Multiple sequence alignment - TraesCS1D01G220700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G220700 chr1D 100.000 3652 0 0 1 3652 308426256 308422605 0.000000e+00 6745
1 TraesCS1D01G220700 chr1D 89.504 343 29 4 8 345 427038403 427038743 9.370000e-116 427
2 TraesCS1D01G220700 chr1A 92.646 3005 146 35 337 3298 387814168 387811196 0.000000e+00 4255
3 TraesCS1D01G220700 chr1A 93.706 286 18 0 3359 3644 387811070 387810785 2.610000e-116 429
4 TraesCS1D01G220700 chr1B 92.713 2964 118 35 727 3644 418052902 418049991 0.000000e+00 4187
5 TraesCS1D01G220700 chr2D 89.356 357 21 9 1 345 179291550 179291901 2.010000e-117 433
6 TraesCS1D01G220700 chr7D 88.663 344 28 6 8 344 572579562 572579223 3.390000e-110 409
7 TraesCS1D01G220700 chr7D 89.153 295 20 6 8 294 46831131 46831421 1.250000e-94 357
8 TraesCS1D01G220700 chr7D 88.189 127 9 3 225 345 382531393 382531519 2.940000e-31 147
9 TraesCS1D01G220700 chr6D 88.081 344 33 3 8 345 445609062 445608721 5.680000e-108 401
10 TraesCS1D01G220700 chr6D 96.087 230 7 2 8 237 115552579 115552352 1.240000e-99 374
11 TraesCS1D01G220700 chr3D 96.507 229 5 3 8 236 552723606 552723381 3.440000e-100 375
12 TraesCS1D01G220700 chr4A 86.471 340 39 2 8 341 446083471 446083133 2.070000e-97 366
13 TraesCS1D01G220700 chr5D 88.851 296 25 3 8 296 528691282 528691576 1.250000e-94 357
14 TraesCS1D01G220700 chr2B 86.017 236 20 9 8 237 44939613 44939841 1.310000e-59 241


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G220700 chr1D 308422605 308426256 3651 True 6745 6745 100.000 1 3652 1 chr1D.!!$R1 3651
1 TraesCS1D01G220700 chr1A 387810785 387814168 3383 True 2342 4255 93.176 337 3644 2 chr1A.!!$R1 3307
2 TraesCS1D01G220700 chr1B 418049991 418052902 2911 True 4187 4187 92.713 727 3644 1 chr1B.!!$R1 2917

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
306 307 0.167251 GCGCGGCAAAGTAGCTTTTA 59.833 50.0 8.83 0.0 30.60 1.52 F
342 343 0.250901 ACGGCTGTTGGAGATGCTTT 60.251 50.0 0.00 0.0 0.00 3.51 F
684 692 0.670546 ATGACCTGCGTCCGTTTCTG 60.671 55.0 0.00 0.0 38.32 3.02 F
2017 2035 0.671472 CTGCAGGATCACAGCACGAA 60.671 55.0 5.57 0.0 34.13 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2052 2070 0.514691 CTGTTGAAGCTCTGCGAACC 59.485 55.000 0.0 0.0 0.00 3.62 R
2249 2270 1.473965 GGCTCTTCTGATCCATGCGAA 60.474 52.381 0.0 0.0 0.00 4.70 R
2450 2471 0.961358 CCTCGTTCTCGTCCACCTCT 60.961 60.000 0.0 0.0 38.33 3.69 R
3160 3217 0.108233 GGGTACGTTCGGTATGGCAA 60.108 55.000 0.0 0.0 32.74 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.723322 TCGGAGGAAGATAAGGACGA 57.277 50.000 0.00 0.00 0.00 4.20
21 22 2.295885 TCGGAGGAAGATAAGGACGAC 58.704 52.381 0.00 0.00 0.00 4.34
22 23 1.002684 CGGAGGAAGATAAGGACGACG 60.003 57.143 0.00 0.00 0.00 5.12
23 24 2.295885 GGAGGAAGATAAGGACGACGA 58.704 52.381 0.00 0.00 0.00 4.20
24 25 2.033174 GGAGGAAGATAAGGACGACGAC 59.967 54.545 0.00 0.00 0.00 4.34
25 26 1.669779 AGGAAGATAAGGACGACGACG 59.330 52.381 5.58 5.58 45.75 5.12
26 27 1.667724 GGAAGATAAGGACGACGACGA 59.332 52.381 15.32 0.00 42.66 4.20
27 28 2.286301 GGAAGATAAGGACGACGACGAG 60.286 54.545 15.32 0.00 42.66 4.18
28 29 1.297664 AGATAAGGACGACGACGAGG 58.702 55.000 15.32 0.00 42.66 4.63
29 30 1.134580 AGATAAGGACGACGACGAGGA 60.135 52.381 15.32 0.00 42.66 3.71
30 31 1.872313 GATAAGGACGACGACGAGGAT 59.128 52.381 15.32 0.00 42.66 3.24
31 32 1.012086 TAAGGACGACGACGAGGATG 58.988 55.000 15.32 0.00 42.66 3.51
32 33 0.675837 AAGGACGACGACGAGGATGA 60.676 55.000 15.32 0.00 42.66 2.92
33 34 1.090625 AGGACGACGACGAGGATGAG 61.091 60.000 15.32 0.00 42.66 2.90
34 35 1.297745 GACGACGACGAGGATGAGC 60.298 63.158 15.32 0.00 42.66 4.26
35 36 2.024871 CGACGACGAGGATGAGCC 59.975 66.667 0.00 0.00 42.66 4.70
46 47 2.706339 GGATGAGCCTTGATGTGTCT 57.294 50.000 0.00 0.00 0.00 3.41
47 48 2.996631 GGATGAGCCTTGATGTGTCTT 58.003 47.619 0.00 0.00 0.00 3.01
48 49 3.350833 GGATGAGCCTTGATGTGTCTTT 58.649 45.455 0.00 0.00 0.00 2.52
49 50 3.376546 GGATGAGCCTTGATGTGTCTTTC 59.623 47.826 0.00 0.00 0.00 2.62
50 51 2.416747 TGAGCCTTGATGTGTCTTTCG 58.583 47.619 0.00 0.00 0.00 3.46
51 52 2.224281 TGAGCCTTGATGTGTCTTTCGT 60.224 45.455 0.00 0.00 0.00 3.85
52 53 2.808543 GAGCCTTGATGTGTCTTTCGTT 59.191 45.455 0.00 0.00 0.00 3.85
53 54 3.214328 AGCCTTGATGTGTCTTTCGTTT 58.786 40.909 0.00 0.00 0.00 3.60
54 55 3.003689 AGCCTTGATGTGTCTTTCGTTTG 59.996 43.478 0.00 0.00 0.00 2.93
55 56 3.243068 GCCTTGATGTGTCTTTCGTTTGT 60.243 43.478 0.00 0.00 0.00 2.83
56 57 4.282068 CCTTGATGTGTCTTTCGTTTGTG 58.718 43.478 0.00 0.00 0.00 3.33
57 58 4.201910 CCTTGATGTGTCTTTCGTTTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
58 59 4.530094 TGATGTGTCTTTCGTTTGTGTC 57.470 40.909 0.00 0.00 0.00 3.67
59 60 3.935828 TGATGTGTCTTTCGTTTGTGTCA 59.064 39.130 0.00 0.00 0.00 3.58
60 61 4.574421 TGATGTGTCTTTCGTTTGTGTCAT 59.426 37.500 0.00 0.00 0.00 3.06
61 62 4.271590 TGTGTCTTTCGTTTGTGTCATG 57.728 40.909 0.00 0.00 0.00 3.07
62 63 3.935828 TGTGTCTTTCGTTTGTGTCATGA 59.064 39.130 0.00 0.00 0.00 3.07
63 64 4.393371 TGTGTCTTTCGTTTGTGTCATGAA 59.607 37.500 0.00 0.00 0.00 2.57
64 65 4.728608 GTGTCTTTCGTTTGTGTCATGAAC 59.271 41.667 0.00 0.00 0.00 3.18
65 66 4.634004 TGTCTTTCGTTTGTGTCATGAACT 59.366 37.500 0.00 0.00 0.00 3.01
66 67 5.123186 TGTCTTTCGTTTGTGTCATGAACTT 59.877 36.000 0.00 0.00 0.00 2.66
67 68 5.452302 GTCTTTCGTTTGTGTCATGAACTTG 59.548 40.000 0.00 0.00 0.00 3.16
68 69 3.961477 TCGTTTGTGTCATGAACTTGG 57.039 42.857 0.00 0.00 0.00 3.61
69 70 3.275143 TCGTTTGTGTCATGAACTTGGT 58.725 40.909 0.00 0.00 0.00 3.67
70 71 3.692101 TCGTTTGTGTCATGAACTTGGTT 59.308 39.130 0.00 0.00 0.00 3.67
71 72 4.156922 TCGTTTGTGTCATGAACTTGGTTT 59.843 37.500 0.00 0.00 0.00 3.27
72 73 4.265085 CGTTTGTGTCATGAACTTGGTTTG 59.735 41.667 0.00 0.00 0.00 2.93
73 74 3.435105 TGTGTCATGAACTTGGTTTGC 57.565 42.857 0.00 0.00 0.00 3.68
