Multiple sequence alignment - TraesCS1D01G219300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1D01G219300 chr1D 100.000 4399 0 0 1 4399 307210731 307206333 0.000000e+00 8124.0
1 TraesCS1D01G219300 chr1D 88.393 448 50 2 1 446 469610717 469610270 5.010000e-149 538.0
2 TraesCS1D01G219300 chr1D 87.723 448 52 3 1 446 375353268 375352822 1.810000e-143 520.0
3 TraesCS1D01G219300 chr1D 100.000 43 0 0 473 515 250295023 250294981 3.650000e-11 80.5
4 TraesCS1D01G219300 chr1D 100.000 43 0 0 473 515 450000001 450000043 3.650000e-11 80.5
5 TraesCS1D01G219300 chr1D 100.000 28 0 0 450 477 307210851 307210878 8.000000e-03 52.8
6 TraesCS1D01G219300 chr1A 96.211 1689 47 8 2042 3716 385651695 385650010 0.000000e+00 2748.0
7 TraesCS1D01G219300 chr1A 91.563 1529 61 17 522 2031 385653397 385651918 0.000000e+00 2047.0
8 TraesCS1D01G219300 chr1A 100.000 43 0 0 473 515 253810655 253810697 3.650000e-11 80.5
9 TraesCS1D01G219300 chr1B 93.344 1247 41 18 811 2039 414778926 414777704 0.000000e+00 1805.0
10 TraesCS1D01G219300 chr1B 97.376 1029 24 2 2042 3070 414777243 414776218 0.000000e+00 1748.0
11 TraesCS1D01G219300 chr1B 93.788 660 29 4 3065 3716 414776109 414775454 0.000000e+00 981.0
12 TraesCS1D01G219300 chr1B 88.610 439 25 5 3716 4154 646560278 646560691 1.090000e-140 510.0
13 TraesCS1D01G219300 chr1B 94.253 174 10 0 4226 4399 646571636 646571809 2.610000e-67 267.0
14 TraesCS1D01G219300 chr1B 86.286 175 6 6 629 787 414793140 414792968 1.630000e-39 174.0
15 TraesCS1D01G219300 chr1B 100.000 28 0 0 771 798 414778953 414778926 8.000000e-03 52.8
16 TraesCS1D01G219300 chr2D 91.241 685 22 10 3716 4399 352710480 352709833 0.000000e+00 898.0
17 TraesCS1D01G219300 chr2D 90.816 686 34 11 3714 4399 461077825 461078481 0.000000e+00 891.0
18 TraesCS1D01G219300 chr2D 95.495 111 5 0 4289 4399 432080344 432080454 1.260000e-40 178.0
19 TraesCS1D01G219300 chr2D 90.756 119 10 1 516 633 630625301 630625183 1.640000e-34 158.0
20 TraesCS1D01G219300 chr7D 88.839 448 48 2 1 446 610839347 610839794 2.310000e-152 549.0
21 TraesCS1D01G219300 chr7D 90.074 403 24 4 3733 4124 171028638 171028241 3.930000e-140 508.0
22 TraesCS1D01G219300 chr7D 88.202 356 27 12 4052 4399 171028372 171028024 1.140000e-110 411.0
23 TraesCS1D01G219300 chr3B 88.235 442 50 2 7 446 749489207 749488766 1.080000e-145 527.0
24 TraesCS1D01G219300 chr3B 88.462 130 14 1 516 644 791859429 791859300 5.890000e-34 156.0
25 TraesCS1D01G219300 chr3B 79.188 197 28 13 3714 3904 793361525 793361336 1.660000e-24 124.0
26 TraesCS1D01G219300 chr4A 87.723 448 53 2 1 446 709619695 709620142 5.040000e-144 521.0
27 TraesCS1D01G219300 chrUn 87.838 444 49 3 1 442 46069667 46070107 2.350000e-142 516.0
28 TraesCS1D01G219300 chr7A 87.500 448 54 2 1 446 670686044 670686491 2.350000e-142 516.0
29 TraesCS1D01G219300 chr7A 90.756 119 10 1 516 633 690381935 690381817 1.640000e-34 158.0
30 TraesCS1D01G219300 chr6D 87.500 448 54 2 1 446 68329306 68328859 2.350000e-142 516.0
31 TraesCS1D01G219300 chr6D 100.000 43 0 0 473 515 77058510 77058468 3.650000e-11 80.5
32 TraesCS1D01G219300 chr4B 87.500 448 53 3 1 446 500108597 500109043 8.440000e-142 514.0
33 TraesCS1D01G219300 chr4B 90.244 123 12 0 516 638 161559701 161559823 1.270000e-35 161.0
34 TraesCS1D01G219300 chr6B 92.949 156 9 2 4120 4275 653215821 653215668 4.430000e-55 226.0
35 TraesCS1D01G219300 chr2B 80.385 260 44 7 3714 3972 2644238 2644491 1.610000e-44 191.0
36 TraesCS1D01G219300 chr2B 95.495 111 5 0 4289 4399 510897352 510897462 1.260000e-40 178.0
37 TraesCS1D01G219300 chr2B 90.244 123 12 0 516 638 693066124 693066246 1.270000e-35 161.0
38 TraesCS1D01G219300 chr2A 96.396 111 4 0 4289 4399 554415677 554415567 2.700000e-42 183.0
39 TraesCS1D01G219300 chr4D 90.164 122 10 2 516 637 111131776 111131657 1.640000e-34 158.0
40 TraesCS1D01G219300 chr4D 89.431 123 13 0 516 638 501273241 501273363 5.890000e-34 156.0
41 TraesCS1D01G219300 chr4D 100.000 43 0 0 473 515 371570573 371570615 3.650000e-11 80.5
42 TraesCS1D01G219300 chr5D 89.516 124 12 1 516 638 486903860 486903737 5.890000e-34 156.0
43 TraesCS1D01G219300 chr5D 100.000 43 0 0 473 515 401430766 401430808 3.650000e-11 80.5
44 TraesCS1D01G219300 chr5B 91.525 59 5 0 473 531 627670582 627670640 1.010000e-11 82.4
45 TraesCS1D01G219300 chr3D 100.000 43 0 0 473 515 503244148 503244106 3.650000e-11 80.5
46 TraesCS1D01G219300 chr3D 84.375 64 6 4 3713 3774 466799133 466799194 4.750000e-05 60.2
47 TraesCS1D01G219300 chr7B 87.500 64 6 2 473 534 66751107 66751044 6.100000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1D01G219300 chr1D 307206333 307210731 4398 True 8124.0 8124 100.000 1 4399 1 chr1D.!!$R2 4398
1 TraesCS1D01G219300 chr1A 385650010 385653397 3387 True 2397.5 2748 93.887 522 3716 2 chr1A.!!$R1 3194
2 TraesCS1D01G219300 chr1B 414775454 414778953 3499 True 1146.7 1805 96.127 771 3716 4 chr1B.!!$R2 2945
3 TraesCS1D01G219300 chr2D 352709833 352710480 647 True 898.0 898 91.241 3716 4399 1 chr2D.!!$R1 683
4 TraesCS1D01G219300 chr2D 461077825 461078481 656 False 891.0 891 90.816 3714 4399 1 chr2D.!!$F2 685
5 TraesCS1D01G219300 chr7D 171028024 171028638 614 True 459.5 508 89.138 3733 4399 2 chr7D.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 362 0.034337 GTTCTGGTGCGTTGGTCCTA 59.966 55.0 0.00 0.00 0.0 2.94 F
802 805 0.105224 CACATGGCCCGTACGGATTA 59.895 55.0 35.41 19.82 37.5 1.75 F
803 806 0.105408 ACATGGCCCGTACGGATTAC 59.895 55.0 35.41 20.65 37.5 1.89 F
804 807 0.105224 CATGGCCCGTACGGATTACA 59.895 55.0 35.41 25.09 37.5 2.41 F
806 809 0.108233 TGGCCCGTACGGATTACAAC 60.108 55.0 35.41 15.98 37.5 3.32 F
1305 1317 0.782384 GTCGAACAGTTAGTGCCGTG 59.218 55.0 0.00 0.00 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1372 1384 0.036164 TGGTGTGTGCCTTAATCGCT 59.964 50.000 0.00 0.00 0.00 4.93 R
2582 3066 0.527113 CTGGCCACGCAATTCATGAA 59.473 50.000 11.26 11.26 0.00 2.57 R
3073 3671 0.315886 TCAGTTGAGCCGCGAGTAAA 59.684 50.000 8.23 0.00 0.00 2.01 R
3083 3681 2.426522 TGGCAATACTGTCAGTTGAGC 58.573 47.619 11.54 12.00 30.26 4.26 R
3125 3729 7.229907 ACTGTAAACCATTCCGTACAAGAAAAT 59.770 33.333 0.00 0.00 0.00 1.82 R
3604 4214 2.223144 CCACACATCACTTGTTGTACCG 59.777 50.000 0.00 0.00 36.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.510411 TAGGGCCATGGATGTGCG 59.490 61.111 18.40 0.00 0.00 5.34
18 19 3.118768 TAGGGCCATGGATGTGCGG 62.119 63.158 18.40 0.00 0.00 5.69
19 20 4.820744 GGGCCATGGATGTGCGGT 62.821 66.667 18.40 0.00 0.00 5.68
20 21 3.520862 GGCCATGGATGTGCGGTG 61.521 66.667 18.40 0.00 0.00 4.94
21 22 3.520862 GCCATGGATGTGCGGTGG 61.521 66.667 18.40 0.00 0.00 4.61
22 23 2.271821 CCATGGATGTGCGGTGGA 59.728 61.111 5.56 0.00 31.59 4.02
23 24 1.152902 CCATGGATGTGCGGTGGAT 60.153 57.895 5.56 0.00 31.59 3.41
24 25 1.168407 CCATGGATGTGCGGTGGATC 61.168 60.000 5.56 0.00 31.59 3.36
25 26 1.149174 ATGGATGTGCGGTGGATCC 59.851 57.895 4.20 4.20 36.87 3.36
26 27 1.348008 ATGGATGTGCGGTGGATCCT 61.348 55.000 14.23 0.00 37.20 3.24
27 28 1.524621 GGATGTGCGGTGGATCCTG 60.525 63.158 14.23 4.04 34.00 3.86
28 29 1.221840 GATGTGCGGTGGATCCTGT 59.778 57.895 14.23 0.00 0.00 4.00
29 30 0.811616 GATGTGCGGTGGATCCTGTC 60.812 60.000 14.23 3.54 0.00 3.51
37 38 2.190578 GGATCCTGTCCCTTGCCG 59.809 66.667 3.84 0.00 41.50 5.69
38 39 2.190578 GATCCTGTCCCTTGCCGG 59.809 66.667 0.00 0.00 0.00 6.13
39 40 4.115199 ATCCTGTCCCTTGCCGGC 62.115 66.667 22.73 22.73 0.00 6.13
58 59 3.982829 GGAGGGCTCCGTTTTCAC 58.017 61.111 0.00 0.00 40.36 3.18
59 60 2.033194 GGAGGGCTCCGTTTTCACG 61.033 63.158 0.00 0.00 46.71 4.35
60 61 1.301479 GAGGGCTCCGTTTTCACGT 60.301 57.895 0.00 0.00 45.62 4.49
61 62 1.566018 GAGGGCTCCGTTTTCACGTG 61.566 60.000 9.94 9.94 45.62 4.49
62 63 2.251371 GGCTCCGTTTTCACGTGC 59.749 61.111 11.67 0.00 45.62 5.34
63 64 2.251642 GGCTCCGTTTTCACGTGCT 61.252 57.895 11.67 0.00 45.62 4.40
64 65 1.647084 GCTCCGTTTTCACGTGCTT 59.353 52.632 11.67 0.00 45.62 3.91
65 66 0.384353 GCTCCGTTTTCACGTGCTTC 60.384 55.000 11.67 0.31 45.62 3.86
66 67 1.217882 CTCCGTTTTCACGTGCTTCT 58.782 50.000 11.67 0.00 45.62 2.85
67 68 1.597663 CTCCGTTTTCACGTGCTTCTT 59.402 47.619 11.67 0.00 45.62 2.52
68 69 1.595794 TCCGTTTTCACGTGCTTCTTC 59.404 47.619 11.67 0.00 45.62 2.87
69 70 1.329292 CCGTTTTCACGTGCTTCTTCA 59.671 47.619 11.67 0.00 45.62 3.02
70 71 2.223157 CCGTTTTCACGTGCTTCTTCAA 60.223 45.455 11.67 0.00 45.62 2.69
71 72 3.029074 CGTTTTCACGTGCTTCTTCAAG 58.971 45.455 11.67 0.00 41.84 3.02
72 73 3.485216 CGTTTTCACGTGCTTCTTCAAGT 60.485 43.478 11.67 0.00 41.84 3.16
73 74 4.412207 GTTTTCACGTGCTTCTTCAAGTT 58.588 39.130 11.67 0.00 31.45 2.66
74 75 4.695217 TTTCACGTGCTTCTTCAAGTTT 57.305 36.364 11.67 0.00 31.45 2.66
75 76 4.695217 TTCACGTGCTTCTTCAAGTTTT 57.305 36.364 11.67 0.00 31.45 2.43
