Multiple sequence alignment - TraesCS1D01G220000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G220000 chr1D 100.000 6509 0 0 1 6509 307825629 307832137 0.000000e+00 12020.0
1 TraesCS1D01G220000 chr1D 95.430 744 29 5 10 749 492433333 492432591 0.000000e+00 1181.0
2 TraesCS1D01G220000 chr1D 95.506 89 4 0 4474 4562 356862395 356862307 6.800000e-30 143.0
3 TraesCS1D01G220000 chr1D 95.506 89 3 1 4475 4563 365544054 365543967 2.450000e-29 141.0
4 TraesCS1D01G220000 chr1D 95.455 88 4 0 4475 4562 468550791 468550704 2.450000e-29 141.0
5 TraesCS1D01G220000 chr1D 93.548 93 6 0 4471 4563 346659798 346659706 8.800000e-29 139.0
6 TraesCS1D01G220000 chr1D 95.349 86 4 0 4475 4560 318382794 318382879 3.170000e-28 137.0
7 TraesCS1D01G220000 chr1D 91.579 95 6 2 4466 4559 111540658 111540751 5.300000e-26 130.0
8 TraesCS1D01G220000 chr1A 94.702 2246 92 18 1392 3626 387023344 387025573 0.000000e+00 3463.0
9 TraesCS1D01G220000 chr1A 91.810 1050 62 13 5318 6359 387027385 387028418 0.000000e+00 1441.0
10 TraesCS1D01G220000 chr1A 91.753 873 47 16 3625 4478 387025659 387026525 0.000000e+00 1190.0
11 TraesCS1D01G220000 chr1A 91.774 620 43 6 4701 5316 387026737 387027352 0.000000e+00 856.0
12 TraesCS1D01G220000 chr1A 90.748 508 21 12 812 1310 387022761 387023251 0.000000e+00 654.0
13 TraesCS1D01G220000 chr1A 94.565 92 5 0 4471 4562 527084019 527083928 6.800000e-30 143.0
14 TraesCS1D01G220000 chr1A 93.684 95 5 1 4463 4557 505489772 505489865 2.450000e-29 141.0
15 TraesCS1D01G220000 chr1A 96.154 78 3 0 6432 6509 387028473 387028550 1.900000e-25 128.0
16 TraesCS1D01G220000 chr1A 97.143 35 1 0 6361 6395 387028435 387028469 7.050000e-05 60.2
17 TraesCS1D01G220000 chr1B 94.966 2066 87 11 1568 3626 416816966 416819021 0.000000e+00 3223.0
18 TraesCS1D01G220000 chr1B 91.858 872 44 16 3626 4478 416819246 416820109 0.000000e+00 1192.0
19 TraesCS1D01G220000 chr1B 94.719 606 24 4 5655 6258 416821087 416821686 0.000000e+00 935.0
20 TraesCS1D01G220000 chr1B 94.040 453 22 3 4865 5316 416820315 416820763 0.000000e+00 682.0
21 TraesCS1D01G220000 chr1B 90.748 508 23 10 804 1310 416815931 416816415 0.000000e+00 656.0
22 TraesCS1D01G220000 chr1B 95.752 306 11 2 5318 5623 416820795 416821098 5.860000e-135 492.0
23 TraesCS1D01G220000 chr1B 97.835 231 5 0 1335 1565 416816657 416816887 3.660000e-107 399.0
24 TraesCS1D01G220000 chr1B 89.143 175 8 9 6339 6509 416821733 416821900 2.380000e-49 207.0
25 TraesCS1D01G220000 chr1B 85.572 201 15 6 4558 4748 416820106 416820302 1.430000e-46 198.0
26 TraesCS1D01G220000 chr1B 92.969 128 8 1 3626 3753 416819108 416819234 1.110000e-42 185.0
27 TraesCS1D01G220000 chr1B 92.308 52 3 1 6309 6359 416821687 416821738 9.050000e-09 73.1
28 TraesCS1D01G220000 chr6D 95.485 753 30 4 1 750 81136480 81137231 0.000000e+00 1199.0
29 TraesCS1D01G220000 chr6D 95.556 90 2 2 4471 4559 1551888 1551800 6.800000e-30 143.0
30 TraesCS1D01G220000 chr6D 93.478 92 6 0 4471 4562 196357905 196357996 3.170000e-28 137.0
31 TraesCS1D01G220000 chr6D 94.318 88 5 0 4475 4562 9406776 9406689 1.140000e-27 135.0
32 TraesCS1D01G220000 chr6D 94.318 88 5 0 4475 4562 63731595 63731508 1.140000e-27 135.0
33 TraesCS1D01G220000 chr6D 95.294 85 4 0 4475 4559 114156706 114156790 1.140000e-27 135.0
34 TraesCS1D01G220000 chr6D 94.318 88 5 0 4475 4562 296699576 296699489 1.140000e-27 135.0
35 TraesCS1D01G220000 chr6D 95.294 85 4 0 4475 4559 427344939 427344855 1.140000e-27 135.0
36 TraesCS1D01G220000 chr6D 92.391 92 7 0 4475 4566 6507673 6507764 1.470000e-26 132.0
37 TraesCS1D01G220000 chr6D 87.179 117 13 2 4462 4576 99730302 99730186 1.470000e-26 132.0
38 TraesCS1D01G220000 chr3D 95.485 753 26 7 1 749 191557899 191558647 0.000000e+00 1195.0
39 TraesCS1D01G220000 chr3D 94.444 774 32 10 1 771 160907359 160906594 0.000000e+00 1181.0
40 TraesCS1D01G220000 chr3D 98.824 85 1 0 4475 4559 402465441 402465357 1.130000e-32 152.0
41 TraesCS1D01G220000 chr4D 95.080 752 30 7 1 747 168195576 168194827 0.000000e+00 1177.0
42 TraesCS1D01G220000 chr4D 94.834 755 33 5 1 749 310366059 310366813 0.000000e+00 1173.0
43 TraesCS1D01G220000 chr4D 81.564 895 144 15 2567 3453 226561949 226562830 0.000000e+00 719.0
44 TraesCS1D01G220000 chr4D 88.095 294 32 1 4916 5209 226564439 226564729 4.830000e-91 346.0
45 TraesCS1D01G220000 chr4D 81.333 300 56 0 4061 4360 226563528 226563827 1.810000e-60 244.0
46 TraesCS1D01G220000 chr4D 96.512 86 3 0 4475 4560 245478338 245478423 6.800000e-30 143.0
47 TraesCS1D01G220000 chr4D 96.512 86 3 0 4475 4560 282080032 282079947 6.800000e-30 143.0
48 TraesCS1D01G220000 chr4D 94.505 91 4 1 4475 4565 478668930 478669019 8.800000e-29 139.0
49 TraesCS1D01G220000 chr4D 82.468 154 24 3 1796 1949 226560935 226561085 1.470000e-26 132.0
50 TraesCS1D01G220000 chr4D 90.476 84 8 0 1013 1096 226455642 226455725 1.920000e-20 111.0
51 TraesCS1D01G220000 chr4D 89.655 87 9 0 1010 1096 226558478 226558564 1.920000e-20 111.0
52 TraesCS1D01G220000 chr4D 88.506 87 10 0 1010 1096 226385547 226385633 8.930000e-19 106.0
53 TraesCS1D01G220000 chr5D 94.548 752 33 6 1 749 555500331 555499585 0.000000e+00 1155.0
54 TraesCS1D01G220000 chr5D 94.737 95 5 0 4467 4561 509426563 509426469 1.460000e-31 148.0
55 TraesCS1D01G220000 chr5D 94.681 94 5 0 4468 4561 128577679 128577586 5.260000e-31 147.0
56 TraesCS1D01G220000 chr7D 94.533 750 36 4 1 749 177122000 177122745 0.000000e+00 1153.0
57 TraesCS1D01G220000 chr7D 94.024 753 40 4 1 749 551493094 551493845 0.000000e+00 1136.0
58 TraesCS1D01G220000 chr2D 82.398 909 137 17 2556 3455 648283769 648284663 0.000000e+00 771.0
59 TraesCS1D01G220000 chr2D 78.529 340 54 18 1653 1979 648282464 648282797 8.550000e-49 206.0
60 TraesCS1D01G220000 chr2D 98.837 86 1 0 4475 4560 588164210 588164125 3.140000e-33 154.0
61 TraesCS1D01G220000 chr2D 96.703 91 3 0 4473 4563 128890725 128890635 1.130000e-32 152.0
62 TraesCS1D01G220000 chr2D 96.667 90 3 0 4472 4561 302248010 302248099 4.070000e-32 150.0
63 TraesCS1D01G220000 chr2D 89.888 89 9 0 1008 1096 648281386 648281474 1.480000e-21 115.0
64 TraesCS1D01G220000 chr2D 85.870 92 13 0 1444 1535 648282276 648282367 1.490000e-16 99.0
65 TraesCS1D01G220000 chr2B 82.037 913 142 18 2556 3459 783444505 783445404 0.000000e+00 758.0
66 TraesCS1D01G220000 chr2B 93.069 101 6 1 4460 4559 337084257 337084157 5.260000e-31 147.0