74 75 2.757314 TGTGTCATGAACTTGGTTTGCA 59.243 40.909 0.00 0.00 0.00 4.08
75 76 3.384146 TGTGTCATGAACTTGGTTTGCAT 59.616 39.130 0.00 0.00 0.00 3.96
76 77 4.141981 TGTGTCATGAACTTGGTTTGCATT 60.142 37.500 0.00 0.00 0.00 3.56
77 78 4.810491 GTGTCATGAACTTGGTTTGCATTT 59.190 37.500 0.00 0.00 0.00 2.32
78 79 5.294060 GTGTCATGAACTTGGTTTGCATTTT 59.706 36.000 0.00 0.00 0.00 1.82
79 80 5.293814 TGTCATGAACTTGGTTTGCATTTTG 59.706 36.000 0.00 0.00 0.00 2.44
80 81 5.523188 GTCATGAACTTGGTTTGCATTTTGA 59.477 36.000 0.00 0.00 0.00 2.69
81 82 6.036953 GTCATGAACTTGGTTTGCATTTTGAA 59.963 34.615 0.00 0.00 0.00 2.69
82 83 5.793026 TGAACTTGGTTTGCATTTTGAAC 57.207 34.783 0.00 0.00 0.00 3.18
83 84 5.486526 TGAACTTGGTTTGCATTTTGAACT 58.513 33.333 0.00 0.00 0.00 3.01
84 85 5.936956 TGAACTTGGTTTGCATTTTGAACTT 59.063 32.000 0.00 0.00 0.00 2.66
85 86 5.799681 ACTTGGTTTGCATTTTGAACTTG 57.200 34.783 0.00 0.00 0.00 3.16
86 87 4.635324 ACTTGGTTTGCATTTTGAACTTGG 59.365 37.500 0.00 0.00 0.00 3.61
87 88 4.213564 TGGTTTGCATTTTGAACTTGGT 57.786 36.364 0.00 0.00 0.00 3.67
88 89 4.583871 TGGTTTGCATTTTGAACTTGGTT 58.416 34.783 0.00 0.00 0.00 3.67
89 90 4.394300 TGGTTTGCATTTTGAACTTGGTTG 59.606 37.500 0.00 0.00 0.00 3.77
90 91 4.201901 GGTTTGCATTTTGAACTTGGTTGG 60.202 41.667 0.00 0.00 0.00 3.77
91 92 4.478206 TTGCATTTTGAACTTGGTTGGA 57.522 36.364 0.00 0.00 0.00 3.53
92 93 4.686191 TGCATTTTGAACTTGGTTGGAT 57.314 36.364 0.00 0.00 0.00 3.41
93 94 4.378774 TGCATTTTGAACTTGGTTGGATG 58.621 39.130 0.00 0.00 0.00 3.51
94 95 4.100653 TGCATTTTGAACTTGGTTGGATGA 59.899 37.500 0.00 0.00 0.00 2.92
95 96 5.055812 GCATTTTGAACTTGGTTGGATGAA 58.944 37.500 0.00 0.00 0.00 2.57
96 97 5.050159 GCATTTTGAACTTGGTTGGATGAAC 60.050 40.000 0.00 0.00 0.00 3.18
97 98 5.930837 TTTTGAACTTGGTTGGATGAACT 57.069 34.783 0.00 0.00 34.66 3.01
98 99 5.930837 TTTGAACTTGGTTGGATGAACTT 57.069 34.783 0.00 0.00 34.66 2.66
99 100 7.411486 TTTTGAACTTGGTTGGATGAACTTA 57.589 32.000 0.00 0.00 34.66 2.24
100 101 7.595819 TTTGAACTTGGTTGGATGAACTTAT 57.404 32.000 0.00 0.00 34.66 1.73
101 102 6.573664 TGAACTTGGTTGGATGAACTTATG 57.426 37.500 0.00 0.00 34.66 1.90
102 103 5.476599 TGAACTTGGTTGGATGAACTTATGG 59.523 40.000 0.00 0.00 34.66 2.74
103 104 4.344104 ACTTGGTTGGATGAACTTATGGG 58.656 43.478 0.00 0.00 34.66 4.00
104 105 2.733956 TGGTTGGATGAACTTATGGGC 58.266 47.619 0.00 0.00 34.66 5.36
105 106 2.042297 TGGTTGGATGAACTTATGGGCA 59.958 45.455 0.00 0.00 34.66 5.36
106 107 3.299503 GGTTGGATGAACTTATGGGCAT 58.700 45.455 0.00 0.00 34.66 4.40
107 108 3.068590 GGTTGGATGAACTTATGGGCATG 59.931 47.826 0.00 0.00 34.66 4.06
108 109 3.949586 TGGATGAACTTATGGGCATGA 57.050 42.857 0.00 0.00 0.00 3.07
109 110 4.248174 TGGATGAACTTATGGGCATGAA 57.752 40.909 0.00 0.00 0.00 2.57
110 111 3.953612 TGGATGAACTTATGGGCATGAAC 59.046 43.478 0.00 0.00 0.00 3.18
111 112 4.210331 GGATGAACTTATGGGCATGAACT 58.790 43.478 0.00 0.00 0.00 3.01
112 113 4.646492 GGATGAACTTATGGGCATGAACTT 59.354 41.667 0.00 0.00 0.00 2.66
113 114 5.127682 GGATGAACTTATGGGCATGAACTTT 59.872 40.000 0.00 0.00 0.00 2.66
114 115 6.351286 GGATGAACTTATGGGCATGAACTTTT 60.351 38.462 0.00 0.00 0.00 2.27
115 116 7.147915 GGATGAACTTATGGGCATGAACTTTTA 60.148 37.037 0.00 0.00 0.00 1.52
116 117 7.716799 TGAACTTATGGGCATGAACTTTTAT 57.283 32.000 0.00 0.00 0.00 1.40
117 118 8.133024 TGAACTTATGGGCATGAACTTTTATT 57.867 30.769 0.00 0.00 0.00 1.40
118 119 8.250332 TGAACTTATGGGCATGAACTTTTATTC 58.750 33.333 0.00 0.00 0.00 1.75
119 120 7.716799 ACTTATGGGCATGAACTTTTATTCA 57.283 32.000 0.00 0.00 42.62 2.57
121 122 8.416329 ACTTATGGGCATGAACTTTTATTCATC 58.584 33.333 0.00 0.00 44.30 2.92
122 123 6.795144 ATGGGCATGAACTTTTATTCATCA 57.205 33.333 0.00 0.00 44.30 3.07
123 124 6.602410 TGGGCATGAACTTTTATTCATCAA 57.398 33.333 0.00 0.00 44.30 2.57
124 125 6.397272 TGGGCATGAACTTTTATTCATCAAC 58.603 36.000 0.00 0.00 44.30 3.18
125 126 6.211184 TGGGCATGAACTTTTATTCATCAACT 59.789 34.615 0.00 0.00 44.30 3.16
126 127 7.099120 GGGCATGAACTTTTATTCATCAACTT 58.901 34.615 0.00 0.00 44.30 2.66
127 128 7.063780 GGGCATGAACTTTTATTCATCAACTTG 59.936 37.037 0.00 0.00 44.30 3.16
128 129 7.599998 GGCATGAACTTTTATTCATCAACTTGT 59.400 33.333 0.00 0.00 44.30 3.16
129 130 8.981647 GCATGAACTTTTATTCATCAACTTGTT 58.018 29.630 0.00 0.00 44.30 2.83
132 133 9.868277 TGAACTTTTATTCATCAACTTGTTTGT 57.132 25.926 0.00 0.00 33.77 2.83
134 135 9.651913 AACTTTTATTCATCAACTTGTTTGTGT 57.348 25.926 0.00 0.00 36.49 3.72
135 136 9.086336 ACTTTTATTCATCAACTTGTTTGTGTG 57.914 29.630 0.00 0.00 36.49 3.82
136 137 9.299963 CTTTTATTCATCAACTTGTTTGTGTGA 57.700 29.630 0.00 0.00 36.49 3.58
137 138 9.645059 TTTTATTCATCAACTTGTTTGTGTGAA 57.355 25.926 8.75 8.75 41.10 3.18
138 139 9.645059 TTTATTCATCAACTTGTTTGTGTGAAA 57.355 25.926 9.74 0.00 40.68 2.69
139 140 9.814899 TTATTCATCAACTTGTTTGTGTGAAAT 57.185 25.926 9.74 0.00 40.68 2.17
140 141 8.721019 ATTCATCAACTTGTTTGTGTGAAATT 57.279 26.923 9.74 0.00 40.68 1.82
141 142 9.814899 ATTCATCAACTTGTTTGTGTGAAATTA 57.185 25.926 9.74 0.00 40.68 1.40
142 143 9.814899 TTCATCAACTTGTTTGTGTGAAATTAT 57.185 25.926 0.00 0.00 37.66 1.28
156 157 9.964303 TGTGTGAAATTATATTATGCCATGTTC 57.036 29.630 0.00 0.00 0.00 3.18
157 158 9.964303 GTGTGAAATTATATTATGCCATGTTCA 57.036 29.630 0.00 0.00 0.00 3.18
162 163 9.999660 AAATTATATTATGCCATGTTCATTGCA 57.000 25.926 12.58 12.58 38.23 4.08
165 166 9.999660 TTATATTATGCCATGTTCATTGCATTT 57.000 25.926 22.67 15.59 41.40 2.32
166 167 8.911918 ATATTATGCCATGTTCATTGCATTTT 57.088 26.923 22.67 15.35 41.40 1.82
167 168 4.955925 ATGCCATGTTCATTGCATTTTG 57.044 36.364 15.41 0.00 41.40 2.44
168 169 4.004196 TGCCATGTTCATTGCATTTTGA 57.996 36.364 7.33 0.00 0.00 2.69
169 170 4.386711 TGCCATGTTCATTGCATTTTGAA 58.613 34.783 7.33 0.00 0.00 2.69
170 171 5.004448 TGCCATGTTCATTGCATTTTGAAT 58.996 33.333 7.33 0.00 34.60 2.57