76 77 4.695217 TCACGTGCTTCTTCAAGTTTTT 57.305 36.364 11.67 0.00 31.45 1.94
97 98 4.919774 TTTAGGGTTTATGTCCTGCTCA 57.080 40.909 0.00 0.00 34.75 4.26
98 99 4.919774 TTAGGGTTTATGTCCTGCTCAA 57.080 40.909 0.00 0.00 34.75 3.02
99 100 3.356529 AGGGTTTATGTCCTGCTCAAG 57.643 47.619 0.00 0.00 31.11 3.02
100 101 2.912956 AGGGTTTATGTCCTGCTCAAGA 59.087 45.455 0.00 0.00 31.11 3.02
101 102 3.330701 AGGGTTTATGTCCTGCTCAAGAA 59.669 43.478 0.00 0.00 31.11 2.52
102 103 3.691609 GGGTTTATGTCCTGCTCAAGAAG 59.308 47.826 0.00 0.00 0.00 2.85
103 104 4.565652 GGGTTTATGTCCTGCTCAAGAAGA 60.566 45.833 0.00 0.00 0.00 2.87
104 105 4.393371 GGTTTATGTCCTGCTCAAGAAGAC 59.607 45.833 0.00 0.00 0.00 3.01
105 106 2.376808 ATGTCCTGCTCAAGAAGACG 57.623 50.000 0.00 0.00 0.00 4.18
106 107 1.328279 TGTCCTGCTCAAGAAGACGA 58.672 50.000 0.00 0.00 0.00 4.20
107 108 1.270826 TGTCCTGCTCAAGAAGACGAG 59.729 52.381 0.00 0.00 0.00 4.18
108 109 1.542030 GTCCTGCTCAAGAAGACGAGA 59.458 52.381 0.00 0.00 0.00 4.04
109 110 2.165437 GTCCTGCTCAAGAAGACGAGAT 59.835 50.000 0.00 0.00 0.00 2.75
110 111 2.165234 TCCTGCTCAAGAAGACGAGATG 59.835 50.000 0.00 0.00 0.00 2.90
111 112 2.165234 CCTGCTCAAGAAGACGAGATGA 59.835 50.000 0.00 0.00 0.00 2.92
112 113 3.178267 CTGCTCAAGAAGACGAGATGAC 58.822 50.000 0.00 0.00 0.00 3.06
113 114 2.181205 GCTCAAGAAGACGAGATGACG 58.819 52.381 0.00 0.00 39.31 4.35
114 115 2.159503 GCTCAAGAAGACGAGATGACGA 60.160 50.000 0.00 0.00 37.03 4.20
115 116 3.421741 CTCAAGAAGACGAGATGACGAC 58.578 50.000 0.00 0.00 37.03 4.34
116 117 2.159693 TCAAGAAGACGAGATGACGACG 60.160 50.000 0.00 0.00 37.03 5.12
117 118 1.723220 AGAAGACGAGATGACGACGA 58.277 50.000 0.00 0.00 37.03 4.20
118 119 1.394227 AGAAGACGAGATGACGACGAC 59.606 52.381 0.00 0.00 37.03 4.34
119 120 1.394227 GAAGACGAGATGACGACGACT 59.606 52.381 0.00 0.00 37.03 4.18
120 121 1.440708 AGACGAGATGACGACGACTT 58.559 50.000 0.00 0.00 37.03 3.01
121 122 1.394227 AGACGAGATGACGACGACTTC 59.606 52.381 0.00 3.24 37.03 3.01
122 123 1.394227 GACGAGATGACGACGACTTCT 59.606 52.381 13.76 13.76 37.03 2.85
123 124 1.805345 ACGAGATGACGACGACTTCTT 59.195 47.619 14.71 0.81 37.03 2.52
124 125 2.169974 CGAGATGACGACGACTTCTTG 58.830 52.381 14.71 13.94 35.09 3.02
125 126 2.159693 CGAGATGACGACGACTTCTTGA 60.160 50.000 18.93 0.00 35.09 3.02
126 127 3.667166 CGAGATGACGACGACTTCTTGAA 60.667 47.826 18.93 0.00 35.09 2.69
127 128 3.827625 AGATGACGACGACTTCTTGAAG 58.172 45.455 0.00 8.65 0.00 3.02
128 129 3.502595 AGATGACGACGACTTCTTGAAGA 59.497 43.478 16.21 0.00 0.00 2.87
129 130 3.917329 TGACGACGACTTCTTGAAGAT 57.083 42.857 16.21 2.02 0.00 2.40
130 131 3.565516 TGACGACGACTTCTTGAAGATG 58.434 45.455 16.21 6.55 0.00 2.90
131 132 2.917971 GACGACGACTTCTTGAAGATGG 59.082 50.000 16.21 4.06 0.00 3.51
132 133 2.557056 ACGACGACTTCTTGAAGATGGA 59.443 45.455 16.21 0.00 0.00 3.41
133 134 3.005472 ACGACGACTTCTTGAAGATGGAA 59.995 43.478 16.21 0.00 0.00 3.53
134 135 4.177026 CGACGACTTCTTGAAGATGGAAT 58.823 43.478 16.21 0.00 0.00 3.01
135 136 5.105877 ACGACGACTTCTTGAAGATGGAATA 60.106 40.000 16.21 0.00 0.00 1.75
136 137 5.805486 CGACGACTTCTTGAAGATGGAATAA 59.195 40.000 16.21 0.00 0.00 1.40
137 138 6.020281 CGACGACTTCTTGAAGATGGAATAAG 60.020 42.308 16.21 0.37 0.00 1.73
138 139 6.109359 ACGACTTCTTGAAGATGGAATAAGG 58.891 40.000 16.21 0.00 0.00 2.69
139 140 6.109359 CGACTTCTTGAAGATGGAATAAGGT 58.891 40.000 16.21 0.00 0.00 3.50
140 141 6.595716 CGACTTCTTGAAGATGGAATAAGGTT 59.404 38.462 16.21 0.00 0.00 3.50
141 142 7.201565 CGACTTCTTGAAGATGGAATAAGGTTC 60.202 40.741 16.21 0.00 0.00 3.62
142 143 7.694093 ACTTCTTGAAGATGGAATAAGGTTCT 58.306 34.615 16.21 0.00 0.00 3.01
143 144 7.826744 ACTTCTTGAAGATGGAATAAGGTTCTC 59.173 37.037 16.21 0.00 0.00 2.87
144 145 6.653989 TCTTGAAGATGGAATAAGGTTCTCC 58.346 40.000 0.00 0.00 0.00 3.71
145 146 5.373812 TGAAGATGGAATAAGGTTCTCCC 57.626 43.478 0.00 0.00 0.00 4.30
146 147 4.166144 TGAAGATGGAATAAGGTTCTCCCC 59.834 45.833 0.00 0.00 0.00 4.81
147 148 3.747852 AGATGGAATAAGGTTCTCCCCA 58.252 45.455 0.00 0.00 0.00 4.96
148 149 3.459969 AGATGGAATAAGGTTCTCCCCAC 59.540 47.826 0.00 0.00 0.00 4.61
149 150 1.920351 TGGAATAAGGTTCTCCCCACC 59.080 52.381 0.00 0.00 34.06 4.61
151 152 3.246572 TGGAATAAGGTTCTCCCCACCTA 60.247 47.826 0.00 0.00 44.48 3.08
152 153 3.391626 GGAATAAGGTTCTCCCCACCTAG 59.608 52.174 0.00 0.00 44.48 3.02
153 154 3.797671 ATAAGGTTCTCCCCACCTAGT 57.202 47.619 0.00 0.00 44.48 2.57
154 155 1.954035 AAGGTTCTCCCCACCTAGTC 58.046 55.000 0.00 0.00 44.48 2.59
155 156 0.042881 AGGTTCTCCCCACCTAGTCC 59.957 60.000 0.00 0.00 43.34 3.85
156 157 0.981801 GGTTCTCCCCACCTAGTCCC 60.982 65.000 0.00 0.00 0.00 4.46
157 158 0.981801 GTTCTCCCCACCTAGTCCCC 60.982 65.000 0.00 0.00 0.00 4.81
158 159 2.444140 CTCCCCACCTAGTCCCCG 60.444 72.222 0.00 0.00 0.00 5.73
159 160 3.278519 TCCCCACCTAGTCCCCGT 61.279 66.667 0.00 0.00 0.00 5.28
160 161 2.762875 CCCCACCTAGTCCCCGTC 60.763 72.222 0.00 0.00 0.00 4.79
161 162 2.762875 CCCACCTAGTCCCCGTCC 60.763 72.222 0.00 0.00 0.00 4.79
162 163 2.762875 CCACCTAGTCCCCGTCCC 60.763 72.222 0.00 0.00 0.00 4.46
163 164 3.145551 CACCTAGTCCCCGTCCCG 61.146 72.222 0.00 0.00 0.00 5.14
164 165 3.341629 ACCTAGTCCCCGTCCCGA 61.342 66.667 0.00 0.00 0.00 5.14
165 166 2.197875 CCTAGTCCCCGTCCCGAT 59.802 66.667 0.00 0.00 0.00 4.18
166 167 2.201022 CCTAGTCCCCGTCCCGATG 61.201 68.421 0.00 0.00 0.00 3.84
167 168 2.836360 TAGTCCCCGTCCCGATGC 60.836 66.667 0.00 0.00 0.00 3.91
168 169 3.369410 TAGTCCCCGTCCCGATGCT 62.369 63.158 0.00 0.00 0.00 3.79
169 170 4.530857 GTCCCCGTCCCGATGCTG 62.531 72.222 0.00 0.00 0.00 4.41
171 172 4.838152 CCCCGTCCCGATGCTGTG 62.838 72.222 0.00 0.00 0.00 3.66
172 173 4.082523 CCCGTCCCGATGCTGTGT 62.083 66.667 0.00 0.00 0.00 3.72
173 174 2.509336 CCGTCCCGATGCTGTGTC 60.509 66.667 0.00 0.00 0.00 3.67
174 175 2.573869 CGTCCCGATGCTGTGTCT 59.426 61.111 0.00 0.00 0.00 3.41
175 176 1.663379 CCGTCCCGATGCTGTGTCTA 61.663 60.000 0.00 0.00 0.00 2.59
176 177 0.248661 CGTCCCGATGCTGTGTCTAG 60.249 60.000 0.00 0.00 0.00 2.43
177 178 0.528684 GTCCCGATGCTGTGTCTAGC 60.529 60.000 0.00 0.00 43.95 3.42
184 185 3.264666 GCTGTGTCTAGCATCCTCG 57.735 57.895 0.00 0.00 43.17 4.63
185 186 0.249238 GCTGTGTCTAGCATCCTCGG 60.249 60.000 0.00 0.00 43.17 4.63
186 187 1.393603 CTGTGTCTAGCATCCTCGGA 58.606 55.000 0.00 0.00 0.00 4.55
187 188 1.336440 CTGTGTCTAGCATCCTCGGAG 59.664 57.143 0.00 0.00 0.00 4.63
188 189 0.671251 GTGTCTAGCATCCTCGGAGG 59.329 60.000 18.25 18.25 36.46 4.30
189 190 0.468214 TGTCTAGCATCCTCGGAGGG 60.468 60.000 23.39 9.89 35.59 4.30
190 191 1.531840 TCTAGCATCCTCGGAGGGC 60.532 63.158 23.39 18.90 35.59 5.19
191 192 2.912542 TAGCATCCTCGGAGGGCG 60.913 66.667 23.39 15.35 35.59 6.13
192 193 3.733507 TAGCATCCTCGGAGGGCGT 62.734 63.158 23.39 11.77 35.59 5.68
193 194 4.899239 GCATCCTCGGAGGGCGTG 62.899 72.222 23.39 18.96 35.59 5.34
194 195 3.461773 CATCCTCGGAGGGCGTGT 61.462 66.667 23.39 3.00 35.59 4.49
195 196 3.461773 ATCCTCGGAGGGCGTGTG 61.462 66.667 23.39 0.00 35.59 3.82
198 199 4.135153 CTCGGAGGGCGTGTGGAG 62.135 72.222 0.00 0.00 0.00 3.86
201 202 4.394712 GGAGGGCGTGTGGAGGTG 62.395 72.222 0.00 0.00 0.00 4.00
202 203 3.626924 GAGGGCGTGTGGAGGTGT 61.627 66.667 0.00 0.00 0.00 4.16
203 204 3.883744 GAGGGCGTGTGGAGGTGTG 62.884 68.421 0.00 0.00 0.00 3.82
204 205 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
205 206 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
206 207 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
207 208 1.664965 GCGTGTGGAGGTGTGTCTC 60.665 63.158 0.00 0.00 0.00 3.36
212 213 4.436998 GGAGGTGTGTCTCCGGCG 62.437 72.222 0.00 0.00 43.19 6.46
213 214 4.436998 GAGGTGTGTCTCCGGCGG 62.437 72.222 22.51 22.51 0.00 6.13
214 215 4.988716 AGGTGTGTCTCCGGCGGA 62.989 66.667 29.14 29.14 0.00 5.54
215 216 3.771160 GGTGTGTCTCCGGCGGAT 61.771 66.667 31.23 0.00 0.00 4.18
216 217 2.202756 GTGTGTCTCCGGCGGATC 60.203 66.667 31.23 24.22 0.00 3.36
217 218 2.362503 TGTGTCTCCGGCGGATCT 60.363 61.111 31.23 0.00 0.00 2.75
218 219 2.413765 GTGTCTCCGGCGGATCTC 59.586 66.667 31.23 21.40 0.00 2.75
219 220 3.209812 TGTCTCCGGCGGATCTCG 61.210 66.667 31.23 18.07 42.76 4.04
228 229 2.429236 CGGATCTCGCGGGATTCG 60.429 66.667 33.25 33.25 38.18 3.34
229 230 2.049063 GGATCTCGCGGGATTCGG 60.049 66.667 24.71 0.00 39.69 4.30
230 231 2.728817 GATCTCGCGGGATTCGGT 59.271 61.111 24.71 0.00 39.69 4.69
231 232 1.371881 GATCTCGCGGGATTCGGTC 60.372 63.158 24.71 6.89 39.69 4.79
232 233 3.195591 ATCTCGCGGGATTCGGTCG 62.196 63.158 17.66 0.00 39.69 4.79
233 234 4.925576 CTCGCGGGATTCGGTCGG 62.926 72.222 0.00 0.00 39.69 4.79
237 238 3.766691 CGGGATTCGGTCGGTGGT 61.767 66.667 0.00 0.00 34.75 4.16
238 239 2.666812 GGGATTCGGTCGGTGGTT 59.333 61.111 0.00 0.00 0.00 3.67
239 240 1.743995 GGGATTCGGTCGGTGGTTG 60.744 63.158 0.00 0.00 0.00 3.77
