Multiple sequence alignment - TraesCS1D01G219800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G219800 chr1D 100.000 5654 0 0 1 5654 307458896 307464549 0.000000e+00 10442.0
1 TraesCS1D01G219800 chr1D 95.699 186 7 1 5469 5654 248253315 248253499 1.190000e-76 298.0
2 TraesCS1D01G219800 chr1A 93.346 4839 178 62 667 5440 386719787 386724546 0.000000e+00 7020.0
3 TraesCS1D01G219800 chr1A 84.420 552 60 13 1 527 386719167 386719717 2.330000e-143 520.0
4 TraesCS1D01G219800 chr1A 77.753 454 76 18 32 463 554782904 554783354 7.270000e-64 255.0
5 TraesCS1D01G219800 chr1A 96.970 66 1 1 556 621 386719710 386719774 5.990000e-20 110.0
6 TraesCS1D01G219800 chr1B 94.409 4579 167 34 940 5471 416125763 416130299 0.000000e+00 6955.0
7 TraesCS1D01G219800 chr1B 85.451 543 61 12 1 527 416124890 416125430 2.980000e-152 549.0
8 TraesCS1D01G219800 chr1B 93.413 334 11 6 556 880 416125423 416125754 8.520000e-133 484.0
9 TraesCS1D01G219800 chr1B 80.000 95 17 1 207 301 489267149 489267241 1.020000e-07 69.4
10 TraesCS1D01G219800 chr6B 86.398 669 56 16 4782 5433 529654220 529654870 0.000000e+00 699.0
11 TraesCS1D01G219800 chr6B 77.465 142 27 4 32 170 621304521 621304382 4.700000e-11 80.5
12 TraesCS1D01G219800 chr7D 95.161 186 8 1 5469 5654 159649656 159649472 5.540000e-75 292.0
13 TraesCS1D01G219800 chr4D 94.595 185 8 2 5471 5654 57684442 57684625 9.270000e-73 285.0
14 TraesCS1D01G219800 chr4D 93.478 184 11 1 5471 5654 333266050 333265868 7.220000e-69 272.0
15 TraesCS1D01G219800 chr4D 89.785 186 14 4 5471 5654 196237364 196237182 3.410000e-57 233.0
16 TraesCS1D01G219800 chr6D 94.565 184 9 1 5471 5654 178666428 178666610 3.330000e-72 283.0
17 TraesCS1D01G219800 chr2B 93.548 186 11 1 5469 5654 758326699 758326515 5.580000e-70 276.0
18 TraesCS1D01G219800 chr4B 77.167 473 87 16 11 463 54641894 54641423 7.270000e-64 255.0
19 TraesCS1D01G219800 chr4A 78.125 416 68 15 58 453 685784053 685783641 5.660000e-60 243.0
20 TraesCS1D01G219800 chr3A 90.710 183 14 3 5473 5654 731227998 731227818 2.040000e-59 241.0
21 TraesCS1D01G219800 chr3A 89.189 185 16 4 5471 5654 108728475 108728294 1.580000e-55 228.0
22 TraesCS1D01G219800 chrUn 83.537 164 27 0 300 463 33277968 33277805 2.730000e-33 154.0
23 TraesCS1D01G219800 chrUn 83.537 164 27 0 300 463 400230566 400230729 2.730000e-33 154.0
24 TraesCS1D01G219800 chrUn 83.537 164 27 0 300 463 400280158 400279995 2.730000e-33 154.0
25 TraesCS1D01G219800 chr5A 82.759 174 29 1 291 463 699519340 699519513 2.730000e-33 154.0
26 TraesCS1D01G219800 chr5A 78.571 140 29 1 32 170 11544846 11544985 2.170000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G219800 chr1D 307458896 307464549 5653 False 10442.000000 10442 100.000000 1 5654 1 chr1D.!!$F2 5653
1 TraesCS1D01G219800 chr1A 386719167 386724546 5379 False 2550.000000 7020 91.578667 1 5440 3 chr1A.!!$F2 5439
2 TraesCS1D01G219800 chr1B 416124890 416130299 5409 False 2662.666667 6955 91.091000 1 5471 3 chr1B.!!$F2 5470
3 TraesCS1D01G219800 chr6B 529654220 529654870 650 False 699.000000 699 86.398000 4782 5433 1 chr6B.!!$F1 651

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 249 0.109039 GTTTGTGCCCGTGTGTTTGT 60.109 50.000 0.00 0.0 0.00 2.83 F
396 423 1.291877 GCGACGTGCCTTCAACTCAT 61.292 55.000 0.00 0.0 37.76 2.90 F
399 426 1.464997 GACGTGCCTTCAACTCATTCC 59.535 52.381 0.00 0.0 0.00 3.01 F
2331 2377 0.606401 ATTGGCTGTGCGCTACAAGT 60.606 50.000 9.73 0.0 39.20 3.16 F
2635 2681 0.749649 CTATTCAGCTCGGCTCCACT 59.250 55.000 0.00 0.0 36.40 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2042 2087 4.803426 CCAGGAGCTCCGACACGC 62.803 72.222 26.95 1.06 42.08 5.34 R
2288 2334 2.151202 GGCTTTGAAGTCCATGTCGAA 58.849 47.619 0.00 0.00 0.00 3.71 R
2482 2528 7.925043 TGTACTCAACAGTTAACCTGAAAAA 57.075 32.000 0.88 0.00 44.49 1.94 R
3470 3541 1.166531 AGTTGGGCTCGACAAACTGC 61.167 55.000 6.76 0.00 0.00 4.40 R
4669 4740 0.178970 AATGATGCTCTGATGGGGGC 60.179 55.000 0.00 0.00 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 1.203237 ACTGAGGAGGTGAGGTGATGT 60.203 52.381 0.00 0.00 0.00 3.06
96 98 3.815962 CCTGAAGATGGAATGATGCTCTG 59.184 47.826 0.00 0.00 0.00 3.35
118 120 3.006728 CCTAGCCCCGTCCCAACA 61.007 66.667 0.00 0.00 0.00 3.33
136 138 3.071786 ACAGTTCGTCTAGCATCATCG 57.928 47.619 0.00 0.00 0.00 3.84
151 153 0.248661 CATCGGAGAGCGTGTGTAGG 60.249 60.000 0.00 0.00 43.63 3.18
171 173 1.248101 TGTGTCTTCGGCGGATCTCA 61.248 55.000 7.21 0.00 0.00 3.27
223 225 1.270907 ACGCTTGGATCTGGTCTTCT 58.729 50.000 0.00 0.00 0.00 2.85
229 231 4.319177 CTTGGATCTGGTCTTCTTTCGTT 58.681 43.478 0.00 0.00 0.00 3.85
232 234 4.065789 GGATCTGGTCTTCTTTCGTTTGT 58.934 43.478 0.00 0.00 0.00 2.83
234 236 2.612212 TCTGGTCTTCTTTCGTTTGTGC 59.388 45.455 0.00 0.00 0.00 4.57
246 249 0.109039 GTTTGTGCCCGTGTGTTTGT 60.109 50.000 0.00 0.00 0.00 2.83
312 329 1.429930 TGTTCTGGGACCTTAGCACA 58.570 50.000 0.00 0.00 0.00 4.57
321 338 3.119955 GGGACCTTAGCACAACGATTTTC 60.120 47.826 0.00 0.00 0.00 2.29
326 343 1.588674 AGCACAACGATTTTCCGACA 58.411 45.000 0.00 0.00 0.00 4.35
342 359 4.392047 TCCGACAGTCTACTACAACAAGA 58.608 43.478 0.00 0.00 0.00 3.02
358 375 1.305930 AAGATTTGCCCGGCTTCGAC 61.306 55.000 11.61 0.00 35.61 4.20
368 395 2.754658 GCTTCGACGAGGGAGGGA 60.755 66.667 9.18 0.00 0.00 4.20
395 422 1.954146 GCGACGTGCCTTCAACTCA 60.954 57.895 0.00 0.00 37.76 3.41
396 423 1.291877 GCGACGTGCCTTCAACTCAT 61.292 55.000 0.00 0.00 37.76 2.90
399 426 1.464997 GACGTGCCTTCAACTCATTCC 59.535 52.381 0.00 0.00 0.00 3.01
414 441 6.663944 ACTCATTCCAGTAAATTTAGTCGC 57.336 37.500 2.40 0.00 0.00 5.19
453 481 7.396418 ACGGACCTGGATGTAATTTTTACTTA 58.604 34.615 0.00 0.00 0.00 2.24
523 551 5.105554 TGAAATGGGTAAATTTGTCATCCGG 60.106 40.000 0.00 0.00 29.89 5.14
524 552 2.729194 TGGGTAAATTTGTCATCCGGG 58.271 47.619 0.00 0.00 0.00 5.73
525 553 2.041891 TGGGTAAATTTGTCATCCGGGT 59.958 45.455 0.00 0.00 0.00 5.28
526 554 3.266254 TGGGTAAATTTGTCATCCGGGTA 59.734 43.478 0.00 0.00 0.00 3.69
527 555 4.079672 TGGGTAAATTTGTCATCCGGGTAT 60.080 41.667 0.00 0.00 0.00 2.73
528 556 5.132312 TGGGTAAATTTGTCATCCGGGTATA 59.868 40.000 0.00 0.00 0.00 1.47