171 172 5.106515 TGCCATGTTCATTGCATTTTGAATG 60.107 36.000 7.33 0.00 34.60 2.67
172 173 5.106475 GCCATGTTCATTGCATTTTGAATGT 60.106 36.000 9.58 1.69 34.60 2.71
173 174 6.568844 GCCATGTTCATTGCATTTTGAATGTT 60.569 34.615 9.58 0.00 34.60 2.71
174 175 7.364200 CCATGTTCATTGCATTTTGAATGTTT 58.636 30.769 9.58 0.00 34.60 2.83
175 176 7.324856 CCATGTTCATTGCATTTTGAATGTTTG 59.675 33.333 9.58 6.39 34.60 2.93
176 177 7.549615 TGTTCATTGCATTTTGAATGTTTGA 57.450 28.000 9.58 1.93 34.60 2.69
177 178 7.982224 TGTTCATTGCATTTTGAATGTTTGAA 58.018 26.923 9.58 6.70 34.60 2.69
178 179 8.456471 TGTTCATTGCATTTTGAATGTTTGAAA 58.544 25.926 9.58 0.00 34.60 2.69
179 180 9.453325 GTTCATTGCATTTTGAATGTTTGAAAT 57.547 25.926 9.58 0.00 34.60 2.17
180 181 9.666626 TTCATTGCATTTTGAATGTTTGAAATC 57.333 25.926 0.00 0.00 32.40 2.17
181 182 8.291032 TCATTGCATTTTGAATGTTTGAAATCC 58.709 29.630 0.00 0.00 32.40 3.01
182 183 7.563888 TTGCATTTTGAATGTTTGAAATCCA 57.436 28.000 0.00 0.00 0.00 3.41
183 184 7.747155 TGCATTTTGAATGTTTGAAATCCAT 57.253 28.000 2.97 0.00 0.00 3.41
184 185 8.167605 TGCATTTTGAATGTTTGAAATCCATT 57.832 26.923 2.97 0.00 0.00 3.16
185 186 8.630917 TGCATTTTGAATGTTTGAAATCCATTT 58.369 25.926 2.97 0.00 0.00 2.32
186 187 9.465985 GCATTTTGAATGTTTGAAATCCATTTT 57.534 25.926 2.97 0.00 0.00 1.82
189 190 9.784680 TTTTGAATGTTTGAAATCCATTTTGTG 57.215 25.926 0.00 0.00 0.00 3.33
190 191 8.503458 TTGAATGTTTGAAATCCATTTTGTGT 57.497 26.923 0.00 0.00 0.00 3.72
191 192 8.140677 TGAATGTTTGAAATCCATTTTGTGTC 57.859 30.769 0.00 0.00 0.00 3.67
192 193 7.226325 TGAATGTTTGAAATCCATTTTGTGTCC 59.774 33.333 0.00 0.00 0.00 4.02
193 194 5.982356 TGTTTGAAATCCATTTTGTGTCCA 58.018 33.333 0.00 0.00 0.00 4.02
194 195 6.409704 TGTTTGAAATCCATTTTGTGTCCAA 58.590 32.000 0.00 0.00 0.00 3.53
195 196 6.881065 TGTTTGAAATCCATTTTGTGTCCAAA 59.119 30.769 0.00 0.00 38.77 3.28
207 208 6.782298 TTTGTGTCCAAAATGCAACATATG 57.218 33.333 0.00 0.00 37.62 1.78
208 209 4.818642 TGTGTCCAAAATGCAACATATGG 58.181 39.130 7.80 0.00 0.00 2.74
209 210 3.618150 GTGTCCAAAATGCAACATATGGC 59.382 43.478 7.80 2.22 0.00 4.40
210 211 3.260128 TGTCCAAAATGCAACATATGGCA 59.740 39.130 7.80 8.36 45.23 4.92
215 216 1.066093 TGCAACATATGGCATGCGC 59.934 52.632 12.44 0.00 41.61 6.09
303 304 3.788766 CGCGCGGCAAAGTAGCTT 61.789 61.111 24.84 0.00 34.17 3.74
304 305 2.561373 GCGCGGCAAAGTAGCTTT 59.439 55.556 8.83 0.00 33.58 3.51
305 306 1.081442 GCGCGGCAAAGTAGCTTTT 60.081 52.632 8.83 0.00 30.60 2.27
306 307 0.167251 GCGCGGCAAAGTAGCTTTTA 59.833 50.000 8.83 0.00 30.60 1.52
307 308 1.400500 GCGCGGCAAAGTAGCTTTTAA 60.400 47.619 8.83 0.00 30.60 1.52
308 309 2.239201 CGCGGCAAAGTAGCTTTTAAC 58.761 47.619 0.00 0.00 30.60 2.01
309 310 2.239201 GCGGCAAAGTAGCTTTTAACG 58.761 47.619 0.00 0.00 30.60 3.18
310 311 2.239201 CGGCAAAGTAGCTTTTAACGC 58.761 47.619 0.00 0.00 30.60 4.84
311 312 2.239201 GGCAAAGTAGCTTTTAACGCG 58.761 47.619 3.53 3.53 30.60 6.01
312 313 1.642360 GCAAAGTAGCTTTTAACGCGC 59.358 47.619 5.73 0.00 30.60 6.86
313 314 1.896193 CAAAGTAGCTTTTAACGCGCG 59.104 47.619 30.96 30.96 30.60 6.86
314 315 0.441145 AAGTAGCTTTTAACGCGCGG 59.559 50.000 35.22 16.19 0.00 6.46
315 316 1.579374 GTAGCTTTTAACGCGCGGC 60.579 57.895 35.22 25.37 0.00 6.53
332 333 2.631428 CGTGTTGGACGGCTGTTG 59.369 61.111 0.00 0.00 44.85 3.33
333 334 2.892334 CGTGTTGGACGGCTGTTGG 61.892 63.158 0.00 0.00 44.85 3.77
334 335 1.525077 GTGTTGGACGGCTGTTGGA 60.525 57.895 0.00 0.00 0.00 3.53
335 336 1.227823 TGTTGGACGGCTGTTGGAG 60.228 57.895 0.00 0.00 0.00 3.86
336 337 1.070786 GTTGGACGGCTGTTGGAGA 59.929 57.895 0.00 0.00 0.00 3.71
337 338 0.321653 GTTGGACGGCTGTTGGAGAT 60.322 55.000 0.00 0.00 0.00 2.75
338 339 0.321564 TTGGACGGCTGTTGGAGATG 60.322 55.000 0.00 0.00 0.00 2.90
339 340 2.109126 GGACGGCTGTTGGAGATGC 61.109 63.158 0.00 0.00 0.00 3.91
340 341 1.078848 GACGGCTGTTGGAGATGCT 60.079 57.895 0.00 0.00 0.00 3.79
341 342 0.674895 GACGGCTGTTGGAGATGCTT 60.675 55.000 0.00 0.00 0.00 3.91
342 343 0.250901 ACGGCTGTTGGAGATGCTTT 60.251 50.000 0.00 0.00 0.00 3.51
343 344 1.003118 ACGGCTGTTGGAGATGCTTTA 59.997 47.619 0.00 0.00 0.00 1.85
359 360 9.144747 GAGATGCTTTAATGCGAAGAGATATTA 57.855 33.333 8.62 0.00 35.36 0.98
364 365 7.965107 GCTTTAATGCGAAGAGATATTATTGGG 59.035 37.037 0.00 0.00 0.00 4.12
383 384 2.014857 GGAGATAGTTTTGGGCGTTCC 58.985 52.381 0.00 0.00 0.00 3.62
399 400 4.537015 GCGTTCCAATATAATGCAACCTC 58.463 43.478 0.00 0.00 38.47 3.85
413 414 2.383855 CAACCTCCAAAACCCTCACAA 58.616 47.619 0.00 0.00 0.00 3.33
417 418 3.450817 ACCTCCAAAACCCTCACAAAAAG 59.549 43.478 0.00 0.00 0.00 2.27
418 419 3.450817 CCTCCAAAACCCTCACAAAAAGT 59.549 43.478 0.00 0.00 0.00 2.66
419 420 4.081142 CCTCCAAAACCCTCACAAAAAGTT 60.081 41.667 0.00 0.00 0.00 2.66
430 431 5.474876 CCTCACAAAAAGTTTGGAGCTAGAT 59.525 40.000 5.76 0.00 0.00 1.98
454 455 6.928979 TGTGAGAACGGATTTTTGAAGTTA 57.071 33.333 0.00 0.00 0.00 2.24
473 475 7.230913 TGAAGTTAATTTTGGGGTTCGATTACA 59.769 33.333 0.00 0.00 0.00 2.41
474 476 7.527568 AGTTAATTTTGGGGTTCGATTACAA 57.472 32.000 0.00 0.00 0.00 2.41
479 481 3.080300 TGGGGTTCGATTACAAATGCT 57.920 42.857 0.00 0.00 0.00 3.79
488 490 4.565166 TCGATTACAAATGCTCTTACACCG 59.435 41.667 0.00 0.00 0.00 4.94
497 499 9.424319 ACAAATGCTCTTACACCGATATTATAG 57.576 33.333 0.00 0.00 0.00 1.31
498 500 8.873830 CAAATGCTCTTACACCGATATTATAGG 58.126 37.037 1.61 1.61 0.00 2.57
499 501 7.956328 ATGCTCTTACACCGATATTATAGGA 57.044 36.000 9.53 0.00 0.00 2.94
500 502 7.154435 TGCTCTTACACCGATATTATAGGAC 57.846 40.000 9.53 0.00 0.00 3.85
503 505 7.309012 GCTCTTACACCGATATTATAGGACACA 60.309 40.741 9.53 0.00 0.00 3.72
512 514 9.706691 CCGATATTATAGGACACACTTTAATGT 57.293 33.333 0.00 0.00 30.65 2.71
551 553 6.168389 TGATCATATCATGCATAAGCGAACT 58.832 36.000 0.00 0.00 37.78 3.01