240 241 1.004200 GGATTCGGTCGGTGGTTGT 60.004 57.895 0.00 0.00 0.00 3.32
241 242 0.604511 GGATTCGGTCGGTGGTTGTT 60.605 55.000 0.00 0.00 0.00 2.83
242 243 1.232119 GATTCGGTCGGTGGTTGTTT 58.768 50.000 0.00 0.00 0.00 2.83
243 244 1.605232 GATTCGGTCGGTGGTTGTTTT 59.395 47.619 0.00 0.00 0.00 2.43
244 245 1.461559 TTCGGTCGGTGGTTGTTTTT 58.538 45.000 0.00 0.00 0.00 1.94
245 246 2.322355 TCGGTCGGTGGTTGTTTTTA 57.678 45.000 0.00 0.00 0.00 1.52
246 247 2.211806 TCGGTCGGTGGTTGTTTTTAG 58.788 47.619 0.00 0.00 0.00 1.85
247 248 1.941975 CGGTCGGTGGTTGTTTTTAGT 59.058 47.619 0.00 0.00 0.00 2.24
248 249 2.286536 CGGTCGGTGGTTGTTTTTAGTG 60.287 50.000 0.00 0.00 0.00 2.74
249 250 2.033675 GGTCGGTGGTTGTTTTTAGTGG 59.966 50.000 0.00 0.00 0.00 4.00
250 251 2.944349 GTCGGTGGTTGTTTTTAGTGGA 59.056 45.455 0.00 0.00 0.00 4.02
251 252 3.566742 GTCGGTGGTTGTTTTTAGTGGAT 59.433 43.478 0.00 0.00 0.00 3.41
252 253 3.816523 TCGGTGGTTGTTTTTAGTGGATC 59.183 43.478 0.00 0.00 0.00 3.36
253 254 3.057806 CGGTGGTTGTTTTTAGTGGATCC 60.058 47.826 4.20 4.20 0.00 3.36
254 255 3.057806 GGTGGTTGTTTTTAGTGGATCCG 60.058 47.826 7.39 0.00 0.00 4.18
255 256 2.554893 TGGTTGTTTTTAGTGGATCCGC 59.445 45.455 18.01 18.01 0.00 5.54
256 257 2.817844 GGTTGTTTTTAGTGGATCCGCT 59.182 45.455 29.84 29.84 40.24 5.52
257 258 3.119955 GGTTGTTTTTAGTGGATCCGCTC 60.120 47.826 30.80 16.58 37.92 5.03
258 259 2.343101 TGTTTTTAGTGGATCCGCTCG 58.657 47.619 30.80 0.00 37.92 5.03
259 260 1.664151 GTTTTTAGTGGATCCGCTCGG 59.336 52.381 30.80 1.14 37.92 4.63
268 269 4.501285 TCCGCTCGGATCCGGTCT 62.501 66.667 32.79 0.00 44.63 3.85
269 270 3.528370 CCGCTCGGATCCGGTCTT 61.528 66.667 32.79 0.00 39.67 3.01
270 271 2.494918 CGCTCGGATCCGGTCTTT 59.505 61.111 32.79 0.00 40.25 2.52
271 272 1.878522 CGCTCGGATCCGGTCTTTG 60.879 63.158 32.79 16.58 40.25 2.77
272 273 1.218316 GCTCGGATCCGGTCTTTGT 59.782 57.895 32.79 0.00 40.25 2.83
273 274 0.391263 GCTCGGATCCGGTCTTTGTT 60.391 55.000 32.79 0.00 40.25 2.83
274 275 1.944430 GCTCGGATCCGGTCTTTGTTT 60.944 52.381 32.79 0.00 40.25 2.83
275 276 1.732259 CTCGGATCCGGTCTTTGTTTG 59.268 52.381 32.79 1.18 40.25 2.93
276 277 1.071071 TCGGATCCGGTCTTTGTTTGT 59.929 47.619 32.79 0.00 40.25 2.83
277 278 1.463444 CGGATCCGGTCTTTGTTTGTC 59.537 52.381 26.95 0.00 35.56 3.18
278 279 2.779506 GGATCCGGTCTTTGTTTGTCT 58.220 47.619 0.00 0.00 0.00 3.41
279 280 3.146847 GGATCCGGTCTTTGTTTGTCTT 58.853 45.455 0.00 0.00 0.00 3.01
280 281 3.568430 GGATCCGGTCTTTGTTTGTCTTT 59.432 43.478 0.00 0.00 0.00 2.52
281 282 4.537015 GATCCGGTCTTTGTTTGTCTTTG 58.463 43.478 0.00 0.00 0.00 2.77
282 283 3.349022 TCCGGTCTTTGTTTGTCTTTGT 58.651 40.909 0.00 0.00 0.00 2.83
283 284 3.759618 TCCGGTCTTTGTTTGTCTTTGTT 59.240 39.130 0.00 0.00 0.00 2.83
284 285 4.102649 CCGGTCTTTGTTTGTCTTTGTTC 58.897 43.478 0.00 0.00 0.00 3.18
285 286 4.380023 CCGGTCTTTGTTTGTCTTTGTTCA 60.380 41.667 0.00 0.00 0.00 3.18
286 287 5.339990 CGGTCTTTGTTTGTCTTTGTTCAT 58.660 37.500 0.00 0.00 0.00 2.57
287 288 5.229887 CGGTCTTTGTTTGTCTTTGTTCATG 59.770 40.000 0.00 0.00 0.00 3.07
288 289 5.005682 GGTCTTTGTTTGTCTTTGTTCATGC 59.994 40.000 0.00 0.00 0.00 4.06
289 290 4.797868 TCTTTGTTTGTCTTTGTTCATGCG 59.202 37.500 0.00 0.00 0.00 4.73
290 291 3.773860 TGTTTGTCTTTGTTCATGCGT 57.226 38.095 0.00 0.00 0.00 5.24
291 292 4.884458 TGTTTGTCTTTGTTCATGCGTA 57.116 36.364 0.00 0.00 0.00 4.42
292 293 5.431420 TGTTTGTCTTTGTTCATGCGTAT 57.569 34.783 0.00 0.00 0.00 3.06
293 294 5.826586 TGTTTGTCTTTGTTCATGCGTATT 58.173 33.333 0.00 0.00 0.00 1.89
294 295 5.912396 TGTTTGTCTTTGTTCATGCGTATTC 59.088 36.000 0.00 0.00 0.00 1.75
295 296 5.681337 TTGTCTTTGTTCATGCGTATTCA 57.319 34.783 0.00 0.00 0.00 2.57
296 297 5.281693 TGTCTTTGTTCATGCGTATTCAG 57.718 39.130 0.00 0.00 0.00 3.02
297 298 4.994217 TGTCTTTGTTCATGCGTATTCAGA 59.006 37.500 0.00 0.00 0.00 3.27
298 299 5.643348 TGTCTTTGTTCATGCGTATTCAGAT 59.357 36.000 0.00 0.00 0.00 2.90
299 300 6.149308 TGTCTTTGTTCATGCGTATTCAGATT 59.851 34.615 0.00 0.00 0.00 2.40
300 301 6.467047 GTCTTTGTTCATGCGTATTCAGATTG 59.533 38.462 0.00 0.00 0.00 2.67
301 302 5.878332 TTGTTCATGCGTATTCAGATTGT 57.122 34.783 0.00 0.00 0.00 2.71
302 303 6.976636 TTGTTCATGCGTATTCAGATTGTA 57.023 33.333 0.00 0.00 0.00 2.41
303 304 7.552458 TTGTTCATGCGTATTCAGATTGTAT 57.448 32.000 0.00 0.00 0.00 2.29
304 305 7.552458 TGTTCATGCGTATTCAGATTGTATT 57.448 32.000 0.00 0.00 0.00 1.89
305 306 8.655651 TGTTCATGCGTATTCAGATTGTATTA 57.344 30.769 0.00 0.00 0.00 0.98
306 307 9.271828 TGTTCATGCGTATTCAGATTGTATTAT 57.728 29.630 0.00 0.00 0.00 1.28
309 310 8.935844 TCATGCGTATTCAGATTGTATTATTCC 58.064 33.333 0.00 0.00 0.00 3.01
310 311 8.720562 CATGCGTATTCAGATTGTATTATTCCA 58.279 33.333 0.00 0.00 0.00 3.53
311 312 8.669946 TGCGTATTCAGATTGTATTATTCCAA 57.330 30.769 0.00 0.00 0.00 3.53
312 313 9.283768 TGCGTATTCAGATTGTATTATTCCAAT 57.716 29.630 0.00 0.00 34.11 3.16
331 332 8.662781 TTCCAATATAAACTTCTCTTCATCGG 57.337 34.615 0.00 0.00 0.00 4.18
332 333 7.217200 TCCAATATAAACTTCTCTTCATCGGG 58.783 38.462 0.00 0.00 0.00 5.14
333 334 7.070696 TCCAATATAAACTTCTCTTCATCGGGA 59.929 37.037 0.00 0.00 0.00 5.14
334 335 7.171678 CCAATATAAACTTCTCTTCATCGGGAC 59.828 40.741 0.00 0.00 0.00 4.46
349 350 2.484742 GGGACGGTTATTGTTCTGGT 57.515 50.000 0.00 0.00 0.00 4.00
350 351 2.081462 GGGACGGTTATTGTTCTGGTG 58.919 52.381 0.00 0.00 0.00 4.17
351 352 1.467342 GGACGGTTATTGTTCTGGTGC 59.533 52.381 0.00 0.00 0.00 5.01
352 353 1.127951 GACGGTTATTGTTCTGGTGCG 59.872 52.381 0.00 0.00 0.00 5.34
353 354 1.153353 CGGTTATTGTTCTGGTGCGT 58.847 50.000 0.00 0.00 0.00 5.24
354 355 1.533731 CGGTTATTGTTCTGGTGCGTT 59.466 47.619 0.00 0.00 0.00 4.84
355 356 2.664424 CGGTTATTGTTCTGGTGCGTTG 60.664 50.000 0.00 0.00 0.00 4.10
356 357 2.351350 GGTTATTGTTCTGGTGCGTTGG 60.351 50.000 0.00 0.00 0.00 3.77
357 358 2.264005 TATTGTTCTGGTGCGTTGGT 57.736 45.000 0.00 0.00 0.00 3.67
358 359 0.951558 ATTGTTCTGGTGCGTTGGTC 59.048 50.000 0.00 0.00 0.00 4.02
359 360 1.098712 TTGTTCTGGTGCGTTGGTCC 61.099 55.000 0.00 0.00 0.00 4.46
360 361 1.227853 GTTCTGGTGCGTTGGTCCT 60.228 57.895 0.00 0.00 0.00 3.85
361 362 0.034337 GTTCTGGTGCGTTGGTCCTA 59.966 55.000 0.00 0.00 0.00 2.94
362 363 0.981183 TTCTGGTGCGTTGGTCCTAT 59.019 50.000 0.00 0.00 0.00 2.57
363 364 0.249120 TCTGGTGCGTTGGTCCTATG 59.751 55.000 0.00 0.00 0.00 2.23
364 365 0.744414 CTGGTGCGTTGGTCCTATGG 60.744 60.000 0.00 0.00 0.00 2.74
365 366 1.451387 GGTGCGTTGGTCCTATGGG 60.451 63.158 0.00 0.00 0.00 4.00
366 367 1.451387 GTGCGTTGGTCCTATGGGG 60.451 63.158 0.00 0.00 0.00 4.96
367 368 2.516225 GCGTTGGTCCTATGGGGC 60.516 66.667 0.00 0.00 36.26 5.80
374 375 2.539983 GTCCTATGGGGCCTTAGCA 58.460 57.895 0.84 0.00 42.56 3.49
375 376 0.108774 GTCCTATGGGGCCTTAGCAC 59.891 60.000 0.84 0.00 43.97 4.40
376 377 1.071471 CCTATGGGGCCTTAGCACG 59.929 63.158 0.84 0.00 46.55 5.34
377 378 1.407656 CCTATGGGGCCTTAGCACGA 61.408 60.000 0.84 0.00 46.55 4.35
378 379 0.249911 CTATGGGGCCTTAGCACGAC 60.250 60.000 0.84 0.00 46.55 4.34
379 380 2.023414 TATGGGGCCTTAGCACGACG 62.023 60.000 0.84 0.00 46.55 5.12
380 381 3.766691 GGGGCCTTAGCACGACGA 61.767 66.667 0.84 0.00 46.55 4.20
381 382 2.508663 GGGCCTTAGCACGACGAC 60.509 66.667 0.84 0.00 42.56 4.34
382 383 2.572284 GGCCTTAGCACGACGACT 59.428 61.111 0.00 0.59 42.56 4.18
383 384 1.080025 GGCCTTAGCACGACGACTT 60.080 57.895 0.00 0.00 42.56 3.01
384 385 1.077089 GGCCTTAGCACGACGACTTC 61.077 60.000 0.00 0.00 42.56 3.01
385 386 1.077089 GCCTTAGCACGACGACTTCC 61.077 60.000 0.00 0.00 39.53 3.46
386 387 0.526662 CCTTAGCACGACGACTTCCT 59.473 55.000 0.00 0.00 0.00 3.36
387 388 1.618861 CTTAGCACGACGACTTCCTG 58.381 55.000 0.00 0.00 0.00 3.86
388 389 1.199327 CTTAGCACGACGACTTCCTGA 59.801 52.381 0.00 0.00 0.00 3.86
389 390 0.520404 TAGCACGACGACTTCCTGAC 59.480 55.000 0.00 0.00 0.00 3.51
390 391 1.173444 AGCACGACGACTTCCTGACT 61.173 55.000 0.00 0.00 0.00 3.41
391 392 1.004277 GCACGACGACTTCCTGACTG 61.004 60.000 0.00 0.00 0.00 3.51
392 393 0.311165 CACGACGACTTCCTGACTGT 59.689 55.000 0.00 0.00 0.00 3.55
393 394 1.030457 ACGACGACTTCCTGACTGTT 58.970 50.000 0.00 0.00 0.00 3.16
394 395 1.407979 ACGACGACTTCCTGACTGTTT 59.592 47.619 0.00 0.00 0.00 2.83
395 396 2.620115 ACGACGACTTCCTGACTGTTTA 59.380 45.455 0.00 0.00 0.00 2.01
396 397 2.978489 CGACGACTTCCTGACTGTTTAC 59.022 50.000 0.00 0.00 0.00 2.01
397 398 3.304525 CGACGACTTCCTGACTGTTTACT 60.305 47.826 0.00 0.00 0.00 2.24
398 399 4.083643 CGACGACTTCCTGACTGTTTACTA 60.084 45.833 0.00 0.00 0.00 1.82
399 400 5.118642 ACGACTTCCTGACTGTTTACTAC 57.881 43.478 0.00 0.00 0.00 2.73
400 401 4.581824 ACGACTTCCTGACTGTTTACTACA 59.418 41.667 0.00 0.00 34.95 2.74
401 402 5.068198 ACGACTTCCTGACTGTTTACTACAA 59.932 40.000 0.00 0.00 36.02 2.41
402 403 5.401674 CGACTTCCTGACTGTTTACTACAAC 59.598 44.000 0.00 0.00 36.02 3.32
