00 0.00 5.36
147 148 2.909965 TTTGAGCAACACCCGGCC 60.910 61.111 0.00 0.00 0.00 6.13
148 149 2.335011 GTTTGAGCAACACCCGGC 59.665 61.111 0.00 0.00 35.18 6.13
149 150 1.720694 AACGTTTGAGCAACACCCGG 61.721 55.000 0.00 0.00 34.68 5.73
150 151 0.591236 CAACGTTTGAGCAACACCCG 60.591 55.000 0.00 0.00 34.68 5.28
151 152 0.869880 GCAACGTTTGAGCAACACCC 60.870 55.000 0.00 0.00 34.68 4.61
152 153 0.100503 AGCAACGTTTGAGCAACACC 59.899 50.000 11.17 0.00 34.68 4.16
153 154 2.748461 TAGCAACGTTTGAGCAACAC 57.252 45.000 11.17 0.00 34.68 3.32
154 155 3.313803 TGATTAGCAACGTTTGAGCAACA 59.686 39.130 11.17 3.61 34.68 3.33
155 156 3.664025 GTGATTAGCAACGTTTGAGCAAC 59.336 43.478 11.17 0.00 0.00 4.17
156 157 3.304391 GGTGATTAGCAACGTTTGAGCAA 60.304 43.478 11.17 4.71 0.00 3.91
157 158 2.225491 GGTGATTAGCAACGTTTGAGCA 59.775 45.455 11.17 0.00 0.00 4.26
158 159 2.851534 GGTGATTAGCAACGTTTGAGC 58.148 47.619 0.00 0.00 0.00 4.26
166 167 3.486108 CGATACTCACGGTGATTAGCAAC 59.514 47.826 19.31 8.61 0.00 4.17
167 168 3.490249 CCGATACTCACGGTGATTAGCAA 60.490 47.826 19.31 0.00 44.57 3.91
168 169 2.034179 CCGATACTCACGGTGATTAGCA 59.966 50.000 19.31 0.00 44.57 3.49
169 170 2.662700 CCGATACTCACGGTGATTAGC 58.337 52.381 11.86 12.04 44.57 3.09
175 176 4.805144 GATCGAGCCGATACTCACGGTG 62.805 59.091 9.60 0.56 47.00 4.94
176 177 2.738757 GATCGAGCCGATACTCACGGT 61.739 57.143 9.60 0.00 47.00 4.83
177 178 0.110147 GATCGAGCCGATACTCACGG 60.110 60.000 9.60 0.00 47.00 4.94
178 179 0.869068 AGATCGAGCCGATACTCACG 59.131 55.000 9.60 0.00 47.00 4.35
179 180 2.806818 TGTAGATCGAGCCGATACTCAC 59.193 50.000 9.60 6.69 47.00 3.51
180 181 3.121738 TGTAGATCGAGCCGATACTCA 57.878 47.619 9.60 6.90 47.00 3.41
181 182 4.688511 AATGTAGATCGAGCCGATACTC 57.311 45.455 9.60 0.55 47.00 2.59
182 183 5.009710 TCAAAATGTAGATCGAGCCGATACT 59.990 40.000 9.60 10.58 47.00 2.12
183 184 5.220381 TCAAAATGTAGATCGAGCCGATAC 58.780 41.667 9.60 6.76 47.00 2.24
184 185 5.009710 ACTCAAAATGTAGATCGAGCCGATA 59.990 40.000 9.60 0.00 47.00 2.92
186 187 3.130516 ACTCAAAATGTAGATCGAGCCGA 59.869 43.478 0.00 0.00 41.13 5.54
187 188 3.448686 ACTCAAAATGTAGATCGAGCCG 58.551 45.455 0.00 0.00 0.00 5.52
188 189 4.870426 TCAACTCAAAATGTAGATCGAGCC 59.130 41.667 0.00 0.00 0.00 4.70
189 190 6.595772 ATCAACTCAAAATGTAGATCGAGC 57.404 37.500 0.00 0.00 0.00 5.03
232 233 3.181423 TGCCACTTATCAGGGTCCTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
233 234 2.378547 TGCCACTTATCAGGGTCCTTTT 59.621 45.455 0.00 0.00 0.00 2.27