578 580 4.004196 TCTCAATATCAGCTGCATCAGG 57.996 45.455 9.47 0.00 31.21 3.86
579 581 3.644738 TCTCAATATCAGCTGCATCAGGA 59.355 43.478 9.47 1.34 31.21 3.86
620 622 9.906660 TCATAAACATGCTAAGATTTTCGTTTT 57.093 25.926 0.00 0.00 0.00 2.43
626 628 6.490566 TGCTAAGATTTTCGTTTTCTACCC 57.509 37.500 0.00 0.00 0.00 3.69
627 629 5.998981 TGCTAAGATTTTCGTTTTCTACCCA 59.001 36.000 0.00 0.00 0.00 4.51
629 631 6.148976 GCTAAGATTTTCGTTTTCTACCCACT 59.851 38.462 0.00 0.00 0.00 4.00
630 632 7.332678 GCTAAGATTTTCGTTTTCTACCCACTA 59.667 37.037 0.00 0.00 0.00 2.74
631 633 7.430992 AAGATTTTCGTTTTCTACCCACTAC 57.569 36.000 0.00 0.00 0.00 2.73
632 634 6.527423 AGATTTTCGTTTTCTACCCACTACA 58.473 36.000 0.00 0.00 0.00 2.74
633 635 7.166167 AGATTTTCGTTTTCTACCCACTACAT 58.834 34.615 0.00 0.00 0.00 2.29
634 636 6.548441 TTTTCGTTTTCTACCCACTACATG 57.452 37.500 0.00 0.00 0.00 3.21
635 637 5.471556 TTCGTTTTCTACCCACTACATGA 57.528 39.130 0.00 0.00 0.00 3.07
636 638 5.670792 TCGTTTTCTACCCACTACATGAT 57.329 39.130 0.00 0.00 0.00 2.45
645 653 2.804527 CCCACTACATGATCTGCGAATG 59.195 50.000 0.00 0.00 0.00 2.67
649 657 5.347093 CCACTACATGATCTGCGAATGTATC 59.653 44.000 0.00 0.00 36.48 2.24
660 668 1.657260 CGAATGTATCGCAACATGCCG 60.657 52.381 3.61 6.83 45.89 5.69
684 692 0.670546 ATGACCTGCGTCCGTTTCTG 60.671 55.000 0.00 0.00 38.32 3.02
876 884 4.342951 TCGAACTACCAAGGAAGAACAAGA 59.657 41.667 0.00 0.00 0.00 3.02
1014 1030 4.008933 GCCACCACCACGAGCTCT 62.009 66.667 12.85 0.00 0.00 4.09
1015 1031 2.262915 CCACCACCACGAGCTCTC 59.737 66.667 12.85 0.00 0.00 3.20
1079 1097 1.524008 AAAGCTTTAAAGGGCGCGCT 61.524 50.000 32.29 22.73 0.00 5.92
1325 1343 2.962569 CACCTGCTCTTCGTCGGA 59.037 61.111 0.00 0.00 0.00 4.55
1817 1835 2.104331 GCGTCGTCCATGTCCGAT 59.896 61.111 7.15 0.00 35.30 4.18
1954 1972 1.841277 TGTTCACAGTTACCACCCTGT 59.159 47.619 0.00 0.00 42.47 4.00
2015 2033 3.482809 CTGCAGGATCACAGCACG 58.517 61.111 5.57 0.00 34.13 5.34
2017 2035 0.671472 CTGCAGGATCACAGCACGAA 60.671 55.000 5.57 0.00 34.13 3.85
2033 2051 1.480137 ACGAAAGGCAGAGGAGATCAG 59.520 52.381 0.00 0.00 0.00 2.90
2052 2070 0.811616 GGACCATTACTCGCAGCAGG 60.812 60.000 0.00 0.00 0.00 4.85
2078 2096 2.096516 GCAGAGCTTCAACAGTTCTTCG 60.097 50.000 0.00 0.00 40.03 3.79
2223 2244 1.140052 TCCAAGAAGTGCCTGACGAAA 59.860 47.619 0.00 0.00 0.00 3.46
2241 2262 2.476534 AAACGAAGCCGGCAATGCAG 62.477 55.000 31.54 15.48 40.78 4.41
2249 2270 1.889105 CGGCAATGCAGCGGATAGT 60.889 57.895 7.79 0.00 37.03 2.12
2519 2540 3.098774 AGGTTCAGAGAGCAGATCAGA 57.901 47.619 0.00 0.00 0.00 3.27
2696 2717 8.147058 AGCTAATGTTCAGAGATAACATACTGG 58.853 37.037 2.18 0.00 44.66 4.00
2697 2718 8.144478 GCTAATGTTCAGAGATAACATACTGGA 58.856 37.037 2.18 0.00 44.66 3.86
2698 2719 9.689976 CTAATGTTCAGAGATAACATACTGGAG 57.310 37.037 2.18 0.00 44.66 3.86
2699 2720 7.667575 ATGTTCAGAGATAACATACTGGAGT 57.332 36.000 0.00 0.00 43.84 3.85
2882 2911 0.037046 CTGAATTGGTTTGCCCCAGC 60.037 55.000 0.00 0.00 35.49 4.85
2883 2912 0.471591 TGAATTGGTTTGCCCCAGCT 60.472 50.000 0.00 0.00 40.80 4.24
2884 2913 0.037046 GAATTGGTTTGCCCCAGCTG 60.037 55.000 6.78 6.78 40.80 4.24
2885 2914 0.763986 AATTGGTTTGCCCCAGCTGT 60.764 50.000 13.81 0.00 40.80 4.40
2886 2915 1.474332 ATTGGTTTGCCCCAGCTGTG 61.474 55.000 13.81 0.00 40.80 3.66
2887 2916 2.203480 GGTTTGCCCCAGCTGTGA 60.203 61.111 13.81 0.00 40.80 3.58
2888 2917 2.564721 GGTTTGCCCCAGCTGTGAC 61.565 63.158 13.81 1.34 40.80 3.67
2889 2918 2.203480 TTTGCCCCAGCTGTGACC 60.203 61.111 13.81 0.00 40.80 4.02
2897 2926 1.004080 CAGCTGTGACCCTGGAGTG 60.004 63.158 5.25 0.00 0.00 3.51
2917 2946 3.614616 GTGGCACTGTATCTTTCTTCTCG 59.385 47.826 11.13 0.00 0.00 4.04
2988 3021 2.163010 CACCTTTACAGCAGCATTCAGG 59.837 50.000 0.00 0.00 0.00 3.86
3025 3058 0.533755 GGAATCTGATCCTGCCACCG 60.534 60.000 0.00 0.00 36.50 4.94
3026 3059 0.465705 GAATCTGATCCTGCCACCGA 59.534 55.000 0.00 0.00 0.00 4.69
3029 3063 0.687427 TCTGATCCTGCCACCGATCA 60.687 55.000 0.00 0.00 41.94 2.92
3096 3130 6.156519 GTCCAAAATTATCCAGTTGTGTTCC 58.843 40.000 0.00 0.00 0.00 3.62
3097 3131 6.015434 GTCCAAAATTATCCAGTTGTGTTCCT 60.015 38.462 0.00 0.00 0.00 3.36
3098 3132 6.015519 TCCAAAATTATCCAGTTGTGTTCCTG 60.016 38.462 0.00 0.00 0.00 3.86
3099 3133 5.391312 AAATTATCCAGTTGTGTTCCTGC 57.609 39.130 0.00 0.00 0.00 4.85
3100 3134 2.093306 TATCCAGTTGTGTTCCTGCG 57.907 50.000 0.00 0.00 0.00 5.18
3101 3135 0.396435 ATCCAGTTGTGTTCCTGCGA 59.604 50.000 0.00 0.00 0.00 5.10
3102 3136 0.179234 TCCAGTTGTGTTCCTGCGAA 59.821 50.000 0.00 0.00 0.00 4.70
3103 3137 0.588252 CCAGTTGTGTTCCTGCGAAG 59.412 55.000 0.00 0.00 0.00 3.79
3104 3138 1.299541 CAGTTGTGTTCCTGCGAAGT 58.700 50.000 0.00 0.00 0.00 3.01
3158 3215 6.289745 TGTTGTTGTTGTAATCGAACTACC 57.710 37.500 0.00 0.00 30.80 3.18
3159 3216 6.050432 TGTTGTTGTTGTAATCGAACTACCT 58.950 36.000 0.00 0.00 30.80 3.08
3160 3217 6.539464 TGTTGTTGTTGTAATCGAACTACCTT 59.461 34.615 0.00 0.00 30.80 3.50
3161 3218 7.066043 TGTTGTTGTTGTAATCGAACTACCTTT 59.934 33.333 0.00 0.00 30.80 3.11
3162 3219 6.950545 TGTTGTTGTAATCGAACTACCTTTG 58.049 36.000 0.00 0.00 30.80 2.77
3163 3220 5.600908 TGTTGTAATCGAACTACCTTTGC 57.399 39.130 0.00 0.00 0.00 3.68
3199 3262 1.935873 CGATTCACTGATTCGCCACAT 59.064 47.619 9.69 0.00 30.83 3.21
3202 3267 3.326836 TTCACTGATTCGCCACATACA 57.673 42.857 0.00 0.00 0.00 2.29
3203 3268 2.892374 TCACTGATTCGCCACATACAG 58.108 47.619 0.00 0.00 0.00 2.74
3213 3278 2.243056 CACATACAGTGCGCACCAA 58.757 52.632 35.51 21.83 42.15 3.67
3260 3325 1.068748 TGTTCTACGTCTCGTCTTGCC 60.069 52.381 0.00 0.00 41.54 4.52
3407 3543 1.228124 TTGGGACTTGGAAGCACGG 60.228 57.895 0.00 0.00 0.00 4.94
3410 3546 0.391263 GGGACTTGGAAGCACGGTAG 60.391 60.000 0.00 0.00 0.00 3.18
3435 3571 2.850404 GCGATGTTGACGCGTCAA 59.150 55.556 42.01 42.01 46.27 3.18