403 404 6.229936 ACTTCCTGACTGTTTACTACAACA 57.770 37.500 0.00 0.00 36.02 3.33
404 405 6.646267 ACTTCCTGACTGTTTACTACAACAA 58.354 36.000 0.00 0.00 36.22 2.83
405 406 7.280356 ACTTCCTGACTGTTTACTACAACAAT 58.720 34.615 0.00 0.00 36.22 2.71
406 407 7.773690 ACTTCCTGACTGTTTACTACAACAATT 59.226 33.333 0.00 0.00 36.22 2.32
407 408 8.514330 TTCCTGACTGTTTACTACAACAATTT 57.486 30.769 0.00 0.00 36.22 1.82
408 409 7.925993 TCCTGACTGTTTACTACAACAATTTG 58.074 34.615 0.00 0.00 36.22 2.32
410 411 7.643764 CCTGACTGTTTACTACAACAATTTGTG 59.356 37.037 2.13 0.60 45.91 3.33
411 412 6.970043 TGACTGTTTACTACAACAATTTGTGC 59.030 34.615 2.13 0.00 45.91 4.57
412 413 6.270064 ACTGTTTACTACAACAATTTGTGCC 58.730 36.000 2.13 0.00 45.91 5.01
413 414 6.127591 ACTGTTTACTACAACAATTTGTGCCA 60.128 34.615 2.13 0.00 45.91 4.92
414 415 6.269315 TGTTTACTACAACAATTTGTGCCAG 58.731 36.000 2.13 3.32 45.91 4.85
415 416 3.369546 ACTACAACAATTTGTGCCAGC 57.630 42.857 2.13 0.00 45.91 4.85
416 417 2.958355 ACTACAACAATTTGTGCCAGCT 59.042 40.909 2.13 0.00 45.91 4.24
417 418 2.514205 ACAACAATTTGTGCCAGCTC 57.486 45.000 2.13 0.00 44.66 4.09
418 419 1.069049 ACAACAATTTGTGCCAGCTCC 59.931 47.619 2.13 0.00 44.66 4.70
419 420 0.314935 AACAATTTGTGCCAGCTCCG 59.685 50.000 2.13 0.00 0.00 4.63
420 421 1.213537 CAATTTGTGCCAGCTCCGG 59.786 57.895 0.00 0.00 0.00 5.14
432 433 4.785453 CTCCGGCAAGGGAGTGGC 62.785 72.222 0.00 0.00 46.97 5.01
436 437 2.825836 GGCAAGGGAGTGGCGATG 60.826 66.667 0.00 0.00 34.03 3.84
437 438 2.268920 GCAAGGGAGTGGCGATGA 59.731 61.111 0.00 0.00 0.00 2.92
438 439 2.109126 GCAAGGGAGTGGCGATGAC 61.109 63.158 0.00 0.00 0.00 3.06
439 440 1.811266 CAAGGGAGTGGCGATGACG 60.811 63.158 0.00 0.00 42.93 4.35
440 441 3.019003 AAGGGAGTGGCGATGACGG 62.019 63.158 0.00 0.00 40.15 4.79
449 450 2.354188 CGATGACGGCGGCGATTA 60.354 61.111 38.93 22.36 35.72 1.75
450 451 1.947146 CGATGACGGCGGCGATTAA 60.947 57.895 38.93 19.33 35.72 1.40
451 452 1.282248 CGATGACGGCGGCGATTAAT 61.282 55.000 38.93 22.98 35.72 1.40
452 453 1.705256 GATGACGGCGGCGATTAATA 58.295 50.000 38.93 16.24 0.00 0.98
453 454 2.268298 GATGACGGCGGCGATTAATAT 58.732 47.619 38.93 19.96 0.00 1.28
454 455 2.157834 TGACGGCGGCGATTAATATT 57.842 45.000 38.93 13.14 0.00 1.28
455 456 3.300852 TGACGGCGGCGATTAATATTA 57.699 42.857 38.93 7.38 0.00 0.98
456 457 3.247442 TGACGGCGGCGATTAATATTAG 58.753 45.455 38.93 4.25 0.00 1.73
457 458 3.248266 GACGGCGGCGATTAATATTAGT 58.752 45.455 38.93 10.79 0.00 2.24
458 459 2.991190 ACGGCGGCGATTAATATTAGTG 59.009 45.455 38.93 3.52 0.00 2.74
459 460 2.222729 CGGCGGCGATTAATATTAGTGC 60.223 50.000 29.19 1.86 0.00 4.40
460 461 2.095372 GGCGGCGATTAATATTAGTGCC 59.905 50.000 12.98 17.95 37.66 5.01
461 462 2.739913 GCGGCGATTAATATTAGTGCCA 59.260 45.455 23.32 2.11 41.01 4.92
462 463 3.374058 GCGGCGATTAATATTAGTGCCAT 59.626 43.478 23.32 6.08 41.01 4.40
463 464 4.142687 GCGGCGATTAATATTAGTGCCATT 60.143 41.667 23.32 0.00 41.01 3.16
464 465 5.619086 GCGGCGATTAATATTAGTGCCATTT 60.619 40.000 23.32 0.00 41.01 2.32
465 466 5.794945 CGGCGATTAATATTAGTGCCATTTG 59.205 40.000 23.32 11.21 41.01 2.32
466 467 6.348132 CGGCGATTAATATTAGTGCCATTTGA 60.348 38.462 23.32 0.00 41.01 2.69
467 468 7.367285 GGCGATTAATATTAGTGCCATTTGAA 58.633 34.615 20.87 0.00 40.66 2.69
468 469 7.865385 GGCGATTAATATTAGTGCCATTTGAAA 59.135 33.333 20.87 0.00 40.66 2.69
469 470 8.690840 GCGATTAATATTAGTGCCATTTGAAAC 58.309 33.333 0.00 0.00 0.00 2.78
470 471 9.729023 CGATTAATATTAGTGCCATTTGAAACA 57.271 29.630 0.00 0.00 0.00 2.83
475 476 9.995003 AATATTAGTGCCATTTGAAACAAAAGA 57.005 25.926 0.00 0.00 0.00 2.52
476 477 9.995003 ATATTAGTGCCATTTGAAACAAAAGAA 57.005 25.926 0.00 0.00 0.00 2.52
477 478 8.729805 ATTAGTGCCATTTGAAACAAAAGAAA 57.270 26.923 0.00 0.00 0.00 2.52
478 479 6.421377 AGTGCCATTTGAAACAAAAGAAAC 57.579 33.333 0.00 0.00 0.00 2.78
479 480 5.063312 AGTGCCATTTGAAACAAAAGAAACG 59.937 36.000 0.00 0.00 0.00 3.60
480 481 5.062809 GTGCCATTTGAAACAAAAGAAACGA 59.937 36.000 0.00 0.00 0.00 3.85
481 482 5.290643 TGCCATTTGAAACAAAAGAAACGAG 59.709 36.000 0.00 0.00 0.00 4.18
482 483 5.290885 GCCATTTGAAACAAAAGAAACGAGT 59.709 36.000 0.00 0.00 0.00 4.18
483 484 6.695245 CCATTTGAAACAAAAGAAACGAGTG 58.305 36.000 0.00 0.00 0.00 3.51
484 485 6.237808 CCATTTGAAACAAAAGAAACGAGTGG 60.238 38.462 0.00 0.00 0.00 4.00
485 486 5.379732 TTGAAACAAAAGAAACGAGTGGT 57.620 34.783 0.00 0.00 0.00 4.16
486 487 6.497785 TTGAAACAAAAGAAACGAGTGGTA 57.502 33.333 0.00 0.00 0.00 3.25
487 488 6.114221 TGAAACAAAAGAAACGAGTGGTAG 57.886 37.500 0.00 0.00 0.00 3.18
488 489 5.644636 TGAAACAAAAGAAACGAGTGGTAGT 59.355 36.000 0.00 0.00 0.00 2.73
489 490 6.817641 TGAAACAAAAGAAACGAGTGGTAGTA 59.182 34.615 0.00 0.00 0.00 1.82
490 491 6.594284 AACAAAAGAAACGAGTGGTAGTAC 57.406 37.500 0.00 0.00 0.00 2.73
491 492 5.910614 ACAAAAGAAACGAGTGGTAGTACT 58.089 37.500 0.00 0.00 0.00 2.73
492 493 7.042797 ACAAAAGAAACGAGTGGTAGTACTA 57.957 36.000 0.00 0.00 0.00 1.82
493 494 7.664758 ACAAAAGAAACGAGTGGTAGTACTAT 58.335 34.615 5.75 0.00 0.00 2.12
494 495 8.796475 ACAAAAGAAACGAGTGGTAGTACTATA 58.204 33.333 5.75 0.00 0.00 1.31
495 496 9.070149 CAAAAGAAACGAGTGGTAGTACTATAC 57.930 37.037 5.75 8.75 0.00 1.47
496 497 6.934048 AGAAACGAGTGGTAGTACTATACC 57.066 41.667 5.75 6.88 44.73 2.73
529 530 7.759465 AGATGAAATGTCTTCAATGCTTGTAG 58.241 34.615 1.89 0.00 31.75 2.74
531 532 6.902341 TGAAATGTCTTCAATGCTTGTAGTC 58.098 36.000 0.00 0.00 31.00 2.59
532 533 5.536554 AATGTCTTCAATGCTTGTAGTCG 57.463 39.130 0.00 0.00 31.00 4.18
549 550 3.097614 AGTCGTTGCTAGGTGGTCTATT 58.902 45.455 0.00 0.00 0.00 1.73
553 554 6.548622 AGTCGTTGCTAGGTGGTCTATTAATA 59.451 38.462 0.00 0.00 0.00 0.98
555 556 7.328737 GTCGTTGCTAGGTGGTCTATTAATATG 59.671 40.741 0.00 0.00 0.00 1.78
560 561 7.457852 TGCTAGGTGGTCTATTAATATGGATGT 59.542 37.037 0.00 0.00 0.00 3.06
563 564 8.974292 AGGTGGTCTATTAATATGGATGTAGT 57.026 34.615 0.00 0.00 0.00 2.73
594 595 3.512033 TTTGGTGTTTGTTGTACTGCC 57.488 42.857 0.00 0.00 0.00 4.85
602 603 4.236935 GTTTGTTGTACTGCCATGATTGG 58.763 43.478 0.00 0.00 46.66 3.16
604 605 3.346315 TGTTGTACTGCCATGATTGGAG 58.654 45.455 0.00 0.00 46.92 3.86
618 619 6.534436 CCATGATTGGAGATGAATAGATCGAC 59.466 42.308 0.00 0.00 46.92 4.20
626 627 5.524284 AGATGAATAGATCGACAGTTTCCG 58.476 41.667 0.00 0.00 0.00 4.30
633 634 3.746492 AGATCGACAGTTTCCGGAAAAAG 59.254 43.478 30.49 25.45 31.33 2.27
638 639 5.066764 TCGACAGTTTCCGGAAAAAGAAAAT 59.933 36.000 30.49 12.22 33.98 1.82
639 640 5.746721 CGACAGTTTCCGGAAAAAGAAAATT 59.253 36.000 30.49 9.91 33.98 1.82
650 653 5.105877 GGAAAAAGAAAATTCCTAGTCCCCG 60.106 44.000 0.00 0.00 41.54 5.73
695 698 6.554334 TTTCCTCATTTTGAACGGTTCTAG 57.446 37.500 20.53 8.90 0.00 2.43
699 702 6.768861 TCCTCATTTTGAACGGTTCTAGAAAA 59.231 34.615 20.53 17.66 0.00 2.29
712 715 4.785511 TCTAGAAAAGGACAGAGGTTCG 57.214 45.455 0.00 0.00 0.00 3.95
717 720 4.575236 AGAAAAGGACAGAGGTTCGAAAAC 59.425 41.667 0.00 0.00 34.46 2.43
727 730 7.320399 ACAGAGGTTCGAAAACAAAGATTTTT 58.680 30.769 0.00 0.00 37.10 1.94
728 731 7.488150 ACAGAGGTTCGAAAACAAAGATTTTTC 59.512 33.333 0.00 0.00 38.88 2.29
799 802 4.460683 GCACATGGCCCGTACGGA 62.461 66.667 35.41 16.61 37.50 4.69
800 803 2.504032 CACATGGCCCGTACGGAT 59.496 61.111 35.41 18.26 37.50 4.18
801 804 1.153249 CACATGGCCCGTACGGATT 60.153 57.895 35.41 13.63 37.50 3.01
802 805 0.105224 CACATGGCCCGTACGGATTA 59.895 55.000 35.41 19.82 37.50 1.75
803 806 0.105408 ACATGGCCCGTACGGATTAC 59.895 55.000 35.41 20.65 37.50 1.89
804 807 0.105224 CATGGCCCGTACGGATTACA 59.895 55.000 35.41 25.09 37.50 2.41
805 808 0.831966 ATGGCCCGTACGGATTACAA 59.168 50.000 35.41 15.24 37.50 2.41
806 809 0.108233 TGGCCCGTACGGATTACAAC 60.108 55.000 35.41 15.98 37.50 3.32
807 810 0.811219 GGCCCGTACGGATTACAACC 60.811 60.000 35.41 18.77 37.50 3.77
816 819 1.660167 GGATTACAACCGTGTAGGCC 58.340 55.000 0.00 0.00 46.52 5.19
1156 1163 8.383947 GCCCAATCTACCTAGGTAATAAGAATT 58.616 37.037 22.00 11.64 0.00 2.17
1219 1227 1.883275 AGGATGGACATCGATCGAGTC 59.117 52.381 26.17 26.17 38.69 3.36
1262 1270 3.371168 GCATTTTGTCGAACAGCTGAAA 58.629 40.909 23.35 8.89 0.00 2.69
1305 1317 0.782384 GTCGAACAGTTAGTGCCGTG 59.218 55.000 0.00 0.00 0.00 4.94
1313 1325 2.933401 TTAGTGCCGTGCTGCCGTA 61.933 57.895 0.00 0.00 0.00 4.02
1331 1343 3.244156 CGTATGTAGTTGTAACCGTGCA 58.756 45.455 0.00 0.00 0.00 4.57
1332 1344 3.059834 CGTATGTAGTTGTAACCGTGCAC 59.940 47.826 6.82 6.82 0.00 4.57
1347 1359 5.387279 ACCGTGCACGATTGTATTTTAAAG 58.613 37.500 39.10 19.28 43.02 1.85
1348 1360 4.262045 CCGTGCACGATTGTATTTTAAAGC 59.738 41.667 39.10 0.00 43.02 3.51
1349 1361 4.029625 CGTGCACGATTGTATTTTAAAGCG 60.030 41.667 34.93 0.00 43.02 4.68
1351 1363 5.737290 GTGCACGATTGTATTTTAAAGCGAT 59.263 36.000 0.00 0.00 37.37 4.58