234 235 1.992557 TGCCACTTATCAGGGTCCTTT 59.007 47.619 0.00 0.00 0.00 3.11
235 236 1.282157 GTGCCACTTATCAGGGTCCTT 59.718 52.381 0.00 0.00 0.00 3.36
236 237 0.912486 GTGCCACTTATCAGGGTCCT 59.088 55.000 0.00 0.00 0.00 3.85
237 238 0.618458 TGTGCCACTTATCAGGGTCC 59.382 55.000 0.00 0.00 0.00 4.46
238 239 2.488153 GTTTGTGCCACTTATCAGGGTC 59.512 50.000 0.00 0.00 0.00 4.46
239 240 2.158534 TGTTTGTGCCACTTATCAGGGT 60.159 45.455 0.00 0.00 0.00 4.34
240 241 2.228822 GTGTTTGTGCCACTTATCAGGG 59.771 50.000 0.00 0.00 0.00 4.45
241 242 2.095768 CGTGTTTGTGCCACTTATCAGG 60.096 50.000 0.00 0.00 0.00 3.86
242 243 2.548057 ACGTGTTTGTGCCACTTATCAG 59.452 45.455 0.00 0.00 0.00 2.90
243 244 2.289274 CACGTGTTTGTGCCACTTATCA 59.711 45.455 7.58 0.00 32.31 2.15
244 245 2.350388 CCACGTGTTTGTGCCACTTATC 60.350 50.000 15.65 0.00 38.55 1.75
245 246 1.606668 CCACGTGTTTGTGCCACTTAT 59.393 47.619 15.65 0.00 38.55 1.73
246 247 1.018148 CCACGTGTTTGTGCCACTTA 58.982 50.000 15.65 0.00 38.55 2.24
247 248 1.806568 CCACGTGTTTGTGCCACTT 59.193 52.632 15.65 0.00 38.55 3.16
248 249 2.770589 GCCACGTGTTTGTGCCACT 61.771 57.895 15.65 0.00 38.55 4.00
249 250 2.278531 GCCACGTGTTTGTGCCAC 60.279 61.111 15.65 0.00 38.55 5.01
250 251 2.343426 TTGCCACGTGTTTGTGCCA 61.343 52.632 15.65 0.00 38.55 4.92
251 252 1.876263 GTTGCCACGTGTTTGTGCC 60.876 57.895 15.65 0.00 38.55 5.01
252 253 0.457681 AAGTTGCCACGTGTTTGTGC 60.458 50.000 15.65 10.75 38.55 4.57
253 254 1.544686 GAAGTTGCCACGTGTTTGTG 58.455 50.000 15.65 0.00 39.60 3.33
254 255 0.098025 CGAAGTTGCCACGTGTTTGT 59.902 50.000 15.65 0.00 0.00 2.83
255 256 0.375454 TCGAAGTTGCCACGTGTTTG 59.625 50.000 15.65 5.80 0.00 2.93
256 257 1.088306 TTCGAAGTTGCCACGTGTTT 58.912 45.000 15.65 0.63 0.00 2.83
257 258 0.375803 GTTCGAAGTTGCCACGTGTT 59.624 50.000 15.65 0.79 0.00 3.32
258 259 0.741574 TGTTCGAAGTTGCCACGTGT 60.742 50.000 15.65 0.00 0.00 4.49
259 260 0.586319 ATGTTCGAAGTTGCCACGTG 59.414 50.000 9.08 9.08 0.00 4.49
260 261 1.305201 AATGTTCGAAGTTGCCACGT 58.695 45.000 0.00 0.00 0.00 4.49
261 262 2.399396 AAATGTTCGAAGTTGCCACG 57.601 45.000 0.00 0.00 0.00 4.94
312 313 6.096846 AGTTTCCATGCTTGACAACTAAAGTT 59.903 34.615 12.06 0.00 39.12 2.66
313 314 5.594317 AGTTTCCATGCTTGACAACTAAAGT 59.406 36.000 12.06 0.00 0.00 2.66
314 315 6.076981 AGTTTCCATGCTTGACAACTAAAG 57.923 37.500 12.06 0.00 0.00 1.85
315 316 6.321181 AGAAGTTTCCATGCTTGACAACTAAA 59.679 34.615 13.35 0.00 29.64 1.85