3582 3718 3.133691 GCATAATCCTGCAGTCGATCAA 58.866 45.455 13.81 2.19 41.87 2.57
3607 3743 7.197017 AGTATCATTGCTAAGTCGTTCTACTG 58.803 38.462 0.00 0.00 0.00 2.74
3612 3751 7.701078 TCATTGCTAAGTCGTTCTACTGTTATC 59.299 37.037 0.00 0.00 0.00 1.75
3649 3788 2.279582 CGAAACATCTCGCAGTACCT 57.720 50.000 0.00 0.00 31.04 3.08
3650 3789 3.416119 CGAAACATCTCGCAGTACCTA 57.584 47.619 0.00 0.00 31.04 3.08
3651 3790 3.966154 CGAAACATCTCGCAGTACCTAT 58.034 45.455 0.00 0.00 31.04 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.002684 CGTCGTCCTTATCTTCCTCCG 60.003 57.143 0.00 0.00 0.00 4.63
3 4 2.033174 GTCGTCGTCCTTATCTTCCTCC 59.967 54.545 0.00 0.00 0.00 4.30
4 5 2.286301 CGTCGTCGTCCTTATCTTCCTC 60.286 54.545 0.00 0.00 0.00 3.71
5 6 1.669779 CGTCGTCGTCCTTATCTTCCT 59.330 52.381 0.00 0.00 0.00 3.36
6 7 1.667724 TCGTCGTCGTCCTTATCTTCC 59.332 52.381 1.33 0.00 38.33 3.46
7 8 2.286301 CCTCGTCGTCGTCCTTATCTTC 60.286 54.545 1.33 0.00 38.33 2.87
8 9 1.669779 CCTCGTCGTCGTCCTTATCTT 59.330 52.381 1.33 0.00 38.33 2.40
9 10 1.134580 TCCTCGTCGTCGTCCTTATCT 60.135 52.381 1.33 0.00 38.33 1.98
10 11 1.293924 TCCTCGTCGTCGTCCTTATC 58.706 55.000 1.33 0.00 38.33 1.75
11 12 1.602851 CATCCTCGTCGTCGTCCTTAT 59.397 52.381 1.33 0.00 38.33 1.73
12 13 1.012086 CATCCTCGTCGTCGTCCTTA 58.988 55.000 1.33 0.00 38.33 2.69
13 14 0.675837 TCATCCTCGTCGTCGTCCTT 60.676 55.000 1.33 0.00 38.33 3.36
14 15 1.078637 TCATCCTCGTCGTCGTCCT 60.079 57.895 1.33 0.00 38.33 3.85
15 16 1.352404 CTCATCCTCGTCGTCGTCC 59.648 63.158 1.33 0.00 38.33 4.79
16 17 1.297745 GCTCATCCTCGTCGTCGTC 60.298 63.158 1.33 0.00 38.33 4.20
17 18 2.762234 GGCTCATCCTCGTCGTCGT 61.762 63.158 1.33 0.00 38.33 4.34
18 19 1.994507 AAGGCTCATCCTCGTCGTCG 61.995 60.000 0.00 0.00 46.94 5.12
19 20 0.526524 CAAGGCTCATCCTCGTCGTC 60.527 60.000 0.00 0.00 46.94 4.20
20 21 0.965866 TCAAGGCTCATCCTCGTCGT 60.966 55.000 0.00 0.00 46.94 4.34
21 22 0.387202 ATCAAGGCTCATCCTCGTCG 59.613 55.000 0.00 0.00 46.94 5.12
22 23 1.137872 ACATCAAGGCTCATCCTCGTC 59.862 52.381 0.00 0.00 46.94 4.20
23 24 1.134580 CACATCAAGGCTCATCCTCGT 60.135 52.381 0.00 0.00 46.94 4.18
24 25 1.134580 ACACATCAAGGCTCATCCTCG 60.135 52.381 0.00 0.00 46.94 4.63
25 26 2.170187 AGACACATCAAGGCTCATCCTC 59.830 50.000 0.00 0.00 46.94 3.71
27 28 2.706339 AGACACATCAAGGCTCATCC 57.294 50.000 0.00 0.00 0.00 3.51
28 29 3.063180 CGAAAGACACATCAAGGCTCATC 59.937 47.826 0.00 0.00 0.00 2.92
29 30 3.005554 CGAAAGACACATCAAGGCTCAT 58.994 45.455 0.00 0.00 0.00 2.90
30 31 2.224281 ACGAAAGACACATCAAGGCTCA 60.224 45.455 0.00 0.00 0.00 4.26
31 32 2.417719 ACGAAAGACACATCAAGGCTC 58.582 47.619 0.00 0.00 0.00 4.70
32 33 2.550830 ACGAAAGACACATCAAGGCT 57.449 45.000 0.00 0.00 0.00 4.58
33 34 3.243068 ACAAACGAAAGACACATCAAGGC 60.243 43.478 0.00 0.00 0.00 4.35
34 35 4.201910 ACACAAACGAAAGACACATCAAGG 60.202 41.667 0.00 0.00 0.00 3.61
35 36 4.908736 ACACAAACGAAAGACACATCAAG 58.091 39.130 0.00 0.00 0.00 3.02
36 37 4.393371 TGACACAAACGAAAGACACATCAA 59.607 37.500 0.00 0.00 0.00 2.57
37 38 3.935828 TGACACAAACGAAAGACACATCA 59.064 39.130 0.00 0.00 0.00 3.07
38 39 4.530094 TGACACAAACGAAAGACACATC 57.470 40.909 0.00 0.00 0.00 3.06
39 40 4.574421 TCATGACACAAACGAAAGACACAT 59.426 37.500 0.00 0.00 0.00 3.21
40 41 3.935828 TCATGACACAAACGAAAGACACA 59.064 39.130 0.00 0.00 0.00 3.72
41 42 4.530094 TCATGACACAAACGAAAGACAC 57.470 40.909 0.00 0.00 0.00 3.67
42 43 4.634004 AGTTCATGACACAAACGAAAGACA 59.366 37.500 0.00 0.00 0.00 3.41
43 44 5.156804 AGTTCATGACACAAACGAAAGAC 57.843 39.130 0.00 0.00 0.00 3.01
44 45 5.448496 CCAAGTTCATGACACAAACGAAAGA 60.448 40.000 0.00 0.00 0.00 2.52
45 46 4.734854 CCAAGTTCATGACACAAACGAAAG 59.265 41.667 0.00 0.00 0.00 2.62
46 47 4.156922 ACCAAGTTCATGACACAAACGAAA 59.843 37.500 0.00 0.00 0.00 3.46
47 48 3.692101 ACCAAGTTCATGACACAAACGAA 59.308 39.130 0.00 0.00 0.00 3.85
48 49 3.275143 ACCAAGTTCATGACACAAACGA 58.725 40.909 0.00 0.00 0.00 3.85
49 50 3.691049 ACCAAGTTCATGACACAAACG 57.309 42.857 0.00 0.00 0.00 3.60
50 51 4.032786 GCAAACCAAGTTCATGACACAAAC 59.967 41.667 0.00 0.00 0.00 2.93
51 52 4.180057 GCAAACCAAGTTCATGACACAAA 58.820 39.130 0.00 0.00 0.00 2.83
52 53 3.194329 TGCAAACCAAGTTCATGACACAA 59.806 39.130 0.00 0.00 0.00 3.33
53 54 2.757314 TGCAAACCAAGTTCATGACACA 59.243 40.909 0.00 0.00 0.00 3.72
54 55 3.435105 TGCAAACCAAGTTCATGACAC 57.565 42.857 0.00 0.00 0.00 3.67
55 56 4.669206 AATGCAAACCAAGTTCATGACA 57.331 36.364 0.00 0.00 0.00 3.58
56 57 5.523188 TCAAAATGCAAACCAAGTTCATGAC 59.477 36.000 0.00 0.00 0.00 3.06
57 58 5.668471 TCAAAATGCAAACCAAGTTCATGA 58.332 33.333 0.00 0.00 0.00 3.07
58 59 5.987777 TCAAAATGCAAACCAAGTTCATG 57.012 34.783 0.00 0.00 0.00 3.07
59 60 6.114767 AGTTCAAAATGCAAACCAAGTTCAT 58.885 32.000 0.00 0.00 0.00 2.57
60 61 5.486526 AGTTCAAAATGCAAACCAAGTTCA 58.513 33.333 0.00 0.00 0.00 3.18
61 62 6.250089 CAAGTTCAAAATGCAAACCAAGTTC 58.750 36.000 0.00 0.00 0.00 3.01
62 63 5.123661 CCAAGTTCAAAATGCAAACCAAGTT 59.876 36.000 0.00 0.00 0.00 2.66
63 64 4.635324 CCAAGTTCAAAATGCAAACCAAGT 59.365 37.500 0.00 0.00 0.00 3.16
64 65 4.635324 ACCAAGTTCAAAATGCAAACCAAG 59.365 37.500 0.00 0.00 0.00 3.61
65 66 4.583871 ACCAAGTTCAAAATGCAAACCAA 58.416 34.783 0.00 0.00 0.00 3.67
66 67 4.213564 ACCAAGTTCAAAATGCAAACCA 57.786 36.364 0.00 0.00 0.00 3.67
67 68 4.201901 CCAACCAAGTTCAAAATGCAAACC 60.202 41.667 0.00 0.00 0.00 3.27
68 69 4.633565 TCCAACCAAGTTCAAAATGCAAAC 59.366 37.500 0.00 0.00 0.00 2.93
69 70 4.836825 TCCAACCAAGTTCAAAATGCAAA 58.163 34.783 0.00 0.00 0.00 3.68
70 71 4.478206 TCCAACCAAGTTCAAAATGCAA 57.522 36.364 0.00 0.00 0.00 4.08
71 72 4.100653 TCATCCAACCAAGTTCAAAATGCA 59.899 37.500 0.00 0.00 0.00 3.96
72 73 4.630111 TCATCCAACCAAGTTCAAAATGC 58.370 39.130 0.00 0.00 0.00 3.56
73 74 6.282930 AGTTCATCCAACCAAGTTCAAAATG 58.717 36.000 0.00 0.00 35.28 2.32
74 75 6.484364 AGTTCATCCAACCAAGTTCAAAAT 57.516 33.333 0.00 0.00 35.28 1.82