67 TraesCS1D01G220000 chr2B 89.888 89 9 0 1008 1096 783441890 783441978 1.480000e-21 115.0
68 TraesCS1D01G220000 chr2B 85.870 92 13 0 1444 1535 783443259 783443350 1.490000e-16 99.0
69 TraesCS1D01G220000 chrUn 82.060 903 136 18 2559 3450 31114336 31113449 0.000000e+00 747.0
70 TraesCS1D01G220000 chrUn 94.444 90 5 0 4471 4560 31863542 31863631 8.800000e-29 139.0
71 TraesCS1D01G220000 chrUn 95.294 85 4 0 4475 4559 101630800 101630884 1.140000e-27 135.0
72 TraesCS1D01G220000 chrUn 94.253 87 5 0 4474 4560 287061742 287061828 4.090000e-27 134.0
73 TraesCS1D01G220000 chrUn 95.181 83 3 1 4477 4559 320256179 320256098 5.300000e-26 130.0
74 TraesCS1D01G220000 chrUn 95.181 83 3 1 4477 4559 357700829 357700748 5.300000e-26 130.0
75 TraesCS1D01G220000 chrUn 92.222 90 7 0 4476 4565 111025383 111025294 1.900000e-25 128.0
76 TraesCS1D01G220000 chrUn 92.135 89 7 0 4475 4563 29029286 29029198 6.850000e-25 126.0
77 TraesCS1D01G220000 chrUn 93.976 83 5 0 4479 4561 225564034 225564116 6.850000e-25 126.0
78 TraesCS1D01G220000 chrUn 93.976 83 5 0 4479 4561 237460336 237460254 6.850000e-25 126.0
79 TraesCS1D01G220000 chrUn 91.304 92 8 0 4471 4562 316200627 316200536 6.850000e-25 126.0
80 TraesCS1D01G220000 chrUn 93.023 86 5 1 4475 4560 29722048 29722132 2.460000e-24 124.0
81 TraesCS1D01G220000 chrUn 91.209 91 8 0 4470 4560 154694870 154694960 2.460000e-24 124.0
82 TraesCS1D01G220000 chrUn 89.888 89 9 0 1008 1096 31116585 31116497 1.480000e-21 115.0
83 TraesCS1D01G220000 chr4B 81.544 894 146 14 2567 3453 311371744 311370863 0.000000e+00 719.0
84 TraesCS1D01G220000 chr4B 88.435 294 31 1 4916 5209 311369220 311368930 1.040000e-92 351.0
85 TraesCS1D01G220000 chr4B 82.333 300 53 0 4061 4360 311370116 311369817 1.800000e-65 261.0
86 TraesCS1D01G220000 chr4B 96.629 89 3 0 4472 4560 423050993 423051081 1.460000e-31 148.0
87 TraesCS1D01G220000 chr4B 90.265 113 9 2 4465 4576 670388398 670388287 5.260000e-31 147.0
88 TraesCS1D01G220000 chr4B 96.512 86 3 0 4474 4559 4233516 4233601 6.800000e-30 143.0
89 TraesCS1D01G220000 chr4B 92.157 102 5 3 4475 4575 633769956 633769857 2.450000e-29 141.0
90 TraesCS1D01G220000 chr4B 82.468 154 24 3 1796 1949 311372756 311372606 1.470000e-26 132.0
91 TraesCS1D01G220000 chr4B 90.816 98 7 2 4474 4571 615550551 615550646 5.300000e-26 130.0
92 TraesCS1D01G220000 chr4A 81.027 896 147 17 2567 3453 232511095 232511976 0.000000e+00 691.0
93 TraesCS1D01G220000 chr4A 87.500 296 34 1 4914 5209 232513581 232513873 8.080000e-89 339.0
94 TraesCS1D01G220000 chr4A 82.000 300 54 0 4061 4360 232512671 232512970 8.380000e-64 255.0
95 TraesCS1D01G220000 chr4A 90.805 87 8 0 1010 1096 232506675 232506761 4.120000e-22 117.0
96 TraesCS1D01G220000 chr6A 86.340 388 36 5 4102 4478 37835601 37835982 2.190000e-109 407.0
97 TraesCS1D01G220000 chr6A 93.878 98 5 1 4463 4560 584511351 584511447 5.260000e-31 147.0
98 TraesCS1D01G220000 chr6A 92.708 96 5 2 4469 4563 40525467 40525373 3.170000e-28 137.0
99 TraesCS1D01G220000 chr7A 84.322 236 34 2 5371 5604 348315380 348315146 1.830000e-55 228.0
100 TraesCS1D01G220000 chr7A 91.667 108 8 1 4452 4559 612375586 612375692 1.460000e-31 148.0
101 TraesCS1D01G220000 chr2A 95.833 96 4 0 4467 4562 39327513 39327418 8.740000e-34 156.0
102 TraesCS1D01G220000 chr2A 94.000 100 5 1 4468 4567 258406425 258406523 4.070000e-32 150.0
103 TraesCS1D01G220000 chr2A 93.939 99 4 2 4463 4560 632952897 632952994 1.460000e-31 148.0
104 TraesCS1D01G220000 chr2A 93.000 100 7 0 4462 4561 703709107 703709008 5.260000e-31 147.0
105 TraesCS1D01G220000 chr6B 95.699 93 4 0 4470 4562 233032503 233032411 4.070000e-32 150.0
106 TraesCS1D01G220000 chr7B 94.737 95 5 0 4469 4563 740996150 740996244 1.460000e-31 148.0
107 TraesCS1D01G220000 chr3B 91.346 104 8 1 4475 4577 65214140 65214037 2.450000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G220000 chr1D 307825629 307832137 6508 False 12020.000000 12020 100.000000 1 6509 1 chr1D.!!$F2 6508
1 TraesCS1D01G220000 chr1D 492432591 492433333 742 True 1181.000000 1181 95.430000 10 749 1 chr1D.!!$R5 739
2 TraesCS1D01G220000 chr1A 387022761 387028550 5789 False 1113.171429 3463 93.440571 812 6509 7 chr1A.!!$F2 5697
3 TraesCS1D01G220000 chr1B 416815931 416821900 5969 False 749.281818 3223 92.719091 804 6509 11 chr1B.!!$F1 5705
4 TraesCS1D01G220000 chr6D 81136480 81137231 751 False 1199.000000 1199 95.485000 1 750 1 chr6D.!!$F2 749
5 TraesCS1D01G220000 chr3D 191557899 191558647 748 False 1195.000000 1195 95.485000 1 749 1 chr3D.!!$F1 748
6 TraesCS1D01G220000 chr3D 160906594 160907359 765 True 1181.000000 1181 94.444000 1 771 1 chr3D.!!$R1 770
7 TraesCS1D01G220000 chr4D 168194827 168195576 749 True 1177.000000 1177 95.080000 1 747 1 chr4D.!!$R1 746
8 TraesCS1D01G220000 chr4D 310366059 310366813 754 False 1173.000000 1173 94.834000 1 749 1 chr4D.!!$F4 748
9 TraesCS1D01G220000 chr4D 226558478 226564729 6251 False 310.400000 719 84.623000 1010 5209 5 chr4D.!!$F6 4199
10 TraesCS1D01G220000 chr5D 555499585 555500331 746 True 1155.000000 1155 94.548000 1 749 1 chr5D.!!$R3 748
11 TraesCS1D01G220000 chr7D 177122000 177122745 745 False 1153.000000 1153 94.533000 1 749 1 chr7D.!!$F1 748
12 TraesCS1D01G220000 chr7D 551493094 551493845 751 False 1136.000000 1136 94.024000 1 749 1 chr7D.!!$F2 748
13 TraesCS1D01G220000 chr2D 648281386 648284663 3277 False 297.750000 771 84.171250 1008 3455 4 chr2D.!!$F2 2447
14 TraesCS1D01G220000 chr2B 783441890 783445404 3514 False 324.000000 758 85.931667 1008 3459 3 chr2B.!!$F1 2451
15 TraesCS1D01G220000 chrUn 31113449 31116585 3136 True 431.000000 747 85.974000 1008 3450 2 chrUn.!!$R7 2442
16 TraesCS1D01G220000 chr4B 311368930 311372756 3826 True 365.750000 719 83.695000 1796 5209 4 chr4B.!!$R3 3413
17 TraesCS1D01G220000 chr4A 232511095 232513873 2778 False 428.333333 691 83.509000 2567 5209 3 chr4A.!!$F2 2642

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 796 0.033642 GGTAGGATGCCCGAAGTAGC 59.966 60.000 0.0 0.0 33.16 3.58 F
797 811 0.035343 GTAGCCCCTTGACCAGTTCC 60.035 60.000 0.0 0.0 0.00 3.62 F
2009 4868 0.037590 TCCATGTGTTGCTACCACCC 59.962 55.000 0.0 0.0 31.71 4.61 F
2965 6696 2.358003 AGCTGCTCACGTTCTGGC 60.358 61.111 0.0 0.0 0.00 4.85 F
4155 8259 1.302832 GTGTCCCACAAGCCTCAGG 60.303 63.158 0.0 0.0 34.08 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1820 4679 1.526041 CTGCAAGCGCTAGATCATCAC 59.474 52.381 12.05 0.00 39.64 3.06 R