316 317 5.827797 AGAAGTTTCCATGCTTGACAACTAA 59.172 36.000 13.35 0.00 29.64 2.24
317 318 5.376625 AGAAGTTTCCATGCTTGACAACTA 58.623 37.500 13.35 0.00 29.64 2.24
318 319 4.210331 AGAAGTTTCCATGCTTGACAACT 58.790 39.130 0.22 5.96 30.47 3.16
319 320 4.574599 AGAAGTTTCCATGCTTGACAAC 57.425 40.909 0.22 3.83 0.00 3.32
320 321 5.596836 AAAGAAGTTTCCATGCTTGACAA 57.403 34.783 0.22 0.00 0.00 3.18
321 322 5.591099 GAAAAGAAGTTTCCATGCTTGACA 58.409 37.500 0.22 0.00 39.91 3.58
322 323 4.676924 CGAAAAGAAGTTTCCATGCTTGAC 59.323 41.667 0.22 0.00 42.39 3.18
323 324 4.578516 TCGAAAAGAAGTTTCCATGCTTGA 59.421 37.500 0.22 0.00 42.39 3.02
324 325 4.858935 TCGAAAAGAAGTTTCCATGCTTG 58.141 39.130 0.00 0.00 42.39 4.01
325 326 5.514274 TTCGAAAAGAAGTTTCCATGCTT 57.486 34.783 0.00 0.00 42.39 3.91
337 338 3.634448 TGAAACATGCCCTTCGAAAAGAA 59.366 39.130 0.00 0.00 34.14 2.52
338 339 3.218453 TGAAACATGCCCTTCGAAAAGA 58.782 40.909 0.00 0.00 34.14 2.52
339 340 3.004734 ACTGAAACATGCCCTTCGAAAAG 59.995 43.478 0.00 0.00 0.00 2.27
340 341 2.955660 ACTGAAACATGCCCTTCGAAAA 59.044 40.909 0.00 0.00 0.00 2.29
341 342 2.582052 ACTGAAACATGCCCTTCGAAA 58.418 42.857 0.00 0.00 0.00 3.46
342 343 2.270352 ACTGAAACATGCCCTTCGAA 57.730 45.000 0.00 0.00 0.00 3.71
343 344 2.270352 AACTGAAACATGCCCTTCGA 57.730 45.000 0.00 0.00 0.00 3.71
344 345 4.701956 AATAACTGAAACATGCCCTTCG 57.298 40.909 0.00 0.00 0.00 3.79
345 346 6.147656 CCAAAAATAACTGAAACATGCCCTTC 59.852 38.462 0.00 0.00 0.00 3.46
346 347 5.997129 CCAAAAATAACTGAAACATGCCCTT 59.003 36.000 0.00 0.00 0.00 3.95
347 348 5.306678 TCCAAAAATAACTGAAACATGCCCT 59.693 36.000 0.00 0.00 0.00 5.19
348 349 5.546526 TCCAAAAATAACTGAAACATGCCC 58.453 37.500 0.00 0.00 0.00 5.36
349 350 7.671495 AATCCAAAAATAACTGAAACATGCC 57.329 32.000 0.00 0.00 0.00 4.40
350 351 8.558700 ACAAATCCAAAAATAACTGAAACATGC 58.441 29.630 0.00 0.00 0.00 4.06
377 378 8.956426 ACTAAAGTTGTCATCTGAACAGAAAAA 58.044 29.630 8.59 0.00 41.36 1.94
378 379 8.506168 ACTAAAGTTGTCATCTGAACAGAAAA 57.494 30.769 8.59 0.00 41.36 2.29
379 380 8.506168 AACTAAAGTTGTCATCTGAACAGAAA 57.494 30.769 8.59 0.00 37.68 2.52
408 409 1.814248 GCACTCCCGTCCTGACTTTTT 60.814 52.381 0.00 0.00 0.00 1.94
409 410 0.250338 GCACTCCCGTCCTGACTTTT 60.250 55.000 0.00 0.00 0.00 2.27
410 411 1.122019 AGCACTCCCGTCCTGACTTT 61.122 55.000 0.00 0.00 0.00 2.66
411 412 1.122019 AAGCACTCCCGTCCTGACTT 61.122 55.000 0.00 0.00 0.00 3.01
412 413 1.534235 AAGCACTCCCGTCCTGACT 60.534 57.895 0.00 0.00 0.00 3.41