1352 1364 6.250527 GTGCACGATTGTATTTTAAAGCGATT 59.749 34.615 0.00 0.00 37.37 3.34
1353 1365 7.427030 GTGCACGATTGTATTTTAAAGCGATTA 59.573 33.333 0.00 0.00 37.37 1.75
1355 1367 8.461398 GCACGATTGTATTTTAAAGCGATTAAG 58.539 33.333 0.00 0.00 37.37 1.85
1356 1368 8.943925 CACGATTGTATTTTAAAGCGATTAAGG 58.056 33.333 0.00 0.00 37.37 2.69
1358 1370 7.642194 CGATTGTATTTTAAAGCGATTAAGGCA 59.358 33.333 4.36 0.00 37.37 4.75
1359 1371 9.463443 GATTGTATTTTAAAGCGATTAAGGCAT 57.537 29.630 4.36 0.00 35.03 4.40
1360 1372 9.816354 ATTGTATTTTAAAGCGATTAAGGCATT 57.184 25.926 4.36 0.00 35.03 3.56
1361 1373 9.646427 TTGTATTTTAAAGCGATTAAGGCATTT 57.354 25.926 0.00 4.77 35.03 2.32
1394 1406 1.732259 CGATTAAGGCACACACCAGAC 59.268 52.381 0.00 0.00 0.00 3.51
1508 1520 2.154798 TACTGACTGTGCTCCGTGCC 62.155 60.000 0.00 0.00 42.00 5.01
1510 1522 2.280797 GACTGTGCTCCGTGCCAA 60.281 61.111 0.00 0.00 42.00 4.52
1854 1866 2.222027 GGATAGGTACACATTGCAGCC 58.778 52.381 0.00 0.00 0.00 4.85
1891 1903 6.259550 AGCCATGTAAACTTTCTGTTGATC 57.740 37.500 0.00 0.00 39.13 2.92
1893 1905 7.168219 AGCCATGTAAACTTTCTGTTGATCTA 58.832 34.615 0.00 0.00 39.13 1.98
1894 1906 7.831193 AGCCATGTAAACTTTCTGTTGATCTAT 59.169 33.333 0.00 0.00 39.13 1.98
1895 1907 9.109393 GCCATGTAAACTTTCTGTTGATCTATA 57.891 33.333 0.00 0.00 39.13 1.31
2032 2056 5.465056 GCCTGCATAGAAATCAGACTAAGAC 59.535 44.000 0.00 0.00 0.00 3.01
2035 2059 8.417106 CCTGCATAGAAATCAGACTAAGACTAA 58.583 37.037 0.00 0.00 0.00 2.24
2063 2546 5.727434 AGGCAATTTCTTAAATTCCTGCAG 58.273 37.500 6.78 6.78 38.97 4.41
2133 2616 5.584649 ACCGTGTTCCTTTACATACATCATG 59.415 40.000 0.00 0.00 40.78 3.07
2145 2628 0.971959 ACATCATGTGCCCCGCAAAT 60.972 50.000 0.00 0.00 41.47 2.32
2489 2973 1.880027 GTTGCCTACCAGTGGACAAAG 59.120 52.381 18.40 7.35 0.00 2.77
2582 3066 5.670485 TGAAATATCACAAGTACAGCCGAT 58.330 37.500 0.00 0.00 0.00 4.18
2853 3337 9.733556 TTGTGTAATGGACATTATAAACACTCT 57.266 29.630 20.54 0.00 41.14 3.24
3049 3533 3.056607 AGTGTGGCCTTAAAATGATGTGC 60.057 43.478 3.32 0.00 0.00 4.57
3073 3671 8.042515 TGCCTTACCTATTTAACGAGTACAATT 58.957 33.333 0.00 0.00 0.00 2.32
3125 3729 2.353208 GGGCGGTTATTGTTGCAAATCA 60.353 45.455 0.00 0.00 0.00 2.57
3150 3758 6.548441 TTTCTTGTACGGAATGGTTTACAG 57.452 37.500 2.66 0.00 0.00 2.74
3508 4116 6.471519 GCTTTCTGCATGATATTCTCAACAAC 59.528 38.462 0.00 0.00 42.31 3.32
3604 4214 7.608308 ATTTTGAAGCTTGATGTCTCTACTC 57.392 36.000 2.10 0.00 0.00 2.59
3613 4223 4.329392 TGATGTCTCTACTCGGTACAACA 58.671 43.478 0.00 0.00 0.00 3.33
3699 4312 8.514594 CAAAAGATGATGTTGTAGGAGCTAAAA 58.485 33.333 0.00 0.00 0.00 1.52
3750 4363 4.195334 CCCCCAAGATGCCTCCCG 62.195 72.222 0.00 0.00 0.00 5.14
3919 4533 1.053264 TTGCATGGCAAAACCCCACT 61.053 50.000 0.41 0.00 45.96 4.00
3930 4544 3.261818 AAACCCCACTAGTCAGTCTCT 57.738 47.619 0.00 0.00 30.46 3.10
3931 4545 3.261818 AACCCCACTAGTCAGTCTCTT 57.738 47.619 0.00 0.00 30.46 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.510411 CGCACATCCATGGCCCTA 59.490 61.111 6.96 0.00 0.00 3.53
1 2 4.511246 CCGCACATCCATGGCCCT 62.511 66.667 6.96 0.00 0.00 5.19
2 3 4.820744 ACCGCACATCCATGGCCC 62.821 66.667 6.96 0.00 0.00 5.80
3 4 3.520862 CACCGCACATCCATGGCC 61.521 66.667 6.96 0.00 0.00 5.36
4 5 3.520862 CCACCGCACATCCATGGC 61.521 66.667 6.96 0.00 0.00 4.40
5 6 1.152902 ATCCACCGCACATCCATGG 60.153 57.895 4.97 4.97 0.00 3.66
6 7 1.168407 GGATCCACCGCACATCCATG 61.168 60.000 6.95 0.00 36.78 3.66
7 8 1.149174 GGATCCACCGCACATCCAT 59.851 57.895 6.95 0.00 36.78 3.41
8 9 1.995066 AGGATCCACCGCACATCCA 60.995 57.895 15.82 0.00 44.74 3.41
9 10 1.524621 CAGGATCCACCGCACATCC 60.525 63.158 15.82 0.00 44.74 3.51
10 11 0.811616 GACAGGATCCACCGCACATC 60.812 60.000 15.82 0.00 44.74 3.06
11 12 1.221840 GACAGGATCCACCGCACAT 59.778 57.895 15.82 0.00 44.74 3.21
12 13 2.662596 GACAGGATCCACCGCACA 59.337 61.111 15.82 0.00 44.74 4.57
21 22 2.190578 CCGGCAAGGGACAGGATC 59.809 66.667 0.00 0.00 35.97 3.36
22 23 4.115199 GCCGGCAAGGGACAGGAT 62.115 66.667 24.80 0.00 41.48 3.24
40 41 1.674651 GTGAAAACGGAGCCCTCCC 60.675 63.158 8.68 0.00 46.96 4.30
41 42 2.033194 CGTGAAAACGGAGCCCTCC 61.033 63.158 4.19 4.19 46.18 4.30
42 43 1.301479 ACGTGAAAACGGAGCCCTC 60.301 57.895 3.09 0.00 37.45 4.30
43 44 1.597027 CACGTGAAAACGGAGCCCT 60.597 57.895 10.90 0.00 37.45 5.19
44 45 2.943653 CACGTGAAAACGGAGCCC 59.056 61.111 10.90 0.00 37.45 5.19
45 46 1.782028 AAGCACGTGAAAACGGAGCC 61.782 55.000 22.23 0.00 38.42 4.70
46 47 0.384353 GAAGCACGTGAAAACGGAGC 60.384 55.000 22.23 0.00 38.11 4.70
47 48 1.217882 AGAAGCACGTGAAAACGGAG 58.782 50.000 22.23 0.00 37.45 4.63
48 49 1.595794 GAAGAAGCACGTGAAAACGGA 59.404 47.619 22.23 0.00 37.45 4.69
49 50 1.329292 TGAAGAAGCACGTGAAAACGG 59.671 47.619 22.23 0.00 37.45 4.44
50 51 2.730183 TGAAGAAGCACGTGAAAACG 57.270 45.000 22.23 0.00 39.31 3.60
51 52 4.016113 ACTTGAAGAAGCACGTGAAAAC 57.984 40.909 22.23 7.04 31.68 2.43
52 53 4.695217 AACTTGAAGAAGCACGTGAAAA 57.305 36.364 22.23 1.03 31.68 2.29
53 54 4.695217 AAACTTGAAGAAGCACGTGAAA 57.305 36.364 22.23 0.31 31.68 2.69
54 55 4.695217 AAAACTTGAAGAAGCACGTGAA 57.305 36.364 22.23 1.09 31.68 3.18
55 56 4.695217 AAAAACTTGAAGAAGCACGTGA 57.305 36.364 22.23 0.00 31.68 4.35
74 75 5.636123 TGAGCAGGACATAAACCCTAAAAA 58.364 37.500 0.00 0.00 0.00 1.94
75 76 5.249780 TGAGCAGGACATAAACCCTAAAA 57.750 39.130 0.00 0.00 0.00 1.52
76 77 4.919774 TGAGCAGGACATAAACCCTAAA 57.080 40.909 0.00 0.00 0.00 1.85
77 78 4.534500 TCTTGAGCAGGACATAAACCCTAA 59.466 41.667 0.00 0.00 0.00 2.69
78 79 4.101114 TCTTGAGCAGGACATAAACCCTA 58.899 43.478 0.00 0.00 0.00 3.53
79 80 2.912956 TCTTGAGCAGGACATAAACCCT 59.087 45.455 0.00 0.00 0.00 4.34
80 81 3.350219 TCTTGAGCAGGACATAAACCC 57.650 47.619 0.00 0.00 0.00 4.11
81 82 4.393371 GTCTTCTTGAGCAGGACATAAACC 59.607 45.833 0.00 0.00 0.00 3.27
82 83 4.092091 CGTCTTCTTGAGCAGGACATAAAC 59.908 45.833 0.00 0.00 0.00 2.01
83 84 4.021456 TCGTCTTCTTGAGCAGGACATAAA 60.021 41.667 0.00 0.00 0.00 1.40
84 85 3.509967 TCGTCTTCTTGAGCAGGACATAA 59.490 43.478 0.00 0.00 0.00 1.90
85 86 3.089284 TCGTCTTCTTGAGCAGGACATA 58.911 45.455 0.00 0.00 0.00 2.29
86 87 1.895798 TCGTCTTCTTGAGCAGGACAT 59.104 47.619 0.00 0.00 0.00 3.06
87 88 1.270826 CTCGTCTTCTTGAGCAGGACA 59.729 52.381 0.00 0.00 0.00 4.02
88 89 1.542030 TCTCGTCTTCTTGAGCAGGAC 59.458 52.381 0.00 0.00 32.20 3.85
89 90 1.911057 TCTCGTCTTCTTGAGCAGGA 58.089 50.000 0.00 0.00 32.20 3.86
90 91 2.165234 TCATCTCGTCTTCTTGAGCAGG 59.835 50.000 0.00 0.00 32.20 4.85
91 92 3.178267 GTCATCTCGTCTTCTTGAGCAG 58.822 50.000 0.00 0.00 32.20 4.24
92 93 2.414691 CGTCATCTCGTCTTCTTGAGCA 60.415 50.000 0.00 0.00 32.20 4.26
93 94 2.159503 TCGTCATCTCGTCTTCTTGAGC 60.160 50.000 0.00 0.00 32.20 4.26
94 95 3.421741 GTCGTCATCTCGTCTTCTTGAG 58.578 50.000 0.00 0.00 0.00 3.02
95 96 2.159693 CGTCGTCATCTCGTCTTCTTGA 60.160 50.000 0.00 0.00 0.00 3.02
96 97 2.159693 TCGTCGTCATCTCGTCTTCTTG 60.160 50.000 0.00 0.00 0.00 3.02
97 98 2.074576 TCGTCGTCATCTCGTCTTCTT 58.925 47.619 0.00 0.00 0.00 2.52
98 99 1.394227 GTCGTCGTCATCTCGTCTTCT 59.606 52.381 0.00 0.00 0.00 2.85
99 100 1.394227 AGTCGTCGTCATCTCGTCTTC 59.606 52.381 0.00 0.00 0.00 2.87
100 101 1.440708 AGTCGTCGTCATCTCGTCTT 58.559 50.000 0.00 0.00 0.00 3.01
101 102 1.394227 GAAGTCGTCGTCATCTCGTCT 59.606 52.381 0.00 0.00 0.00 4.18
102 103 1.394227 AGAAGTCGTCGTCATCTCGTC 59.606 52.381 0.00 0.00 0.00 4.20
103 104 1.440708 AGAAGTCGTCGTCATCTCGT 58.559 50.000 0.00 0.00 0.00 4.18
104 105 2.159693 TCAAGAAGTCGTCGTCATCTCG 60.160 50.000 0.00 0.00 0.00 4.04
105 106 3.473093 TCAAGAAGTCGTCGTCATCTC 57.527 47.619 0.00 0.00 0.00 2.75
106 107 3.502595 TCTTCAAGAAGTCGTCGTCATCT 59.497 43.478 9.44 0.00 39.38 2.90
107 108 3.822996 TCTTCAAGAAGTCGTCGTCATC 58.177 45.455 9.44 0.00 39.38 2.92
108 109 3.917329 TCTTCAAGAAGTCGTCGTCAT 57.083 42.857 9.44 0.00 39.38 3.06
109 110 3.565516 CATCTTCAAGAAGTCGTCGTCA 58.434 45.455 9.44 0.00 39.38 4.35
110 111 2.917971 CCATCTTCAAGAAGTCGTCGTC 59.082 50.000 9.44 0.00 39.38 4.20
111 112 2.557056 TCCATCTTCAAGAAGTCGTCGT 59.443 45.455 9.44 0.00 39.38 4.34
112 113 3.217599 TCCATCTTCAAGAAGTCGTCG 57.782 47.619 9.44 0.00 39.38 5.12
113 114 6.256757 CCTTATTCCATCTTCAAGAAGTCGTC 59.743 42.308 9.44 0.00 39.38 4.20
114 115 6.109359 CCTTATTCCATCTTCAAGAAGTCGT 58.891 40.000 9.44 0.00 39.38 4.34
115 116 6.109359 ACCTTATTCCATCTTCAAGAAGTCG 58.891 40.000 9.44 2.80 39.38 4.18
116 117 7.826744 AGAACCTTATTCCATCTTCAAGAAGTC 59.173 37.037 9.44 0.00 39.38 3.01
117 118 7.694093 AGAACCTTATTCCATCTTCAAGAAGT 58.306 34.615 9.44 0.00 39.38 3.01
118 119 7.281999 GGAGAACCTTATTCCATCTTCAAGAAG 59.718 40.741 3.43 3.43 39.71 2.85
119 120 7.112779 GGAGAACCTTATTCCATCTTCAAGAA 58.887 38.462 0.00 0.00 0.00 2.52
120 121 6.353082 GGGAGAACCTTATTCCATCTTCAAGA 60.353 42.308 0.00 0.00 35.85 3.02