2047 4906 2.421424 GCTTGTGCAGTTCATAGAAGGG 59.579 50.000 0.00 0.00 39.41 3.95 R
3455 7195 0.329596 AGAAATGGGAGGTGGTGAGC 59.670 55.000 0.00 0.00 0.00 4.26 R
4912 9420 0.035630 AGGATCCACAAGCTGACAGC 60.036 55.000 20.12 20.12 42.84 4.40 R
5716 10298 0.183492 TCCATGGGAGGTTAGCATGC 59.817 55.000 13.02 10.51 0.00 4.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 107 1.532868 GACAACTACAGCTGTTGCCAG 59.467 52.381 27.06 18.46 46.03 4.85
121 124 1.338107 CAGGTGTGGTCTGGTCTACA 58.662 55.000 0.00 0.00 0.00 2.74
172 175 4.413760 AGTTGGCACCTACTAACACTAGA 58.586 43.478 1.72 0.00 30.83 2.43
292 300 7.492344 CAGTTGCCATGTAAAAAGAAAGAGTTT 59.508 33.333 0.00 0.00 0.00 2.66
640 654 1.078426 GCCTTGTCCTACGTGGCAT 60.078 57.895 0.00 0.00 38.41 4.40
669 683 3.320541 TCGGTCAAAACATGCCAAGATTT 59.679 39.130 0.00 0.00 0.00 2.17
675 689 3.688694 AACATGCCAAGATTTGTGCAT 57.311 38.095 10.11 10.11 43.49 3.96
696 710 4.457496 CTGCTGGACGGCGATGGT 62.457 66.667 16.62 0.00 34.52 3.55
720 734 2.778299 GTGTGGTTGAGATGGCTAACA 58.222 47.619 0.00 0.00 0.00 2.41
727 741 1.915489 TGAGATGGCTAACACCCACAT 59.085 47.619 0.00 0.00 34.68 3.21
751 765 1.807742 TGGGCGTTAACATTTCCGAAG 59.192 47.619 6.39 0.00 0.00 3.79
752 766 2.078392 GGGCGTTAACATTTCCGAAGA 58.922 47.619 6.39 0.00 0.00 2.87
755 769 4.538917 GGCGTTAACATTTCCGAAGAAAA 58.461 39.130 6.39 0.00 44.91 2.29
757 771 5.631929 GGCGTTAACATTTCCGAAGAAAAAT 59.368 36.000 6.39 0.00 44.91 1.82
758 772 6.144886 GGCGTTAACATTTCCGAAGAAAAATT 59.855 34.615 6.39 0.00 44.91 1.82
759 773 7.326547 GGCGTTAACATTTCCGAAGAAAAATTA 59.673 33.333 6.39 0.00 44.91 1.40
760 774 8.856247 GCGTTAACATTTCCGAAGAAAAATTAT 58.144 29.630 6.39 0.00 44.91 1.28
771 785 6.016276 CCGAAGAAAAATTATGGGGTAGGATG 60.016 42.308 0.00 0.00 0.00 3.51
772 786 6.515035 CGAAGAAAAATTATGGGGTAGGATGC 60.515 42.308 0.00 0.00 0.00 3.91
773 787 5.147767 AGAAAAATTATGGGGTAGGATGCC 58.852 41.667 0.00 0.00 41.82 4.40
782 796 0.033642 GGTAGGATGCCCGAAGTAGC 59.966 60.000 0.00 0.00 33.16 3.58
783 797 0.033642 GTAGGATGCCCGAAGTAGCC 59.966 60.000 0.00 0.00 36.80 3.93
784 798 1.119574 TAGGATGCCCGAAGTAGCCC 61.120 60.000 0.00 0.00 37.34 5.19
785 799 2.111251 GATGCCCGAAGTAGCCCC 59.889 66.667 0.00 0.00 0.00 5.80
786 800 2.366972 ATGCCCGAAGTAGCCCCT 60.367 61.111 0.00 0.00 0.00 4.79
787 801 1.984288 GATGCCCGAAGTAGCCCCTT 61.984 60.000 0.00 0.00 0.00 3.95
788 802 2.124695 GCCCGAAGTAGCCCCTTG 60.125 66.667 0.00 0.00 0.00 3.61
789 803 2.666098 GCCCGAAGTAGCCCCTTGA 61.666 63.158 0.00 0.00 0.00 3.02
790 804 1.221021 CCCGAAGTAGCCCCTTGAC 59.779 63.158 0.00 0.00 0.00 3.18
791 805 1.221021 CCGAAGTAGCCCCTTGACC 59.779 63.158 0.00 0.00 0.00 4.02
792 806 1.550130 CCGAAGTAGCCCCTTGACCA 61.550 60.000 0.00 0.00 0.00 4.02
793 807 0.108138 CGAAGTAGCCCCTTGACCAG 60.108 60.000 0.00 0.00 0.00 4.00
794 808 0.984995 GAAGTAGCCCCTTGACCAGT 59.015 55.000 0.00 0.00 0.00 4.00
795 809 1.351350 GAAGTAGCCCCTTGACCAGTT 59.649 52.381 0.00 0.00 0.00 3.16
796 810 0.984995 AGTAGCCCCTTGACCAGTTC 59.015 55.000 0.00 0.00 0.00 3.01
797 811 0.035343 GTAGCCCCTTGACCAGTTCC 60.035 60.000 0.00 0.00 0.00 3.62
798 812 0.178873 TAGCCCCTTGACCAGTTCCT 60.179 55.000 0.00 0.00 0.00 3.36
799 813 0.178873 AGCCCCTTGACCAGTTCCTA 60.179 55.000 0.00 0.00 0.00 2.94
800 814 0.696501 GCCCCTTGACCAGTTCCTAA 59.303 55.000 0.00 0.00 0.00 2.69
801 815 1.285078 GCCCCTTGACCAGTTCCTAAT 59.715 52.381 0.00 0.00 0.00 1.73
802 816 2.291605 GCCCCTTGACCAGTTCCTAATT 60.292 50.000 0.00 0.00 0.00 1.40
834 848 0.670854 GGAGAGGCGTCTGTTGAACC 60.671 60.000 14.78 3.67 30.97 3.62
853 867 0.096454 CGACTCTGATCACGCGTGTA 59.904 55.000 35.74 23.61 0.00 2.90
893 908 2.079925 CAGAAGCTGGTCTAAAGCCAC 58.920 52.381 0.00 0.00 41.82 5.01
970 994 4.593864 GGGCTCTCCACCGCGATC 62.594 72.222 8.23 0.00 35.00 3.69
971 995 4.593864 GGCTCTCCACCGCGATCC 62.594 72.222 8.23 0.00 0.00 3.36
972 996 4.593864 GCTCTCCACCGCGATCCC 62.594 72.222 8.23 0.00 0.00 3.85
973 997 3.147595 CTCTCCACCGCGATCCCA 61.148 66.667 8.23 0.00 0.00 4.37
974 998 3.144120 CTCTCCACCGCGATCCCAG 62.144 68.421 8.23 0.00 0.00 4.45
975 999 3.147595 CTCCACCGCGATCCCAGA 61.148 66.667 8.23 0.00 0.00 3.86
976 1000 2.443952 TCCACCGCGATCCCAGAT 60.444 61.111 8.23 0.00 0.00 2.90
977 1001 2.280389 CCACCGCGATCCCAGATG 60.280 66.667 8.23 0.00 0.00 2.90
978 1002 2.280389 CACCGCGATCCCAGATGG 60.280 66.667 8.23 0.00 0.00 3.51
979 1003 4.241555 ACCGCGATCCCAGATGGC 62.242 66.667 8.23 1.89 0.00 4.40
1108 1132 1.961180 GACCGGTGAGGACCCATCAG 61.961 65.000 14.63 0.00 45.00 2.90
1151 1302 0.819666 CCCTAAATCTGCCCTTCGCC 60.820 60.000 0.00 0.00 36.24 5.54
1156 1307 2.579684 AATCTGCCCTTCGCCTCGTC 62.580 60.000 0.00 0.00 36.24 4.20
1306 2228 3.075005 CCCACGATCGACCCCACT 61.075 66.667 24.34 0.00 0.00 4.00
1473 2906 3.410631 TTGCATTGAAGTTACTCCGGA 57.589 42.857 2.93 2.93 0.00 5.14
1495 2928 1.084370 CCAAGACCGCGTTCATCTCC 61.084 60.000 6.39 0.00 0.00 3.71
1565 2998 8.562892 CCTTGTAATTAGGCTTGATCAATGTAG 58.437 37.037 8.96 0.00 0.00 2.74
1582 3132 8.039603 TCAATGTAGTGTAGCTGTTAAAATGG 57.960 34.615 0.00 0.00 0.00 3.16
1610 3162 7.147966 TGGTTCCTATGTGTATGTACTGTGTAG 60.148 40.741 0.00 0.00 0.00 2.74
1672 3224 3.598019 TTGCTTCAGAAATGCCCATTC 57.402 42.857 0.00 0.00 0.00 2.67
1711 3263 3.084786 CAACCTCCCAAAAGATCTGGAC 58.915 50.000 0.00 0.00 35.85 4.02
1803 4659 5.733676 TGTCATCTGTTATGCTTGAAGCTA 58.266 37.500 18.94 5.28 42.97 3.32
1820 4679 7.067496 TGAAGCTACCCTTATCCAGAATTAG 57.933 40.000 0.00 0.00 32.78 1.73
2009 4868 0.037590 TCCATGTGTTGCTACCACCC 59.962 55.000 0.00 0.00 31.71 4.61
2047 4906 6.902948 GGGATAAAAAGTTTGTTTTGTTTCGC 59.097 34.615 0.00 0.00 32.95 4.70
2411 5541 6.328934 TCTTCCACCTATACATTCAGCCATAA 59.671 38.462 0.00 0.00 0.00 1.90
2420 5553 4.770795 ACATTCAGCCATAAGAGTGTACC 58.229 43.478 0.00 0.00 33.67 3.34
2423 5556 5.593679 TTCAGCCATAAGAGTGTACCTAC 57.406 43.478 0.00 0.00 0.00 3.18
2720 6446 2.504367 CAAGTTCTGGACCGGAATGTT 58.496 47.619 18.80 12.40 31.07 2.71
2965 6696 2.358003 AGCTGCTCACGTTCTGGC 60.358 61.111 0.00 0.00 0.00 4.85
2966 6697 3.426568 GCTGCTCACGTTCTGGCC 61.427 66.667 0.00 0.00 0.00 5.36
2967 6698 2.743928 CTGCTCACGTTCTGGCCC 60.744 66.667 0.00 0.00 0.00 5.80
3195 6926 4.260784 GGTAAGCTAACATATGCACACAGC 60.261 45.833 1.58 4.74 45.96 4.40
3324 7058 4.862641 AGTACCCTACCATGAGCAAAAT 57.137 40.909 0.00 0.00 0.00 1.82
3455 7195 4.895889 TGGTATGTCTATCTCCACTCCTTG 59.104 45.833 0.00 0.00 0.00 3.61