413 414 1.079750 GAAGCACTCCCGTCCTGAC 60.080 63.158 0.00 0.00 0.00 3.51
414 415 0.904865 ATGAAGCACTCCCGTCCTGA 60.905 55.000 0.00 0.00 0.00 3.86
415 416 0.824109 TATGAAGCACTCCCGTCCTG 59.176 55.000 0.00 0.00 0.00 3.86
416 417 0.824759 GTATGAAGCACTCCCGTCCT 59.175 55.000 0.00 0.00 0.00 3.85
417 418 0.535335 TGTATGAAGCACTCCCGTCC 59.465 55.000 0.00 0.00 0.00 4.79
418 419 2.205074 CATGTATGAAGCACTCCCGTC 58.795 52.381 0.00 0.00 0.00 4.79
419 420 1.555075 ACATGTATGAAGCACTCCCGT 59.445 47.619 0.00 0.00 0.00 5.28
420 421 1.935873 CACATGTATGAAGCACTCCCG 59.064 52.381 0.00 0.00 0.00 5.14
421 422 2.939103 GTCACATGTATGAAGCACTCCC 59.061 50.000 0.00 0.00 0.00 4.30
422 423 3.372206 GTGTCACATGTATGAAGCACTCC 59.628 47.826 0.00 0.00 0.00 3.85
423 424 4.248859 AGTGTCACATGTATGAAGCACTC 58.751 43.478 5.62 0.00 31.28 3.51
424 425 4.277515 AGTGTCACATGTATGAAGCACT 57.722 40.909 5.62 1.11 0.00 4.40
425 426 4.214119 ACAAGTGTCACATGTATGAAGCAC 59.786 41.667 11.99 0.00 27.09 4.40
426 427 4.388485 ACAAGTGTCACATGTATGAAGCA 58.612 39.130 11.99 0.00 27.09 3.91
427 428 4.962693 GACAAGTGTCACATGTATGAAGC 58.037 43.478 13.51 0.00 44.18 3.86
458 459 9.545105 TCATTGATTTAGAAAACACTGCATTTT 57.455 25.926 0.00 0.00 31.96 1.82
459 460 8.981647 GTCATTGATTTAGAAAACACTGCATTT 58.018 29.630 0.00 0.00 0.00 2.32
460 461 8.362639 AGTCATTGATTTAGAAAACACTGCATT 58.637 29.630 0.00 0.00 0.00 3.56
461 462 7.889469 AGTCATTGATTTAGAAAACACTGCAT 58.111 30.769 0.00 0.00 0.00 3.96
462 463 7.275888 AGTCATTGATTTAGAAAACACTGCA 57.724 32.000 0.00 0.00 0.00 4.41
463 464 7.649306 ACAAGTCATTGATTTAGAAAACACTGC 59.351 33.333 0.00 0.00 38.83 4.40
479 480 5.688823 TGCACGAATCTAAACAAGTCATTG 58.311 37.500 0.00 0.00 42.46 2.82
516 517 4.335400 AAATCAACGCCCAATCAGTTTT 57.665 36.364 0.00 0.00 0.00 2.43
521 522 4.021632 TCAATCAAAATCAACGCCCAATCA 60.022 37.500 0.00 0.00 0.00 2.57
766 791 6.272090 AGTTTAATTTGTGGGGTGGAATGAAT 59.728 34.615 0.00 0.00 0.00 2.57
868 1169 1.272490 GGGTGGGCTTTTAAAGAGTGC 59.728 52.381 9.10 0.00 0.00 4.40
903 1205 1.078426 GACCGTGGATTGTGAGGGG 60.078 63.158 0.00 0.00 0.00 4.79
934 1236 1.028330 TAGCTACGTACGTGCAGGCT 61.028 55.000 30.25 28.94 0.00 4.58
1023 1325 2.524394 AGGTGGTGCTCGGTGTCT 60.524 61.111 0.00 0.00 0.00 3.41
1056 1370 4.200283 CCGAGACTGAGCCCGAGC 62.200 72.222 0.00 0.00 40.32 5.03
1118 1432 2.333417 GCAGCAGCAGTCACAGCAT 61.333 57.895 0.00 0.00 41.58 3.79
1166 1480 4.776322 CGGCGCCATTCCAGGACA 62.776 66.667 28.98 0.00 0.00 4.02