529 557 5.704053 GGGTAAATTTGTCATCCGGGTATAG 59.296 44.000 0.00 0.00 0.00 1.31
530 558 6.293698 GGTAAATTTGTCATCCGGGTATAGT 58.706 40.000 0.00 0.00 0.00 2.12
531 559 7.444299 GGTAAATTTGTCATCCGGGTATAGTA 58.556 38.462 0.00 0.00 0.00 1.82
532 560 8.098912 GGTAAATTTGTCATCCGGGTATAGTAT 58.901 37.037 0.00 0.00 0.00 2.12
533 561 9.498176 GTAAATTTGTCATCCGGGTATAGTATT 57.502 33.333 0.00 0.00 0.00 1.89
534 562 8.990163 AAATTTGTCATCCGGGTATAGTATTT 57.010 30.769 0.00 0.00 0.00 1.40
535 563 8.990163 AATTTGTCATCCGGGTATAGTATTTT 57.010 30.769 0.00 0.00 0.00 1.82
536 564 8.990163 ATTTGTCATCCGGGTATAGTATTTTT 57.010 30.769 0.00 0.00 0.00 1.94
718 746 1.881324 CGGAAAAGAGGCCCGTTAAAA 59.119 47.619 0.00 0.00 38.55 1.52
720 748 3.610821 CGGAAAAGAGGCCCGTTAAAAAG 60.611 47.826 0.00 0.00 38.55 2.27
721 749 3.319972 GGAAAAGAGGCCCGTTAAAAAGT 59.680 43.478 0.00 0.00 0.00 2.66
727 764 5.001874 AGAGGCCCGTTAAAAAGTAAGAAG 58.998 41.667 0.00 0.00 0.00 2.85
729 766 5.379187 AGGCCCGTTAAAAAGTAAGAAGAA 58.621 37.500 0.00 0.00 0.00 2.52
757 794 6.838198 AAAAAGAGCAACGGAAATTAAACC 57.162 33.333 0.00 0.00 0.00 3.27
842 883 4.567385 CGCTGCTCGCTCTCCTCC 62.567 72.222 0.00 0.00 36.13 4.30
863 904 4.988716 ACGGACGGCAGAGTGGGA 62.989 66.667 0.00 0.00 0.00 4.37
865 906 2.997897 GGACGGCAGAGTGGGAGT 60.998 66.667 0.00 0.00 0.00 3.85
866 907 2.262915 GACGGCAGAGTGGGAGTG 59.737 66.667 0.00 0.00 0.00 3.51
868 909 4.087892 CGGCAGAGTGGGAGTGGG 62.088 72.222 0.00 0.00 0.00 4.61
888 929 1.630878 GGGAAGAGGAAGAAGAAGCCA 59.369 52.381 0.00 0.00 0.00 4.75
889 930 2.355615 GGGAAGAGGAAGAAGAAGCCAG 60.356 54.545 0.00 0.00 0.00 4.85
890 931 2.355197 GAAGAGGAAGAAGAAGCCAGC 58.645 52.381 0.00 0.00 0.00 4.85
916 958 2.999648 AGAGAGAAGCGGCAGCCA 61.000 61.111 13.30 0.00 46.67 4.75
933 975 1.680555 GCCAGAAGACGGAGAGAGAGA 60.681 57.143 0.00 0.00 0.00 3.10
937 979 3.104512 AGAAGACGGAGAGAGAGAGAGA 58.895 50.000 0.00 0.00 0.00 3.10
942 984 2.695666 ACGGAGAGAGAGAGAGAGAGAG 59.304 54.545 0.00 0.00 0.00 3.20
945 987 4.219115 GGAGAGAGAGAGAGAGAGAGAGA 58.781 52.174 0.00 0.00 0.00 3.10
1283 1325 3.745803 GTCCTCCGTCGCCTCGTT 61.746 66.667 0.00 0.00 0.00 3.85
1284 1326 2.987547 TCCTCCGTCGCCTCGTTT 60.988 61.111 0.00 0.00 0.00 3.60
1476 1521 2.602267 TCCTCGTTCCGGAAGCCA 60.602 61.111 19.50 3.09 0.00 4.75
2331 2377 0.606401 ATTGGCTGTGCGCTACAAGT 60.606 50.000 9.73 0.00 39.20 3.16
2474 2520 1.021390 CGAGGCCATTGGTGACTGTC 61.021 60.000 5.01 0.00 0.00 3.51
2482 2528 5.536161 GGCCATTGGTGACTGTCAATTATAT 59.464 40.000 12.81 0.00 31.95 0.86
2523 2569 7.320443 TGAGTACATTGCTCAAATTGGTATC 57.680 36.000 0.00 0.00 39.70 2.24
2635 2681 0.749649 CTATTCAGCTCGGCTCCACT 59.250 55.000 0.00 0.00 36.40 4.00
2641 2687 1.739562 GCTCGGCTCCACTTGTGAG 60.740 63.158 1.89 0.01 0.00 3.51
2657 2703 2.168936 TGTGAGTGACCCAACTACGTTT 59.831 45.455 0.00 0.00 0.00 3.60
2716 2762 6.840527 ACAAATTCCAAATTCTTCCACCAAT 58.159 32.000 0.00 0.00 0.00 3.16
2785 2831 4.103357 AGATGTGCGTCGTCTGTATTTAC 58.897 43.478 3.21 0.00 40.49 2.01
2960 3016 5.757850 AGATTTGAAGTTGGTGTCTTGAC 57.242 39.130 0.00 0.00 0.00 3.18
2963 3019 3.342377 TGAAGTTGGTGTCTTGACACA 57.658 42.857 27.96 15.55 42.07 3.72
2964 3020 3.680490 TGAAGTTGGTGTCTTGACACAA 58.320 40.909 27.96 18.83 42.07 3.33
2965 3021 4.269183 TGAAGTTGGTGTCTTGACACAAT 58.731 39.130 27.96 11.06 42.07 2.71
2966 3022 4.704540 TGAAGTTGGTGTCTTGACACAATT 59.295 37.500 27.96 17.34 42.07 2.32
2967 3023 5.184864 TGAAGTTGGTGTCTTGACACAATTT 59.815 36.000 27.96 21.80 42.07 1.82
3124 3185 1.896220 TTCAGCAAAGGCAGTAGTGG 58.104 50.000 0.00 0.00 44.61 4.00
3188 3249 6.156429 TCCTCCCTTCCTTTATACTCTGTTTC 59.844 42.308 0.00 0.00 0.00 2.78
3324 3385 0.918799 TTCCTAGGCTGGGGCATTGA 60.919 55.000 17.65 0.00 40.87 2.57
3415 3486 8.561536 TCCTTAGTTTGGGATAGAATGTGATA 57.438 34.615 0.00 0.00 0.00 2.15
3421 3492 7.557719 AGTTTGGGATAGAATGTGATACCTTTG 59.442 37.037 0.00 0.00 0.00 2.77
3495 3566 3.627395 TTGTCGAGCCCAACTATTCAT 57.373 42.857 0.00 0.00 0.00 2.57
3496 3567 3.627395 TGTCGAGCCCAACTATTCATT 57.373 42.857 0.00 0.00 0.00 2.57
3497 3568 3.531538 TGTCGAGCCCAACTATTCATTC 58.468 45.455 0.00 0.00 0.00 2.67
3499 3570 3.557595 GTCGAGCCCAACTATTCATTCAG 59.442 47.826 0.00 0.00 0.00 3.02
3500 3571 3.450817 TCGAGCCCAACTATTCATTCAGA 59.549 43.478 0.00 0.00 0.00 3.27
3501 3572 4.101585 TCGAGCCCAACTATTCATTCAGAT 59.898 41.667 0.00 0.00 0.00 2.90
3502 3573 5.304357 TCGAGCCCAACTATTCATTCAGATA 59.696 40.000 0.00 0.00 0.00 1.98
3503 3574 5.406780 CGAGCCCAACTATTCATTCAGATAC 59.593 44.000 0.00 0.00 0.00 2.24
3504 3575 6.506538 AGCCCAACTATTCATTCAGATACT 57.493 37.500 0.00 0.00 0.00 2.12
3783 3854 1.666872 GTCGTGTCCCTTGTTCCGG 60.667 63.158 0.00 0.00 0.00 5.14
3972 4043 1.848932 CGACGTCCGACCTTCACAGA 61.849 60.000 10.58 0.00 41.76 3.41
4116 4187 0.774276 TGGACAGCATTACCCCACAA 59.226 50.000 0.00 0.00 0.00 3.33
4182 4253 0.613260 ACGAGTGGAAGCAGGCATTA 59.387 50.000 0.00 0.00 0.00 1.90
4194 4265 0.983378 AGGCATTAGACCGGCTTCCT 60.983 55.000 0.00 2.56 33.63 3.36
4197 4268 1.202698 GCATTAGACCGGCTTCCTGAT 60.203 52.381 0.00 0.00 0.00 2.90
4227 4298 2.111384 TCGGAGGCTATCAAGAGCTTT 58.889 47.619 0.00 0.00 42.43 3.51
4287 4358 3.703556 AGGAGATGAAGATCAAGAAGCGA 59.296 43.478 0.00 0.00 0.00 4.93
4416 4487 3.864686 CGCGACGGCATTGAAGGG 61.865 66.667 0.00 0.00 39.92 3.95
4467 4538 0.378962 AGAAGAAGACCGAGATCGCG 59.621 55.000 12.28 12.28 38.18 5.87
4587 4658 2.659428 GGAATGTTCCAAGCCATAGCT 58.341 47.619 6.91 0.00 46.76 3.32
4662 4733 1.521681 GGTGCGGTAGGATGTCAGC 60.522 63.158 0.00 0.00 0.00 4.26
4663 4734 1.521681 GTGCGGTAGGATGTCAGCC 60.522 63.158 0.00 0.00 0.00 4.85
4664 4735 1.987306 TGCGGTAGGATGTCAGCCA 60.987 57.895 10.34 0.00 0.00 4.75
4665 4736 1.521681 GCGGTAGGATGTCAGCCAC 60.522 63.158 10.34 5.60 0.00 5.01
4666 4737 1.961180 GCGGTAGGATGTCAGCCACT 61.961 60.000 10.34 0.00 0.00 4.00
4667 4738 0.103208 CGGTAGGATGTCAGCCACTC 59.897 60.000 10.34 0.00 0.00 3.51
4668 4739 1.195115 GGTAGGATGTCAGCCACTCA 58.805 55.000 10.34 0.00 0.00 3.41
4669 4740 1.137872 GGTAGGATGTCAGCCACTCAG 59.862 57.143 10.34 0.00 0.00 3.35