3486 7228 6.043012 CACCTCCCATTTCTGATCTCTCTATT 59.957 42.308 0.00 0.00 0.00 1.73
3487 7229 6.043012 ACCTCCCATTTCTGATCTCTCTATTG 59.957 42.308 0.00 0.00 0.00 1.90
3538 7281 4.682860 GTCTTGGAATGAATGCAAACAGTG 59.317 41.667 0.00 0.00 39.03 3.66
3657 7545 6.910995 ACTAGTACTATAAGCATGCTAACGG 58.089 40.000 23.00 14.09 0.00 4.44
3788 7815 6.701145 TGGTACAATTGAGTTTGCTGTTAA 57.299 33.333 13.59 0.00 31.92 2.01
3824 7920 6.486253 TCTCAGTTTGATGCATTGTACTTC 57.514 37.500 0.00 0.00 0.00 3.01
3827 7923 5.997129 TCAGTTTGATGCATTGTACTTCTCA 59.003 36.000 0.00 0.00 0.00 3.27
3942 8042 3.118186 TGATGATGATGCACTGGATGTCA 60.118 43.478 0.00 0.00 0.00 3.58
3956 8056 7.443575 GCACTGGATGTCATCTGATTTTATAGT 59.556 37.037 12.54 2.05 0.00 2.12
3957 8057 8.771766 CACTGGATGTCATCTGATTTTATAGTG 58.228 37.037 12.54 9.00 0.00 2.74
3994 8098 9.547753 TTCCTTAAGTCATGCATAGTTAATCTC 57.452 33.333 0.00 0.00 0.00 2.75
4025 8129 7.636150 AGAAGTAATCTGTTTCCATCCAATG 57.364 36.000 0.00 0.00 36.88 2.82
4046 8150 7.389884 CCAATGGATTAGACATCTGGTATCTTG 59.610 40.741 0.00 0.00 0.00 3.02
4155 8259 1.302832 GTGTCCCACAAGCCTCAGG 60.303 63.158 0.00 0.00 34.08 3.86
4211 8315 6.470235 GTCAATTGCTTCATCAGAAAATACCG 59.530 38.462 0.00 0.00 32.35 4.02
4244 8348 4.813697 GCTCATCCTCAATTTAGGTCTGAC 59.186 45.833 5.59 0.00 37.91 3.51
4284 8388 2.045926 AGCAACTCATGGACCGGC 60.046 61.111 0.00 0.00 0.00 6.13
4372 8476 4.918810 TTCCTTCTTTTGCCTGAACTTC 57.081 40.909 0.00 0.00 0.00 3.01
4374 8490 4.137543 TCCTTCTTTTGCCTGAACTTCTC 58.862 43.478 0.00 0.00 0.00 2.87
4377 8493 5.443185 TTCTTTTGCCTGAACTTCTCATG 57.557 39.130 0.00 0.00 32.14 3.07
4442 8564 5.436175 TCTGTGGTGTTCAAAAGATTCAGA 58.564 37.500 0.00 0.00 0.00 3.27
4452 8574 4.520492 TCAAAAGATTCAGAACTTCAGGGC 59.480 41.667 0.00 0.00 0.00 5.19
4453 8575 3.795688 AAGATTCAGAACTTCAGGGCA 57.204 42.857 0.00 0.00 0.00 5.36
4456 8578 4.775236 AGATTCAGAACTTCAGGGCATAC 58.225 43.478 0.00 0.00 0.00 2.39
4457 8579 3.350219 TTCAGAACTTCAGGGCATACC 57.650 47.619 0.00 0.00 40.67 2.73
4482 8604 9.696917 CCATTTTTGCATATTTAATACTCCCTC 57.303 33.333 0.00 0.00 0.00 4.30
4483 8605 9.696917 CATTTTTGCATATTTAATACTCCCTCC 57.303 33.333 0.00 0.00 0.00 4.30
4484 8606 7.504924 TTTTGCATATTTAATACTCCCTCCG 57.495 36.000 0.00 0.00 0.00 4.63
4485 8607 5.818678 TGCATATTTAATACTCCCTCCGT 57.181 39.130 0.00 0.00 0.00 4.69
4486 8608 6.921486 TGCATATTTAATACTCCCTCCGTA 57.079 37.500 0.00 0.00 0.00 4.02
4487 8609 7.305813 TGCATATTTAATACTCCCTCCGTAA 57.694 36.000 0.00 0.00 0.00 3.18
4488 8610 7.737869 TGCATATTTAATACTCCCTCCGTAAA 58.262 34.615 0.00 0.00 0.00 2.01
4489 8611 7.658575 TGCATATTTAATACTCCCTCCGTAAAC 59.341 37.037 0.00 0.00 0.00 2.01
4490 8612 7.658575 GCATATTTAATACTCCCTCCGTAAACA 59.341 37.037 0.00 0.00 0.00 2.83
4491 8613 9.550406 CATATTTAATACTCCCTCCGTAAACAA 57.450 33.333 0.00 0.00 0.00 2.83
4498 8620 9.774413 AATACTCCCTCCGTAAACAAATATAAG 57.226 33.333 0.00 0.00 0.00 1.73
4499 8621 7.427989 ACTCCCTCCGTAAACAAATATAAGA 57.572 36.000 0.00 0.00 0.00 2.10
4500 8622 7.498443 ACTCCCTCCGTAAACAAATATAAGAG 58.502 38.462 0.00 0.00 0.00 2.85
4501 8623 6.285990 TCCCTCCGTAAACAAATATAAGAGC 58.714 40.000 0.00 0.00 0.00 4.09
4502 8624 5.176958 CCCTCCGTAAACAAATATAAGAGCG 59.823 44.000 0.00 0.00 0.00 5.03
4503 8625 5.751990 CCTCCGTAAACAAATATAAGAGCGT 59.248 40.000 0.00 0.00 0.00 5.07
4504 8626 6.257193 CCTCCGTAAACAAATATAAGAGCGTT 59.743 38.462 0.00 0.00 0.00 4.84
4505 8627 7.201582 CCTCCGTAAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
4506 8628 7.457868 TCCGTAAACAAATATAAGAGCGTTTG 58.542 34.615 0.00 0.00 37.52 2.93
4507 8629 6.685403 CCGTAAACAAATATAAGAGCGTTTGG 59.315 38.462 0.00 0.00 36.23 3.28
4508 8630 7.413219 CCGTAAACAAATATAAGAGCGTTTGGA 60.413 37.037 0.00 0.00 36.23 3.53
4509 8631 8.120465 CGTAAACAAATATAAGAGCGTTTGGAT 58.880 33.333 0.00 0.00 36.23 3.41
4510 8632 9.434559 GTAAACAAATATAAGAGCGTTTGGATC 57.565 33.333 0.00 0.00 36.23 3.36
4511 8633 7.624360 AACAAATATAAGAGCGTTTGGATCA 57.376 32.000 0.00 0.00 36.23 2.92
4512 8634 7.016361 ACAAATATAAGAGCGTTTGGATCAC 57.984 36.000 0.00 0.00 36.23 3.06
4513 8635 6.823689 ACAAATATAAGAGCGTTTGGATCACT 59.176 34.615 0.00 0.00 36.23 3.41
4514 8636 7.985184 ACAAATATAAGAGCGTTTGGATCACTA 59.015 33.333 0.00 0.00 36.23 2.74
4515 8637 8.826710 CAAATATAAGAGCGTTTGGATCACTAA 58.173 33.333 0.00 0.00 32.03 2.24
4516 8638 8.958119 AATATAAGAGCGTTTGGATCACTAAA 57.042 30.769 0.00 0.00 32.03 1.85
4517 8639 6.910536 ATAAGAGCGTTTGGATCACTAAAG 57.089 37.500 0.00 0.00 32.03 1.85
4518 8640 4.273148 AGAGCGTTTGGATCACTAAAGT 57.727 40.909 0.00 0.00 32.03 2.66
4519 8641 5.401531 AGAGCGTTTGGATCACTAAAGTA 57.598 39.130 0.00 0.00 32.03 2.24
4520 8642 5.411781 AGAGCGTTTGGATCACTAAAGTAG 58.588 41.667 0.00 0.00 32.03 2.57
4521 8643 5.047235 AGAGCGTTTGGATCACTAAAGTAGT 60.047 40.000 0.00 0.00 40.28 2.73
4535 8657 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
4536 8658 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
4537 8659 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
4538 8660 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
4553 8675 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4554 8676 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4555 8677 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
4556 8678 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
4557 8679 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
4564 8686 8.667592 ATTTCTTTACAGAGGGAGTACTTACT 57.332 34.615 0.00 0.00 39.71 2.24
4565 8687 7.463961 TTCTTTACAGAGGGAGTACTTACTG 57.536 40.000 0.00 7.33 36.50 2.74
4566 8688 6.550163 TCTTTACAGAGGGAGTACTTACTGT 58.450 40.000 20.20 20.20 40.74 3.55
4567 8689 6.433404 TCTTTACAGAGGGAGTACTTACTGTG 59.567 42.308 22.78 20.43 38.68 3.66
4568 8690 2.826725 ACAGAGGGAGTACTTACTGTGC 59.173 50.000 18.62 0.00 37.24 4.57
4569 8691 3.093057 CAGAGGGAGTACTTACTGTGCT 58.907 50.000 10.52 0.00 44.25 4.40
4570 8692 3.511934 CAGAGGGAGTACTTACTGTGCTT 59.488 47.826 10.52 0.00 41.66 3.91
4571 8693 4.705507 CAGAGGGAGTACTTACTGTGCTTA 59.294 45.833 10.52 0.00 41.66 3.09
4642 8773 8.496751 CGATACCATATGTATGTCCTACTATCG 58.503 40.741 1.24 0.56 40.31 2.92
4667 8798 2.072298 GTACTGCTCTTTGCCTGAGTG 58.928 52.381 0.00 0.00 42.00 3.51
4677 8808 1.604604 TGCCTGAGTGTGCCTTTTAC 58.395 50.000 0.00 0.00 0.00 2.01
4724 8944 8.315482 ACTTTTTCCCTTTTGCTTTTGTTACTA 58.685 29.630 0.00 0.00 0.00 1.82