1509 1826 1.003233 GGACTGGTCCTTGGACAGC 60.003 63.158 19.90 5.75 46.16 4.40
1659 1976 4.780815 AGCAAATTTAGACGGATGGATGA 58.219 39.130 0.00 0.00 0.00 2.92
1669 1986 3.367025 ACGCACGTAGAGCAAATTTAGAC 59.633 43.478 0.00 0.00 46.65 2.59
1670 1987 3.581755 ACGCACGTAGAGCAAATTTAGA 58.418 40.909 0.00 0.00 46.65 2.10
1671 1988 3.991605 ACGCACGTAGAGCAAATTTAG 57.008 42.857 0.00 0.00 46.65 1.85
1672 1989 3.741856 TCAACGCACGTAGAGCAAATTTA 59.258 39.130 0.00 0.00 46.65 1.40
1673 1990 2.546368 TCAACGCACGTAGAGCAAATTT 59.454 40.909 0.00 0.00 46.65 1.82
2119 2441 4.559153 TGACACATGACATGACACACTAG 58.441 43.478 22.19 4.01 0.00 2.57
2134 2456 5.610398 TCAACTCACTAACACATGACACAT 58.390 37.500 0.00 0.00 0.00 3.21
2161 2491 4.473477 AGTAGCAAGACTGGATGGTAAC 57.527 45.455 0.00 0.00 31.97 2.50
2174 2504 6.491745 TCCTAGATACTCCATCAAGTAGCAAG 59.508 42.308 0.00 0.00 39.93 4.01
2175 2505 6.373759 TCCTAGATACTCCATCAAGTAGCAA 58.626 40.000 0.00 0.00 39.93 3.91
2204 2544 1.766496 GCCCTACAGTTACCATGCCTA 59.234 52.381 0.00 0.00 0.00 3.93
2218 2558 1.001158 CTTAGCGAGCTACTGCCCTAC 60.001 57.143 4.05 0.00 40.80 3.18
2219 2559 1.133884 TCTTAGCGAGCTACTGCCCTA 60.134 52.381 4.05 0.00 40.80 3.53
2220 2560 0.395862 TCTTAGCGAGCTACTGCCCT 60.396 55.000 4.05 0.00 40.80 5.19
2221 2561 0.031449 CTCTTAGCGAGCTACTGCCC 59.969 60.000 4.05 0.00 40.80 5.36
2222 2562 1.025812 TCTCTTAGCGAGCTACTGCC 58.974 55.000 4.05 0.00 39.70 4.85
2223 2563 2.098443 ACTTCTCTTAGCGAGCTACTGC 59.902 50.000 4.05 0.00 39.70 4.40
2224 2564 5.065474 AGTTACTTCTCTTAGCGAGCTACTG 59.935 44.000 4.05 1.62 39.70 2.74
2225 2565 5.187687 AGTTACTTCTCTTAGCGAGCTACT 58.812 41.667 4.05 0.00 39.70 2.57
2226 2566 5.488645 AGTTACTTCTCTTAGCGAGCTAC 57.511 43.478 4.05 0.00 39.70 3.58
2227 2567 5.759273 CCTAGTTACTTCTCTTAGCGAGCTA 59.241 44.000 0.00 0.00 39.70 3.32
2228 2568 4.577283 CCTAGTTACTTCTCTTAGCGAGCT 59.423 45.833 2.25 2.25 39.70 4.09
2229 2569 4.261280 CCCTAGTTACTTCTCTTAGCGAGC 60.261 50.000 0.00 0.00 39.70 5.03
2230 2570 5.124645 TCCCTAGTTACTTCTCTTAGCGAG 58.875 45.833 0.00 0.00 41.30 5.03
2231 2571 5.108187 TCCCTAGTTACTTCTCTTAGCGA 57.892 43.478 0.00 0.00 0.00 4.93
2232 2572 7.690952 ATATCCCTAGTTACTTCTCTTAGCG 57.309 40.000 0.00 0.00 0.00 4.26
2280 2620 6.147821 AGTTCAAACTAGACATGCATGTGTAC 59.852 38.462 35.92 22.96 38.18 2.90
2281 2621 6.230472 AGTTCAAACTAGACATGCATGTGTA 58.770 36.000 35.92 31.91 38.18 2.90