4670 4741 0.826715 TAGGATGTCAGCCACTCAGC 59.173 55.000 10.34 0.00 0.00 4.26
4681 4752 1.525923 CACTCAGCCCCCATCAGAG 59.474 63.158 0.00 0.00 0.00 3.35
4693 4764 2.223971 CCCATCAGAGCATCATTTTGGC 60.224 50.000 0.00 0.00 37.82 4.52
4694 4765 2.429250 CCATCAGAGCATCATTTTGGCA 59.571 45.455 0.00 0.00 37.82 4.92
4696 4767 4.299155 CATCAGAGCATCATTTTGGCATC 58.701 43.478 0.00 0.00 37.82 3.91
4697 4768 2.691526 TCAGAGCATCATTTTGGCATCC 59.308 45.455 0.00 0.00 37.82 3.51
4703 4774 3.293337 CATCATTTTGGCATCCCTCTCA 58.707 45.455 0.00 0.00 0.00 3.27
4715 4792 0.478507 CCCTCTCACTTTGGGTGGTT 59.521 55.000 0.00 0.00 45.38 3.67
4716 4793 1.545651 CCCTCTCACTTTGGGTGGTTC 60.546 57.143 0.00 0.00 45.38 3.62
4718 4795 0.107831 TCTCACTTTGGGTGGTTCGG 59.892 55.000 0.00 0.00 45.38 4.30
4720 4797 1.071071 CTCACTTTGGGTGGTTCGGTA 59.929 52.381 0.00 0.00 45.38 4.02
4732 4809 5.954150 GGGTGGTTCGGTAATCTATATAGGA 59.046 44.000 9.89 0.00 0.00 2.94
4790 4883 0.621609 TTAGGGATGAAACGTGGGGG 59.378 55.000 0.00 0.00 0.00 5.40
4887 4988 0.532573 TCGCCGCTCATCTTCTTTCT 59.467 50.000 0.00 0.00 0.00 2.52
4994 5096 0.034896 TTGGTCTTCCCTCTCGCAAC 59.965 55.000 0.00 0.00 0.00 4.17
4995 5097 0.832135 TGGTCTTCCCTCTCGCAACT 60.832 55.000 0.00 0.00 0.00 3.16
4996 5098 0.321996 GGTCTTCCCTCTCGCAACTT 59.678 55.000 0.00 0.00 0.00 2.66
4997 5099 1.433534 GTCTTCCCTCTCGCAACTTG 58.566 55.000 0.00 0.00 0.00 3.16
4998 5100 1.000955 GTCTTCCCTCTCGCAACTTGA 59.999 52.381 0.00 0.00 0.00 3.02
4999 5101 1.691976 TCTTCCCTCTCGCAACTTGAA 59.308 47.619 0.00 0.00 0.00 2.69
5000 5102 2.104111 TCTTCCCTCTCGCAACTTGAAA 59.896 45.455 0.00 0.00 0.00 2.69
5001 5103 2.859165 TCCCTCTCGCAACTTGAAAT 57.141 45.000 0.00 0.00 0.00 2.17
5002 5104 2.699954 TCCCTCTCGCAACTTGAAATC 58.300 47.619 0.00 0.00 0.00 2.17
5014 5116 6.640499 CGCAACTTGAAATCCAACTTGAAATA 59.360 34.615 0.00 0.00 33.29 1.40
5032 5134 9.702494 CTTGAAATATATGCTCATGTCTGTAGA 57.298 33.333 0.00 0.00 0.00 2.59
5077 5220 1.133792 AGTGGTTCAGAGTTGTTGGGG 60.134 52.381 0.00 0.00 0.00 4.96
5078 5221 1.133915 GTGGTTCAGAGTTGTTGGGGA 60.134 52.381 0.00 0.00 0.00 4.81
5082 5225 3.551846 GTTCAGAGTTGTTGGGGAGAAA 58.448 45.455 0.00 0.00 0.00 2.52
5084 5227 2.106511 TCAGAGTTGTTGGGGAGAAAGG 59.893 50.000 0.00 0.00 0.00 3.11
5085 5228 2.106511 CAGAGTTGTTGGGGAGAAAGGA 59.893 50.000 0.00 0.00 0.00 3.36
5087 5230 3.399305 AGAGTTGTTGGGGAGAAAGGATT 59.601 43.478 0.00 0.00 0.00 3.01
5088 5231 3.759086 GAGTTGTTGGGGAGAAAGGATTC 59.241 47.826 0.00 0.00 35.70 2.52
5103 5246 1.564348 GGATTCCCCAAGCCTGAAGTA 59.436 52.381 0.00 0.00 34.94 2.24
5296 5448 0.827925 ACCGACAAGTCCTCTGCTGA 60.828 55.000 0.00 0.00 0.00 4.26
5297 5449 0.108898 CCGACAAGTCCTCTGCTGAG 60.109 60.000 13.35 13.35 39.92 3.35
5308 5460 0.108945 TCTGCTGAGACATGTGCTCG 60.109 55.000 1.15 7.69 35.15 5.03
5309 5461 0.108945 CTGCTGAGACATGTGCTCGA 60.109 55.000 1.15 1.12 35.15 4.04
5311 5463 1.409227 GCTGAGACATGTGCTCGACG 61.409 60.000 1.15 4.33 35.15 5.12
5313 5465 0.109735 TGAGACATGTGCTCGACGTC 60.110 55.000 1.15 5.18 35.15 4.34
5315 5467 1.213013 GACATGTGCTCGACGTCCT 59.787 57.895 10.58 0.00 0.00 3.85
5353 5514 5.906113 GGATACTGTCTCTTGACTTCTGA 57.094 43.478 0.00 0.00 43.29 3.27
5400 5561 0.877213 ACCGTTTGGAGTTTCCGACG 60.877 55.000 13.53 13.53 43.64 5.12
5412 5573 2.712057 TTCCGACGACAGGAACTAAC 57.288 50.000 0.00 0.00 42.33 2.34
5471 5632 6.569994 CGTTCCAAGCTTGTACTCTAGTAGTT 60.570 42.308 24.35 0.00 39.80 2.24
5472 5633 6.512342 TCCAAGCTTGTACTCTAGTAGTTC 57.488 41.667 24.35 0.00 39.80 3.01
5473 5634 6.008331 TCCAAGCTTGTACTCTAGTAGTTCA 58.992 40.000 24.35 0.46 39.80 3.18
5474 5635 6.072064 TCCAAGCTTGTACTCTAGTAGTTCAC 60.072 42.308 24.35 0.00 39.80 3.18
5475 5636 6.294564 CCAAGCTTGTACTCTAGTAGTTCACA 60.295 42.308 24.35 0.00 39.80 3.58
5476 5637 6.896021 AGCTTGTACTCTAGTAGTTCACAA 57.104 37.500 0.00 5.34 39.80 3.33
5479 5640 6.644248 TTGTACTCTAGTAGTTCACAAGCA 57.356 37.500 0.00 0.00 39.80 3.91
5480 5641 6.644248 TGTACTCTAGTAGTTCACAAGCAA 57.356 37.500 0.00 0.00 39.80 3.91
5481 5642 7.046292 TGTACTCTAGTAGTTCACAAGCAAA 57.954 36.000 0.00 0.00 39.80 3.68
5482 5643 6.921857 TGTACTCTAGTAGTTCACAAGCAAAC 59.078 38.462 0.00 0.00 39.80 2.93
5483 5644 6.163135 ACTCTAGTAGTTCACAAGCAAACT 57.837 37.500 0.00 0.00 39.07 2.66
5484 5645 6.217294 ACTCTAGTAGTTCACAAGCAAACTC 58.783 40.000 0.00 0.00 37.02 3.01
5485 5646 5.220381 TCTAGTAGTTCACAAGCAAACTCG 58.780 41.667 0.00 0.00 37.02 4.18
5486 5647 3.131396 AGTAGTTCACAAGCAAACTCGG 58.869 45.455 0.00 0.00 37.02 4.63
5487 5648 2.325583 AGTTCACAAGCAAACTCGGA 57.674 45.000 0.00 0.00 29.89 4.55
5488 5649 2.639065 AGTTCACAAGCAAACTCGGAA 58.361 42.857 0.00 0.00 29.89 4.30
5489 5650 3.013921 AGTTCACAAGCAAACTCGGAAA 58.986 40.909 0.00 0.00 29.89 3.13
5490 5651 3.065371 AGTTCACAAGCAAACTCGGAAAG 59.935 43.478 0.00 0.00 29.89 2.62
5491 5652 1.946768 TCACAAGCAAACTCGGAAAGG 59.053 47.619 0.00 0.00 0.00 3.11
5492 5653 1.001378 CACAAGCAAACTCGGAAAGGG 60.001 52.381 0.00 0.00 0.00 3.95
5493 5654 1.318576 CAAGCAAACTCGGAAAGGGT 58.681 50.000 0.00 0.00 32.66 4.34
5495 5656 1.605753 AGCAAACTCGGAAAGGGTTC 58.394 50.000 0.00 0.00 44.17 3.62
5496 5657 0.237498 GCAAACTCGGAAAGGGTTCG 59.763 55.000 0.00 0.00 44.17 3.95
5497 5658 1.873698 CAAACTCGGAAAGGGTTCGA 58.126 50.000 0.00 0.00 44.17 3.71
5498 5659 1.529865 CAAACTCGGAAAGGGTTCGAC 59.470 52.381 0.00 0.00 44.17 4.20
5499 5660 0.754472 AACTCGGAAAGGGTTCGACA 59.246 50.000 0.00 0.00 40.01 4.35
5500 5661 0.033090 ACTCGGAAAGGGTTCGACAC 59.967 55.000 0.00 0.00 34.28 3.67
5501 5662 0.032952 CTCGGAAAGGGTTCGACACA 59.967 55.000 0.00 0.00 34.28 3.72
5502 5663 0.682852 TCGGAAAGGGTTCGACACAT 59.317 50.000 0.00 0.00 34.28 3.21
5503 5664 1.071071 TCGGAAAGGGTTCGACACATT 59.929 47.619 0.00 0.00 34.28 2.71
5504 5665 1.463444 CGGAAAGGGTTCGACACATTC 59.537 52.381 0.00 0.00 34.28 2.67
5505 5666 2.500229 GGAAAGGGTTCGACACATTCA 58.500 47.619 7.27 0.00 34.28 2.57
5506 5667 3.081804 GGAAAGGGTTCGACACATTCAT 58.918 45.455 7.27 0.00 34.28 2.57
5507 5668 3.119849 GGAAAGGGTTCGACACATTCATG 60.120 47.826 7.27 0.00 34.28 3.07
5508 5669 3.417069 AAGGGTTCGACACATTCATGA 57.583 42.857 0.00 0.00 0.00 3.07