75 76 5.930837 AGTTCATCCAACCAAGTTCAAAA 57.069 34.783 0.00 0.00 35.28 2.44
76 77 5.930837 AAGTTCATCCAACCAAGTTCAAA 57.069 34.783 0.00 0.00 35.28 2.69
77 78 6.015519 CCATAAGTTCATCCAACCAAGTTCAA 60.016 38.462 0.00 0.00 35.28 2.69
78 79 5.476599 CCATAAGTTCATCCAACCAAGTTCA 59.523 40.000 0.00 0.00 35.28 3.18
79 80 5.105756 CCCATAAGTTCATCCAACCAAGTTC 60.106 44.000 0.00 0.00 35.28 3.01
80 81 4.772100 CCCATAAGTTCATCCAACCAAGTT 59.228 41.667 0.00 0.00 35.28 2.66
81 82 4.344104 CCCATAAGTTCATCCAACCAAGT 58.656 43.478 0.00 0.00 35.28 3.16
82 83 3.131046 GCCCATAAGTTCATCCAACCAAG 59.869 47.826 0.00 0.00 35.28 3.61
83 84 3.096092 GCCCATAAGTTCATCCAACCAA 58.904 45.455 0.00 0.00 35.28 3.67
84 85 2.042297 TGCCCATAAGTTCATCCAACCA 59.958 45.455 0.00 0.00 35.28 3.67
85 86 2.733956 TGCCCATAAGTTCATCCAACC 58.266 47.619 0.00 0.00 35.28 3.77
86 87 3.953612 TCATGCCCATAAGTTCATCCAAC 59.046 43.478 0.00 0.00 34.86 3.77
87 88 4.248174 TCATGCCCATAAGTTCATCCAA 57.752 40.909 0.00 0.00 0.00 3.53
88 89 3.949586 TCATGCCCATAAGTTCATCCA 57.050 42.857 0.00 0.00 0.00 3.41
89 90 4.210331 AGTTCATGCCCATAAGTTCATCC 58.790 43.478 0.00 0.00 0.00 3.51
90 91 5.841957 AAGTTCATGCCCATAAGTTCATC 57.158 39.130 0.00 0.00 0.00 2.92
91 92 6.610075 AAAAGTTCATGCCCATAAGTTCAT 57.390 33.333 0.00 0.00 0.00 2.57
92 93 7.716799 ATAAAAGTTCATGCCCATAAGTTCA 57.283 32.000 0.00 0.00 0.00 3.18
93 94 8.250332 TGAATAAAAGTTCATGCCCATAAGTTC 58.750 33.333 0.00 0.00 33.41 3.01
94 95 8.133024 TGAATAAAAGTTCATGCCCATAAGTT 57.867 30.769 0.00 0.00 33.41 2.66
95 96 7.716799 TGAATAAAAGTTCATGCCCATAAGT 57.283 32.000 0.00 0.00 33.41 2.24
96 97 8.415553 TGATGAATAAAAGTTCATGCCCATAAG 58.584 33.333 6.84 0.00 46.02 1.73
97 98 8.303780 TGATGAATAAAAGTTCATGCCCATAA 57.696 30.769 6.84 0.00 46.02 1.90
98 99 7.894753 TGATGAATAAAAGTTCATGCCCATA 57.105 32.000 6.84 0.00 46.02 2.74
99 100 6.795144 TGATGAATAAAAGTTCATGCCCAT 57.205 33.333 6.84 0.00 46.02 4.00
100 101 6.211184 AGTTGATGAATAAAAGTTCATGCCCA 59.789 34.615 6.84 0.00 46.02 5.36
101 102 6.633856 AGTTGATGAATAAAAGTTCATGCCC 58.366 36.000 6.84 0.00 46.02 5.36
102 103 7.599998 ACAAGTTGATGAATAAAAGTTCATGCC 59.400 33.333 10.54 0.00 46.02 4.40
103 104 8.524870 ACAAGTTGATGAATAAAAGTTCATGC 57.475 30.769 10.54 1.12 46.02 4.06
106 107 9.868277 ACAAACAAGTTGATGAATAAAAGTTCA 57.132 25.926 10.54 0.00 39.87 3.18
108 109 9.651913 ACACAAACAAGTTGATGAATAAAAGTT 57.348 25.926 10.54 0.00 39.87 2.66
109 110 9.086336 CACACAAACAAGTTGATGAATAAAAGT 57.914 29.630 10.54 0.33 39.87 2.66
110 111 9.299963 TCACACAAACAAGTTGATGAATAAAAG 57.700 29.630 10.54 0.00 39.87 2.27
111 112 9.645059 TTCACACAAACAAGTTGATGAATAAAA 57.355 25.926 10.54 1.00 39.14 1.52
112 113 9.645059 TTTCACACAAACAAGTTGATGAATAAA 57.355 25.926 10.54 6.81 41.34 1.40
113 114 9.814899 ATTTCACACAAACAAGTTGATGAATAA 57.185 25.926 10.54 1.84 41.34 1.40
114 115 9.814899 AATTTCACACAAACAAGTTGATGAATA 57.185 25.926 10.54 2.54 41.34 1.75
115 116 8.721019 AATTTCACACAAACAAGTTGATGAAT 57.279 26.923 10.54 1.64 41.34 2.57
116 117 9.814899 ATAATTTCACACAAACAAGTTGATGAA 57.185 25.926 10.54 6.61 40.69 2.57
130 131 9.964303 GAACATGGCATAATATAATTTCACACA 57.036 29.630 0.00 0.00 0.00 3.72
131 132 9.964303 TGAACATGGCATAATATAATTTCACAC 57.036 29.630 0.00 0.00 0.00 3.82
136 137 9.999660 TGCAATGAACATGGCATAATATAATTT 57.000 25.926 12.15 0.00 42.48 1.82
148 149 5.106475 ACATTCAAAATGCAATGAACATGGC 60.106 36.000 13.17 7.17 38.29 4.40
149 150 6.489127 ACATTCAAAATGCAATGAACATGG 57.511 33.333 13.17 7.73 38.29 3.66
150 151 8.070769 TCAAACATTCAAAATGCAATGAACATG 58.929 29.630 13.17 11.46 38.29 3.21
151 152 8.155821 TCAAACATTCAAAATGCAATGAACAT 57.844 26.923 13.17 4.46 38.29 2.71
152 153 7.549615 TCAAACATTCAAAATGCAATGAACA 57.450 28.000 13.17 0.00 38.29 3.18
153 154 8.838452 TTTCAAACATTCAAAATGCAATGAAC 57.162 26.923 13.17 0.00 38.29 3.18
154 155 9.666626 GATTTCAAACATTCAAAATGCAATGAA 57.333 25.926 13.25 13.25 39.66 2.57
155 156 8.291032 GGATTTCAAACATTCAAAATGCAATGA 58.709 29.630 0.00 0.00 34.60 2.57
156 157 8.076781 TGGATTTCAAACATTCAAAATGCAATG 58.923 29.630 0.00 0.00 36.78 2.82
157 158 8.167605 TGGATTTCAAACATTCAAAATGCAAT 57.832 26.923 0.00 0.00 36.78 3.56
158 159 7.563888 TGGATTTCAAACATTCAAAATGCAA 57.436 28.000 0.00 0.00 36.78 4.08
159 160 7.747155 ATGGATTTCAAACATTCAAAATGCA 57.253 28.000 0.00 0.00 41.52 3.96
160 161 9.465985 AAAATGGATTTCAAACATTCAAAATGC 57.534 25.926 0.00 0.00 34.00 3.56
163 164 9.784680 CACAAAATGGATTTCAAACATTCAAAA 57.215 25.926 0.00 0.00 34.00 2.44
164 165 8.954350 ACACAAAATGGATTTCAAACATTCAAA 58.046 25.926 0.00 0.00 34.00 2.69
165 166 8.503458 ACACAAAATGGATTTCAAACATTCAA 57.497 26.923 0.00 0.00 34.00 2.69
166 167 7.226325 GGACACAAAATGGATTTCAAACATTCA 59.774 33.333 0.00 0.00 34.00 2.57
167 168 7.226325 TGGACACAAAATGGATTTCAAACATTC 59.774 33.333 0.00 0.00 34.00 2.67
168 169 7.052873 TGGACACAAAATGGATTTCAAACATT 58.947 30.769 0.00 0.00 36.46 2.71
169 170 6.590068 TGGACACAAAATGGATTTCAAACAT 58.410 32.000 0.00 0.00 0.00 2.71
170 171 5.982356 TGGACACAAAATGGATTTCAAACA 58.018 33.333 0.00 0.00 0.00 2.83
171 172 6.917217 TTGGACACAAAATGGATTTCAAAC 57.083 33.333 0.00 0.00 32.66 2.93
184 185 5.699915 CCATATGTTGCATTTTGGACACAAA 59.300 36.000 1.24 0.00 44.40 2.83
185 186 5.236282 CCATATGTTGCATTTTGGACACAA 58.764 37.500 1.24 0.00 34.07 3.33
186 187 4.818642 CCATATGTTGCATTTTGGACACA 58.181 39.130 1.24 0.00 0.00 3.72
187 188 3.618150 GCCATATGTTGCATTTTGGACAC 59.382 43.478 1.24 0.00 0.00 3.67
188 189 3.260128 TGCCATATGTTGCATTTTGGACA 59.740 39.130 1.24 0.00 31.31 4.02
189 190 3.859443 TGCCATATGTTGCATTTTGGAC 58.141 40.909 1.24 0.00 31.31 4.02
190 191 4.443621 CATGCCATATGTTGCATTTTGGA 58.556 39.130 14.55 0.00 45.52 3.53
191 192 3.002862 GCATGCCATATGTTGCATTTTGG 59.997 43.478 14.55 7.02 45.52 3.28