2282 2622 5.065914 AGTTCAAACTAGACATGCATGTGT 58.934 37.500 35.92 32.53 38.18 3.72
2283 2623 5.618056 AGTTCAAACTAGACATGCATGTG 57.382 39.130 35.92 23.33 38.18 3.21
2318 2664 7.419711 TGTTGGGTATAAACAAAAGGAACAA 57.580 32.000 0.00 0.00 34.68 2.83
2340 2686 5.590530 TGAGTACAAGGCAACAAATTTGT 57.409 34.783 18.13 18.13 44.72 2.83
2341 2687 6.515043 CTTGAGTACAAGGCAACAAATTTG 57.485 37.500 16.67 16.67 46.67 2.32
2354 2701 3.758023 CCCATTGCATCACTTGAGTACAA 59.242 43.478 0.00 0.00 34.65 2.41
2358 2705 2.592102 ACCCATTGCATCACTTGAGT 57.408 45.000 0.00 0.00 0.00 3.41
2359 2706 3.256383 TGAAACCCATTGCATCACTTGAG 59.744 43.478 0.00 0.00 0.00 3.02
2360 2707 3.229293 TGAAACCCATTGCATCACTTGA 58.771 40.909 0.00 0.00 0.00 3.02
2380 2727 7.254252 GCTGATTTGTATGCAGAAGTACTACTG 60.254 40.741 0.00 0.00 37.22 2.74
2385 2732 5.582269 TGAGCTGATTTGTATGCAGAAGTAC 59.418 40.000 0.00 0.00 0.00 2.73
2415 2762 5.643348 TCTCATACACTTATGCAACACAAGG 59.357 40.000 0.00 0.00 35.86 3.61
2421 2768 5.998454 ATGCTCTCATACACTTATGCAAC 57.002 39.130 0.00 0.00 35.86 4.17
2422 2769 7.225341 CAGTTATGCTCTCATACACTTATGCAA 59.775 37.037 0.00 0.00 35.86 4.08
2424 2771 6.925718 TCAGTTATGCTCTCATACACTTATGC 59.074 38.462 0.00 0.00 35.86 3.14
2426 2773 7.151308 GCTCAGTTATGCTCTCATACACTTAT 58.849 38.462 0.00 0.00 35.07 1.73
2427 2774 6.096846 TGCTCAGTTATGCTCTCATACACTTA 59.903 38.462 0.00 0.00 35.07 2.24
2428 2775 5.105187 TGCTCAGTTATGCTCTCATACACTT 60.105 40.000 0.00 0.00 35.07 3.16
2430 2777 4.686972 TGCTCAGTTATGCTCTCATACAC 58.313 43.478 0.00 0.00 35.07 2.90
2431 2778 5.343307 TTGCTCAGTTATGCTCTCATACA 57.657 39.130 0.00 0.00 35.07 2.29
2432 2779 4.210955 GCTTGCTCAGTTATGCTCTCATAC 59.789 45.833 0.00 0.00 35.07 2.39
2433 2780 4.100653 AGCTTGCTCAGTTATGCTCTCATA 59.899 41.667 0.00 0.00 34.22 2.15
2434 2781 3.118334 AGCTTGCTCAGTTATGCTCTCAT 60.118 43.478 0.00 0.00 36.73 2.90
2435 2782 2.235650 AGCTTGCTCAGTTATGCTCTCA 59.764 45.455 0.00 0.00 0.00 3.27
2436 2783 2.903798 AGCTTGCTCAGTTATGCTCTC 58.096 47.619 0.00 0.00 0.00 3.20
2437 2784 4.440880 CTTAGCTTGCTCAGTTATGCTCT 58.559 43.478 0.00 0.00 32.72 4.09
2438 2785 3.559242 CCTTAGCTTGCTCAGTTATGCTC 59.441 47.826 0.00 0.00 32.72 4.26
2439 2786 3.054802 ACCTTAGCTTGCTCAGTTATGCT 60.055 43.478 0.00 0.00 34.92 3.79
2440 2787 3.064545 CACCTTAGCTTGCTCAGTTATGC 59.935 47.826 0.00 0.00 0.00 3.14
2441 2788 4.256920 ACACCTTAGCTTGCTCAGTTATG 58.743 43.478 0.00 0.00 0.00 1.90
2442 2789 4.559862 ACACCTTAGCTTGCTCAGTTAT 57.440 40.909 0.00 0.00 0.00 1.89