121 122 5.825151 GGGAGAACCTTATTCCATCTTCAAG 59.175 44.000 0.00 0.00 35.85 3.02
122 123 5.340027 GGGGAGAACCTTATTCCATCTTCAA 60.340 44.000 0.00 0.00 40.03 2.69
123 124 4.166144 GGGGAGAACCTTATTCCATCTTCA 59.834 45.833 0.00 0.00 40.03 3.02
124 125 4.166144 TGGGGAGAACCTTATTCCATCTTC 59.834 45.833 0.00 0.00 40.03 2.87
125 126 4.079730 GTGGGGAGAACCTTATTCCATCTT 60.080 45.833 0.00 0.00 40.03 2.40
126 127 3.459969 GTGGGGAGAACCTTATTCCATCT 59.540 47.826 0.00 0.00 40.03 2.90
127 128 3.435169 GGTGGGGAGAACCTTATTCCATC 60.435 52.174 0.00 0.00 40.03 3.51
128 129 2.514160 GGTGGGGAGAACCTTATTCCAT 59.486 50.000 0.00 0.00 40.03 3.41
129 130 1.920351 GGTGGGGAGAACCTTATTCCA 59.080 52.381 0.00 0.00 40.03 3.53
130 131 2.206223 AGGTGGGGAGAACCTTATTCC 58.794 52.381 0.00 0.00 46.14 3.01
131 132 4.038633 ACTAGGTGGGGAGAACCTTATTC 58.961 47.826 0.00 0.00 46.14 1.75
132 133 4.038633 GACTAGGTGGGGAGAACCTTATT 58.961 47.826 0.00 0.00 46.14 1.40
133 134 3.632906 GGACTAGGTGGGGAGAACCTTAT 60.633 52.174 0.00 0.00 46.14 1.73
134 135 2.292719 GGACTAGGTGGGGAGAACCTTA 60.293 54.545 0.00 0.00 46.14 2.69
135 136 1.555058 GGACTAGGTGGGGAGAACCTT 60.555 57.143 0.00 0.00 46.14 3.50
137 138 0.981801 GGGACTAGGTGGGGAGAACC 60.982 65.000 0.00 0.00 38.03 3.62
138 139 0.981801 GGGGACTAGGTGGGGAGAAC 60.982 65.000 0.00 0.00 0.00 3.01
139 140 1.394963 GGGGACTAGGTGGGGAGAA 59.605 63.158 0.00 0.00 0.00 2.87
140 141 3.005148 CGGGGACTAGGTGGGGAGA 62.005 68.421 0.00 0.00 0.00 3.71
141 142 2.444140 CGGGGACTAGGTGGGGAG 60.444 72.222 0.00 0.00 0.00 4.30
142 143 3.278519 ACGGGGACTAGGTGGGGA 61.279 66.667 0.00 0.00 0.00 4.81
143 144 2.762875 GACGGGGACTAGGTGGGG 60.763 72.222 0.00 0.00 0.00 4.96
144 145 2.762875 GGACGGGGACTAGGTGGG 60.763 72.222 0.00 0.00 0.00 4.61
145 146 2.762875 GGGACGGGGACTAGGTGG 60.763 72.222 0.00 0.00 0.00 4.61
158 159 0.528684 GCTAGACACAGCATCGGGAC 60.529 60.000 0.00 0.00 41.40 4.46
159 160 0.970427 TGCTAGACACAGCATCGGGA 60.970 55.000 0.00 0.00 46.41 5.14
160 161 1.517361 TGCTAGACACAGCATCGGG 59.483 57.895 0.00 0.00 46.41 5.14
166 167 0.249238 CCGAGGATGCTAGACACAGC 60.249 60.000 0.00 0.00 42.15 4.40
167 168 1.336440 CTCCGAGGATGCTAGACACAG 59.664 57.143 0.00 0.00 0.00 3.66
168 169 1.393603 CTCCGAGGATGCTAGACACA 58.606 55.000 0.00 0.00 0.00 3.72
169 170 0.671251 CCTCCGAGGATGCTAGACAC 59.329 60.000 9.01 0.00 37.67 3.67
170 171 0.468214 CCCTCCGAGGATGCTAGACA 60.468 60.000 16.69 0.00 37.67 3.41
171 172 1.811645 GCCCTCCGAGGATGCTAGAC 61.812 65.000 16.69 0.00 37.67 2.59
172 173 1.531840 GCCCTCCGAGGATGCTAGA 60.532 63.158 16.69 0.00 37.67 2.43
173 174 2.925262 CGCCCTCCGAGGATGCTAG 61.925 68.421 16.69 0.00 37.67 3.42
174 175 2.912542 CGCCCTCCGAGGATGCTA 60.913 66.667 16.69 0.00 37.67 3.49
176 177 4.899239 CACGCCCTCCGAGGATGC 62.899 72.222 16.69 10.57 37.67 3.91
177 178 3.461773 ACACGCCCTCCGAGGATG 61.462 66.667 16.69 12.84 37.67 3.51
178 179 3.461773 CACACGCCCTCCGAGGAT 61.462 66.667 16.69 0.00 37.67 3.24
181 182 4.135153 CTCCACACGCCCTCCGAG 62.135 72.222 0.00 0.00 41.02 4.63
184 185 4.394712 CACCTCCACACGCCCTCC 62.395 72.222 0.00 0.00 0.00 4.30
185 186 3.626924 ACACCTCCACACGCCCTC 61.627 66.667 0.00 0.00 0.00 4.30
186 187 3.941188 CACACCTCCACACGCCCT 61.941 66.667 0.00 0.00 0.00 5.19
187 188 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
188 189 2.665185 GACACACCTCCACACGCC 60.665 66.667 0.00 0.00 0.00 5.68
189 190 1.664965 GAGACACACCTCCACACGC 60.665 63.158 0.00 0.00 0.00 5.34
190 191 4.655527 GAGACACACCTCCACACG 57.344 61.111 0.00 0.00 0.00 4.49
196 197 4.436998 CCGCCGGAGACACACCTC 62.437 72.222 5.05 0.00 0.00 3.85
197 198 4.988716 TCCGCCGGAGACACACCT 62.989 66.667 5.05 0.00 0.00 4.00
198 199 3.718210 GATCCGCCGGAGACACACC 62.718 68.421 13.12 0.00 34.05 4.16
199 200 2.202756 GATCCGCCGGAGACACAC 60.203 66.667 13.12 0.00 34.05 3.82
200 201 2.362503 AGATCCGCCGGAGACACA 60.363 61.111 13.12 0.00 34.05 3.72
201 202 2.413765 GAGATCCGCCGGAGACAC 59.586 66.667 13.12 3.39 34.05 3.67
202 203 3.209812 CGAGATCCGCCGGAGACA 61.210 66.667 13.12 0.00 34.05 3.41
211 212 2.429236 CGAATCCCGCGAGATCCG 60.429 66.667 8.23 0.00 42.21 4.18
212 213 2.049063 CCGAATCCCGCGAGATCC 60.049 66.667 8.23 0.00 36.84 3.36
213 214 1.371881 GACCGAATCCCGCGAGATC 60.372 63.158 8.23 0.00 36.84 2.75
214 215 2.728817 GACCGAATCCCGCGAGAT 59.271 61.111 8.23 0.65 36.84 2.75
215 216 3.884350 CGACCGAATCCCGCGAGA 61.884 66.667 8.23 0.00 36.84 4.04
216 217 4.925576 CCGACCGAATCCCGCGAG 62.926 72.222 8.23 0.00 36.84 5.03
220 221 3.305177 AACCACCGACCGAATCCCG 62.305 63.158 0.00 0.00 38.18 5.14
221 222 1.743995 CAACCACCGACCGAATCCC 60.744 63.158 0.00 0.00 0.00 3.85
222 223 0.604511 AACAACCACCGACCGAATCC 60.605 55.000 0.00 0.00 0.00 3.01
223 224 1.232119 AAACAACCACCGACCGAATC 58.768 50.000 0.00 0.00 0.00 2.52
224 225 1.682740 AAAACAACCACCGACCGAAT 58.317 45.000 0.00 0.00 0.00 3.34
225 226 1.461559 AAAAACAACCACCGACCGAA 58.538 45.000 0.00 0.00 0.00 4.30
226 227 2.211806 CTAAAAACAACCACCGACCGA 58.788 47.619 0.00 0.00 0.00 4.69
227 228 1.941975 ACTAAAAACAACCACCGACCG 59.058 47.619 0.00 0.00 0.00 4.79
228 229 2.033675 CCACTAAAAACAACCACCGACC 59.966 50.000 0.00 0.00 0.00 4.79
229 230 2.944349 TCCACTAAAAACAACCACCGAC 59.056 45.455 0.00 0.00 0.00 4.79
230 231 3.278668 TCCACTAAAAACAACCACCGA 57.721 42.857 0.00 0.00 0.00 4.69
231 232 3.057806 GGATCCACTAAAAACAACCACCG 60.058 47.826 6.95 0.00 0.00 4.94
232 233 3.057806 CGGATCCACTAAAAACAACCACC 60.058 47.826 13.41 0.00 0.00 4.61
233 234 3.610821 GCGGATCCACTAAAAACAACCAC 60.611 47.826 13.41 0.00 0.00 4.16
234 235 2.554893 GCGGATCCACTAAAAACAACCA 59.445 45.455 13.41 0.00 0.00 3.67
235 236 2.817844 AGCGGATCCACTAAAAACAACC 59.182 45.455 13.41 0.00 0.00 3.77
236 237 3.424433 CGAGCGGATCCACTAAAAACAAC 60.424 47.826 13.41 0.00 0.00 3.32
237 238 2.739913 CGAGCGGATCCACTAAAAACAA 59.260 45.455 13.41 0.00 0.00 2.83
238 239 2.343101 CGAGCGGATCCACTAAAAACA 58.657 47.619 13.41 0.00 0.00 2.83
239 240 1.664151 CCGAGCGGATCCACTAAAAAC 59.336 52.381 13.41 0.00 37.50 2.43
240 241 1.551430 TCCGAGCGGATCCACTAAAAA 59.449 47.619 13.41 0.00 39.76 1.94
241 242 1.187974 TCCGAGCGGATCCACTAAAA 58.812 50.000 13.41 0.00 39.76 1.52
242 243 2.890612 TCCGAGCGGATCCACTAAA 58.109 52.632 13.41 0.00 39.76 1.85
243 244 4.670199 TCCGAGCGGATCCACTAA 57.330 55.556 13.41 0.00 39.76 2.24
252 253 3.077519 AAAGACCGGATCCGAGCGG 62.078 63.158 35.42 20.34 42.83 5.52
253 254 1.878522 CAAAGACCGGATCCGAGCG 60.879 63.158 35.42 20.71 42.83 5.03
254 255 0.391263 AACAAAGACCGGATCCGAGC 60.391 55.000 35.42 24.41 42.83 5.03
255 256 1.732259 CAAACAAAGACCGGATCCGAG 59.268 52.381 35.42 25.48 42.83 4.63
256 257 1.071071 ACAAACAAAGACCGGATCCGA 59.929 47.619 35.42 0.00 42.83 4.55
257 258 1.463444 GACAAACAAAGACCGGATCCG 59.537 52.381 27.65 27.65 39.44 4.18
258 259 2.779506 AGACAAACAAAGACCGGATCC 58.220 47.619 9.46 0.00 0.00 3.36
259 260 4.036380 ACAAAGACAAACAAAGACCGGATC 59.964 41.667 9.46 1.42 0.00 3.36
260 261 3.951680 ACAAAGACAAACAAAGACCGGAT 59.048 39.130 9.46 0.00 0.00 4.18
261 262 3.349022 ACAAAGACAAACAAAGACCGGA 58.651 40.909 9.46 0.00 0.00 5.14
262 263 3.775661 ACAAAGACAAACAAAGACCGG 57.224 42.857 0.00 0.00 0.00 5.28
263 264 4.728534 TGAACAAAGACAAACAAAGACCG 58.271 39.130 0.00 0.00 0.00 4.79
264 265 5.005682 GCATGAACAAAGACAAACAAAGACC 59.994 40.000 0.00 0.00 0.00 3.85
265 266 5.275881 CGCATGAACAAAGACAAACAAAGAC 60.276 40.000 0.00 0.00 0.00 3.01
266 267 4.797868 CGCATGAACAAAGACAAACAAAGA 59.202 37.500 0.00 0.00 0.00 2.52
267 268 4.562394 ACGCATGAACAAAGACAAACAAAG 59.438 37.500 0.00 0.00 0.00 2.77
268 269 4.489810 ACGCATGAACAAAGACAAACAAA 58.510 34.783 0.00 0.00 0.00 2.83
269 270 4.103365 ACGCATGAACAAAGACAAACAA 57.897 36.364 0.00 0.00 0.00 2.83
270 271 3.773860 ACGCATGAACAAAGACAAACA 57.226 38.095 0.00 0.00 0.00 2.83
271 272 5.912396 TGAATACGCATGAACAAAGACAAAC 59.088 36.000 0.00 0.00 0.00 2.93
272 273 6.017523 TCTGAATACGCATGAACAAAGACAAA 60.018 34.615 0.00 0.00 0.00 2.83
273 274 5.468409 TCTGAATACGCATGAACAAAGACAA 59.532 36.000 0.00 0.00 0.00 3.18
274 275 4.994217 TCTGAATACGCATGAACAAAGACA 59.006 37.500 0.00 0.00 0.00 3.41
275 276 5.530519 TCTGAATACGCATGAACAAAGAC 57.469 39.130 0.00 0.00 0.00 3.01
276 277 6.149308 ACAATCTGAATACGCATGAACAAAGA 59.851 34.615 0.00 0.00 0.00 2.52
277 278 6.317088 ACAATCTGAATACGCATGAACAAAG 58.683 36.000 0.00 0.00 0.00 2.77
278 279 6.252967 ACAATCTGAATACGCATGAACAAA 57.747 33.333 0.00 0.00 0.00 2.83
279 280 5.878332 ACAATCTGAATACGCATGAACAA 57.122 34.783 0.00 0.00 0.00 2.83
280 281 7.552458 AATACAATCTGAATACGCATGAACA 57.448 32.000 0.00 0.00 0.00 3.18
283 284 8.935844 GGAATAATACAATCTGAATACGCATGA 58.064 33.333 0.00 0.00 0.00 3.07
284 285 8.720562 TGGAATAATACAATCTGAATACGCATG 58.279 33.333 0.00 0.00 0.00 4.06
285 286 8.846943 TGGAATAATACAATCTGAATACGCAT 57.153 30.769 0.00 0.00 0.00 4.73