5509 5670 3.634397 AGGGTTCGACACATTCATGAT 57.366 42.857 0.00 0.00 0.00 2.45
5510 5671 3.273434 AGGGTTCGACACATTCATGATG 58.727 45.455 0.00 0.00 41.71 3.07
5511 5672 2.223340 GGGTTCGACACATTCATGATGC 60.223 50.000 0.00 0.00 39.47 3.91
5512 5673 2.679837 GGTTCGACACATTCATGATGCT 59.320 45.455 0.00 0.00 39.47 3.79
5513 5674 3.871006 GGTTCGACACATTCATGATGCTA 59.129 43.478 0.00 0.00 39.47 3.49
5514 5675 4.332543 GGTTCGACACATTCATGATGCTAA 59.667 41.667 0.00 0.00 39.47 3.09
5515 5676 5.008019 GGTTCGACACATTCATGATGCTAAT 59.992 40.000 0.00 0.00 39.47 1.73
5516 5677 5.912360 TCGACACATTCATGATGCTAATC 57.088 39.130 0.00 0.00 39.47 1.75
5517 5678 5.604565 TCGACACATTCATGATGCTAATCT 58.395 37.500 0.00 0.00 39.47 2.40
5518 5679 5.464389 TCGACACATTCATGATGCTAATCTG 59.536 40.000 0.00 0.00 39.47 2.90
5519 5680 5.235831 CGACACATTCATGATGCTAATCTGT 59.764 40.000 0.00 0.00 39.47 3.41
5520 5681 6.238293 CGACACATTCATGATGCTAATCTGTT 60.238 38.462 0.00 0.00 39.47 3.16
5521 5682 6.792326 ACACATTCATGATGCTAATCTGTTG 58.208 36.000 0.00 0.00 39.47 3.33
5522 5683 6.183360 ACACATTCATGATGCTAATCTGTTGG 60.183 38.462 0.00 0.00 39.47 3.77
5523 5684 6.038936 CACATTCATGATGCTAATCTGTTGGA 59.961 38.462 0.00 0.00 39.47 3.53
5524 5685 6.039047 ACATTCATGATGCTAATCTGTTGGAC 59.961 38.462 0.00 0.00 39.47 4.02
5525 5686 5.363562 TCATGATGCTAATCTGTTGGACT 57.636 39.130 0.00 0.00 33.61 3.85
5526 5687 5.363101 TCATGATGCTAATCTGTTGGACTC 58.637 41.667 0.00 0.00 33.61 3.36
5527 5688 5.129980 TCATGATGCTAATCTGTTGGACTCT 59.870 40.000 0.00 0.00 33.61 3.24
5528 5689 5.426689 TGATGCTAATCTGTTGGACTCTT 57.573 39.130 0.00 0.00 33.61 2.85
5529 5690 5.809001 TGATGCTAATCTGTTGGACTCTTT 58.191 37.500 0.00 0.00 33.61 2.52
5530 5691 5.645067 TGATGCTAATCTGTTGGACTCTTTG 59.355 40.000 0.00 0.00 33.61 2.77
5531 5692 4.326826 TGCTAATCTGTTGGACTCTTTGG 58.673 43.478 0.00 0.00 0.00 3.28
5532 5693 4.041567 TGCTAATCTGTTGGACTCTTTGGA 59.958 41.667 0.00 0.00 0.00 3.53
5533 5694 5.003804 GCTAATCTGTTGGACTCTTTGGAA 58.996 41.667 0.00 0.00 0.00 3.53
5534 5695 5.473504 GCTAATCTGTTGGACTCTTTGGAAA 59.526 40.000 0.00 0.00 0.00 3.13
5535 5696 5.774498 AATCTGTTGGACTCTTTGGAAAC 57.226 39.130 0.00 0.00 0.00 2.78
5536 5697 4.229304 TCTGTTGGACTCTTTGGAAACA 57.771 40.909 0.00 0.00 39.83 2.83
5550 5711 3.230134 TGGAAACAAAGGAACATGAGGG 58.770 45.455 0.00 0.00 37.44 4.30
5551 5712 3.230976 GGAAACAAAGGAACATGAGGGT 58.769 45.455 0.00 0.00 0.00 4.34
5552 5713 3.255888 GGAAACAAAGGAACATGAGGGTC 59.744 47.826 0.00 0.00 0.00 4.46
5553 5714 3.884037 AACAAAGGAACATGAGGGTCT 57.116 42.857 0.00 0.00 0.00 3.85
5554 5715 3.884037 ACAAAGGAACATGAGGGTCTT 57.116 42.857 0.00 0.00 0.00 3.01
5555 5716 3.756117 ACAAAGGAACATGAGGGTCTTC 58.244 45.455 0.00 0.00 0.00 2.87
5556 5717 2.744202 CAAAGGAACATGAGGGTCTTCG 59.256 50.000 0.00 0.00 0.00 3.79
5557 5718 0.905357 AGGAACATGAGGGTCTTCGG 59.095 55.000 0.00 0.00 0.00 4.30
5558 5719 0.744771 GGAACATGAGGGTCTTCGGC 60.745 60.000 0.00 0.00 0.00 5.54
5559 5720 0.250513 GAACATGAGGGTCTTCGGCT 59.749 55.000 0.00 0.00 0.00 5.52
5560 5721 0.250513 AACATGAGGGTCTTCGGCTC 59.749 55.000 0.00 0.00 0.00 4.70
5561 5722 0.904865 ACATGAGGGTCTTCGGCTCA 60.905 55.000 0.00 0.00 0.00 4.26
5562 5723 0.179089 CATGAGGGTCTTCGGCTCAG 60.179 60.000 0.00 0.00 0.00 3.35
5563 5724 1.333636 ATGAGGGTCTTCGGCTCAGG 61.334 60.000 0.00 0.00 0.00 3.86
5564 5725 1.985116 GAGGGTCTTCGGCTCAGGT 60.985 63.158 0.00 0.00 0.00 4.00
5565 5726 1.950973 GAGGGTCTTCGGCTCAGGTC 61.951 65.000 0.00 0.00 0.00 3.85
5566 5727 2.283529 GGGTCTTCGGCTCAGGTCA 61.284 63.158 0.00 0.00 0.00 4.02
5567 5728 1.671742 GGTCTTCGGCTCAGGTCAA 59.328 57.895 0.00 0.00 0.00 3.18
5568 5729 0.390472 GGTCTTCGGCTCAGGTCAAG 60.390 60.000 0.00 0.00 0.00 3.02
5569 5730 0.318762 GTCTTCGGCTCAGGTCAAGT 59.681 55.000 0.00 0.00 0.00 3.16
5570 5731 0.603569 TCTTCGGCTCAGGTCAAGTC 59.396 55.000 0.00 0.00 0.00 3.01
5571 5732 0.318441 CTTCGGCTCAGGTCAAGTCA 59.682 55.000 0.00 0.00 0.00 3.41
5572 5733 0.756294 TTCGGCTCAGGTCAAGTCAA 59.244 50.000 0.00 0.00 0.00 3.18
5573 5734 0.318441 TCGGCTCAGGTCAAGTCAAG 59.682 55.000 0.00 0.00 0.00 3.02
5574 5735 0.318441 CGGCTCAGGTCAAGTCAAGA 59.682 55.000 0.00 0.00 0.00 3.02
5575 5736 1.270305 CGGCTCAGGTCAAGTCAAGAA 60.270 52.381 0.00 0.00 0.00 2.52
5576 5737 2.613977 CGGCTCAGGTCAAGTCAAGAAT 60.614 50.000 0.00 0.00 0.00 2.40
5577 5738 3.368427 CGGCTCAGGTCAAGTCAAGAATA 60.368 47.826 0.00 0.00 0.00 1.75
5578 5739 4.579869 GGCTCAGGTCAAGTCAAGAATAA 58.420 43.478 0.00 0.00 0.00 1.40
5579 5740 4.633565 GGCTCAGGTCAAGTCAAGAATAAG 59.366 45.833 0.00 0.00 0.00 1.73
5580 5741 4.633565 GCTCAGGTCAAGTCAAGAATAAGG 59.366 45.833 0.00 0.00 0.00 2.69
5581 5742 5.165961 TCAGGTCAAGTCAAGAATAAGGG 57.834 43.478 0.00 0.00 0.00 3.95
5582 5743 4.597507 TCAGGTCAAGTCAAGAATAAGGGT 59.402 41.667 0.00 0.00 0.00 4.34
5583 5744 4.697352 CAGGTCAAGTCAAGAATAAGGGTG 59.303 45.833 0.00 0.00 0.00 4.61
5584 5745 4.597507 AGGTCAAGTCAAGAATAAGGGTGA 59.402 41.667 0.00 0.00 0.00 4.02
5585 5746 4.695928 GGTCAAGTCAAGAATAAGGGTGAC 59.304 45.833 0.00 0.00 40.56 3.67
5586 5747 5.305585 GTCAAGTCAAGAATAAGGGTGACA 58.694 41.667 5.54 0.00 42.29 3.58
5587 5748 5.179555 GTCAAGTCAAGAATAAGGGTGACAC 59.820 44.000 0.00 0.00 42.29 3.67
5588 5749 3.926616 AGTCAAGAATAAGGGTGACACG 58.073 45.455 0.00 0.00 42.29 4.49
5589 5750 3.000727 GTCAAGAATAAGGGTGACACGG 58.999 50.000 0.00 0.00 40.10 4.94
5590 5751 2.635915 TCAAGAATAAGGGTGACACGGT 59.364 45.455 0.00 0.00 0.00 4.83
5591 5752 2.742053 CAAGAATAAGGGTGACACGGTG 59.258 50.000 6.58 6.58 0.00 4.94
5592 5753 1.278127 AGAATAAGGGTGACACGGTGG 59.722 52.381 13.48 0.00 0.00 4.61
5593 5754 1.276989 GAATAAGGGTGACACGGTGGA 59.723 52.381 13.48 0.00 0.00 4.02
5594 5755 0.611714 ATAAGGGTGACACGGTGGAC 59.388 55.000 13.48 8.41 0.00 4.02
5595 5756 0.759812 TAAGGGTGACACGGTGGACA 60.760 55.000 13.48 9.39 0.00 4.02
5596 5757 1.415672 AAGGGTGACACGGTGGACAT 61.416 55.000 13.48 0.00 0.00 3.06
5597 5758 1.671054 GGGTGACACGGTGGACATG 60.671 63.158 13.48 0.00 0.00 3.21
5598 5759 1.369692 GGTGACACGGTGGACATGA 59.630 57.895 13.48 0.00 0.00 3.07
5599 5760 0.036388 GGTGACACGGTGGACATGAT 60.036 55.000 13.48 0.00 0.00 2.45