2443 2790 4.065088 CAACACCTTAGCTTGCTCAGTTA 58.935 43.478 0.00 0.00 0.00 2.24
2444 2791 2.880890 CAACACCTTAGCTTGCTCAGTT 59.119 45.455 0.00 0.00 0.00 3.16
2445 2792 2.158755 ACAACACCTTAGCTTGCTCAGT 60.159 45.455 0.00 0.00 0.00 3.41
2446 2793 2.481952 GACAACACCTTAGCTTGCTCAG 59.518 50.000 0.00 0.00 0.00 3.35
2447 2794 2.104792 AGACAACACCTTAGCTTGCTCA 59.895 45.455 0.00 0.00 0.00 4.26
2448 2795 2.772287 AGACAACACCTTAGCTTGCTC 58.228 47.619 0.00 0.00 0.00 4.26
2449 2796 2.880890 CAAGACAACACCTTAGCTTGCT 59.119 45.455 0.00 0.00 0.00 3.91
2450 2797 2.618709 ACAAGACAACACCTTAGCTTGC 59.381 45.455 0.00 0.00 36.97 4.01
2451 2798 4.096382 ACAACAAGACAACACCTTAGCTTG 59.904 41.667 0.00 0.00 38.81 4.01
2452 2799 4.270008 ACAACAAGACAACACCTTAGCTT 58.730 39.130 0.00 0.00 0.00 3.74
2453 2800 3.886123 ACAACAAGACAACACCTTAGCT 58.114 40.909 0.00 0.00 0.00 3.32
2454 2801 4.573201 TGTACAACAAGACAACACCTTAGC 59.427 41.667 0.00 0.00 0.00 3.09
2455 2802 6.671614 TTGTACAACAAGACAACACCTTAG 57.328 37.500 3.59 0.00 32.34 2.18
2477 2824 1.470098 GATCAAACACATGCCTCGCTT 59.530 47.619 0.00 0.00 0.00 4.68
2480 2827 1.325640 CGAGATCAAACACATGCCTCG 59.674 52.381 0.00 0.00 37.11 4.63
2494 2841 4.263018 TGATCATTGATGTCCCGAGATC 57.737 45.455 3.32 0.00 0.00 2.75
2500 2847 4.646040 TCAACCATTGATCATTGATGTCCC 59.354 41.667 17.21 0.00 34.08 4.46
2513 2860 7.679400 GCGTCTAATCAAATCATCAACCATTGA 60.679 37.037 0.00 0.00 45.01 2.57
2514 2861 6.415867 GCGTCTAATCAAATCATCAACCATTG 59.584 38.462 0.00 0.00 0.00 2.82
2515 2862 6.095300 TGCGTCTAATCAAATCATCAACCATT 59.905 34.615 0.00 0.00 0.00 3.16
2518 2865 5.484173 TGCGTCTAATCAAATCATCAACC 57.516 39.130 0.00 0.00 0.00 3.77
2519 2866 5.453587 GCTTGCGTCTAATCAAATCATCAAC 59.546 40.000 0.00 0.00 0.00 3.18
2520 2867 5.355071 AGCTTGCGTCTAATCAAATCATCAA 59.645 36.000 0.00 0.00 0.00 2.57
2522 2869 5.203370 CAGCTTGCGTCTAATCAAATCATC 58.797 41.667 0.00 0.00 0.00 2.92
2523 2870 4.497006 GCAGCTTGCGTCTAATCAAATCAT 60.497 41.667 0.00 0.00 31.71 2.45
2526 2873 3.411415 GCAGCTTGCGTCTAATCAAAT 57.589 42.857 0.00 0.00 31.71 2.32
2527 2874 2.900122 GCAGCTTGCGTCTAATCAAA 57.100 45.000 0.00 0.00 31.71 2.69
2538 2885 1.168407 TCCACAGTTGAGCAGCTTGC 61.168 55.000 0.00 0.47 45.46 4.01
2541 2888 0.250640 CCTTCCACAGTTGAGCAGCT 60.251 55.000 0.00 0.00 0.00 4.24
2542 2889 0.250467 TCCTTCCACAGTTGAGCAGC 60.250 55.000 0.00 0.00 0.00 5.25
2546 2936 4.034510 GCGATAATTCCTTCCACAGTTGAG 59.965 45.833 0.00 0.00 0.00 3.02