192 193 3.302805 CGCATGCCATATGTTGCATTTTG 60.303 43.478 13.15 8.52 45.52 2.44
193 194 2.867368 CGCATGCCATATGTTGCATTTT 59.133 40.909 13.15 0.00 45.52 1.82
194 195 2.475818 CGCATGCCATATGTTGCATTT 58.524 42.857 13.15 0.00 45.52 2.32
195 196 1.870580 GCGCATGCCATATGTTGCATT 60.871 47.619 13.15 1.52 45.52 3.56
197 198 1.066093 GCGCATGCCATATGTTGCA 59.934 52.632 13.15 13.76 42.52 4.08
198 199 3.926497 GCGCATGCCATATGTTGC 58.074 55.556 13.15 2.85 33.98 4.17
269 270 3.989787 GCCCAACGCCTGGTTTGG 61.990 66.667 17.67 17.67 44.76 3.28
270 271 4.341502 CGCCCAACGCCTGGTTTG 62.342 66.667 3.63 0.00 44.76 2.93
286 287 2.780149 AAAAGCTACTTTGCCGCGCG 62.780 55.000 25.67 25.67 33.64 6.86
287 288 0.167251 TAAAAGCTACTTTGCCGCGC 59.833 50.000 0.00 0.00 33.64 6.86
288 289 2.239201 GTTAAAAGCTACTTTGCCGCG 58.761 47.619 0.00 0.00 33.64 6.46
289 290 2.239201 CGTTAAAAGCTACTTTGCCGC 58.761 47.619 0.00 0.00 33.64 6.53
290 291 2.239201 GCGTTAAAAGCTACTTTGCCG 58.761 47.619 0.00 0.00 33.64 5.69
291 292 2.239201 CGCGTTAAAAGCTACTTTGCC 58.761 47.619 0.00 0.00 33.64 4.52
292 293 1.642360 GCGCGTTAAAAGCTACTTTGC 59.358 47.619 8.43 0.00 33.64 3.68
293 294 1.896193 CGCGCGTTAAAAGCTACTTTG 59.104 47.619 24.19 0.00 33.64 2.77
294 295 1.136169 CCGCGCGTTAAAAGCTACTTT 60.136 47.619 29.95 0.00 34.94 2.66
295 296 0.441145 CCGCGCGTTAAAAGCTACTT 59.559 50.000 29.95 0.00 0.00 2.24
296 297 1.963190 GCCGCGCGTTAAAAGCTACT 61.963 55.000 29.95 0.00 0.00 2.57
297 298 1.579374 GCCGCGCGTTAAAAGCTAC 60.579 57.895 29.95 0.61 0.00 3.58
298 299 2.779987 GCCGCGCGTTAAAAGCTA 59.220 55.556 29.95 0.00 0.00 3.32
316 317 1.507141 CTCCAACAGCCGTCCAACAC 61.507 60.000 0.00 0.00 0.00 3.32
317 318 1.227823 CTCCAACAGCCGTCCAACA 60.228 57.895 0.00 0.00 0.00 3.33
318 319 0.321653 ATCTCCAACAGCCGTCCAAC 60.322 55.000 0.00 0.00 0.00 3.77
319 320 0.321564 CATCTCCAACAGCCGTCCAA 60.322 55.000 0.00 0.00 0.00 3.53
320 321 1.296392 CATCTCCAACAGCCGTCCA 59.704 57.895 0.00 0.00 0.00 4.02
321 322 2.109126 GCATCTCCAACAGCCGTCC 61.109 63.158 0.00 0.00 0.00 4.79
322 323 0.674895 AAGCATCTCCAACAGCCGTC 60.675 55.000 0.00 0.00 0.00 4.79
323 324 0.250901 AAAGCATCTCCAACAGCCGT 60.251 50.000 0.00 0.00 0.00 5.68
324 325 1.737838 TAAAGCATCTCCAACAGCCG 58.262 50.000 0.00 0.00 0.00 5.52
325 326 3.736126 GCATTAAAGCATCTCCAACAGCC 60.736 47.826 0.00 0.00 0.00 4.85
326 327 3.442100 GCATTAAAGCATCTCCAACAGC 58.558 45.455 0.00 0.00 0.00 4.40
327 328 3.374988 TCGCATTAAAGCATCTCCAACAG 59.625 43.478 3.30 0.00 0.00 3.16
328 329 3.342719 TCGCATTAAAGCATCTCCAACA 58.657 40.909 3.30 0.00 0.00 3.33
329 330 4.094887 TCTTCGCATTAAAGCATCTCCAAC 59.905 41.667 3.30 0.00 0.00 3.77
330 331 4.260985 TCTTCGCATTAAAGCATCTCCAA 58.739 39.130 3.30 0.00 0.00 3.53
331 332 3.872696 TCTTCGCATTAAAGCATCTCCA 58.127 40.909 3.30 0.00 0.00 3.86
332 333 4.122776 TCTCTTCGCATTAAAGCATCTCC 58.877 43.478 3.30 0.00 0.00 3.71
333 334 5.921004 ATCTCTTCGCATTAAAGCATCTC 57.079 39.130 3.30 0.00 0.00 2.75
334 335 7.976135 AATATCTCTTCGCATTAAAGCATCT 57.024 32.000 3.30 0.00 0.00 2.90
337 338 8.506437 CCAATAATATCTCTTCGCATTAAAGCA 58.494 33.333 3.30 0.00 0.00 3.91
338 339 7.965107 CCCAATAATATCTCTTCGCATTAAAGC 59.035 37.037 0.00 0.00 0.00 3.51
339 340 9.219603 TCCCAATAATATCTCTTCGCATTAAAG 57.780 33.333 0.00 0.00 0.00 1.85
340 341 9.219603 CTCCCAATAATATCTCTTCGCATTAAA 57.780 33.333 0.00 0.00 0.00 1.52
341 342 8.593679 TCTCCCAATAATATCTCTTCGCATTAA 58.406 33.333 0.00 0.00 0.00 1.40
342 343 8.134202 TCTCCCAATAATATCTCTTCGCATTA 57.866 34.615 0.00 0.00 0.00 1.90
343 344 7.009179 TCTCCCAATAATATCTCTTCGCATT 57.991 36.000 0.00 0.00 0.00 3.56
359 360 2.025321 ACGCCCAAAACTATCTCCCAAT 60.025 45.455 0.00 0.00 0.00 3.16
364 365 2.706890 TGGAACGCCCAAAACTATCTC 58.293 47.619 0.00 0.00 43.29 2.75
376 377 3.317993 AGGTTGCATTATATTGGAACGCC 59.682 43.478 19.33 11.06 45.62 5.68
383 384 6.048509 GGGTTTTGGAGGTTGCATTATATTG 58.951 40.000 0.00 0.00 0.00 1.90
388 389 3.161866 GAGGGTTTTGGAGGTTGCATTA 58.838 45.455 0.00 0.00 0.00 1.90
393 394 2.065899 TGTGAGGGTTTTGGAGGTTG 57.934 50.000 0.00 0.00 0.00 3.77
399 400 4.394610 CCAAACTTTTTGTGAGGGTTTTGG 59.605 41.667 0.00 0.00 0.00 3.28
413 414 6.299141 TCTCACAATCTAGCTCCAAACTTTT 58.701 36.000 0.00 0.00 0.00 2.27
417 418 4.092091 CGTTCTCACAATCTAGCTCCAAAC 59.908 45.833 0.00 0.00 0.00 2.93
418 419 4.245660 CGTTCTCACAATCTAGCTCCAAA 58.754 43.478 0.00 0.00 0.00 3.28
419 420 3.368427 CCGTTCTCACAATCTAGCTCCAA 60.368 47.826 0.00 0.00 0.00 3.53
430 431 5.828299 ACTTCAAAAATCCGTTCTCACAA 57.172 34.783 0.00 0.00 0.00 3.33
454 455 5.641636 GCATTTGTAATCGAACCCCAAAATT 59.358 36.000 0.00 0.00 0.00 1.82
473 475 8.812972 TCCTATAATATCGGTGTAAGAGCATTT 58.187 33.333 0.00 0.00 0.00 2.32
474 476 8.251721 GTCCTATAATATCGGTGTAAGAGCATT 58.748 37.037 0.00 0.00 0.00 3.56
479 481 7.722728 AGTGTGTCCTATAATATCGGTGTAAGA 59.277 37.037 0.00 0.00 0.00 2.10
497 499 7.412137 ACTTAACGTACATTAAAGTGTGTCC 57.588 36.000 0.00 0.00 33.62 4.02
498 500 8.758715 AGAACTTAACGTACATTAAAGTGTGTC 58.241 33.333 0.00 0.00 33.62 3.67
499 501 8.652810 AGAACTTAACGTACATTAAAGTGTGT 57.347 30.769 0.00 0.00 33.62 3.72
527 529 6.168389 AGTTCGCTTATGCATGATATGATCA 58.832 36.000 10.16 0.00 44.55 2.92
548 550 6.376299 TGCAGCTGATATTGAGAAAATGAGTT 59.624 34.615 20.43 0.00 0.00 3.01
551 553 6.544564 TGATGCAGCTGATATTGAGAAAATGA 59.455 34.615 20.43 0.00 0.00 2.57
578 580 7.369803 TGTTTATGAAGACTCTGCTCATTTC 57.630 36.000 0.00 0.00 0.00 2.17
579 581 7.627939 GCATGTTTATGAAGACTCTGCTCATTT 60.628 37.037 0.00 0.00 36.36 2.32
614 616 5.421056 AGATCATGTAGTGGGTAGAAAACGA 59.579 40.000 0.00 0.00 0.00 3.85
620 622 2.623416 CGCAGATCATGTAGTGGGTAGA 59.377 50.000 0.00 0.00 0.00 2.59
626 628 5.060200 CGATACATTCGCAGATCATGTAGTG 59.940 44.000 8.34 1.63 41.60 2.74
627 629 5.157067 CGATACATTCGCAGATCATGTAGT 58.843 41.667 8.34 0.00 41.60 2.73
645 653 1.597195 TGATTCGGCATGTTGCGATAC 59.403 47.619 0.00 0.00 46.21 2.24