5600 5761 1.359848 GTGACACGGTGGACATGATC 58.640 55.000 13.48 0.00 0.00 2.92
5601 5762 1.066858 GTGACACGGTGGACATGATCT 60.067 52.381 13.48 0.00 0.00 2.75
5602 5763 1.623311 TGACACGGTGGACATGATCTT 59.377 47.619 13.48 0.00 0.00 2.40
5603 5764 2.271800 GACACGGTGGACATGATCTTC 58.728 52.381 13.48 0.00 0.00 2.87
5604 5765 1.280982 CACGGTGGACATGATCTTCG 58.719 55.000 0.00 0.19 0.00 3.79
5605 5766 1.135112 CACGGTGGACATGATCTTCGA 60.135 52.381 0.00 0.00 0.00 3.71
5606 5767 1.135083 ACGGTGGACATGATCTTCGAC 60.135 52.381 0.00 0.00 0.00 4.20
5607 5768 1.560923 GGTGGACATGATCTTCGACG 58.439 55.000 0.00 0.00 0.00 5.12
5608 5769 1.134367 GGTGGACATGATCTTCGACGA 59.866 52.381 0.00 0.00 0.00 4.20
5609 5770 2.186076 GTGGACATGATCTTCGACGAC 58.814 52.381 0.00 0.00 0.00 4.34
5610 5771 2.092323 TGGACATGATCTTCGACGACT 58.908 47.619 0.00 0.00 0.00 4.18
5611 5772 2.492088 TGGACATGATCTTCGACGACTT 59.508 45.455 0.00 0.00 0.00 3.01
5612 5773 2.854777 GGACATGATCTTCGACGACTTG 59.145 50.000 0.00 0.00 0.00 3.16
5613 5774 3.427638 GGACATGATCTTCGACGACTTGA 60.428 47.826 0.00 0.00 0.00 3.02
5614 5775 3.763902 ACATGATCTTCGACGACTTGAG 58.236 45.455 0.00 0.00 0.00 3.02
5615 5776 2.921634 TGATCTTCGACGACTTGAGG 57.078 50.000 0.00 0.00 0.00 3.86
5616 5777 2.433436 TGATCTTCGACGACTTGAGGA 58.567 47.619 0.00 0.00 0.00 3.71
5617 5778 2.161808 TGATCTTCGACGACTTGAGGAC 59.838 50.000 0.00 0.00 0.00 3.85
5618 5779 1.893544 TCTTCGACGACTTGAGGACT 58.106 50.000 0.00 0.00 0.00 3.85
5619 5780 2.228059 TCTTCGACGACTTGAGGACTT 58.772 47.619 0.00 0.00 0.00 3.01
5620 5781 2.031069 TCTTCGACGACTTGAGGACTTG 60.031 50.000 0.00 0.00 0.00 3.16
5621 5782 0.596577 TCGACGACTTGAGGACTTGG 59.403 55.000 0.00 0.00 0.00 3.61
5622 5783 0.388649 CGACGACTTGAGGACTTGGG 60.389 60.000 0.00 0.00 0.00 4.12
5623 5784 0.037232 GACGACTTGAGGACTTGGGG 60.037 60.000 0.00 0.00 0.00 4.96
5624 5785 1.376037 CGACTTGAGGACTTGGGGC 60.376 63.158 0.00 0.00 0.00 5.80
5625 5786 1.002011 GACTTGAGGACTTGGGGCC 60.002 63.158 0.00 0.00 0.00 5.80
5626 5787 1.774217 ACTTGAGGACTTGGGGCCA 60.774 57.895 4.39 0.00 0.00 5.36
5627 5788 1.303643 CTTGAGGACTTGGGGCCAC 60.304 63.158 4.39 0.00 0.00 5.01
5628 5789 3.190738 TTGAGGACTTGGGGCCACG 62.191 63.158 4.39 0.00 0.00 4.94
5629 5790 4.410400 GAGGACTTGGGGCCACGG 62.410 72.222 4.39 0.00 0.00 4.94
5641 5802 3.726517 CCACGGCAGGAGCGTTTG 61.727 66.667 0.00 0.00 43.41 2.93
5642 5803 3.726517 CACGGCAGGAGCGTTTGG 61.727 66.667 0.00 0.00 43.41 3.28
5643 5804 3.936203 ACGGCAGGAGCGTTTGGA 61.936 61.111 0.00 0.00 43.41 3.53
5644 5805 3.121030 CGGCAGGAGCGTTTGGAG 61.121 66.667 0.00 0.00 43.41 3.86
5645 5806 2.747855 GGCAGGAGCGTTTGGAGG 60.748 66.667 0.00 0.00 43.41 4.30
5646 5807 2.347490 GCAGGAGCGTTTGGAGGA 59.653 61.111 0.00 0.00 0.00 3.71
5647 5808 2.035442 GCAGGAGCGTTTGGAGGAC 61.035 63.158 0.00 0.00 0.00 3.85
5648 5809 1.371183 CAGGAGCGTTTGGAGGACA 59.629 57.895 0.00 0.00 0.00 4.02
5649 5810 0.250295 CAGGAGCGTTTGGAGGACAA 60.250 55.000 0.00 0.00 37.28 3.18
5650 5811 0.250338 AGGAGCGTTTGGAGGACAAC 60.250 55.000 0.00 0.00 39.19 3.32
5651 5812 0.250338 GGAGCGTTTGGAGGACAACT 60.250 55.000 0.00 0.00 39.19 3.16
5652 5813 1.001633 GGAGCGTTTGGAGGACAACTA 59.998 52.381 0.00 0.00 39.19 2.24
5653 5814 2.338500 GAGCGTTTGGAGGACAACTAG 58.662 52.381 0.00 0.00 39.19 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 1.275666 TTCCATCTTCAGGAAGCCGA 58.724 50.000 4.15 0.00 40.11 5.54
115 117 3.439293 CGATGATGCTAGACGAACTGTT 58.561 45.455 0.00 0.00 0.00 3.16
118 120 2.292016 CTCCGATGATGCTAGACGAACT 59.708 50.000 0.00 0.00 0.00 3.01
136 138 0.388649 CACACCTACACACGCTCTCC 60.389 60.000 0.00 0.00 0.00 3.71
151 153 0.802607 GAGATCCGCCGAAGACACAC 60.803 60.000 0.00 0.00 0.00 3.82
171 173 5.930135 AGATAAACGCCAACCTAATCTCAT 58.070 37.500 0.00 0.00 0.00 2.90
179 181 2.754946 TCGAAGATAAACGCCAACCT 57.245 45.000 0.00 0.00 0.00 3.50
223 225 1.306642 ACACACGGGCACAAACGAAA 61.307 50.000 0.00 0.00 0.00 3.46
229 231 1.018148 CTACAAACACACGGGCACAA 58.982 50.000 0.00 0.00 0.00 3.33
232 234 0.107116 AACCTACAAACACACGGGCA 60.107 50.000 0.00 0.00 0.00 5.36
234 236 0.948678 CCAACCTACAAACACACGGG 59.051 55.000 0.00 0.00 0.00 5.28
272 276 1.002087 ACAACCTCCACCGATGAAGAC 59.998 52.381 0.00 0.00 0.00 3.01
312 329 4.516365 AGTAGACTGTCGGAAAATCGTT 57.484 40.909 1.52 0.00 0.00 3.85
321 338 4.761235 TCTTGTTGTAGTAGACTGTCGG 57.239 45.455 1.52 0.00 0.00 4.79
326 343 5.246307 GGGCAAATCTTGTTGTAGTAGACT 58.754 41.667 0.00 0.00 0.00 3.24
342 359 3.124921 CGTCGAAGCCGGGCAAAT 61.125 61.111 23.09 6.75 36.24 2.32
358 375 2.835705 CGTCATCGTCCCTCCCTCG 61.836 68.421 0.00 0.00 0.00 4.63
395 422 3.311596 GCGGCGACTAAATTTACTGGAAT 59.688 43.478 12.98 0.00 0.00 3.01
396 423 2.674357 GCGGCGACTAAATTTACTGGAA 59.326 45.455 12.98 0.00 0.00 3.53
399 426 3.489785 CCTAGCGGCGACTAAATTTACTG 59.510 47.826 12.98 0.00 0.00 2.74
414 441 0.592148 GTCCGTAGATCACCTAGCGG 59.408 60.000 0.00 0.00 40.32 5.52
424 451 5.888982 AAATTACATCCAGGTCCGTAGAT 57.111 39.130 0.00 0.00 0.00 1.98
453 481 8.324191 TCTTTCCAGAATATAGAGAACACCAT 57.676 34.615 0.00 0.00 0.00 3.55
546 574 2.929477 TACCACGGACCCAACCCC 60.929 66.667 0.00 0.00 0.00 4.95
547 575 2.348620 GTACCACGGACCCAACCC 59.651 66.667 0.00 0.00 0.00 4.11
548 576 1.004200 CTGTACCACGGACCCAACC 60.004 63.158 0.00 0.00 0.00 3.77
549 577 0.393820 TTCTGTACCACGGACCCAAC 59.606 55.000 0.00 0.00 32.30 3.77
550 578 1.129917 TTTCTGTACCACGGACCCAA 58.870 50.000 0.00 0.00 32.30 4.12
551 579 1.002659 CATTTCTGTACCACGGACCCA 59.997 52.381 0.00 0.00 32.30 4.51
552 580 1.276989 TCATTTCTGTACCACGGACCC 59.723 52.381 0.00 0.00 32.30 4.46
553 581 2.289195 TGTCATTTCTGTACCACGGACC 60.289 50.000 0.00 0.00 32.30 4.46
554 582 3.034721 TGTCATTTCTGTACCACGGAC 57.965 47.619 0.00 0.00 32.30 4.79
555 583 3.595173 CATGTCATTTCTGTACCACGGA 58.405 45.455 0.00 0.00 0.00 4.69
556 584 2.677836 CCATGTCATTTCTGTACCACGG 59.322 50.000 0.00 0.00 0.00 4.94
557 585 3.595173 TCCATGTCATTTCTGTACCACG 58.405 45.455 0.00 0.00 0.00 4.94
558 586 5.957842 TTTCCATGTCATTTCTGTACCAC 57.042 39.130 0.00 0.00 0.00 4.16
559 587 7.537596 AAATTTCCATGTCATTTCTGTACCA 57.462 32.000 0.00 0.00 0.00 3.25