286 287 8.669946 TTGGAATAATACAATCTGAATACGCA 57.330 30.769 0.00 0.00 0.00 5.24
305 306 9.277783 CCGATGAAGAGAAGTTTATATTGGAAT 57.722 33.333 0.00 0.00 0.00 3.01
306 307 7.715249 CCCGATGAAGAGAAGTTTATATTGGAA 59.285 37.037 0.00 0.00 0.00 3.53
307 308 7.070696 TCCCGATGAAGAGAAGTTTATATTGGA 59.929 37.037 0.00 0.00 0.00 3.53
308 309 7.171678 GTCCCGATGAAGAGAAGTTTATATTGG 59.828 40.741 0.00 0.00 0.00 3.16
309 310 7.096023 CGTCCCGATGAAGAGAAGTTTATATTG 60.096 40.741 0.00 0.00 0.00 1.90
310 311 6.924060 CGTCCCGATGAAGAGAAGTTTATATT 59.076 38.462 0.00 0.00 0.00 1.28
311 312 6.448006 CGTCCCGATGAAGAGAAGTTTATAT 58.552 40.000 0.00 0.00 0.00 0.86
312 313 5.221185 CCGTCCCGATGAAGAGAAGTTTATA 60.221 44.000 0.00 0.00 0.00 0.98
313 314 4.441634 CCGTCCCGATGAAGAGAAGTTTAT 60.442 45.833 0.00 0.00 0.00 1.40
314 315 3.119245 CCGTCCCGATGAAGAGAAGTTTA 60.119 47.826 0.00 0.00 0.00 2.01
315 316 2.353803 CCGTCCCGATGAAGAGAAGTTT 60.354 50.000 0.00 0.00 0.00 2.66
316 317 1.204941 CCGTCCCGATGAAGAGAAGTT 59.795 52.381 0.00 0.00 0.00 2.66
317 318 0.818296 CCGTCCCGATGAAGAGAAGT 59.182 55.000 0.00 0.00 0.00 3.01
318 319 0.818296 ACCGTCCCGATGAAGAGAAG 59.182 55.000 0.00 0.00 0.00 2.85
319 320 1.263356 AACCGTCCCGATGAAGAGAA 58.737 50.000 0.00 0.00 0.00 2.87
320 321 2.133281 TAACCGTCCCGATGAAGAGA 57.867 50.000 0.00 0.00 0.00 3.10
321 322 3.123804 CAATAACCGTCCCGATGAAGAG 58.876 50.000 0.00 0.00 0.00 2.85
322 323 2.498481 ACAATAACCGTCCCGATGAAGA 59.502 45.455 0.00 0.00 0.00 2.87
323 324 2.901249 ACAATAACCGTCCCGATGAAG 58.099 47.619 0.00 0.00 0.00 3.02
324 325 3.055675 AGAACAATAACCGTCCCGATGAA 60.056 43.478 0.00 0.00 0.00 2.57
325 326 2.498481 AGAACAATAACCGTCCCGATGA 59.502 45.455 0.00 0.00 0.00 2.92
326 327 2.607635 CAGAACAATAACCGTCCCGATG 59.392 50.000 0.00 0.00 0.00 3.84
327 328 2.419574 CCAGAACAATAACCGTCCCGAT 60.420 50.000 0.00 0.00 0.00 4.18
328 329 1.066716 CCAGAACAATAACCGTCCCGA 60.067 52.381 0.00 0.00 0.00 5.14
329 330 1.338389 ACCAGAACAATAACCGTCCCG 60.338 52.381 0.00 0.00 0.00 5.14
330 331 2.081462 CACCAGAACAATAACCGTCCC 58.919 52.381 0.00 0.00 0.00 4.46
331 332 1.467342 GCACCAGAACAATAACCGTCC 59.533 52.381 0.00 0.00 0.00 4.79
332 333 1.127951 CGCACCAGAACAATAACCGTC 59.872 52.381 0.00 0.00 0.00 4.79
333 334 1.153353 CGCACCAGAACAATAACCGT 58.847 50.000 0.00 0.00 0.00 4.83
334 335 1.153353 ACGCACCAGAACAATAACCG 58.847 50.000 0.00 0.00 0.00 4.44
335 336 2.351350 CCAACGCACCAGAACAATAACC 60.351 50.000 0.00 0.00 0.00 2.85
336 337 2.292292 ACCAACGCACCAGAACAATAAC 59.708 45.455 0.00 0.00 0.00 1.89
337 338 2.550606 GACCAACGCACCAGAACAATAA 59.449 45.455 0.00 0.00 0.00 1.40
338 339 2.147958 GACCAACGCACCAGAACAATA 58.852 47.619 0.00 0.00 0.00 1.90
339 340 0.951558 GACCAACGCACCAGAACAAT 59.048 50.000 0.00 0.00 0.00 2.71
340 341 1.098712 GGACCAACGCACCAGAACAA 61.099 55.000 0.00 0.00 0.00 2.83
341 342 1.525077 GGACCAACGCACCAGAACA 60.525 57.895 0.00 0.00 0.00 3.18
342 343 0.034337 TAGGACCAACGCACCAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
343 344 0.981183 ATAGGACCAACGCACCAGAA 59.019 50.000 0.00 0.00 0.00 3.02
344 345 0.249120 CATAGGACCAACGCACCAGA 59.751 55.000 0.00 0.00 0.00 3.86
345 346 0.744414 CCATAGGACCAACGCACCAG 60.744 60.000 0.00 0.00 0.00 4.00
346 347 1.298340 CCATAGGACCAACGCACCA 59.702 57.895 0.00 0.00 0.00 4.17
347 348 1.451387 CCCATAGGACCAACGCACC 60.451 63.158 0.00 0.00 33.47 5.01
348 349 1.451387 CCCCATAGGACCAACGCAC 60.451 63.158 0.00 0.00 38.24 5.34
349 350 2.994699 CCCCATAGGACCAACGCA 59.005 61.111 0.00 0.00 38.24 5.24
350 351 2.516225 GCCCCATAGGACCAACGC 60.516 66.667 0.00 0.00 38.24 4.84
351 352 2.192175 GGCCCCATAGGACCAACG 59.808 66.667 0.00 0.00 37.96 4.10
357 358 1.407656 CGTGCTAAGGCCCCATAGGA 61.408 60.000 0.00 0.00 38.24 2.94
358 359 1.071471 CGTGCTAAGGCCCCATAGG 59.929 63.158 0.00 0.00 37.74 2.57
359 360 0.249911 GTCGTGCTAAGGCCCCATAG 60.250 60.000 0.00 0.67 37.74 2.23
360 361 1.827394 GTCGTGCTAAGGCCCCATA 59.173 57.895 0.00 0.00 37.74 2.74
361 362 2.590092 GTCGTGCTAAGGCCCCAT 59.410 61.111 0.00 0.00 37.74 4.00
362 363 4.077184 CGTCGTGCTAAGGCCCCA 62.077 66.667 0.00 0.00 37.74 4.96
363 364 3.766691 TCGTCGTGCTAAGGCCCC 61.767 66.667 0.00 0.00 37.74 5.80
364 365 2.502692 AAGTCGTCGTGCTAAGGCCC 62.503 60.000 0.00 0.00 37.74 5.80
365 366 1.077089 GAAGTCGTCGTGCTAAGGCC 61.077 60.000 0.00 0.00 37.74 5.19
366 367 1.077089 GGAAGTCGTCGTGCTAAGGC 61.077 60.000 0.00 0.00 39.26 4.35
367 368 0.526662 AGGAAGTCGTCGTGCTAAGG 59.473 55.000 0.00 0.00 0.00 2.69
368 369 1.199327 TCAGGAAGTCGTCGTGCTAAG 59.801 52.381 3.89 0.00 41.11 2.18
369 370 1.068748 GTCAGGAAGTCGTCGTGCTAA 60.069 52.381 3.89 0.00 41.11 3.09
370 371 0.520404 GTCAGGAAGTCGTCGTGCTA 59.480 55.000 3.89 0.00 41.11 3.49
371 372 1.173444 AGTCAGGAAGTCGTCGTGCT 61.173 55.000 3.89 2.68 41.11 4.40
372 373 1.004277 CAGTCAGGAAGTCGTCGTGC 61.004 60.000 3.89 0.70 41.11 5.34
373 374 0.311165 ACAGTCAGGAAGTCGTCGTG 59.689 55.000 2.49 2.49 42.41 4.35
374 375 1.030457 AACAGTCAGGAAGTCGTCGT 58.970 50.000 0.00 0.00 0.00 4.34
375 376 2.135664 AAACAGTCAGGAAGTCGTCG 57.864 50.000 0.00 0.00 0.00 5.12
376 377 4.240175 AGTAAACAGTCAGGAAGTCGTC 57.760 45.455 0.00 0.00 0.00 4.20
377 378 4.581824 TGTAGTAAACAGTCAGGAAGTCGT 59.418 41.667 0.00 0.00 33.01 4.34
378 379 5.117355 TGTAGTAAACAGTCAGGAAGTCG 57.883 43.478 0.00 0.00 33.01 4.18
379 380 6.278363 TGTTGTAGTAAACAGTCAGGAAGTC 58.722 40.000 0.00 0.00 39.87 3.01
380 381 6.229936 TGTTGTAGTAAACAGTCAGGAAGT 57.770 37.500 0.00 0.00 39.87 3.01
381 382 7.730364 ATTGTTGTAGTAAACAGTCAGGAAG 57.270 36.000 0.00 0.00 40.93 3.46
382 383 8.402472 CAAATTGTTGTAGTAAACAGTCAGGAA 58.598 33.333 0.00 0.00 40.93 3.36
383 384 7.554835 ACAAATTGTTGTAGTAAACAGTCAGGA 59.445 33.333 0.00 0.00 46.33 3.86
384 385 7.643764 CACAAATTGTTGTAGTAAACAGTCAGG 59.356 37.037 0.00 0.00 46.47 3.86
385 386 7.165812 GCACAAATTGTTGTAGTAAACAGTCAG 59.834 37.037 0.00 0.00 46.47 3.51
386 387 6.970043 GCACAAATTGTTGTAGTAAACAGTCA 59.030 34.615 0.00 0.00 46.47 3.41
387 388 6.416750 GGCACAAATTGTTGTAGTAAACAGTC 59.583 38.462 0.00 0.00 46.47 3.51
388 389 6.127591 TGGCACAAATTGTTGTAGTAAACAGT 60.128 34.615 0.00 0.00 46.47 3.55
389 390 6.269315 TGGCACAAATTGTTGTAGTAAACAG 58.731 36.000 0.00 0.00 46.47 3.16
390 391 6.208988 TGGCACAAATTGTTGTAGTAAACA 57.791 33.333 0.00 0.00 46.47 2.83
391 392 5.174943 GCTGGCACAAATTGTTGTAGTAAAC 59.825 40.000 0.00 0.00 46.47 2.01
392 393 5.068460 AGCTGGCACAAATTGTTGTAGTAAA 59.932 36.000 0.00 0.00 46.47 2.01
393 394 4.582656 AGCTGGCACAAATTGTTGTAGTAA 59.417 37.500 0.00 0.00 46.47 2.24
394 395 4.141287 AGCTGGCACAAATTGTTGTAGTA 58.859 39.130 0.00 0.00 46.47 1.82
395 396 2.958355 AGCTGGCACAAATTGTTGTAGT 59.042 40.909 0.00 0.00 46.47 2.73
396 397 3.568538 GAGCTGGCACAAATTGTTGTAG 58.431 45.455 0.00 0.00 46.47 2.74
397 398 2.295909 GGAGCTGGCACAAATTGTTGTA 59.704 45.455 0.00 0.00 46.47 2.41
399 400 1.787012 GGAGCTGGCACAAATTGTTG 58.213 50.000 0.00 0.00 38.70 3.33
400 401 0.314935 CGGAGCTGGCACAAATTGTT 59.685 50.000 0.00 0.00 38.70 2.83
401 402 1.526575 CCGGAGCTGGCACAAATTGT 61.527 55.000 0.00 0.00 38.70 2.71
402 403 1.213537 CCGGAGCTGGCACAAATTG 59.786 57.895 0.00 0.00 38.70 2.32
403 404 3.685435 CCGGAGCTGGCACAAATT 58.315 55.556 0.00 0.00 38.70 1.82
411 412 4.479993 CTCCCTTGCCGGAGCTGG 62.480 72.222 5.05 0.00 43.01 4.85
418 419 4.473520 ATCGCCACTCCCTTGCCG 62.474 66.667 0.00 0.00 0.00 5.69
419 420 2.825836 CATCGCCACTCCCTTGCC 60.826 66.667 0.00 0.00 0.00 4.52
420 421 2.109126 GTCATCGCCACTCCCTTGC 61.109 63.158 0.00 0.00 0.00 4.01
421 422 1.811266 CGTCATCGCCACTCCCTTG 60.811 63.158 0.00 0.00 0.00 3.61
422 423 2.579201 CGTCATCGCCACTCCCTT 59.421 61.111 0.00 0.00 0.00 3.95
423 424 3.461773 CCGTCATCGCCACTCCCT 61.462 66.667 0.00 0.00 35.54 4.20
432 433 1.282248 ATTAATCGCCGCCGTCATCG 61.282 55.000 0.00 0.00 35.54 3.84
433 434 1.705256 TATTAATCGCCGCCGTCATC 58.295 50.000 0.00 0.00 35.54 2.92
434 435 2.380084 ATATTAATCGCCGCCGTCAT 57.620 45.000 0.00 0.00 35.54 3.06
435 436 2.157834 AATATTAATCGCCGCCGTCA 57.842 45.000 0.00 0.00 35.54 4.35
436 437 3.060363 CACTAATATTAATCGCCGCCGTC 59.940 47.826 0.00 0.00 35.54 4.79
437 438 2.991190 CACTAATATTAATCGCCGCCGT 59.009 45.455 0.00 0.00 35.54 5.68
438 439 2.222729 GCACTAATATTAATCGCCGCCG 60.223 50.000 0.00 0.00 0.00 6.46
439 440 2.095372 GGCACTAATATTAATCGCCGCC 59.905 50.000 11.60 7.03 0.00 6.13
440 441 2.739913 TGGCACTAATATTAATCGCCGC 59.260 45.455 17.90 6.82 41.01 6.53
441 442 5.545658 AATGGCACTAATATTAATCGCCG 57.454 39.130 17.90 1.83 41.01 6.46
442 443 6.908825 TCAAATGGCACTAATATTAATCGCC 58.091 36.000 16.94 16.94 38.56 5.54
443 444 8.690840 GTTTCAAATGGCACTAATATTAATCGC 58.309 33.333 0.00 0.02 0.00 4.58
444 445 9.729023 TGTTTCAAATGGCACTAATATTAATCG 57.271 29.630 0.00 0.00 0.00 3.34
449 450 9.995003 TCTTTTGTTTCAAATGGCACTAATATT 57.005 25.926 0.00 0.00 0.00 1.28