4726 8946 9.674068 TTTTTCCCTTTTGCTTTTGTTACTATT 57.326 25.926 0.00 0.00 0.00 1.73
4727 8947 8.655651 TTTCCCTTTTGCTTTTGTTACTATTG 57.344 30.769 0.00 0.00 0.00 1.90
4729 8949 7.430441 TCCCTTTTGCTTTTGTTACTATTGTC 58.570 34.615 0.00 0.00 0.00 3.18
4784 9034 7.938490 ACATGCATGTTCCACAATCTATATGTA 59.062 33.333 26.61 0.00 37.90 2.29
4808 9058 1.686115 CCCCCTGCTTAAGTGGGATTG 60.686 57.143 26.82 15.51 43.47 2.67
4822 9073 4.907875 AGTGGGATTGCAGTATATACCAGT 59.092 41.667 9.32 1.17 0.00 4.00
4830 9081 9.326413 GATTGCAGTATATACCAGTTACAAAGT 57.674 33.333 9.32 0.00 0.00 2.66
4943 9451 5.106515 GCTTGTGGATCCTAACTTTGAAGTC 60.107 44.000 14.23 0.00 38.57 3.01
4964 9472 3.132111 TCGTTGTTCAGCCTGCAGATATA 59.868 43.478 17.39 0.00 0.00 0.86
5117 9625 6.223351 ACCTACTTAGCTGACAAGGTTATC 57.777 41.667 0.00 0.00 33.59 1.75
5159 9667 4.028852 TGTAGACTGTACTGCTAATGCG 57.971 45.455 0.00 0.00 43.34 4.73
5221 9729 1.938585 AGTGCAGCTACCCAGAGTTA 58.061 50.000 0.00 0.00 0.00 2.24
5222 9730 2.472029 AGTGCAGCTACCCAGAGTTAT 58.528 47.619 0.00 0.00 0.00 1.89
5223 9731 3.643237 AGTGCAGCTACCCAGAGTTATA 58.357 45.455 0.00 0.00 0.00 0.98
5224 9732 4.030913 AGTGCAGCTACCCAGAGTTATAA 58.969 43.478 0.00 0.00 0.00 0.98
5250 9758 8.165239 TCAACAAAAGTTATAATCACAGCACT 57.835 30.769 0.00 0.00 0.00 4.40
5275 9783 6.248433 AGCTCAAGATGGTTTCTTATTTCCA 58.752 36.000 0.00 0.00 42.98 3.53
5311 9819 8.167392 TCTGAATTTGGACCTATTTGTTCCTTA 58.833 33.333 0.00 0.00 0.00 2.69
5316 9824 8.575649 TTTGGACCTATTTGTTCCTTAATCTC 57.424 34.615 0.00 0.00 0.00 2.75
5319 9827 7.182026 TGGACCTATTTGTTCCTTAATCTCTCA 59.818 37.037 0.00 0.00 0.00 3.27
5320 9828 7.713073 GGACCTATTTGTTCCTTAATCTCTCAG 59.287 40.741 0.00 0.00 0.00 3.35
5321 9829 8.380742 ACCTATTTGTTCCTTAATCTCTCAGA 57.619 34.615 0.00 0.00 0.00 3.27
5323 9831 9.844257 CCTATTTGTTCCTTAATCTCTCAGAAT 57.156 33.333 0.00 0.00 0.00 2.40
5353 9893 4.536765 ACTTCAGTTGGTGGTTTTCATCT 58.463 39.130 0.00 0.00 0.00 2.90
5359 9899 7.284074 TCAGTTGGTGGTTTTCATCTACTAAA 58.716 34.615 0.00 0.00 39.82 1.85
5573 10113 1.228367 ACTCTGCCTGGGTTGCTTG 60.228 57.895 0.00 0.00 0.00 4.01
5577 10117 2.029518 GCCTGGGTTGCTTGTTGC 59.970 61.111 0.00 0.00 43.25 4.17
5608 10148 5.656416 AGAAACTGAACTGGATTTGTCCAAA 59.344 36.000 0.00 0.00 39.61 3.28
5620 10160 2.121832 TCCAAAGGGGAGGCGAGA 59.878 61.111 0.00 0.00 42.15 4.04
5621 10161 2.269241 CCAAAGGGGAGGCGAGAC 59.731 66.667 0.00 0.00 40.01 3.36
5622 10162 2.592993 CCAAAGGGGAGGCGAGACA 61.593 63.158 0.00 0.00 40.01 3.41
5623 10163 1.376037 CAAAGGGGAGGCGAGACAC 60.376 63.158 0.00 0.00 0.00 3.67
5624 10164 2.943978 AAAGGGGAGGCGAGACACG 61.944 63.158 0.00 0.00 45.66 4.49
5632 10172 4.373116 GCGAGACACGGCAAGGGA 62.373 66.667 0.00 0.00 42.83 4.20
5633 10173 2.125912 CGAGACACGGCAAGGGAG 60.126 66.667 0.00 0.00 38.46 4.30
5634 10174 2.435059 GAGACACGGCAAGGGAGC 60.435 66.667 0.00 0.00 0.00 4.70
5635 10175 4.379243 AGACACGGCAAGGGAGCG 62.379 66.667 0.00 0.00 34.64 5.03
5636 10176 4.373116 GACACGGCAAGGGAGCGA 62.373 66.667 0.00 0.00 34.64 4.93
5637 10177 4.681978 ACACGGCAAGGGAGCGAC 62.682 66.667 0.00 0.00 34.64 5.19
5651 10191 4.838486 CGACGGCTGGAGCGTCTC 62.838 72.222 16.20 0.00 43.26 3.36
5652 10192 4.838486 GACGGCTGGAGCGTCTCG 62.838 72.222 13.07 5.33 43.26 4.04
5654 10194 4.544689 CGGCTGGAGCGTCTCGAG 62.545 72.222 5.93 5.93 43.26 4.04
5655 10195 4.200283 GGCTGGAGCGTCTCGAGG 62.200 72.222 13.56 0.00 43.26 4.63
5656 10196 3.134792 GCTGGAGCGTCTCGAGGA 61.135 66.667 13.56 0.00 36.93 3.71
5657 10197 3.106552 CTGGAGCGTCTCGAGGAG 58.893 66.667 13.56 8.13 33.65 3.69
5658 10198 3.119709 CTGGAGCGTCTCGAGGAGC 62.120 68.421 20.29 20.29 33.65 4.70
5659 10199 3.134792 GGAGCGTCTCGAGGAGCA 61.135 66.667 26.35 1.93 0.00 4.26
5831 10413 5.416013 CCAGAAGAAGTAATCCCAACCTTTC 59.584 44.000 0.00 0.00 0.00 2.62
5855 10437 0.838122 CCCTCCTGAACCTGGAGTGT 60.838 60.000 15.56 0.00 44.60 3.55
6019 10608 3.565482 AGATGAAGCAACACGTTTGATGT 59.435 39.130 12.62 0.00 0.00 3.06
6072 10662 5.173535 TGCTTGGGCTTTTCTCTGAAGAAA 61.174 41.667 0.00 0.00 42.54 2.52
6098 10688 1.334689 GGGTGTTGCTTGAACTTACGC 60.335 52.381 0.00 0.00 35.37 4.42
6123 10713 7.467623 CGACTACTACGTTTTCTGTAATAGGT 58.532 38.462 0.00 0.00 28.57 3.08
6164 10759 5.248640 CCCCATAGCTTGTATTCAGGTATG 58.751 45.833 10.76 10.76 41.16 2.39
6165 10760 5.013079 CCCCATAGCTTGTATTCAGGTATGA 59.987 44.000 16.90 0.00 42.94 2.15
6202 10797 3.485463 TTTCCTGGTGAACATCGAACT 57.515 42.857 0.00 0.00 31.05 3.01
6205 10800 2.567169 TCCTGGTGAACATCGAACTCAT 59.433 45.455 0.00 0.00 0.00 2.90
6211 10806 5.812127 TGGTGAACATCGAACTCATAATCTG 59.188 40.000 0.00 0.00 0.00 2.90
6226 10821 9.553064 ACTCATAATCTGCCTACTATTTTCAAG 57.447 33.333 0.00 0.00 0.00 3.02
6277 10872 5.715070 GCAAGTCTATGCCTCGTATAATCT 58.285 41.667 0.00 0.00 40.49 2.40
6280 10875 7.148722 GCAAGTCTATGCCTCGTATAATCTTTC 60.149 40.741 0.00 0.00 40.49 2.62
6282 10877 5.800941 GTCTATGCCTCGTATAATCTTTCGG 59.199 44.000 0.00 0.00 0.00 4.30
6289 10884 3.057734 CGTATAATCTTTCGGCAGACCC 58.942 50.000 0.00 0.00 0.00 4.46
6290 10885 2.640316 ATAATCTTTCGGCAGACCCC 57.360 50.000 0.00 0.00 0.00 4.95
6291 10886 1.281419 TAATCTTTCGGCAGACCCCA 58.719 50.000 0.00 0.00 0.00 4.96
6292 10887 0.322546 AATCTTTCGGCAGACCCCAC 60.323 55.000 0.00 0.00 0.00 4.61
6293 10888 2.198304 ATCTTTCGGCAGACCCCACC 62.198 60.000 0.00 0.00 0.00 4.61
6294 10889 2.852075 TTTCGGCAGACCCCACCT 60.852 61.111 0.00 0.00 0.00 4.00
6295 10890 3.190738 TTTCGGCAGACCCCACCTG 62.191 63.158 0.00 0.00 34.88 4.00
6298 10893 4.351054 GGCAGACCCCACCTGGTG 62.351 72.222 20.01 20.01 39.24 4.17
6323 10918 1.699634 AGCTTCTAGCACTGGGTTTGA 59.300 47.619 1.09 0.00 45.56 2.69
6399 11012 5.529581 TTTCACTTGAAAATCCCCTGTTC 57.470 39.130 1.81 0.00 40.68 3.18
6404 11017 1.272425 TGAAAATCCCCTGTTCGGCAT 60.272 47.619 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 107 0.037232 GCTGTAGACCAGACCACACC 60.037 60.000 0.00 0.00 44.49 4.16
121 124 4.060205 GTTTTGAAATCATGGCAACTGCT 58.940 39.130 1.06 0.00 41.70 4.24
155 158 5.162075 CAACTGTCTAGTGTTAGTAGGTGC 58.838 45.833 0.00 0.00 37.19 5.01
172 175 0.249120 TAGCGCTACATGGCAACTGT 59.751 50.000 14.45 0.00 37.61 3.55
265 272 6.096846 ACTCTTTCTTTTTACATGGCAACTGT 59.903 34.615 0.00 0.00 37.61 3.55
292 300 1.067693 CGTGCACGTAAGCAGATGAA 58.932 50.000 30.50 0.00 46.69 2.57
478 491 3.081133 CGTTTGTCATCTCGCCCG 58.919 61.111 0.00 0.00 0.00 6.13
489 502 2.044848 TGGTGTGTGGGCGTTTGT 60.045 55.556 0.00 0.00 0.00 2.83