2560 2950 0.163146 GCGTTAGCGGGCGATAATTC 59.837 55.000 0.00 0.00 38.78 2.17
2561 2951 2.231820 GCGTTAGCGGGCGATAATT 58.768 52.632 0.00 0.00 38.78 1.40
2562 2952 3.946907 GCGTTAGCGGGCGATAAT 58.053 55.556 0.00 0.00 38.78 1.28
2576 2966 1.304879 AGAGGAAGGCTCTCTGCGT 60.305 57.895 5.02 0.00 44.05 5.24
2577 2967 3.614806 AGAGGAAGGCTCTCTGCG 58.385 61.111 5.02 0.00 44.05 5.18
2584 2975 2.856760 TATCTGACCAGAGGAAGGCT 57.143 50.000 5.90 0.00 41.33 4.58
2622 3019 5.532779 TCTCATTCTCACGCATCTACTGTAT 59.467 40.000 0.00 0.00 0.00 2.29
2623 3020 4.881850 TCTCATTCTCACGCATCTACTGTA 59.118 41.667 0.00 0.00 0.00 2.74
2624 3021 3.696548 TCTCATTCTCACGCATCTACTGT 59.303 43.478 0.00 0.00 0.00 3.55
2625 3022 4.041049 GTCTCATTCTCACGCATCTACTG 58.959 47.826 0.00 0.00 0.00 2.74
2626 3023 3.696548 TGTCTCATTCTCACGCATCTACT 59.303 43.478 0.00 0.00 0.00 2.57
2627 3024 4.033990 TGTCTCATTCTCACGCATCTAC 57.966 45.455 0.00 0.00 0.00 2.59
2721 3147 2.540931 TGTTGTTAAGAACGAACGCCTC 59.459 45.455 10.55 0.00 0.00 4.70
2723 3152 3.285745 CTTGTTGTTAAGAACGAACGCC 58.714 45.455 10.55 0.00 0.00 5.68
2752 3181 9.807386 CGTTTTCTTTTCTTCTTACGAATATGT 57.193 29.630 0.00 0.00 0.00 2.29
2831 3266 2.678190 GCCTCGCACCACTCTTATCTTT 60.678 50.000 0.00 0.00 0.00 2.52
2871 3316 1.282570 CGTGTGACTGGCGCATTTT 59.717 52.632 10.83 0.00 39.56 1.82
2903 3348 2.813179 GATGGGCGACGCATGTCAC 61.813 63.158 23.09 2.24 45.80 3.67
2930 3375 4.293648 CGGTCCACGTCCTGCACA 62.294 66.667 0.00 0.00 37.93 4.57
2990 3435 8.088981 AGCGTTTAGTGGAGTATAATAAGATGG 58.911 37.037 0.00 0.00 0.00 3.51
3008 3453 5.163814 ACTCGTAGTACTTACCAGCGTTTAG 60.164 44.000 0.00 0.00 0.00 1.85
3014 3459 5.747951 ATACACTCGTAGTACTTACCAGC 57.252 43.478 0.00 0.00 0.00 4.85
3021 3470 8.187913 TGGATACTCTATACACTCGTAGTACT 57.812 38.462 0.00 0.00 37.61 2.73
3022 3471 9.434420 AATGGATACTCTATACACTCGTAGTAC 57.566 37.037 0.00 0.00 30.33 2.73
3026 3475 9.783081 TGTTAATGGATACTCTATACACTCGTA 57.217 33.333 0.00 0.00 30.33 3.43
3027 3476 8.687292 TGTTAATGGATACTCTATACACTCGT 57.313 34.615 0.00 0.00 30.33 4.18
3039 3488 6.154021 ACGTACTTCACCTGTTAATGGATACT 59.846 38.462 4.73 0.00 37.61 2.12
3040 3489 6.255020 CACGTACTTCACCTGTTAATGGATAC 59.745 42.308 4.73 0.00 0.00 2.24
3044 3501 4.312443 ACACGTACTTCACCTGTTAATGG 58.688 43.478 0.00 0.00 0.00 3.16
3053 3510 6.903419 ACTAAGTTAGTACACGTACTTCACC 58.097 40.000 14.00 2.20 43.35 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.