721 749 9.458374 CCGTTGCTCTTTTTATTTTTCTTCTTA 57.542 29.630 0.00 0.00 0.00 2.10
788 829 1.539124 GGGGAGAGTGAGGTGGGTT 60.539 63.158 0.00 0.00 0.00 4.11
842 883 3.374402 ACTCTGCCGTCCGTCAGG 61.374 66.667 0.00 0.00 39.46 3.86
863 904 1.152271 TCTTCTTCCTCTTCCCCCACT 59.848 52.381 0.00 0.00 0.00 4.00
865 906 2.269940 CTTCTTCTTCCTCTTCCCCCA 58.730 52.381 0.00 0.00 0.00 4.96
866 907 1.065053 GCTTCTTCTTCCTCTTCCCCC 60.065 57.143 0.00 0.00 0.00 5.40
868 909 1.630878 TGGCTTCTTCTTCCTCTTCCC 59.369 52.381 0.00 0.00 0.00 3.97
888 929 1.274712 CTTCTCTCTCCACTTGGGCT 58.725 55.000 0.00 0.00 36.21 5.19
889 930 0.392327 GCTTCTCTCTCCACTTGGGC 60.392 60.000 0.00 0.00 36.21 5.36
890 931 0.108424 CGCTTCTCTCTCCACTTGGG 60.108 60.000 0.00 0.00 35.41 4.12
916 958 3.104512 TCTCTCTCTCTCTCCGTCTTCT 58.895 50.000 0.00 0.00 0.00 2.85
933 975 3.051803 TCCCTCTCTCTCTCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
937 979 2.022035 TCCTCCCTCTCTCTCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
942 984 0.478507 CCCTCCTCCCTCTCTCTCTC 59.521 65.000 0.00 0.00 0.00 3.20
945 987 0.998945 CTCCCCTCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
2042 2087 4.803426 CCAGGAGCTCCGACACGC 62.803 72.222 26.95 1.06 42.08 5.34
2288 2334 2.151202 GGCTTTGAAGTCCATGTCGAA 58.849 47.619 0.00 0.00 0.00 3.71
2482 2528 7.925043 TGTACTCAACAGTTAACCTGAAAAA 57.075 32.000 0.88 0.00 44.49 1.94
2489 2535 5.468746 TGAGCAATGTACTCAACAGTTAACC 59.531 40.000 0.88 0.00 42.70 2.85
2523 2569 6.452872 GCTGACAATTTTTATACAGCAAAGCG 60.453 38.462 0.00 0.00 46.30 4.68
2614 2660 1.681793 GTGGAGCCGAGCTGAATAGTA 59.318 52.381 2.98 0.00 39.88 1.82
2635 2681 1.758280 ACGTAGTTGGGTCACTCACAA 59.242 47.619 0.00 0.00 37.78 3.33
2657 2703 6.924913 AACATCAGCTAATATCCTCTAGCA 57.075 37.500 6.86 0.00 42.51 3.49
2761 2807 1.977188 TACAGACGACGCACATCTTG 58.023 50.000 0.00 0.00 0.00 3.02
2785 2831 1.285962 ACTTCATCCTTGACCATGGGG 59.714 52.381 18.09 7.62 41.29 4.96
2900 2955 9.515226 ACCTAATCTAGCAAAACAGAAACAATA 57.485 29.630 0.00 0.00 0.00 1.90
2960 3016 7.134815 GGAGCACTGCTATACATTAAATTGTG 58.865 38.462 2.71 0.00 39.88 3.33
2963 3019 6.605119 AGGGAGCACTGCTATACATTAAATT 58.395 36.000 2.71 0.00 39.88 1.82
2964 3020 6.192970 AGGGAGCACTGCTATACATTAAAT 57.807 37.500 2.71 0.00 39.88 1.40
2965 3021 5.630415 AGGGAGCACTGCTATACATTAAA 57.370 39.130 2.71 0.00 39.88 1.52
2966 3022 5.630415 AAGGGAGCACTGCTATACATTAA 57.370 39.130 2.71 0.00 39.88 1.40
2967 3023 5.630415 AAAGGGAGCACTGCTATACATTA 57.370 39.130 2.71 0.00 39.88 1.90
3119 3180 5.246203 GGAGATCTAATGGCATGTACCACTA 59.754 44.000 0.00 0.00 44.17 2.74
3124 3185 6.166982 GGTTAGGAGATCTAATGGCATGTAC 58.833 44.000 0.00 0.00 39.82 2.90
3179 3240 7.584122 TGAGTAGTTTAGACAGAAACAGAGT 57.416 36.000 2.23 0.00 41.00 3.24
3295 3356 2.417515 CCAGCCTAGGAACTTTCTCGTC 60.418 54.545 14.75 0.00 41.75 4.20
3324 3385 5.316987 AGTGGTTTCTATAGCAGCAAAAGT 58.683 37.500 0.00 0.00 0.00 2.66
3415 3486 3.636300 TGCAGTGCAATAACTTCAAAGGT 59.364 39.130 17.26 0.00 34.76 3.50
3421 3492 4.228912 ACAAGTGCAGTGCAATAACTTC 57.771 40.909 21.67 5.36 41.47 3.01
3470 3541 1.166531 AGTTGGGCTCGACAAACTGC 61.167 55.000 6.76 0.00 0.00 4.40
3482 3553 7.095017 GCTTAGTATCTGAATGAATAGTTGGGC 60.095 40.741 0.00 0.00 0.00 5.36
3783 3854 3.054065 ACAAGATCTGGAATCAGGGGTTC 60.054 47.826 3.42 0.00 41.23 3.62
3972 4043 1.801913 GAGATCACGCGTCGCAAGT 60.802 57.895 18.75 4.87 39.48 3.16
4182 4253 2.586792 GCATCAGGAAGCCGGTCT 59.413 61.111 1.90 0.00 0.00 3.85
4194 4265 3.664025 CTCCGAAGCCACCGCATCA 62.664 63.158 0.00 0.00 37.52 3.07
4215 4286 4.627058 TGACGTTCACAAAGCTCTTGATA 58.373 39.130 13.35 1.59 0.00 2.15
4227 4298 2.829741 TGACATGGATGACGTTCACA 57.170 45.000 0.00 0.00 0.00 3.58
4287 4358 2.228343 CTCCTTTGAGTACGTCTCGGTT 59.772 50.000 0.00 0.00 45.46 4.44
4410 4481 1.593209 GTCGAACGTGTGCCCTTCA 60.593 57.895 0.00 0.00 0.00 3.02
4587 4658 3.524648 GACCGTGCCCGAGAAACCA 62.525 63.158 0.00 0.00 35.63 3.67
4590 4661 3.562779 GACGACCGTGCCCGAGAAA 62.563 63.158 0.00 0.00 35.63 2.52
4638 4709 3.968837 ATCCTACCGCACCGACCCA 62.969 63.158 0.00 0.00 0.00 4.51
4662 4733 1.980784 CTCTGATGGGGGCTGAGTGG 61.981 65.000 0.00 0.00 0.00 4.00
4663 4734 1.525923 CTCTGATGGGGGCTGAGTG 59.474 63.158 0.00 0.00 0.00 3.51
4664 4735 2.373707 GCTCTGATGGGGGCTGAGT 61.374 63.158 0.00 0.00 34.84 3.41
4665 4736 1.706995 ATGCTCTGATGGGGGCTGAG 61.707 60.000 0.00 0.00 35.29 3.35
4666 4737 1.695239 ATGCTCTGATGGGGGCTGA 60.695 57.895 0.00 0.00 0.00 4.26
4667 4738 1.228184 GATGCTCTGATGGGGGCTG 60.228 63.158 0.00 0.00 0.00 4.85
4668 4739 1.066585 ATGATGCTCTGATGGGGGCT 61.067 55.000 0.00 0.00 0.00 5.19
4669 4740 0.178970 AATGATGCTCTGATGGGGGC 60.179 55.000 0.00 0.00 0.00 5.80
4670 4741 2.364324 CAAAATGATGCTCTGATGGGGG 59.636 50.000 0.00 0.00 0.00 5.40
4681 4752 2.035576 GAGAGGGATGCCAAAATGATGC 59.964 50.000 5.86 0.00 0.00 3.91
4703 4774 2.374170 AGATTACCGAACCACCCAAAGT 59.626 45.455 0.00 0.00 0.00 2.66
4715 4792 8.525316 TCGCATTTTTCCTATATAGATTACCGA 58.475 33.333 11.53 6.09 0.00 4.69
4716 4793 8.697846 TCGCATTTTTCCTATATAGATTACCG 57.302 34.615 11.53 4.09 0.00 4.02
4790 4883 2.273776 GCCAGGGAAGCCTTCTCC 59.726 66.667 0.00 2.34 0.00 3.71
4862 4962 1.395045 AAGATGAGCGGCGATCCTGA 61.395 55.000 23.41 4.13 0.00 3.86
4900 5001 2.910688 TGTCTTCCTCCTTCACACAC 57.089 50.000 0.00 0.00 0.00 3.82
4978 5080 1.000955 TCAAGTTGCGAGAGGGAAGAC 59.999 52.381 0.00 0.00 0.00 3.01
4996 5098 9.187996 TGAGCATATATTTCAAGTTGGATTTCA 57.812 29.630 2.34 0.00 0.00 2.69
4998 5100 9.976511 CATGAGCATATATTTCAAGTTGGATTT 57.023 29.630 2.34 0.00 0.00 2.17
4999 5101 9.139734 ACATGAGCATATATTTCAAGTTGGATT 57.860 29.630 0.00 0.00 0.00 3.01
5000 5102 8.701908 ACATGAGCATATATTTCAAGTTGGAT 57.298 30.769 0.00 0.75 0.00 3.41
5001 5103 7.994911 AGACATGAGCATATATTTCAAGTTGGA 59.005 33.333 0.00 0.00 0.00 3.53
5002 5104 8.074370 CAGACATGAGCATATATTTCAAGTTGG 58.926 37.037 0.00 0.00 0.00 3.77
5014 5116 7.396907 AGAGCTTATCTACAGACATGAGCATAT 59.603 37.037 0.00 0.00 36.10 1.78
5032 5134 7.676683 TCAAACATTAGAGGGTAGAGCTTAT 57.323 36.000 0.00 0.00 0.00 1.73