450 451 9.995003 TTCTTTTGTTTCAAATGGCACTAATAT 57.005 25.926 0.00 0.00 0.00 1.28
451 452 9.823647 TTTCTTTTGTTTCAAATGGCACTAATA 57.176 25.926 0.00 0.00 0.00 0.98
452 453 8.611757 GTTTCTTTTGTTTCAAATGGCACTAAT 58.388 29.630 0.00 0.00 0.00 1.73
453 454 7.201478 CGTTTCTTTTGTTTCAAATGGCACTAA 60.201 33.333 0.00 0.00 0.00 2.24
454 455 6.254589 CGTTTCTTTTGTTTCAAATGGCACTA 59.745 34.615 0.00 0.00 0.00 2.74
455 456 5.063312 CGTTTCTTTTGTTTCAAATGGCACT 59.937 36.000 0.00 0.00 0.00 4.40
456 457 5.062809 TCGTTTCTTTTGTTTCAAATGGCAC 59.937 36.000 0.00 5.23 0.00 5.01
457 458 5.171476 TCGTTTCTTTTGTTTCAAATGGCA 58.829 33.333 0.00 0.00 0.00 4.92
458 459 5.290885 ACTCGTTTCTTTTGTTTCAAATGGC 59.709 36.000 7.77 0.00 0.00 4.40
459 460 6.237808 CCACTCGTTTCTTTTGTTTCAAATGG 60.238 38.462 7.77 0.00 0.00 3.16
460 461 6.310224 ACCACTCGTTTCTTTTGTTTCAAATG 59.690 34.615 0.00 0.00 0.00 2.32
461 462 6.394809 ACCACTCGTTTCTTTTGTTTCAAAT 58.605 32.000 0.00 0.00 0.00 2.32
462 463 5.774630 ACCACTCGTTTCTTTTGTTTCAAA 58.225 33.333 0.00 0.00 0.00 2.69
463 464 5.379732 ACCACTCGTTTCTTTTGTTTCAA 57.620 34.783 0.00 0.00 0.00 2.69
464 465 5.644636 ACTACCACTCGTTTCTTTTGTTTCA 59.355 36.000 0.00 0.00 0.00 2.69
465 466 6.115450 ACTACCACTCGTTTCTTTTGTTTC 57.885 37.500 0.00 0.00 0.00 2.78
466 467 6.820152 AGTACTACCACTCGTTTCTTTTGTTT 59.180 34.615 0.00 0.00 0.00 2.83
467 468 6.343703 AGTACTACCACTCGTTTCTTTTGTT 58.656 36.000 0.00 0.00 0.00 2.83
468 469 5.910614 AGTACTACCACTCGTTTCTTTTGT 58.089 37.500 0.00 0.00 0.00 2.83
469 470 9.070149 GTATAGTACTACCACTCGTTTCTTTTG 57.930 37.037 4.31 0.00 0.00 2.44
470 471 8.246871 GGTATAGTACTACCACTCGTTTCTTTT 58.753 37.037 4.31 0.00 40.81 2.27
471 472 7.394359 TGGTATAGTACTACCACTCGTTTCTTT 59.606 37.037 12.65 0.00 44.87 2.52
472 473 6.886459 TGGTATAGTACTACCACTCGTTTCTT 59.114 38.462 12.65 0.00 44.87 2.52
473 474 6.418101 TGGTATAGTACTACCACTCGTTTCT 58.582 40.000 12.65 0.00 44.87 2.52
474 475 6.683974 TGGTATAGTACTACCACTCGTTTC 57.316 41.667 12.65 0.00 44.87 2.78
519 520 3.262420 CCTAGCAACGACTACAAGCATT 58.738 45.455 0.00 0.00 0.00 3.56
520 521 2.233922 ACCTAGCAACGACTACAAGCAT 59.766 45.455 0.00 0.00 0.00 3.79
529 530 3.521947 AATAGACCACCTAGCAACGAC 57.478 47.619 0.00 0.00 0.00 4.34
531 532 6.590292 CCATATTAATAGACCACCTAGCAACG 59.410 42.308 1.02 0.00 0.00 4.10
532 533 7.676947 TCCATATTAATAGACCACCTAGCAAC 58.323 38.462 1.02 0.00 0.00 4.17
575 576 2.447443 TGGCAGTACAACAAACACCAA 58.553 42.857 0.00 0.00 0.00 3.67
594 595 7.095270 TGTCGATCTATTCATCTCCAATCATG 58.905 38.462 0.00 0.00 0.00 3.07
602 603 5.627367 CGGAAACTGTCGATCTATTCATCTC 59.373 44.000 0.00 0.00 0.00 2.75
604 605 4.681942 CCGGAAACTGTCGATCTATTCATC 59.318 45.833 0.00 0.00 0.00 2.92
618 619 6.280643 AGGAATTTTCTTTTTCCGGAAACTG 58.719 36.000 28.97 22.33 44.99 3.16
626 627 5.105877 CGGGGACTAGGAATTTTCTTTTTCC 60.106 44.000 0.00 0.00 41.46 3.13
633 634 2.413310 TGCGGGGACTAGGAATTTTC 57.587 50.000 0.00 0.00 0.00 2.29
638 639 1.354101 TTCTTTGCGGGGACTAGGAA 58.646 50.000 0.00 0.00 0.00 3.36
639 640 1.354101 TTTCTTTGCGGGGACTAGGA 58.646 50.000 0.00 0.00 0.00 2.94
695 698 4.334481 TGTTTTCGAACCTCTGTCCTTTTC 59.666 41.667 0.00 0.00 0.00 2.29
699 702 3.553828 TTGTTTTCGAACCTCTGTCCT 57.446 42.857 0.00 0.00 0.00 3.85
727 730 5.265989 ACCCCAACTTCACACTTTAAAAGA 58.734 37.500 0.00 0.00 0.00 2.52
728 731 5.592104 ACCCCAACTTCACACTTTAAAAG 57.408 39.130 0.00 0.00 0.00 2.27
798 801 1.660167 GGGCCTACACGGTTGTAATC 58.340 55.000 0.84 0.00 37.77 1.75
799 802 0.253894 GGGGCCTACACGGTTGTAAT 59.746 55.000 0.84 0.00 37.77 1.89
800 803 0.837260 AGGGGCCTACACGGTTGTAA 60.837 55.000 0.84 0.00 37.77 2.41
801 804 0.837260 AAGGGGCCTACACGGTTGTA 60.837 55.000 0.84 0.00 37.15 2.41
802 805 2.120737 GAAGGGGCCTACACGGTTGT 62.121 60.000 0.84 0.00 40.02 3.32
803 806 1.376812 GAAGGGGCCTACACGGTTG 60.377 63.158 0.84 0.00 34.25 3.77
804 807 1.838073 CTGAAGGGGCCTACACGGTT 61.838 60.000 0.84 0.00 34.25 4.44
805 808 2.203877 TGAAGGGGCCTACACGGT 60.204 61.111 0.84 0.00 34.25 4.83
806 809 1.838073 AACTGAAGGGGCCTACACGG 61.838 60.000 0.84 0.06 0.00 4.94
807 810 0.036306 AAACTGAAGGGGCCTACACG 59.964 55.000 0.84 0.00 0.00 4.49
808 811 2.940083 GCTAAACTGAAGGGGCCTACAC 60.940 54.545 0.84 0.00 0.00 2.90
809 812 1.280998 GCTAAACTGAAGGGGCCTACA 59.719 52.381 0.84 0.32 0.00 2.74
810 813 1.408405 GGCTAAACTGAAGGGGCCTAC 60.408 57.143 0.84 0.00 36.96 3.18
816 819 0.681243 GGCTGGGCTAAACTGAAGGG 60.681 60.000 0.00 0.00 0.00 3.95
843 846 0.035739 GTTGGGCCTACTCGTGGAAA 59.964 55.000 11.03 0.00 0.00 3.13
879 882 2.184579 GAGTGAGGTAGCACCGGC 59.815 66.667 0.00 0.00 44.90 6.13
1156 1163 2.740826 GCAGCGCGTGGAAGGTTA 60.741 61.111 8.43 0.00 0.00 2.85
1262 1270 1.379843 GCCCCGTTTCATCACCCAT 60.380 57.895 0.00 0.00 0.00 4.00
1305 1317 2.606272 GGTTACAACTACATACGGCAGC 59.394 50.000 0.00 0.00 0.00 5.25
1313 1325 2.063266 CGTGCACGGTTACAACTACAT 58.937 47.619 31.15 0.00 35.37 2.29
1331 1343 7.642586 GCCTTAATCGCTTTAAAATACAATCGT 59.357 33.333 0.00 0.00 29.52 3.73
1332 1344 7.642194 TGCCTTAATCGCTTTAAAATACAATCG 59.358 33.333 0.00 0.00 29.52 3.34
1361 1373 9.724839 GTGTGCCTTAATCGCTTTATTAAATTA 57.275 29.630 0.00 0.00 32.41 1.40
1362 1374 8.247562 TGTGTGCCTTAATCGCTTTATTAAATT 58.752 29.630 0.00 0.00 32.41 1.82
1363 1375 7.700656 GTGTGTGCCTTAATCGCTTTATTAAAT 59.299 33.333 0.00 0.00 32.41 1.40
1364 1376 7.024768 GTGTGTGCCTTAATCGCTTTATTAAA 58.975 34.615 0.00 0.00 32.41 1.52
1365 1377 6.403855 GGTGTGTGCCTTAATCGCTTTATTAA 60.404 38.462 0.00 0.00 32.00 1.40
1366 1378 5.065474 GGTGTGTGCCTTAATCGCTTTATTA 59.935 40.000 0.00 0.00 0.00 0.98
1367 1379 4.142469 GGTGTGTGCCTTAATCGCTTTATT 60.142 41.667 0.00 0.00 0.00 1.40
1368 1380 3.377172 GGTGTGTGCCTTAATCGCTTTAT 59.623 43.478 0.00 0.00 0.00 1.40
1369 1381 2.745281 GGTGTGTGCCTTAATCGCTTTA 59.255 45.455 0.00 0.00 0.00 1.85
1370 1382 1.539827 GGTGTGTGCCTTAATCGCTTT 59.460 47.619 0.00 0.00 0.00 3.51
1371 1383 1.165270 GGTGTGTGCCTTAATCGCTT 58.835 50.000 0.00 0.00 0.00 4.68
1372 1384 0.036164 TGGTGTGTGCCTTAATCGCT 59.964 50.000 0.00 0.00 0.00 4.93
1373 1385 0.447801 CTGGTGTGTGCCTTAATCGC 59.552 55.000 0.00 0.00 0.00 4.58
1374 1386 1.732259 GTCTGGTGTGTGCCTTAATCG 59.268 52.381 0.00 0.00 0.00 3.34
1375 1387 2.084546 GGTCTGGTGTGTGCCTTAATC 58.915 52.381 0.00 0.00 0.00 1.75
1376 1388 1.423541 TGGTCTGGTGTGTGCCTTAAT 59.576 47.619 0.00 0.00 0.00 1.40
1377 1389 0.840617 TGGTCTGGTGTGTGCCTTAA 59.159 50.000 0.00 0.00 0.00 1.85
1378 1390 0.840617 TTGGTCTGGTGTGTGCCTTA 59.159 50.000 0.00 0.00 0.00 2.69
1385 1397 5.458041 AATTTTGATCTTGGTCTGGTGTG 57.542 39.130 0.00 0.00 0.00 3.82
1508 1520 9.322776 CACTGAAATTTAGTCGATTTCTTCTTG 57.677 33.333 9.23 0.11 41.70 3.02
1510 1522 8.833231 TCACTGAAATTTAGTCGATTTCTTCT 57.167 30.769 9.23 0.00 41.70 2.85
1561 1573 2.922740 TACCTGACCACCAGAACAAC 57.077 50.000 0.00 0.00 45.78 3.32
1854 1866 9.071276 AGTTTACATGGCTAAATAGATGGAATG 57.929 33.333 0.00 0.00 0.00 2.67
1895 1907 8.889717 CACTATAATTGAAAATAACCACGACCT 58.110 33.333 0.00 0.00 0.00 3.85
2035 2059 8.200120 GCAGGAATTTAAGAAATTGCCTAATCT 58.800 33.333 11.20 0.00 46.51 2.40
2039 2063 6.437162 ACTGCAGGAATTTAAGAAATTGCCTA 59.563 34.615 19.93 0.73 46.51 3.93
2133 2616 2.750712 TCTAAACTAATTTGCGGGGCAC 59.249 45.455 0.00 0.00 38.71 5.01
2137 2620 5.576447 ATGGTTCTAAACTAATTTGCGGG 57.424 39.130 0.00 0.00 0.00 6.13
2248 2732 5.163216 TGGTTTCAAGGCAATTCCTGAAAAT 60.163 36.000 14.92 0.00 46.94 1.82
2252 2736 2.627699 GTGGTTTCAAGGCAATTCCTGA 59.372 45.455 0.00 0.00 46.94 3.86
2582 3066 0.527113 CTGGCCACGCAATTCATGAA 59.473 50.000 11.26 11.26 0.00 2.57
3073 3671 0.315886 TCAGTTGAGCCGCGAGTAAA 59.684 50.000 8.23 0.00 0.00 2.01
3083 3681 2.426522 TGGCAATACTGTCAGTTGAGC 58.573 47.619 11.54 12.00 30.26 4.26
3125 3729 7.229907 ACTGTAAACCATTCCGTACAAGAAAAT 59.770 33.333 0.00 0.00 0.00 1.82
3150 3758 6.128282 TGAGCTATGAAATGAAAGACGGAAAC 60.128 38.462 0.00 0.00 0.00 2.78
3455 4063 6.975197 TGACTATTGCTCTAGTGAAAGATTCG 59.025 38.462 3.87 0.00 32.11 3.34
3604 4214 2.223144 CCACACATCACTTGTTGTACCG 59.777 50.000 0.00 0.00 36.00 4.02
3613 4223 3.441572 GCAAGATAAGCCACACATCACTT 59.558 43.478 0.00 0.00 0.00 3.16
3683 4295 6.969993 AAAATGGTTTTAGCTCCTACAACA 57.030 33.333 0.00 0.00 30.82 3.33
3699 4312 7.067494 GGAGATGCTCTAACATGTAAAAATGGT 59.933 37.037 0.00 0.00 31.46 3.55
3919 4533 7.016153 AGAGAGAGAGAAAAGAGACTGACTA 57.984 40.000 0.00 0.00 0.00 2.59
3930 4544 6.139679 AGAAGGAGAGAGAGAGAGAGAAAA 57.860 41.667 0.00 0.00 0.00 2.29
3931 4545 5.779241 AGAAGGAGAGAGAGAGAGAGAAA 57.221 43.478 0.00 0.00 0.00 2.52
4157 4782 4.168291 GAGCGGGGAAGGCAGAGG 62.168 72.222 0.00 0.00 0.00 3.69
4158 4783 4.521062 CGAGCGGGGAAGGCAGAG 62.521 72.222 0.00 0.00 0.00 3.35
4331 4960 0.606604 GGGACAAGACGCTCAAGGTA 59.393 55.000 0.00 0.00 0.00 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.