606 620 3.871574 GCGCGTGTGTGGTGTGTT 61.872 61.111 8.43 0.00 0.00 3.32
640 654 6.516739 TGGCATGTTTTGACCGATTTTATA 57.483 33.333 0.00 0.00 29.16 0.98
675 689 0.313987 CATCGCCGTCCAGCAGTATA 59.686 55.000 0.00 0.00 0.00 1.47
696 710 1.302431 CCATCTCAACCACACGCCA 60.302 57.895 0.00 0.00 0.00 5.69
727 741 1.609555 GGAAATGTTAACGCCCACACA 59.390 47.619 0.26 0.00 0.00 3.72
751 765 4.283467 GGGCATCCTACCCCATAATTTTTC 59.717 45.833 0.00 0.00 42.01 2.29
752 766 4.231273 GGGCATCCTACCCCATAATTTTT 58.769 43.478 0.00 0.00 42.01 1.94
755 769 1.354368 CGGGCATCCTACCCCATAATT 59.646 52.381 0.00 0.00 45.37 1.40
757 771 0.104882 TCGGGCATCCTACCCCATAA 60.105 55.000 0.00 0.00 45.37 1.90
758 772 0.104882 TTCGGGCATCCTACCCCATA 60.105 55.000 0.00 0.00 45.37 2.74
759 773 1.385347 TTCGGGCATCCTACCCCAT 60.385 57.895 0.00 0.00 45.37 4.00
760 774 2.041430 TTCGGGCATCCTACCCCA 59.959 61.111 0.00 0.00 45.37 4.96
771 785 2.124695 CAAGGGGCTACTTCGGGC 60.125 66.667 0.00 0.00 0.00 6.13
772 786 1.221021 GTCAAGGGGCTACTTCGGG 59.779 63.158 0.00 0.00 0.00 5.14
773 787 1.221021 GGTCAAGGGGCTACTTCGG 59.779 63.158 0.00 0.00 0.00 4.30
774 788 0.108138 CTGGTCAAGGGGCTACTTCG 60.108 60.000 0.00 0.00 0.00 3.79
775 789 0.984995 ACTGGTCAAGGGGCTACTTC 59.015 55.000 0.00 0.00 0.00 3.01
776 790 1.351350 GAACTGGTCAAGGGGCTACTT 59.649 52.381 0.00 0.00 0.00 2.24
777 791 0.984995 GAACTGGTCAAGGGGCTACT 59.015 55.000 0.00 0.00 0.00 2.57
778 792 0.035343 GGAACTGGTCAAGGGGCTAC 60.035 60.000 0.00 0.00 0.00 3.58
779 793 0.178873 AGGAACTGGTCAAGGGGCTA 60.179 55.000 0.00 0.00 37.18 3.93
780 794 0.178873 TAGGAACTGGTCAAGGGGCT 60.179 55.000 0.00 0.00 41.52 5.19
781 795 0.696501 TTAGGAACTGGTCAAGGGGC 59.303 55.000 0.00 0.00 41.52 5.80
782 796 3.739401 AATTAGGAACTGGTCAAGGGG 57.261 47.619 0.00 0.00 41.52 4.79
783 797 3.689649 CGAAATTAGGAACTGGTCAAGGG 59.310 47.826 0.00 0.00 41.52 3.95
784 798 4.154195 CACGAAATTAGGAACTGGTCAAGG 59.846 45.833 0.00 0.00 41.52 3.61
785 799 4.154195 CCACGAAATTAGGAACTGGTCAAG 59.846 45.833 0.00 0.00 41.52 3.02
786 800 4.069304 CCACGAAATTAGGAACTGGTCAA 58.931 43.478 0.00 0.00 41.52 3.18
787 801 3.558321 CCCACGAAATTAGGAACTGGTCA 60.558 47.826 0.00 0.00 41.52 4.02
788 802 3.007635 CCCACGAAATTAGGAACTGGTC 58.992 50.000 0.00 0.00 41.52 4.02
789 803 2.374170 ACCCACGAAATTAGGAACTGGT 59.626 45.455 0.00 0.00 41.52 4.00
790 804 3.067684 ACCCACGAAATTAGGAACTGG 57.932 47.619 0.00 0.00 41.52 4.00
791 805 5.484715 TCTTACCCACGAAATTAGGAACTG 58.515 41.667 0.00 0.00 41.52 3.16
792 806 5.338137 CCTCTTACCCACGAAATTAGGAACT 60.338 44.000 0.00 0.00 46.37 3.01
793 807 4.874396 CCTCTTACCCACGAAATTAGGAAC 59.126 45.833 0.00 0.00 0.00 3.62
794 808 4.778958 TCCTCTTACCCACGAAATTAGGAA 59.221 41.667 0.00 0.00 0.00 3.36
795 809 4.355549 TCCTCTTACCCACGAAATTAGGA 58.644 43.478 0.00 0.00 0.00 2.94
796 810 4.404715 TCTCCTCTTACCCACGAAATTAGG 59.595 45.833 0.00 0.00 0.00 2.69
797 811 5.452077 CCTCTCCTCTTACCCACGAAATTAG 60.452 48.000 0.00 0.00 0.00 1.73
798 812 4.404715 CCTCTCCTCTTACCCACGAAATTA 59.595 45.833 0.00 0.00 0.00 1.40
799 813 3.197983 CCTCTCCTCTTACCCACGAAATT 59.802 47.826 0.00 0.00 0.00 1.82
800 814 2.766828 CCTCTCCTCTTACCCACGAAAT 59.233 50.000 0.00 0.00 0.00 2.17
801 815 2.176889 CCTCTCCTCTTACCCACGAAA 58.823 52.381 0.00 0.00 0.00 3.46
802 816 1.848652 CCTCTCCTCTTACCCACGAA 58.151 55.000 0.00 0.00 0.00 3.85
834 848 0.096454 TACACGCGTGATCAGAGTCG 59.904 55.000 42.94 15.23 0.00 4.18
853 867 6.024552 TCTGAAACAAGCACAAGAGTTTTT 57.975 33.333 0.00 0.00 34.62 1.94
893 908 1.376037 GGAGGCGGTCAGACCTTTG 60.376 63.158 17.95 3.31 36.05 2.77
972 996 4.005472 GATTCGCGCCGCCATCTG 62.005 66.667 2.28 0.00 0.00 2.90
984 1008 1.010935 CCATCTGGGATCGCGATTCG 61.011 60.000 24.55 9.58 40.01 3.34
985 1009 1.294659 GCCATCTGGGATCGCGATTC 61.295 60.000 24.55 22.00 40.01 2.52
986 1010 1.302033 GCCATCTGGGATCGCGATT 60.302 57.895 24.55 6.93 40.01 3.34
987 1011 2.345244 GCCATCTGGGATCGCGAT 59.655 61.111 23.97 23.97 40.01 4.58
988 1012 4.284860 CGCCATCTGGGATCGCGA 62.285 66.667 13.09 13.09 45.41 5.87
1066 1090 4.821589 GACGGGGCAGCTCTTCCG 62.822 72.222 14.33 14.33 46.95 4.30
1108 1132 1.025647 ACACGAGAGAGAGTACGGGC 61.026 60.000 0.00 0.00 32.15 6.13
1151 1302 1.140407 GGCCAAATCGAGACGACGAG 61.140 60.000 0.00 0.00 45.22 4.18
1156 1307 3.564027 GCCGGCCAAATCGAGACG 61.564 66.667 18.11 0.00 0.00 4.18
1306 2228 7.701539 ATCATGTCAAAACAACTATTAGCCA 57.298 32.000 0.00 0.00 39.30 4.75
1424 2853 3.087031 CTGCACAGGAAACCATCATCTT 58.913 45.455 0.00 0.00 0.00 2.40
1473 2906 0.389948 GATGAACGCGGTCTTGGACT 60.390 55.000 26.60 2.65 32.47 3.85
1495 2928 0.877071 AACCAATGCACAGCTCTTCG 59.123 50.000 0.00 0.00 0.00 3.79
1565 2998 3.824443 ACCACCCATTTTAACAGCTACAC 59.176 43.478 0.00 0.00 0.00 2.90
1582 3132 5.105064 ACAGTACATACACATAGGAACCACC 60.105 44.000 0.00 0.00 39.35 4.61
1610 3162 7.066284 ACAAGTGCATGAGAAGACAATTATACC 59.934 37.037 0.00 0.00 0.00 2.73
1672 3224 1.957668 TGATGATCTGAATGGCACCG 58.042 50.000 0.00 0.00 0.00 4.94
1711 3263 2.332063 AGCGATGGGTGGTATCTTTG 57.668 50.000 0.00 0.00 0.00 2.77
1803 4659 7.515514 AGATCATCACTAATTCTGGATAAGGGT 59.484 37.037 0.00 0.00 0.00 4.34
1820 4679 1.526041 CTGCAAGCGCTAGATCATCAC 59.474 52.381 12.05 0.00 39.64 3.06
2009 4868 8.731275 AACTTTTTATCCCAAAAGAAAACTGG 57.269 30.769 11.85 0.00 43.70 4.00
2047 4906 2.421424 GCTTGTGCAGTTCATAGAAGGG 59.579 50.000 0.00 0.00 39.41 3.95
2420 5553 7.287927 TCCAGGACCTCAACAATATTAGAGTAG 59.712 40.741 0.00 1.37 0.00 2.57
2423 5556 6.485830 TCCAGGACCTCAACAATATTAGAG 57.514 41.667 0.00 0.00 0.00 2.43
2465 5839 8.922931 TGCCATAATATGTGTCATGAAGTAAT 57.077 30.769 0.00 0.00 0.00 1.89
2720 6446 3.557898 GCTCACCACCAGAAAGATCTTCA 60.558 47.826 8.78 0.00 32.03 3.02
2965 6696 4.876107 ACGATTACATAGCTGAAAACAGGG 59.124 41.667 0.00 0.00 0.00 4.45
2966 6697 6.128282 ACAACGATTACATAGCTGAAAACAGG 60.128 38.462 0.00 0.00 0.00 4.00
2967 6698 6.738200 CACAACGATTACATAGCTGAAAACAG 59.262 38.462 0.00 0.00 0.00 3.16
3324 7058 7.014134 TGACAGTGAGCTTGAAATTTCCAATTA 59.986 33.333 15.48 0.00 0.00 1.40
3455 7195 0.329596 AGAAATGGGAGGTGGTGAGC 59.670 55.000 0.00 0.00 0.00 4.26
3486 7228 7.117092 TCGATGACTTGAACGATAAAAATGTCA 59.883 33.333 0.00 0.00 36.55 3.58
3487 7229 7.453034 TCGATGACTTGAACGATAAAAATGTC 58.547 34.615 0.00 0.00 0.00 3.06
3554 7297 7.492344 GCCATGAGGACAAAATTTCGATTTTAT 59.508 33.333 0.00 0.00 36.89 1.40
3555 7298 6.811170 GCCATGAGGACAAAATTTCGATTTTA 59.189 34.615 0.00 0.00 36.89 1.52