5043 5171 5.997746 TCTGAACCACTTCAAACATTAGAGG 59.002 40.000 0.00 0.00 35.92 3.69
5049 5177 4.949856 ACAACTCTGAACCACTTCAAACAT 59.050 37.500 0.00 0.00 35.92 2.71
5077 5220 1.286257 AGGCTTGGGGAATCCTTTCTC 59.714 52.381 0.00 0.00 36.20 2.87
5078 5221 1.006400 CAGGCTTGGGGAATCCTTTCT 59.994 52.381 0.00 0.00 36.20 2.52
5082 5225 0.627986 CTTCAGGCTTGGGGAATCCT 59.372 55.000 0.00 0.00 36.20 3.24
5084 5227 3.117888 TCATACTTCAGGCTTGGGGAATC 60.118 47.826 0.00 0.00 0.00 2.52
5085 5228 2.852449 TCATACTTCAGGCTTGGGGAAT 59.148 45.455 0.00 0.00 0.00 3.01
5087 5230 1.965414 TCATACTTCAGGCTTGGGGA 58.035 50.000 0.00 0.00 0.00 4.81
5088 5231 2.025887 ACTTCATACTTCAGGCTTGGGG 60.026 50.000 0.00 0.00 0.00 4.96
5296 5448 1.213013 GGACGTCGAGCACATGTCT 59.787 57.895 9.92 0.00 0.00 3.41
5297 5449 0.450583 TAGGACGTCGAGCACATGTC 59.549 55.000 9.92 0.00 0.00 3.06
5353 5514 1.377994 CTTGGCTGAACTGGGAGCT 59.622 57.895 0.00 0.00 35.42 4.09
5400 5561 5.658468 ACGGCTTATTAGTTAGTTCCTGTC 58.342 41.667 0.00 0.00 0.00 3.51
5412 5573 3.255725 TCACGGTGAAACGGCTTATTAG 58.744 45.455 8.68 0.00 41.39 1.73
5471 5632 1.946768 CCTTTCCGAGTTTGCTTGTGA 59.053 47.619 0.00 0.00 0.00 3.58
5472 5633 1.001378 CCCTTTCCGAGTTTGCTTGTG 60.001 52.381 0.00 0.00 0.00 3.33
5473 5634 1.318576 CCCTTTCCGAGTTTGCTTGT 58.681 50.000 0.00 0.00 0.00 3.16
5474 5635 1.318576 ACCCTTTCCGAGTTTGCTTG 58.681 50.000 0.00 0.00 0.00 4.01
5475 5636 1.954382 GAACCCTTTCCGAGTTTGCTT 59.046 47.619 0.00 0.00 0.00 3.91
5476 5637 1.605753 GAACCCTTTCCGAGTTTGCT 58.394 50.000 0.00 0.00 0.00 3.91
5477 5638 0.237498 CGAACCCTTTCCGAGTTTGC 59.763 55.000 0.00 0.00 0.00 3.68
5478 5639 1.529865 GTCGAACCCTTTCCGAGTTTG 59.470 52.381 0.00 0.00 0.00 2.93
5479 5640 1.139455 TGTCGAACCCTTTCCGAGTTT 59.861 47.619 0.00 0.00 0.00 2.66
5480 5641 0.754472 TGTCGAACCCTTTCCGAGTT 59.246 50.000 0.00 0.00 0.00 3.01
5481 5642 0.033090 GTGTCGAACCCTTTCCGAGT 59.967 55.000 0.00 0.00 0.00 4.18
5482 5643 0.032952 TGTGTCGAACCCTTTCCGAG 59.967 55.000 0.00 0.00 0.00 4.63
5483 5644 0.682852 ATGTGTCGAACCCTTTCCGA 59.317 50.000 0.00 0.00 0.00 4.55
5484 5645 1.463444 GAATGTGTCGAACCCTTTCCG 59.537 52.381 0.00 0.00 0.00 4.30
5485 5646 2.500229 TGAATGTGTCGAACCCTTTCC 58.500 47.619 0.00 0.00 0.00 3.13
5486 5647 3.751175 TCATGAATGTGTCGAACCCTTTC 59.249 43.478 0.00 0.00 0.00 2.62
5487 5648 3.750371 TCATGAATGTGTCGAACCCTTT 58.250 40.909 0.00 0.00 0.00 3.11
5488 5649 3.417069 TCATGAATGTGTCGAACCCTT 57.583 42.857 0.00 0.00 0.00 3.95
5489 5650 3.273434 CATCATGAATGTGTCGAACCCT 58.727 45.455 0.00 0.00 0.00 4.34
5490 5651 2.223340 GCATCATGAATGTGTCGAACCC 60.223 50.000 0.00 0.00 37.71 4.11
5491 5652 2.679837 AGCATCATGAATGTGTCGAACC 59.320 45.455 0.00 0.00 37.71 3.62
5492 5653 5.469373 TTAGCATCATGAATGTGTCGAAC 57.531 39.130 0.00 0.00 37.71 3.95
5493 5654 6.018507 CAGATTAGCATCATGAATGTGTCGAA 60.019 38.462 0.00 0.00 37.71 3.71
5494 5655 5.464389 CAGATTAGCATCATGAATGTGTCGA 59.536 40.000 0.00 0.00 37.71 4.20
5495 5656 5.235831 ACAGATTAGCATCATGAATGTGTCG 59.764 40.000 0.00 0.00 33.23 4.35
5496 5657 6.615264 ACAGATTAGCATCATGAATGTGTC 57.385 37.500 0.00 0.00 33.23 3.67
5497 5658 6.183360 CCAACAGATTAGCATCATGAATGTGT 60.183 38.462 0.00 0.00 38.34 3.72
5498 5659 6.038936 TCCAACAGATTAGCATCATGAATGTG 59.961 38.462 0.00 0.00 37.71 3.21
5499 5660 6.039047 GTCCAACAGATTAGCATCATGAATGT 59.961 38.462 0.00 0.00 37.71 2.71
5500 5661 6.262496 AGTCCAACAGATTAGCATCATGAATG 59.738 38.462 0.00 0.00 38.50 2.67
5501 5662 6.363065 AGTCCAACAGATTAGCATCATGAAT 58.637 36.000 0.00 0.00 0.00 2.57
5502 5663 5.748402 AGTCCAACAGATTAGCATCATGAA 58.252 37.500 0.00 0.00 0.00 2.57
5503 5664 5.129980 AGAGTCCAACAGATTAGCATCATGA 59.870 40.000 0.00 0.00 0.00 3.07
5504 5665 5.366460 AGAGTCCAACAGATTAGCATCATG 58.634 41.667 0.00 0.00 0.00 3.07
5505 5666 5.627182 AGAGTCCAACAGATTAGCATCAT 57.373 39.130 0.00 0.00 0.00 2.45
5506 5667 5.426689 AAGAGTCCAACAGATTAGCATCA 57.573 39.130 0.00 0.00 0.00 3.07
5507 5668 5.065731 CCAAAGAGTCCAACAGATTAGCATC 59.934 44.000 0.00 0.00 0.00 3.91
5508 5669 4.946157 CCAAAGAGTCCAACAGATTAGCAT 59.054 41.667 0.00 0.00 0.00 3.79
5509 5670 4.041567 TCCAAAGAGTCCAACAGATTAGCA 59.958 41.667 0.00 0.00 0.00 3.49
5510 5671 4.579869 TCCAAAGAGTCCAACAGATTAGC 58.420 43.478 0.00 0.00 0.00 3.09
5511 5672 6.486657 TGTTTCCAAAGAGTCCAACAGATTAG 59.513 38.462 0.00 0.00 0.00 1.73
5512 5673 6.361433 TGTTTCCAAAGAGTCCAACAGATTA 58.639 36.000 0.00 0.00 0.00 1.75
5513 5674 5.200483 TGTTTCCAAAGAGTCCAACAGATT 58.800 37.500 0.00 0.00 0.00 2.40
5514 5675 4.792068 TGTTTCCAAAGAGTCCAACAGAT 58.208 39.130 0.00 0.00 0.00 2.90
5515 5676 4.229304 TGTTTCCAAAGAGTCCAACAGA 57.771 40.909 0.00 0.00 0.00 3.41
5516 5677 4.981806 TTGTTTCCAAAGAGTCCAACAG 57.018 40.909 0.00 0.00 0.00 3.16
5527 5688 4.100808 CCCTCATGTTCCTTTGTTTCCAAA 59.899 41.667 0.00 0.00 38.22 3.28
5528 5689 3.640967 CCCTCATGTTCCTTTGTTTCCAA 59.359 43.478 0.00 0.00 0.00 3.53
5529 5690 3.230134 CCCTCATGTTCCTTTGTTTCCA 58.770 45.455 0.00 0.00 0.00 3.53
5530 5691 3.230976 ACCCTCATGTTCCTTTGTTTCC 58.769 45.455 0.00 0.00 0.00 3.13
5531 5692 4.145052 AGACCCTCATGTTCCTTTGTTTC 58.855 43.478 0.00 0.00 0.00 2.78
5532 5693 4.184649 AGACCCTCATGTTCCTTTGTTT 57.815 40.909 0.00 0.00 0.00 2.83
5533 5694 3.884037 AGACCCTCATGTTCCTTTGTT 57.116 42.857 0.00 0.00 0.00 2.83
5534 5695 3.756117 GAAGACCCTCATGTTCCTTTGT 58.244 45.455 0.00 0.00 0.00 2.83
5535 5696 2.744202 CGAAGACCCTCATGTTCCTTTG 59.256 50.000 0.00 0.00 0.00 2.77
5536 5697 2.290323 CCGAAGACCCTCATGTTCCTTT 60.290 50.000 0.00 0.00 0.00 3.11
5537 5698 1.279271 CCGAAGACCCTCATGTTCCTT 59.721 52.381 0.00 0.00 0.00 3.36
5538 5699 0.905357 CCGAAGACCCTCATGTTCCT 59.095 55.000 0.00 0.00 0.00 3.36
5539 5700 0.744771 GCCGAAGACCCTCATGTTCC 60.745 60.000 0.00 0.00 0.00 3.62
5540 5701 0.250513 AGCCGAAGACCCTCATGTTC 59.749 55.000 0.00 0.00 0.00 3.18
5541 5702 0.250513 GAGCCGAAGACCCTCATGTT 59.749 55.000 0.00 0.00 0.00 2.71
5542 5703 0.904865 TGAGCCGAAGACCCTCATGT 60.905 55.000 0.00 0.00 31.16 3.21
5543 5704 0.179089 CTGAGCCGAAGACCCTCATG 60.179 60.000 0.00 0.00 35.30 3.07
5544 5705 1.333636 CCTGAGCCGAAGACCCTCAT 61.334 60.000 0.00 0.00 35.30 2.90