649 657 0.377905 TCATGATTCGGCATGTTGCG 59.622 50.000 11.61 0.00 46.21 4.85
660 668 0.460284 ACGGACGCAGGTCATGATTC 60.460 55.000 0.00 0.00 45.28 2.52
684 692 1.129437 GTCTCTCAGGTTGAATTGCGC 59.871 52.381 0.00 0.00 0.00 6.09
1014 1030 1.572447 GCGCCAAGTAAAGTTGCGA 59.428 52.632 6.36 0.00 32.33 5.10
1015 1031 1.442017 GGCGCCAAGTAAAGTTGCG 60.442 57.895 24.80 0.00 33.17 4.85
1376 1394 2.892425 GCGGCATCCTTCTCCACG 60.892 66.667 0.00 0.00 0.00 4.94
1817 1835 2.431683 GCCTTGGCCAGTGTCTCA 59.568 61.111 5.11 0.00 0.00 3.27
2015 2033 2.114616 TCCTGATCTCCTCTGCCTTTC 58.885 52.381 0.00 0.00 0.00 2.62
2017 2035 1.494960 GTCCTGATCTCCTCTGCCTT 58.505 55.000 0.00 0.00 0.00 4.35
2033 2051 0.811616 CCTGCTGCGAGTAATGGTCC 60.812 60.000 0.00 0.00 0.00 4.46
2052 2070 0.514691 CTGTTGAAGCTCTGCGAACC 59.485 55.000 0.00 0.00 0.00 3.62
2078 2096 1.672145 GGCGAGGAGTTGGTGTAAGTC 60.672 57.143 0.00 0.00 37.89 3.01
2223 2244 2.981560 CTGCATTGCCGGCTTCGTT 61.982 57.895 29.70 4.57 0.00 3.85
2249 2270 1.473965 GGCTCTTCTGATCCATGCGAA 60.474 52.381 0.00 0.00 0.00 4.70
2270 2291 5.279056 GGCTTGGTACTCTCTGTATCCATAC 60.279 48.000 0.00 0.00 34.63 2.39
2450 2471 0.961358 CCTCGTTCTCGTCCACCTCT 60.961 60.000 0.00 0.00 38.33 3.69
2519 2540 1.741770 GGACGCGATCCTTTGCAGT 60.742 57.895 15.93 0.00 45.22 4.40
2567 2588 1.639298 CCAGCTACTTGCCGTGCTTC 61.639 60.000 0.00 0.00 44.23 3.86
2585 2606 3.749735 GAGCGAGTCGAGCTGAGCC 62.750 68.421 18.61 0.00 46.13 4.70
2695 2716 7.612668 TCTTGATACTATAGCGATGTACTCC 57.387 40.000 0.00 0.00 0.00 3.85
2696 2717 7.964011 GGTTCTTGATACTATAGCGATGTACTC 59.036 40.741 0.00 0.00 0.00 2.59
2697 2718 7.447545 TGGTTCTTGATACTATAGCGATGTACT 59.552 37.037 0.00 0.00 0.00 2.73
2698 2719 7.537991 GTGGTTCTTGATACTATAGCGATGTAC 59.462 40.741 0.00 0.00 0.00 2.90
2699 2720 7.309012 GGTGGTTCTTGATACTATAGCGATGTA 60.309 40.741 0.00 0.00 0.00 2.29
2814 2835 6.876155 AGATGGATCATCGATCTCTTAATGG 58.124 40.000 6.35 0.00 44.67 3.16
2882 2911 2.348998 GCCACTCCAGGGTCACAG 59.651 66.667 0.00 0.00 0.00 3.66
2883 2912 2.447572 TGCCACTCCAGGGTCACA 60.448 61.111 0.00 0.00 0.00 3.58
2884 2913 2.032681 GTGCCACTCCAGGGTCAC 59.967 66.667 0.00 0.00 0.00 3.67
2885 2914 2.122413 AGTGCCACTCCAGGGTCA 60.122 61.111 0.00 0.00 0.00 4.02
2886 2915 1.192146 TACAGTGCCACTCCAGGGTC 61.192 60.000 0.00 0.00 0.00 4.46
2887 2916 0.547712 ATACAGTGCCACTCCAGGGT 60.548 55.000 0.00 0.00 0.00 4.34
2888 2917 0.179000 GATACAGTGCCACTCCAGGG 59.821 60.000 0.00 0.00 0.00 4.45
2889 2918 1.198713 AGATACAGTGCCACTCCAGG 58.801 55.000 0.00 0.00 0.00 4.45
2897 2926 4.111375 TCGAGAAGAAAGATACAGTGCC 57.889 45.455 0.00 0.00 0.00 5.01
2917 2946 5.419471 AGAGAATACTACAGGTGGTCAGTTC 59.581 44.000 0.00 0.00 0.00 3.01
2988 3021 3.876274 TCCACACTATCTGAAGCTGAC 57.124 47.619 0.00 0.00 0.00 3.51
3025 3058 6.414408 AATTCATTCGGCGAGATAATGATC 57.586 37.500 19.21 0.00 38.89 2.92
3026 3059 6.414408 GAATTCATTCGGCGAGATAATGAT 57.586 37.500 19.21 8.50 38.89 2.45
3096 3130 1.226407 TCGATCGCAGACTTCGCAG 60.226 57.895 11.09 0.00 42.51 5.18
3097 3131 1.514228 GTCGATCGCAGACTTCGCA 60.514 57.895 11.09 0.00 42.51 5.10
3098 3132 2.224885 GGTCGATCGCAGACTTCGC 61.225 63.158 11.09 0.00 42.51 4.70
3099 3133 0.863538 CAGGTCGATCGCAGACTTCG 60.864 60.000 11.09 0.00 42.51 3.79
3100 3134 0.171455 ACAGGTCGATCGCAGACTTC 59.829 55.000 11.09 0.00 42.51 3.01
3101 3135 1.460504 TACAGGTCGATCGCAGACTT 58.539 50.000 11.09 0.00 42.51 3.01
3102 3136 1.460504 TTACAGGTCGATCGCAGACT 58.539 50.000 11.09 2.52 42.51 3.24
3103 3137 2.493713 ATTACAGGTCGATCGCAGAC 57.506 50.000 11.09 3.27 42.51 3.51
3104 3138 4.642445 TTAATTACAGGTCGATCGCAGA 57.358 40.909 11.09 0.00 45.75 4.26
3158 3215 1.662122 GGTACGTTCGGTATGGCAAAG 59.338 52.381 0.00 0.00 32.74 2.77
3159 3216 1.675415 GGGTACGTTCGGTATGGCAAA 60.675 52.381 0.00 0.00 32.74 3.68
3160 3217 0.108233 GGGTACGTTCGGTATGGCAA 60.108 55.000 0.00 0.00 32.74 4.52
3161 3218 1.516892 GGGTACGTTCGGTATGGCA 59.483 57.895 0.00 0.00 32.74 4.92
3162 3219 1.589727 CGGGTACGTTCGGTATGGC 60.590 63.158 0.00 0.00 32.74 4.40
3163 3220 0.670162 ATCGGGTACGTTCGGTATGG 59.330 55.000 0.00 0.00 41.85 2.74
3199 3262 1.598882 TGAATTTGGTGCGCACTGTA 58.401 45.000 36.84 22.84 0.00 2.74
3202 3267 0.168788 CGATGAATTTGGTGCGCACT 59.831 50.000 36.84 19.62 0.00 4.40
3203 3268 0.167908 TCGATGAATTTGGTGCGCAC 59.832 50.000 32.15 32.15 0.00 5.34
3213 3278 8.637099 TGAGTCATTCTTCTATCTCGATGAATT 58.363 33.333 0.00 0.00 36.33 2.17
3327 3415 9.120538 CCATATTAAGTTATTAACAGCACAGGT 57.879 33.333 9.15 0.00 33.78 4.00
3328 3416 8.076178 GCCATATTAAGTTATTAACAGCACAGG 58.924 37.037 9.15 4.10 33.78 4.00
3329 3417 8.620416 TGCCATATTAAGTTATTAACAGCACAG 58.380 33.333 9.15 0.00 33.78 3.66
3330 3418 8.512966 TGCCATATTAAGTTATTAACAGCACA 57.487 30.769 9.15 0.00 33.78 4.57
3332 3420 7.502226 AGCTGCCATATTAAGTTATTAACAGCA 59.498 33.333 22.95 15.56 42.58 4.41
3333 3421 7.875971 AGCTGCCATATTAAGTTATTAACAGC 58.124 34.615 18.52 18.52 41.58 4.40
3342 3430 8.024145 ACTTCTACTAGCTGCCATATTAAGTT 57.976 34.615 0.00 0.00 0.00 2.66
3344 3432 8.144478 TCAACTTCTACTAGCTGCCATATTAAG 58.856 37.037 0.00 0.00 0.00 1.85
3348 3444 5.600484 ACTCAACTTCTACTAGCTGCCATAT 59.400 40.000 0.00 0.00 0.00 1.78
3407 3543 2.928116 GTCAACATCGCACTAACCCTAC 59.072 50.000 0.00 0.00 0.00 3.18
3410 3546 0.719465 CGTCAACATCGCACTAACCC 59.281 55.000 0.00 0.00 0.00 4.11
3435 3571 6.183360 GCCAAAACAGATGCATACTTAGACAT 60.183 38.462 0.00 0.00 0.00 3.06
3538 3674 4.588899 TGCTAAAGAAAGGCTTGCAGATA 58.411 39.130 8.21 0.00 36.80 1.98
3582 3718 7.148052 ACAGTAGAACGACTTAGCAATGATACT 60.148 37.037 0.00 0.00 0.00 2.12
3607 3743 5.687285 CGCCCTGATGCTTTTAAATGATAAC 59.313 40.000 5.33 0.00 0.00 1.89
3612 3751 3.781079 TCGCCCTGATGCTTTTAAATG 57.219 42.857 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.