3556 7299 5.639082 GCCATGAGGACAAAATTTCGATTTT 59.361 36.000 0.00 0.00 36.89 1.82
3562 7305 7.147976 GGTATATGCCATGAGGACAAAATTTC 58.852 38.462 4.76 0.00 36.89 2.17
3565 7308 5.536161 GTGGTATATGCCATGAGGACAAAAT 59.464 40.000 16.13 0.00 41.08 1.82
3570 7313 2.299013 TCGTGGTATATGCCATGAGGAC 59.701 50.000 25.75 7.99 46.33 3.85
3657 7545 3.618690 ATGGCACTCTAGAACCAGAAC 57.381 47.619 12.79 0.00 35.20 3.01
3743 7769 5.163385 CCATTATGTTTCCATCAGCACCAAT 60.163 40.000 0.00 0.00 32.29 3.16
3956 8056 7.541162 CATGACTTAAGGAATCTTGCAAATCA 58.459 34.615 7.53 0.00 34.59 2.57
3957 8057 6.474751 GCATGACTTAAGGAATCTTGCAAATC 59.525 38.462 19.28 0.00 41.03 2.17
3962 8062 4.970662 TGCATGACTTAAGGAATCTTGC 57.029 40.909 18.18 18.18 41.47 4.01
4025 8129 8.184304 ACTACAAGATACCAGATGTCTAATCC 57.816 38.462 0.00 0.00 0.00 3.01
4094 8198 2.102252 CTCAGCTCCTTCCACAGTATCC 59.898 54.545 0.00 0.00 0.00 2.59
4155 8259 4.202253 ACCCTGGAATTTTGTTTCAAGCTC 60.202 41.667 0.00 0.00 0.00 4.09
4211 8315 3.204306 TGAGGATGAGCACATGAATCC 57.796 47.619 0.00 0.00 39.15 3.01
4244 8348 6.523201 GCTCAATTTGTAGTGGTTTAATGACG 59.477 38.462 0.00 0.00 0.00 4.35
4284 8388 8.335532 TCTCCACCTGATAAATTTGTAACTTG 57.664 34.615 0.00 0.00 0.00 3.16
4415 8537 5.913137 ATCTTTTGAACACCACAGAACAA 57.087 34.783 0.00 0.00 0.00 2.83
4442 8564 4.563374 GCAAAAATGGTATGCCCTGAAGTT 60.563 41.667 0.00 0.00 34.03 2.66
4456 8578 9.696917 GAGGGAGTATTAAATATGCAAAAATGG 57.303 33.333 0.00 0.00 0.00 3.16
4457 8579 9.696917 GGAGGGAGTATTAAATATGCAAAAATG 57.303 33.333 0.00 0.00 0.00 2.32
4478 8600 5.176958 CGCTCTTATATTTGTTTACGGAGGG 59.823 44.000 0.00 0.00 0.00 4.30
4479 8601 5.751990 ACGCTCTTATATTTGTTTACGGAGG 59.248 40.000 0.00 0.00 0.00 4.30
4482 8604 6.685403 CCAAACGCTCTTATATTTGTTTACGG 59.315 38.462 0.00 0.00 31.48 4.02
4483 8605 7.457868 TCCAAACGCTCTTATATTTGTTTACG 58.542 34.615 0.00 0.00 31.48 3.18
4484 8606 9.434559 GATCCAAACGCTCTTATATTTGTTTAC 57.565 33.333 0.00 0.00 31.48 2.01
4485 8607 9.168451 TGATCCAAACGCTCTTATATTTGTTTA 57.832 29.630 0.00 0.00 31.48 2.01
4486 8608 7.968405 GTGATCCAAACGCTCTTATATTTGTTT 59.032 33.333 0.00 0.00 31.48 2.83
4487 8609 7.336931 AGTGATCCAAACGCTCTTATATTTGTT 59.663 33.333 0.00 0.00 31.48 2.83
4488 8610 6.823689 AGTGATCCAAACGCTCTTATATTTGT 59.176 34.615 0.00 0.00 31.48 2.83
4489 8611 7.251704 AGTGATCCAAACGCTCTTATATTTG 57.748 36.000 0.00 0.00 32.89 2.32
4490 8612 8.958119 TTAGTGATCCAAACGCTCTTATATTT 57.042 30.769 0.00 0.00 0.00 1.40
4491 8613 8.958119 TTTAGTGATCCAAACGCTCTTATATT 57.042 30.769 0.00 0.00 0.00 1.28
4492 8614 8.204836 ACTTTAGTGATCCAAACGCTCTTATAT 58.795 33.333 0.00 0.00 0.00 0.86
4493 8615 7.553334 ACTTTAGTGATCCAAACGCTCTTATA 58.447 34.615 0.00 0.00 0.00 0.98
4494 8616 6.407202 ACTTTAGTGATCCAAACGCTCTTAT 58.593 36.000 0.00 0.00 0.00 1.73
4495 8617 5.790593 ACTTTAGTGATCCAAACGCTCTTA 58.209 37.500 0.00 0.00 0.00 2.10
4496 8618 4.642429 ACTTTAGTGATCCAAACGCTCTT 58.358 39.130 0.00 0.00 0.00 2.85
4497 8619 4.273148 ACTTTAGTGATCCAAACGCTCT 57.727 40.909 0.00 0.00 0.00 4.09
4498 8620 5.169295 ACTACTTTAGTGATCCAAACGCTC 58.831 41.667 0.00 0.00 37.69 5.03
4499 8621 5.148651 ACTACTTTAGTGATCCAAACGCT 57.851 39.130 0.00 0.00 37.69 5.07
4511 8633 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
4512 8634 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
4527 8649 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4528 8650 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4529 8651 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4530 8652 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4531 8653 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4538 8660 9.765295 AGTAAGTACTCCCTCTGTAAAGAAATA 57.235 33.333 0.00 0.00 0.00 1.40
4539 8661 8.532819 CAGTAAGTACTCCCTCTGTAAAGAAAT 58.467 37.037 0.00 0.00 33.46 2.17
4540 8662 7.508296 ACAGTAAGTACTCCCTCTGTAAAGAAA 59.492 37.037 15.49 0.00 34.95 2.52
4541 8663 7.008941 ACAGTAAGTACTCCCTCTGTAAAGAA 58.991 38.462 15.49 0.00 34.95 2.52
4542 8664 6.433404 CACAGTAAGTACTCCCTCTGTAAAGA 59.567 42.308 16.16 0.00 34.95 2.52
4543 8665 6.622549 CACAGTAAGTACTCCCTCTGTAAAG 58.377 44.000 16.16 6.55 34.95 1.85
4544 8666 5.047519 GCACAGTAAGTACTCCCTCTGTAAA 60.048 44.000 16.16 0.00 34.95 2.01
4545 8667 4.461781 GCACAGTAAGTACTCCCTCTGTAA 59.538 45.833 16.16 0.00 34.95 2.41
4546 8668 4.015084 GCACAGTAAGTACTCCCTCTGTA 58.985 47.826 16.16 0.00 34.95 2.74
4547 8669 2.826725 GCACAGTAAGTACTCCCTCTGT 59.173 50.000 12.92 12.92 36.73 3.41
4548 8670 3.093057 AGCACAGTAAGTACTCCCTCTG 58.907 50.000 0.00 5.54 33.46 3.35
4549 8671 3.459710 AGCACAGTAAGTACTCCCTCT 57.540 47.619 0.00 0.00 33.46 3.69
4550 8672 5.855740 ATAAGCACAGTAAGTACTCCCTC 57.144 43.478 0.00 0.00 33.46 4.30
4551 8673 6.622427 AAATAAGCACAGTAAGTACTCCCT 57.378 37.500 0.00 0.00 33.46 4.20
4552 8674 6.403309 GCAAAATAAGCACAGTAAGTACTCCC 60.403 42.308 0.00 0.00 33.46 4.30
4553 8675 6.403309 GGCAAAATAAGCACAGTAAGTACTCC 60.403 42.308 0.00 0.00 33.46 3.85
4554 8676 6.371825 AGGCAAAATAAGCACAGTAAGTACTC 59.628 38.462 0.00 0.00 33.46 2.59
4555 8677 6.238648 AGGCAAAATAAGCACAGTAAGTACT 58.761 36.000 0.00 0.00 36.90 2.73
4556 8678 6.496338 AGGCAAAATAAGCACAGTAAGTAC 57.504 37.500 0.00 0.00 0.00 2.73
4557 8679 7.519032 AAAGGCAAAATAAGCACAGTAAGTA 57.481 32.000 0.00 0.00 0.00 2.24
4558 8680 6.405278 AAAGGCAAAATAAGCACAGTAAGT 57.595 33.333 0.00 0.00 0.00 2.24
4559 8681 6.701400 ACAAAAGGCAAAATAAGCACAGTAAG 59.299 34.615 0.00 0.00 0.00 2.34
4560 8682 6.578023 ACAAAAGGCAAAATAAGCACAGTAA 58.422 32.000 0.00 0.00 0.00 2.24
4561 8683 6.155475 ACAAAAGGCAAAATAAGCACAGTA 57.845 33.333 0.00 0.00 0.00 2.74
4562 8684 5.022282 ACAAAAGGCAAAATAAGCACAGT 57.978 34.783 0.00 0.00 0.00 3.55
4563 8685 5.989551 AACAAAAGGCAAAATAAGCACAG 57.010 34.783 0.00 0.00 0.00 3.66
4564 8686 6.749923 AAAACAAAAGGCAAAATAAGCACA 57.250 29.167 0.00 0.00 0.00 4.57
4565 8687 7.026562 ACAAAAACAAAAGGCAAAATAAGCAC 58.973 30.769 0.00 0.00 0.00 4.40
4566 8688 7.150783 ACAAAAACAAAAGGCAAAATAAGCA 57.849 28.000 0.00 0.00 0.00 3.91
4567 8689 9.005180 GTAACAAAAACAAAAGGCAAAATAAGC 57.995 29.630 0.00 0.00 0.00 3.09
4570 8692 9.220767 ACAGTAACAAAAACAAAAGGCAAAATA 57.779 25.926 0.00 0.00 0.00 1.40
4571 8693 8.105097 ACAGTAACAAAAACAAAAGGCAAAAT 57.895 26.923 0.00 0.00 0.00 1.82
4616 8738 8.496751 CGATAGTAGGACATACATATGGTATCG 58.503 40.741 7.80 8.81 40.76 2.92