5545 5706 1.984570 CCTGAGCCGAAGACCCTCA 60.985 63.158 0.00 0.00 34.68 3.86
5546 5707 1.950973 GACCTGAGCCGAAGACCCTC 61.951 65.000 0.00 0.00 0.00 4.30
5547 5708 1.985116 GACCTGAGCCGAAGACCCT 60.985 63.158 0.00 0.00 0.00 4.34
5548 5709 1.827399 TTGACCTGAGCCGAAGACCC 61.827 60.000 0.00 0.00 0.00 4.46
5549 5710 0.390472 CTTGACCTGAGCCGAAGACC 60.390 60.000 0.00 0.00 0.00 3.85
5550 5711 0.318762 ACTTGACCTGAGCCGAAGAC 59.681 55.000 0.00 0.00 0.00 3.01
5551 5712 0.603569 GACTTGACCTGAGCCGAAGA 59.396 55.000 0.00 0.00 0.00 2.87
5552 5713 0.318441 TGACTTGACCTGAGCCGAAG 59.682 55.000 0.00 0.00 0.00 3.79
5553 5714 0.756294 TTGACTTGACCTGAGCCGAA 59.244 50.000 0.00 0.00 0.00 4.30
5554 5715 0.318441 CTTGACTTGACCTGAGCCGA 59.682 55.000 0.00 0.00 0.00 5.54
5555 5716 0.318441 TCTTGACTTGACCTGAGCCG 59.682 55.000 0.00 0.00 0.00 5.52
5556 5717 2.550830 TTCTTGACTTGACCTGAGCC 57.449 50.000 0.00 0.00 0.00 4.70
5557 5718 4.633565 CCTTATTCTTGACTTGACCTGAGC 59.366 45.833 0.00 0.00 0.00 4.26
5558 5719 5.181748 CCCTTATTCTTGACTTGACCTGAG 58.818 45.833 0.00 0.00 0.00 3.35
5559 5720 4.597507 ACCCTTATTCTTGACTTGACCTGA 59.402 41.667 0.00 0.00 0.00 3.86
5560 5721 4.697352 CACCCTTATTCTTGACTTGACCTG 59.303 45.833 0.00 0.00 0.00 4.00
5561 5722 4.597507 TCACCCTTATTCTTGACTTGACCT 59.402 41.667 0.00 0.00 0.00 3.85
5562 5723 4.695928 GTCACCCTTATTCTTGACTTGACC 59.304 45.833 0.00 0.00 36.29 4.02
5563 5724 5.179555 GTGTCACCCTTATTCTTGACTTGAC 59.820 44.000 0.00 0.00 39.33 3.18
5564 5725 5.305585 GTGTCACCCTTATTCTTGACTTGA 58.694 41.667 0.00 0.00 39.33 3.02
5565 5726 4.152402 CGTGTCACCCTTATTCTTGACTTG 59.848 45.833 0.00 0.00 39.33 3.16
5566 5727 4.315803 CGTGTCACCCTTATTCTTGACTT 58.684 43.478 0.00 0.00 39.33 3.01
5567 5728 3.306780 CCGTGTCACCCTTATTCTTGACT 60.307 47.826 0.00 0.00 39.33 3.41
5568 5729 3.000727 CCGTGTCACCCTTATTCTTGAC 58.999 50.000 0.00 0.00 39.09 3.18
5569 5730 2.635915 ACCGTGTCACCCTTATTCTTGA 59.364 45.455 0.00 0.00 0.00 3.02
5570 5731 2.742053 CACCGTGTCACCCTTATTCTTG 59.258 50.000 0.00 0.00 0.00 3.02
5571 5732 2.290071 CCACCGTGTCACCCTTATTCTT 60.290 50.000 0.00 0.00 0.00 2.52
5572 5733 1.278127 CCACCGTGTCACCCTTATTCT 59.722 52.381 0.00 0.00 0.00 2.40
5573 5734 1.276989 TCCACCGTGTCACCCTTATTC 59.723 52.381 0.00 0.00 0.00 1.75
5574 5735 1.002773 GTCCACCGTGTCACCCTTATT 59.997 52.381 0.00 0.00 0.00 1.40
5575 5736 0.611714 GTCCACCGTGTCACCCTTAT 59.388 55.000 0.00 0.00 0.00 1.73
5576 5737 0.759812 TGTCCACCGTGTCACCCTTA 60.760 55.000 0.00 0.00 0.00 2.69
5577 5738 1.415672 ATGTCCACCGTGTCACCCTT 61.416 55.000 0.00 0.00 0.00 3.95
5578 5739 1.841556 ATGTCCACCGTGTCACCCT 60.842 57.895 0.00 0.00 0.00 4.34
5579 5740 1.671054 CATGTCCACCGTGTCACCC 60.671 63.158 0.00 0.00 0.00 4.61
5580 5741 0.036388 ATCATGTCCACCGTGTCACC 60.036 55.000 0.00 0.00 0.00 4.02
5581 5742 1.066858 AGATCATGTCCACCGTGTCAC 60.067 52.381 0.00 0.00 0.00 3.67
5582 5743 1.266178 AGATCATGTCCACCGTGTCA 58.734 50.000 0.00 0.00 0.00 3.58
5583 5744 2.271800 GAAGATCATGTCCACCGTGTC 58.728 52.381 0.00 0.00 0.00 3.67
5584 5745 1.404181 CGAAGATCATGTCCACCGTGT 60.404 52.381 0.00 0.00 0.00 4.49
5585 5746 1.135112 TCGAAGATCATGTCCACCGTG 60.135 52.381 0.00 0.00 0.00 4.94
5586 5747 1.135083 GTCGAAGATCATGTCCACCGT 60.135 52.381 0.00 0.00 40.67 4.83
5587 5748 1.560923 GTCGAAGATCATGTCCACCG 58.439 55.000 0.00 0.00 40.67 4.94
5588 5749 1.134367 TCGTCGAAGATCATGTCCACC 59.866 52.381 0.00 0.00 40.67 4.61
5589 5750 2.159366 AGTCGTCGAAGATCATGTCCAC 60.159 50.000 3.90 0.00 40.67 4.02
5590 5751 2.092323 AGTCGTCGAAGATCATGTCCA 58.908 47.619 3.90 0.00 40.67 4.02
5591 5752 2.853731 AGTCGTCGAAGATCATGTCC 57.146 50.000 3.90 0.00 40.67 4.02
5592 5753 3.759418 TCAAGTCGTCGAAGATCATGTC 58.241 45.455 3.90 0.00 40.67 3.06
5593 5754 3.428180 CCTCAAGTCGTCGAAGATCATGT 60.428 47.826 3.90 0.00 40.67 3.21
5594 5755 3.111838 CCTCAAGTCGTCGAAGATCATG 58.888 50.000 3.90 4.70 40.67 3.07
5595 5756 3.017442 TCCTCAAGTCGTCGAAGATCAT 58.983 45.455 3.90 0.00 40.67 2.45
5596 5757 2.161808 GTCCTCAAGTCGTCGAAGATCA 59.838 50.000 3.90 0.00 40.67 2.92
5597 5758 2.420722 AGTCCTCAAGTCGTCGAAGATC 59.579 50.000 3.90 0.00 40.67 2.75
5598 5759 2.438411 AGTCCTCAAGTCGTCGAAGAT 58.562 47.619 3.90 0.00 40.67 2.40
5599 5760 1.893544 AGTCCTCAAGTCGTCGAAGA 58.106 50.000 0.00 0.00 0.00 2.87
5600 5761 2.320367 CAAGTCCTCAAGTCGTCGAAG 58.680 52.381 0.00 0.00 0.00 3.79
5601 5762 1.000607 CCAAGTCCTCAAGTCGTCGAA 60.001 52.381 0.00 0.00 0.00 3.71
5602 5763 0.596577 CCAAGTCCTCAAGTCGTCGA 59.403 55.000 0.00 0.00 0.00 4.20
5603 5764 0.388649 CCCAAGTCCTCAAGTCGTCG 60.389 60.000 0.00 0.00 0.00 5.12
5604 5765 0.037232 CCCCAAGTCCTCAAGTCGTC 60.037 60.000 0.00 0.00 0.00 4.20
5605 5766 2.058675 CCCCAAGTCCTCAAGTCGT 58.941 57.895 0.00 0.00 0.00 4.34
5606 5767 1.376037 GCCCCAAGTCCTCAAGTCG 60.376 63.158 0.00 0.00 0.00 4.18
5607 5768 1.002011 GGCCCCAAGTCCTCAAGTC 60.002 63.158 0.00 0.00 0.00 3.01
5608 5769 1.774217 TGGCCCCAAGTCCTCAAGT 60.774 57.895 0.00 0.00 0.00 3.16
5609 5770 1.303643 GTGGCCCCAAGTCCTCAAG 60.304 63.158 0.00 0.00 0.00 3.02
5610 5771 2.843545 GTGGCCCCAAGTCCTCAA 59.156 61.111 0.00 0.00 0.00 3.02
5611 5772 3.636231 CGTGGCCCCAAGTCCTCA 61.636 66.667 0.00 0.00 0.00 3.86
5612 5773 4.410400 CCGTGGCCCCAAGTCCTC 62.410 72.222 0.00 0.00 0.00 3.71
5624 5785 3.726517 CAAACGCTCCTGCCGTGG 61.727 66.667 0.00 0.00 35.36 4.94
5625 5786 3.726517 CCAAACGCTCCTGCCGTG 61.727 66.667 0.00 0.00 35.36 4.94
5626 5787 3.883744 CTCCAAACGCTCCTGCCGT 62.884 63.158 0.00 0.00 35.36 5.68
5627 5788 3.121030 CTCCAAACGCTCCTGCCG 61.121 66.667 0.00 0.00 35.36 5.69
5628 5789 2.747855 CCTCCAAACGCTCCTGCC 60.748 66.667 0.00 0.00 35.36 4.85
5629 5790 2.035442 GTCCTCCAAACGCTCCTGC 61.035 63.158 0.00 0.00 0.00 4.85
5630 5791 0.250295 TTGTCCTCCAAACGCTCCTG 60.250 55.000 0.00 0.00 0.00 3.86
5631 5792 0.250338 GTTGTCCTCCAAACGCTCCT 60.250 55.000 0.00 0.00 34.07 3.69
5632 5793 0.250338 AGTTGTCCTCCAAACGCTCC 60.250 55.000 0.00 0.00 34.07 4.70
5633 5794 2.338500 CTAGTTGTCCTCCAAACGCTC 58.662 52.381 0.00 0.00 34.07 5.03
5634 5795 2.457366 CTAGTTGTCCTCCAAACGCT 57.543 50.000 0.00 0.00 34.07 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.