4699 8830 7.609760 AGTAACAAAAGCAAAAGGGAAAAAG 57.390 32.000 0.00 0.00 0.00 2.27
4784 9034 0.698818 CCACTTAAGCAGGGGGAAGT 59.301 55.000 1.29 0.00 43.59 3.01
4822 9073 4.400120 ACGAAGGGCCAAATACTTTGTAA 58.600 39.130 6.18 0.00 37.14 2.41
4830 9081 1.283613 ACATGGACGAAGGGCCAAATA 59.716 47.619 6.18 0.00 39.37 1.40
4832 9083 0.893270 CACATGGACGAAGGGCCAAA 60.893 55.000 6.18 0.00 39.37 3.28
4837 9088 1.302431 TGCACACATGGACGAAGGG 60.302 57.895 0.00 0.00 0.00 3.95
4912 9420 0.035630 AGGATCCACAAGCTGACAGC 60.036 55.000 20.12 20.12 42.84 4.40
4943 9451 1.725641 TATCTGCAGGCTGAACAACG 58.274 50.000 20.86 0.00 0.00 4.10
4964 9472 4.993584 GCACTTGGTTCATCGATCAGATAT 59.006 41.667 0.00 0.00 37.52 1.63
5117 9625 2.496828 AAGGCCGTCCCTCGTAAACG 62.497 60.000 0.00 0.00 45.62 3.60
5159 9667 3.961408 TCCCAGATAGTAAAGTCTGAGGC 59.039 47.826 4.08 0.00 43.50 4.70
5223 9731 9.410556 GTGCTGTGATTATAACTTTTGTTGATT 57.589 29.630 0.00 0.00 43.41 2.57
5224 9732 8.796475 AGTGCTGTGATTATAACTTTTGTTGAT 58.204 29.630 0.00 0.00 43.41 2.57
5259 9767 8.704668 AGTTGAAGTTTGGAAATAAGAAACCAT 58.295 29.630 0.00 0.00 31.21 3.55
5275 9783 5.893824 AGGTCCAAATTCAGAGTTGAAGTTT 59.106 36.000 0.79 0.00 46.14 2.66
5573 10113 3.879892 AGTTCAGTTTCTTCTCCAGCAAC 59.120 43.478 0.00 0.00 0.00 4.17
5577 10117 4.342862 TCCAGTTCAGTTTCTTCTCCAG 57.657 45.455 0.00 0.00 0.00 3.86
5618 10158 4.379243 CGCTCCCTTGCCGTGTCT 62.379 66.667 0.00 0.00 0.00 3.41
5619 10159 4.373116 TCGCTCCCTTGCCGTGTC 62.373 66.667 0.00 0.00 0.00 3.67
5620 10160 4.681978 GTCGCTCCCTTGCCGTGT 62.682 66.667 0.00 0.00 0.00 4.49
5634 10174 4.838486 GAGACGCTCCAGCCGTCG 62.838 72.222 13.93 0.00 43.73 5.12
5635 10175 4.838486 CGAGACGCTCCAGCCGTC 62.838 72.222 12.68 12.68 41.40 4.79
5637 10177 4.544689 CTCGAGACGCTCCAGCCG 62.545 72.222 6.58 0.00 37.91 5.52
5638 10178 4.200283 CCTCGAGACGCTCCAGCC 62.200 72.222 15.71 0.00 37.91 4.85
5639 10179 3.119709 CTCCTCGAGACGCTCCAGC 62.120 68.421 15.71 0.00 37.78 4.85
5640 10180 3.106552 CTCCTCGAGACGCTCCAG 58.893 66.667 15.71 0.00 0.00 3.86
5641 10181 3.134792 GCTCCTCGAGACGCTCCA 61.135 66.667 15.71 0.00 0.00 3.86
5642 10182 2.606155 CTTGCTCCTCGAGACGCTCC 62.606 65.000 15.71 0.00 0.00 4.70
5643 10183 1.226547 CTTGCTCCTCGAGACGCTC 60.227 63.158 15.71 0.00 0.00 5.03
5644 10184 1.675972 TCTTGCTCCTCGAGACGCT 60.676 57.895 15.71 0.00 30.24 5.07
5645 10185 1.515304 GTCTTGCTCCTCGAGACGC 60.515 63.158 15.71 15.90 44.03 5.19
5646 10186 4.775746 GTCTTGCTCCTCGAGACG 57.224 61.111 15.71 5.22 44.03 4.18
5648 10188 1.328279 TGTTGTCTTGCTCCTCGAGA 58.672 50.000 15.71 0.00 32.80 4.04
5649 10189 1.998315 CATGTTGTCTTGCTCCTCGAG 59.002 52.381 5.13 5.13 0.00 4.04
5650 10190 1.338105 CCATGTTGTCTTGCTCCTCGA 60.338 52.381 0.00 0.00 0.00 4.04
5651 10191 1.081892 CCATGTTGTCTTGCTCCTCG 58.918 55.000 0.00 0.00 0.00 4.63
5652 10192 2.354259 CTCCATGTTGTCTTGCTCCTC 58.646 52.381 0.00 0.00 0.00 3.71
5653 10193 1.004044 CCTCCATGTTGTCTTGCTCCT 59.996 52.381 0.00 0.00 0.00 3.69
5654 10194 1.003580 TCCTCCATGTTGTCTTGCTCC 59.996 52.381 0.00 0.00 0.00 4.70
5655 10195 2.079925 GTCCTCCATGTTGTCTTGCTC 58.920 52.381 0.00 0.00 0.00 4.26
5656 10196 1.609061 CGTCCTCCATGTTGTCTTGCT 60.609 52.381 0.00 0.00 0.00 3.91
5657 10197 0.798776 CGTCCTCCATGTTGTCTTGC 59.201 55.000 0.00 0.00 0.00 4.01
5658 10198 2.069273 GACGTCCTCCATGTTGTCTTG 58.931 52.381 3.51 0.00 0.00 3.02
5659 10199 1.336887 CGACGTCCTCCATGTTGTCTT 60.337 52.381 10.58 0.00 0.00 3.01
5714 10296 1.602311 CATGGGAGGTTAGCATGCTC 58.398 55.000 26.57 11.06 0.00 4.26
5716 10298 0.183492 TCCATGGGAGGTTAGCATGC 59.817 55.000 13.02 10.51 0.00 4.06
5831 10413 1.296715 CAGGTTCAGGAGGGGTTCG 59.703 63.158 0.00 0.00 0.00 3.95
5966 10555 1.503542 CAATGACTGTGGCCGAAGC 59.496 57.895 0.00 0.00 38.76 3.86
6072 10662 4.486125 AGTTCAAGCAACACCCAATTTT 57.514 36.364 0.00 0.00 37.48 1.82
6073 10663 4.486125 AAGTTCAAGCAACACCCAATTT 57.514 36.364 0.00 0.00 37.48 1.82
6098 10688 7.467623 ACCTATTACAGAAAACGTAGTAGTCG 58.532 38.462 0.00 0.00 45.00 4.18
6164 10759 4.280929 AGGAAAACCCACTGCTTGTATTTC 59.719 41.667 0.00 0.00 37.41 2.17
6165 10760 4.039124 CAGGAAAACCCACTGCTTGTATTT 59.961 41.667 0.00 0.00 37.41 1.40
6166 10761 3.573967 CAGGAAAACCCACTGCTTGTATT 59.426 43.478 0.00 0.00 37.41 1.89
6167 10762 3.157087 CAGGAAAACCCACTGCTTGTAT 58.843 45.455 0.00 0.00 37.41 2.29
6168 10763 2.582052 CAGGAAAACCCACTGCTTGTA 58.418 47.619 0.00 0.00 37.41 2.41
6226 10821 9.185192 CCTCGGCAAATTCTTATATGATTTTTC 57.815 33.333 6.00 3.04 0.00 2.29
6259 10854 5.621555 GCCGAAAGATTATACGAGGCATAGA 60.622 44.000 0.00 0.00 42.57 1.98
6260 10855 4.563184 GCCGAAAGATTATACGAGGCATAG 59.437 45.833 0.00 0.00 42.57 2.23
6262 10857 3.244078 TGCCGAAAGATTATACGAGGCAT 60.244 43.478 1.35 0.00 46.94 4.40
6269 10864 3.181458 TGGGGTCTGCCGAAAGATTATAC 60.181 47.826 0.00 0.00 34.97 1.47
6277 10872 2.852075 AGGTGGGGTCTGCCGAAA 60.852 61.111 0.00 0.00 34.97 3.46
6290 10885 1.197430 AGAAGCTCCTCCACCAGGTG 61.197 60.000 13.35 13.35 43.95 4.00
6291 10886 0.413832 TAGAAGCTCCTCCACCAGGT 59.586 55.000 0.00 0.00 43.95 4.00
6292 10887 1.118838 CTAGAAGCTCCTCCACCAGG 58.881 60.000 0.00 0.00 45.15 4.45
6293 10888 0.463620 GCTAGAAGCTCCTCCACCAG 59.536 60.000 0.00 0.00 38.45 4.00
6294 10889 0.252239 TGCTAGAAGCTCCTCCACCA 60.252 55.000 0.00 0.00 42.97 4.17
6295 10890 0.176910 GTGCTAGAAGCTCCTCCACC 59.823 60.000 0.00 0.00 42.97 4.61
6296 10891 1.134848 CAGTGCTAGAAGCTCCTCCAC 60.135 57.143 0.00 0.00 42.97 4.02
6297 10892 1.189752 CAGTGCTAGAAGCTCCTCCA 58.810 55.000 0.00 0.00 42.97 3.86
6298 10893 0.463620 CCAGTGCTAGAAGCTCCTCC 59.536 60.000 0.00 0.00 42.97 4.30
6299 10894 0.463620 CCCAGTGCTAGAAGCTCCTC 59.536 60.000 0.00 0.00 42.97 3.71
6300 10895 0.252467 ACCCAGTGCTAGAAGCTCCT 60.252 55.000 0.00 0.00 42.97 3.69
6303 10898 1.699634 TCAAACCCAGTGCTAGAAGCT 59.300 47.619 0.00 0.00 42.97 3.74
6359 10955 6.942976 AGTGAAATTCATGCATTCCAAAGAT 58.057 32.000 0.00 0.00 0.00 2.40
6404 11017 0.833287 GCTAATCAGGTCAGGCCTCA 59.167 55.000 0.00 0.00 46.96 3.86
6411 11024 6.483307 GCTTGTATAACATGCTAATCAGGTCA 59.517 38.462 9.84 0.00 43.42 4.02
6412 11025 6.892691 GCTTGTATAACATGCTAATCAGGTC 58.107 40.000 9.84 0.00 43.42 3.85
6413 11026 6.867662 GCTTGTATAACATGCTAATCAGGT 57.132 37.500 9.84 0.00 43.42 4.00
6422 11035 5.731686 GCTTTCCTGAGCTTGTATAACATGC 60.732 44.000 9.24 9.24 46.03 4.06
6482 11095 4.471386 AGCTCCATAGTGTCAGTATTTGGT 59.529 41.667 7.06 0.90 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.